From song.gao2 at mail.mcgill.ca Wed Jan 1 11:09:49 2014 From: song.gao2 at mail.mcgill.ca (Song Gao) Date: Wed, 1 Jan 2014 12:09:49 -0500 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction Message-ID: Dear all, Happy new year! I'm using the matrix-free method to solve NS equations. I call the SNESSetFunction to set the RHS function. I think SNES also uses that RHS function to evaluate the matrix vector product. But I want to set one function to evaluate the residual, and another different function to evaluate the matrix vector product. How can I do that? Does MatMFFDSetFunction do this job? Any suggestion is appreciated. Thank you. Song -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Wed Jan 1 12:16:03 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Wed, 01 Jan 2014 12:16:03 -0600 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: Message-ID: <87mwjfk1p8.fsf@jedbrown.org> Song Gao writes: > Dear all, > > Happy new year! > > I'm using the matrix-free method to solve NS equations. I call > the SNESSetFunction to set the RHS function. I think SNES also uses that > RHS function to evaluate the matrix vector product. > > But I want to set one function to evaluate the residual, and another > different function to evaluate the matrix vector product. How can I do > that? Does MatMFFDSetFunction do this job? Yes, you can look at src/snes/examples/tutorials/ex22.c for an example of similar (replace SNESComputeFunction with your desired function). -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From yaakoub at tacc.utexas.edu Wed Jan 1 13:31:19 2014 From: yaakoub at tacc.utexas.edu (Yaakoub El Khamra) Date: Wed, 1 Jan 2014 13:31:19 -0600 Subject: [petsc-users] Fortran bindings for functions in plex Message-ID: Greetings I realize the fortran bindings are on their way but are there any tricks I can use to generate fortran bindings? Case in point DMLabelCreate in: petsc/src/dm/impls/plex/plexlabel.c . Regards Yaakoub El Khamra -------------- next part -------------- An HTML attachment was scrubbed... URL: From gideon.simpson at gmail.com Wed Jan 1 13:37:05 2014 From: gideon.simpson at gmail.com (Gideon Simpson) Date: Wed, 1 Jan 2014 14:37:05 -0500 Subject: [petsc-users] dmda and vec distribution Message-ID: Suppose I have a 1D dmda structure distributed across N processors, where there are some number of degrees of freedom (dof) associated with each element. Now, suppose I want to have a vec also distributed across the N processors, but distributed "in the same way" as the dmda. That is to say, if I call DMDAGetCorners(da, &idx_lo, NULL, NULL, &idx_width, NULL, NULL); idx_lo to idx_lo+ idx_width are the same indices I'd get if I called VecGetOwnershipRange(vec, &idx_low, &idx_hi); Can I do this? How? The idea here is that I am doing monte carlo where the dmda holds all the random samples. I then want to apply functionals to each of the samples, storing the results of each realization in a vector. Obviously, I can just store this as part of the dmda, but it would be cleaner if I could put it right into a vec. -gideon From jedbrown at mcs.anl.gov Wed Jan 1 13:39:45 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Wed, 01 Jan 2014 13:39:45 -0600 Subject: [petsc-users] Fortran bindings for functions in plex In-Reply-To: References: Message-ID: <87ha9njxtq.fsf@jedbrown.org> Yaakoub El Khamra writes: > Greetings > I realize the fortran bindings are on their way but are there any tricks I > can use to generate fortran bindings? Case in point DMLabelCreate in: > petsc/src/dm/impls/plex/plexlabel.c . Every public function in PETSc is supposed to have a man page. Matt has neglected that rule in a number of places with DMPlex, but hopefully will create the man pages before we release petsc-3.5. Most man pages include the markup to generate Fortran stubs. Functions that pass strings, including DMLabelCreate and all the XXSetType, need custom bindings. You can look at the ftn-custom bindings for XXSetType to see how it's done. