[petsc-users] PETSc/TAU configuration

[Matthew Hills]

Hi PETSc Team,


I successfully configured PETSc with TAU using:




	
	
	
	



>  ./configure
--with-mpi=1 --with-cc=tau_cc.sh --with-cxx=mpicxx --with-fc=mpif90
--download-f-blas-lapack=${SESKADIR}/packages/downloads/fblaslapacklinpack-3.1.1.tar.gz

>  make PETSC_DIR=/home/hills/seska/packages/petsc PETSC_ARCH=linux-gnu-cxx-opt all

While building I received this error message:

[100%] Built target petsc

**************************ERROR************************************
  Error during compile, check linux-gnu-cxx-opt/conf/make.log
  Send it and linux-gnu-cxx-opt/conf/configure.log to petsc-maint at mcs.anl.gov
********************************************************************


Because of their large file size, I've attached links to the log files below. Any assistance would be greatly appreciated.

make.log - https://www.dropbox.com/s/n6y8nl8go4s41tq/make.log?dl=0
configure.log - https://www.dropbox.com/s/ipvt4urvgldft8x/configure.log?dl=0


Matthew 


> Date: Mon, 22 Sep 2014 10:24:15 -0500
> From: balay at mcs.anl.gov
> To: hillsmattc at outlook.com
> CC: petsc-users at mcs.anl.gov
> Subject: Re: [petsc-users] PETSc/TAU configuration
> 
> On Mon, 22 Sep 2014, Matthew Hills wrote:
> 
> > Hi PETSc Team,
> > 
> > I'm still experiencing difficulties  with configuring PETSc with TAU. I'm currently:
> > 
> > building OpenMPI
> > 1. ./configure --prefix=${SESKADIR}/packages/openmpi 
> > 2. make all install
> > 
> > set library path
> > 1. export LD_LIBRARY_PATH=${SESKADIR}/lib:${SESKADIR}/packages/openmpi /lib:${SESKADIR}/packages/pdt/x86_64/lib:/${SESKADIR}/packages/tau/x86_64/lib:${SESKADIR}/packages/petsc/${PETSC_ARCH}/lib:$LD_LIBRARY_PATH
> > 2. export PATH=${SESKADIR}/bin:${SESKADIR}/packages/petsc/${PETSC_ARCH}/bin:$PATH
> > 
> > build PDT (pdtoolkit-3.20)
> > 1. ./configure -GNU
> > 2. export PATH=${SESKADIR}/packages/pdt/x86_64/bin:${SESKADIR}/packages/pdt/x86_64//bin:$PATH
> > 5. make
> > 6. make install
> > 
> > build TAU (tau-2.23.1) using OpenMPI
> > 1. ./configure -prefix=`pwd` -cc=mpicc -c++=mpicxx -fortran=mpif90 -pdt=${SESKADIR}/packages/pdt -mpiinc=${SESKADIR}/packages/openmpi/include -mpilib=${SESKADIR}/packages/openmpi/lib -bfd=download
> > 2. export PATH=${SESKADIR}/packages/tau/x86_64/bin:$PATH
> > 3. make install
> > 
> > build fblaslapacklinpack-3.1.1
> > 1. make
> 
> Should have said '--download-fblaslapack' would be fine here [as it
> uses mpif90 - not tau_cc.sh]. Building seperately is also fine.
> 
> > build PETSc using TAU_CC/MPI
> > 1. export TAU_MAKEFILE=${SESKADIR}/packages/tau/x86_64/lib/Makefile.tau-mpi-pdt
> > 2. ./configure --prefix='pwd' --with-mpi=1 --with-cc=tau_cc.sh  --with-cxx=mpicxx --with-fc=mpif90  --with-blas-lapack-dir=${SESKADIR}/packages/fblaslapack
> 
> --prefix='pwd' doesn't make sense. Please remove it.
> 
> > Error: Tried looking for file: /tmp/petsc-U9YCMv/config.setCompilers/conftest
> > Error: Failed to link with TAU options
> > Error: Command(Executable) is -- gcc
> 
> configure.log looks complete [and indicates a successful run]. Did the
> messages above come during configure step on the terminal?
> 
> Can you try the following and see if PETSc builds successfully? [but