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jedbrown at mcs.anl.gov Wed Jan 1 13:41:33 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Wed, 01 Jan 2014 13:41:33 -0600 Subject: [petsc-users] dmda and vec distribution In-Reply-To: References: Message-ID: <87eh4rjxqq.fsf@jedbrown.org> Gideon Simpson writes: > Suppose I have a 1D dmda structure distributed across N processors, > where there are some number of degrees of freedom (dof) associated > with each element. Now, suppose I want to have a vec also distributed > across the N processors, but distributed "in the same way" as the > dmda. That is to say, if I call > > DMDAGetCorners(da, &idx_lo, NULL, NULL, &idx_width, NULL, NULL); > > idx_lo to idx_lo+ idx_width > > are the same indices I'd get if I called > > VecGetOwnershipRange(vec, &idx_low, &idx_hi); > > Can I do this? How? What's wrong with DMCreateGlobalVector()? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From gideon.simpson at gmail.com Wed Jan 1 13:48:12 2014 From: gideon.simpson at gmail.com (Gideon Simpson) Date: Wed, 1 Jan 2014 14:48:12 -0500 Subject: [petsc-users] dmda and vec distribution In-Reply-To: <87eh4rjxqq.fsf@jedbrown.org> References: <87eh4rjxqq.fsf@jedbrown.org> Message-ID: I'll try that, but I'm still a bit confused over the relationship between DMDA and Vec objects. Supposing I called DMDACreate1d with M as my global dimension and dof as the number of degrees of freedom. So this is really managing M * dof scalars. When I call DMCreateGlobalVector, isn't that associated with an M * dof size vector? I really just want to clone a vector of size M, but with the same partitioning. -gideon On Jan 1, 2014, at 2:41 PM, Jed Brown wrote: > Gideon Simpson writes: > >> Suppose I have a 1D dmda structure distributed across N processors, >> where there are some number of degrees of freedom (dof) associated >> with each element. Now, suppose I want to have a vec also distributed >> across the N processors, but distributed "in the same way" as the >> dmda. That is to say, if I call >> >> DMDAGetCorners(da, &idx_lo, NULL, NULL, &idx_width, NULL, NULL); >> >> idx_lo to idx_lo+ idx_width >> >> are the same indices I'd get if I called >> >> VecGetOwnershipRange(vec, &idx_low, &idx_hi); >> >> Can I do this? How? > > What's wrong with DMCreateGlobalVector()? From bsmith at mcs.anl.gov Wed Jan 1 14:01:43 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 1 Jan 2014 14:01:43 -0600 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: Message-ID: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> On Jan 1, 2014, at 11:09 AM, Song Gao wrote: > Dear all, > > Happy new year! > > I'm using the matrix-free method to solve NS equations. I call the SNESSetFunction to set the RHS function. I think SNES also uses that RHS function to evaluate the matrix vector product. Yes, PETSc differences this function to evaluate the matrix vector product. > > But I want to set one function to evaluate the residual, and another different function to evaluate the matrix vector product. Are you providing a function that 1) actually evaluates the matrix vector product or are you 2) providing a function that you want PETSc to difference to evaluate the matrix vector product? > How can I do that? Does MatMFFDSetFunction do this job? For 2) yes, but if the function you provide is different than the function provided with SNESSetFunction then the matrix-vector product obtained from differencing it will not be ?correct? Jacobian for the SNESSetFunction() you are providing so I don?t see why you would do it. For 1) you should use MatCreateShell() and MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to SNESSetJacobian(), then PETSc will use that ?matrix? to do its matrix-vector products. Barry > > Any suggestion is appreciated. Thank you. > > > Song From jedbrown at mcs.anl.gov Wed Jan 1 14:03:13 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Wed, 01 Jan 2014 14:03:13 -0600 Subject: [petsc-users] dmda and vec distribution In-Reply-To: References: <87eh4rjxqq.fsf@jedbrown.org> Message-ID: <87bnzvjwqm.fsf@jedbrown.org> Gideon Simpson writes: > I'll try that, but I'm still a bit confused over the relationship > between DMDA and Vec objects. A DM describes a layout with richer semantic information than a Vec. It's like a "function space". Vec holds an element of that function space. Normal (non-DM) Vec operations (like norms and dot products) interpret the Vec in Euclidean space, while the DM functions can endow more function space structure, provide semantically-meaningful indexing, etc. > Supposing I called DMDACreate1d with M as my global dimension and dof > as the number of degrees of freedom. So this is really managing M * > dof scalars. When I call DMCreateGlobalVector, isn't that associated > with an M * dof size vector? I really just want to clone a vector of > size M, but with the same partitioning. In that case, either create a DMDA with dof=1 or use VecSetSizes to match the local sizes (divided by dof as appropriate) obtained from the DMDA. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Wed Jan 1 14:03:38 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 1 Jan 2014 14:03:38 -0600 Subject: [petsc-users] dmda and vec distribution In-Reply-To: References: <87eh4rjxqq.fsf@jedbrown.org> Message-ID: On Wed, Jan 1, 2014 at 1:48 PM, Gideon Simpson wrote: > I'll try that, but I'm still a bit confused over the relationship between > DMDA and Vec objects. > > Supposing I called DMDACreate1d with M as my global dimension and dof as > the number of degrees of freedom. So this is really managing M * dof > scalars. When I call DMCreateGlobalVector, isn't that associated with an M > * dof size vector? I really just want to clone a vector of size M, but with > the same partitioning. DMDA structures are very lightweight, and the partitioning only depends on M, not dof. Thus just create a separate DMDA for every dof you want. Thanks, Matt > > -gideon > > On Jan 1, 2014, at 2:41 PM, Jed Brown wrote: > > > Gideon Simpson writes: > > > >> Suppose I have a 1D dmda structure distributed across N processors, > >> where there are some number of degrees of freedom (dof) associated > >> with each element. Now, suppose I want to have a vec also distributed > >> across the N processors, but distributed "in the same way" as the > >> dmda. That is to say, if I call > >> > >> DMDAGetCorners(da, &idx_lo, NULL, NULL, &idx_width, NULL, NULL); > >> > >> idx_lo to idx_lo+ idx_width > >> > >> are the same indices I'd get if I called > >> > >> VecGetOwnershipRange(vec, &idx_low, &idx_hi); > >> > >> Can I do this? How? > > > > What's wrong with DMCreateGlobalVector()? > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Jan 1 14:06:29 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 1 Jan 2014 14:06:29 -0600 Subject: [petsc-users] dmda and vec distribution In-Reply-To: References: <87eh4rjxqq.fsf@jedbrown.org> Message-ID: <1098F4AF-C28E-44FE-91A0-541B996DC5AF@mcs.anl.gov> On Jan 1, 2014, at 1:48 PM, Gideon Simpson wrote: > I'll try that, but I'm still a bit confused over the relationship between DMDA and Vec objects. > > Supposing I called DMDACreate1d with M as my global dimension and dof as the number of degrees of freedom. So this is really managing M * dof scalars. When I call DMCreateGlobalVector, isn't that associated with an M * dof size vector? I really just want to clone a vector of size M, but with the same partitioning. > You should create two DM objects: one with a dof argument > 1 and one with a dof argument of 1. Now use the DMCreateGlobalVector() on the one with dof of 1 to create the vector of total size M. When you create DMDA objects with all other arguments the same except the dof they are guaranteed to have the same parallel distribution. Barry > -gideon > > On Jan 1, 2014, at 2:41 PM, Jed Brown wrote: > >> Gideon Simpson writes: >> >>> Suppose I have a 1D dmda structure distributed across N processors, >>> where there are some number of