> recommend rerunning configure first - without --prefix option]
> 
> make PETSC_DIR=/home/hills/seska/packages/petsc PETSC_ARCH=linux-gnu-cxx-opt all
> 
> Satish
> 
> > 
> > 
> > Attached you'll find my configure log. Any assistance would be greatly appreciated.
> > 
> > Warm regards,
> > Matthew
> > 
> > > Date: Tue, 16 Sep 2014 08:21:41 -0500
> > > From: balay at mcs.anl.gov
> > > To: hillsmattc at outlook.com
> > > CC: petsc-users at mcs.anl.gov
> > > Subject: Re: [petsc-users] PETSc/TAU configuration
> > > 
> > > I haven't tried using TAU in a while - but here are some obvious things to try.
> > > 
> > > 1. --download-mpich [or openmpi] with TAU does not make sense.
> > > 
> > > You would have to build MPICH/OpenMPI first.
> > > 
> > > Then build TAU to use this MPI.
> > > 
> > > And then build PETSc to use this TAU_CC/MPI
> > > 
> > > 2. I would use only tau_cc.sh - and not bother with c++/fortran
> > > 
> > > i.e [with TAU build with a given mpicc] - configure PETSc with:
> > > ./configure --with-cc=tau_cc.sh --with-cxx=mpicxx --with-fc=mpif90
> > > 
> > > 3. Do not use any --download-package when using tau_cc.sh. First check
> > > if you are able to use TAU with PETSc - without externalpackages [you
> > > would need blas,mpi. Use system blas/lapack for blas/lapack - and
> > > build MPI as mentioned above for use with TAU and later PETSc]
> > > 
> > > And if you really need these externalpackage [assuming the above basic
> > > build with TAU works] - I would recommend the following 2 step build process:
> > > 
> > > <build packages without TAU>
> > > 4.1. ./configure --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --download-PACKAGE PETSC_ARCH=arch-packages
> > > 
> > > 4.2. Now strip out the petsc relavent stuff from this location
> > > rm -f arch-packages/include/petsc*.h
> > > 
> > > 4.3. Now build PETSc with TAU - using these prebuilt-packages
> > > 
> > > ./configure --with-cc=tau_cc.sh --with-cxx=mpicxx --with-fc=mpif90 PETSC_ARCH=arch-tau --with-PACKAGE-dir=`pwd`/arch-packages
> > > 
> > > BTW: the current release is petsc-3.5 - we recommend upgrading to
> > > using it [as we usually support the latest release wrt debugging/bug
> > > fixes]
> > > 
> > > Satish
> > > 
> > > 
> > > On Tue, 16 Sep 2014, Matthew Hills wrote:
> > > > 
> > > > Hi PETSc Team,]
> > > > 
> > > > I am experiencing difficulties with configuring PETSc with TAU. I have replaced the standard compilers with the tau_cc.sh, tau_cxx.sh, and tau_f90.sh scripts but this produces multiple errors. I have also attempted to use OpenMPI and MPICH, but both produce their own unique errors.
> > > > 
> > > > After successfully compiling PDT, TAU was compiled with:
> > > > 
> > > > ./configure
> > > > -prefix=`pwd`
> > > > -cc=gcc
> > > > -c++=g++ -fortran=gfortran
> > > > -pdt=${SESKADIR}/packages/pdt
> > > > -mpiinc=${PETSC_DIR}/${PETSC_ARCH}/include
> > > > -mpilib=${PETSC_DIR}/${PETSC_ARCH}/lib -bfd=download
> > > > 
> > > > Attached you'll find the PETSc configuration logs. If any more information is needed please let me know.
> > > > 
> > > > Warm regards,
> > > > 
> > > > Matthew Hills
> > > > University of Cape Town
> > > 
> > 
> >  		 	   		  
> 

 		 	   		  
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