degrees of freedom (dof) associated >>> with each element. Now, suppose I want to have a vec also distributed >>> across the N processors, but distributed "in the same way" as the >>> dmda. That is to say, if I call >>> >>> DMDAGetCorners(da, &idx_lo, NULL, NULL, &idx_width, NULL, NULL); >>> >>> idx_lo to idx_lo+ idx_width >>> >>> are the same indices I'd get if I called >>> >>> VecGetOwnershipRange(vec, &idx_low, &idx_hi); >>> >>> Can I do this? How? >> >> What's wrong with DMCreateGlobalVector()? > From gideon.simpson at gmail.com Wed Jan 1 14:13:43 2014 From: gideon.simpson at gmail.com (Gideon Simpson) Date: Wed, 1 Jan 2014 15:13:43 -0500 Subject: [petsc-users] dmda and vec distribution In-Reply-To: <1098F4AF-C28E-44FE-91A0-541B996DC5AF@mcs.anl.gov> References: <87eh4rjxqq.fsf@jedbrown.org> <1098F4AF-C28E-44FE-91A0-541B996DC5AF@mcs.anl.gov> Message-ID: <6C2091E9-9392-4DF9-BBE0-BD15C12EA721@gmail.com> On Jan 1, 2014, at 3:06 PM, Barry Smith wrote: > > On Jan 1, 2014, at 1:48 PM, Gideon Simpson wrote: > >> I'll try that, but I'm still a bit confused over the relationship between DMDA and Vec objects. >> >> Supposing I called DMDACreate1d with M as my global dimension and dof as the number of degrees of freedom. So this is really managing M * dof scalars. When I call DMCreateGlobalVector, isn't that associated with an M * dof size vector? I really just want to clone a vector of size M, but with the same partitioning. >> > You should create two DM objects: one with a dof argument > 1 and one with a dof argument of 1. Now use the DMCreateGlobalVector() on the one with dof of 1 to create the vector of total size M. > > When you create DMDA objects with all other arguments the same except the dof they are guaranteed to have the same parallel distribution. > This is somehow enforced as soon as PetscInitialize is called? -gideon > Barry > > >> -gideon >> >> On Jan 1, 2014, at 2:41 PM, Jed Brown wrote: >> >>> Gideon Simpson writes: >>> >>>> Suppose I have a 1D dmda structure distributed across N processors, >>>> where there are some number of degrees of freedom (dof) associated >>>> with each element. Now, suppose I want to have a vec also distributed >>>> across the N processors, but distributed "in the same way" as the >>>> dmda. That is to say, if I call >>>> >>>> DMDAGetCorners(da, &idx_lo, NULL, NULL, &idx_width, NULL, NULL); >>>> >>>> idx_lo to idx_lo+ idx_width >>>> >>>> are the same indices I'd get if I called >>>> >>>> VecGetOwnershipRange(vec, &idx_low, &idx_hi); >>>> >>>> Can I do this? How? >>> >>> What's wrong with DMCreateGlobalVector()? >> > From jedbrown at mcs.anl.gov Wed Jan 1 14:17:14 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Wed, 01 Jan 2014 14:17:14 -0600 Subject: [petsc-users] dmda and vec distribution In-Reply-To: <6C2091E9-9392-4DF9-BBE0-BD15C12EA721@gmail.com> References: <87eh4rjxqq.fsf@jedbrown.org> <1098F4AF-C28E-44FE-91A0-541B996DC5AF@mcs.anl.gov> <6C2091E9-9392-4DF9-BBE0-BD15C12EA721@gmail.com> Message-ID: <8761q3jw39.fsf@jedbrown.org> Gideon Simpson writes: >> When you create DMDA objects with all other arguments the same >> except the dof they are guaranteed to have the same parallel >> distribution. >> > > This is somehow enforced as soon as PetscInitialize is called? It has nothing to do with PetscInitialize. The algorithm to choose a partition does not look at dof, so it is guaranteed to be the same. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Wed Jan 1 14:33:32 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 1 Jan 2014 14:33:32 -0600 Subject: [petsc-users] dmda and vec distribution In-Reply-To: <6C2091E9-9392-4DF9-BBE0-BD15C12EA721@gmail.com> References: <87eh4rjxqq.fsf@jedbrown.org> <1098F4AF-C28E-44FE-91A0-541B996DC5AF@mcs.anl.gov> <6C2091E9-9392-4DF9-BBE0-BD15C12EA721@gmail.com> Message-ID: On Jan 1, 2014, at 2:13 PM, Gideon Simpson wrote: > > On Jan 1, 2014, at 3:06 PM, Barry Smith wrote: > >> >> On Jan 1, 2014, at 1:48 PM, Gideon Simpson wrote: >> >>> I'll try that, but I'm still a bit confused over the relationship between DMDA and Vec objects. >>> >>> Supposing I called DMDACreate1d with M as my global dimension and dof as the number of degrees of freedom. So this is really managing M * dof scalars. When I call DMCreateGlobalVector, isn't that associated with an M * dof size vector? I really just want to clone a vector of size M, but with the same partitioning. >>> >> You should create two DM objects: one with a dof argument > 1 and one with a dof argument of 1. Now use the DMCreateGlobalVector() on the one with dof of 1 to create the vector of total size M. >> >> When you create DMDA objects with all other arguments the same except the dof they are guaranteed to have the same parallel distribution. >> > > This is somehow enforced as soon as PetscInitialize is called? No, nothing to do with PetscInitialize(). It is simply that when a DMDA object is created all the dof values for a grid point are always on the same process hence it doesn?t matter what dof is, the same grid points are always on the same process for any such DMDA regardless of what its dof is. Barry > > -gideon > > >> Barry >> >> >>> -gideon >>> >>> On Jan 1, 2014, at 2:41 PM, Jed Brown wrote: >>> >>>> Gideon Simpson writes: >>>> >>>>> Suppose I have a 1D dmda structure distributed across N processors, >>>>> where there are some number of degrees of freedom (dof) associated >>>>> with each element. Now, suppose I want to have a vec also distributed >>>>> across the N processors, but distributed "in the same way" as the >>>>> dmda. That is to say, if I call >>>>> >>>>> DMDAGetCorners(da, &idx_lo, NULL, NULL, &idx_width, NULL, NULL); >>>>> >>>>> idx_lo to idx_lo+ idx_width >>>>> >>>>> are the same indices I'd get if I called >>>>> >>>>> VecGetOwnershipRange(vec, &idx_low, &idx_hi); >>>>> >>>>> Can I do this? How? >>>> >>>> What's wrong with DMCreateGlobalVector()? >>> >> > From yaakoub at tacc.utexas.edu Wed Jan 1 17:01:39 2014 From: yaakoub at tacc.utexas.edu (Yaakoub El Khamra) Date: Wed, 1 Jan 2014 17:01:39 -0600 Subject: [petsc-users] Fortran bindings for functions in plex In-Reply-To: <87ha9njxtq.fsf@jedbrown.org> References: <87ha9njxtq.fsf@jedbrown.org> Message-ID: Thank you sir I will do that for now. Regards Yaakoub El Khamra On Wed, Jan 1, 2014 at 1:39 PM, Jed Brown wrote: > Yaakoub El Khamra writes: > > > Greetings > > I realize the fortran bindings are on their way but are there any tricks > I > > can use to generate fortran bindings? Case in point DMLabelCreate in: > > petsc/src/dm/impls/plex/plexlabel.c . > > Every public function in PETSc is supposed to have a man page. Matt has > neglected that rule in a number of places with DMPlex, but hopefully > will create the man pages before we release petsc-3.5. > > Most man pages include the markup to generate Fortran stubs. Functions > that pass strings, including DMLabelCreate and all the XXSetType, need > custom bindings. You can look at the ftn-custom bindings for XXSetType > to see how it's done. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Thu Jan 2 04:11:32 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 2 Jan 2014 04:11:32 -0600 Subject: [petsc-users] query DMPlexCreateSection Message-ID: Hello, I am trying to use DMPlexCreateSection from fortran. I was able to solve a Poisson equation earlier using DMPlex for handling mesh data. Now i need to solve a system of equations: (poisson + continuity equations) - div (grad phi) = (C + n) --- (1) div (J ) = 0 --------------- (2) J = n grad(phi) ( C is constant) Simulation domain is defined as, rectangular regions 1 and 2 shown below. ------------- | 1 | ------------- | | | 2 | | | -------------- Now, equation 1 is defined in region 1 and 2 and equation 2 is defined only for region 2. How do i setup the section ? DMPlexCreateSection applies the given DOF layout per cell to all cells in the mesh. I am not sure if all the function calls inside DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible from Fotran. Thanks Reddy -- ----------------------------------------------------- Dharmendar Reddy Palle From cedric.doucet at inria.fr Thu Jan 2 08:08:24 2014 From: cedric.doucet at inria.fr (Cedric Doucet) Date: Thu, 2 Jan 2014 15:08:24 +0100 (CET) Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: Message-ID: <1092034857.1669214.1388671704261.JavaMail.root@inria.fr> Hello, indeed, I need to have a generalized version of DMPlexCreateFromCellList function which can take an hybrid mesh as an input parameter. Modern mesh generators often provide mixed generation functionalities (e.g. gmsh which can generate pyramids and prisms). As a matter of fact, cells are never numbered independently of vertices in hybrid meshes because different generators are used (structured and unstructured ones). >From a practical point of view, it is far much easier to let each generator number its own cells without renumbering shared vertices. Therefore, cells of hybrid meshes are sorted in a canonical way: cells of generator 1, cells of generator 2, etc. I deeply think that this new version is very useful for real-life applications. Please let me know when this new version will be available. Thank you very much, C?dric Doucet ----- Mail original ----- > De: "Matthew Knepley" > ?: "Cedric Doucet" > Cc: petsc-users at mcs.anl.gov > Envoy?: Jeudi 31 Octobre 2013 14:13:14 > Objet: Re: [petsc-users] DMPlexCreateFromCellList and hybrid meshes > On Thu, Oct 31, 2013 at 5:20 AM, Cedric Doucet < > cedric.doucet at inria.fr > wrote: > > Thank you very much for your help. > > > Do you plan to add this code to Petsc? > > > It would be better for us to call an official Petsc function than > > maintaining a Petsc-style code into our C++ software. > > If this is really what you need, then I will put it in. However, I > intended this to be used primarily for mesh generators, since they > tend to number cells and vertices independently and have the int and > double types hardwired. > If you are writing your own code, please consider > DMPlexCreateFromDAG() which has the flexibility for cell topology > that you > want. The main differences are that it uses PETSc types and a single > contiguous numbering. Would this work for you? > Thanks, > Matt > > Best regards, > > > C?dric Doucet > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > Envoy?: Mardi 29 Octobre 2013 17:24:03 > > > > > > Objet: Re: [petsc-users] DMPlexCreateFromCellList and hybrid > > > meshes > > > > > > On Tue, Oct 29, 2013 at 10:24 AM, Cedric Doucet < > > > cedric.doucet at inria.fr > wrote: > > > > > > > Hello, > > > > > > > > > > I have a short question about the code I need to modify. > > > > > > > > > > As far as I understand, numCorner should be replaced by an > > > > array > > > > numCorners[numCells] containing the number of vertices of each > > > > cell. > > > > > > > > > > The body of DMPlexBuildFromCellList_Private function becomes > > > > > > > > > > --------------------------------------------------------------------------------------------------------------------------------------- > > > > > > > > > > ierr = DMPlexSetChart(dm, 0, > > > > numCells+numVertices);CHKERRQ(ierr); > > > > > > > > > maxCorners = 0; > > > > > > > for (c = 0; c < numCells; ++c) { > > > > > > > > > > ierr = DMPlexSetConeSize(dm, c, numCorners[c]);CHKERRQ(ierr); > > > > > > > > > maxCorners = PetscMax(maxCorners, numCorners[c]); > > > > > > > } > > > > > > > > > > ierr = DMSetUp(dm);CHKERRQ(ierr); > > > > > > > > > ierr = DMGetWorkArray(dm, maxCorners, PETSC_INT, > > > &cone);CHKERRQ(ierr); > > > > > > > for (c = 0, off = 0; c < numCells; ++c) { > > > > > > > > > > for (p = 0; p < numCorners[c]; ++p) { > > > > > > > > > > cone[p] = cells[off+p]+numCells; > > > > > > > > > > } > > > > > > > > > > ierr = DMPlexSetCone(dm, c, cone);CHKERRQ(ierr); > > > > > > > > > off += numCorners[c]; > > > > > > > } > > > > > > > > > ierr = DMRestoreWorkArray(dm, maxCorners, PETSC_INT, > > > &cone);CHKERRQ(ierr); > > > > > > > ierr = DMPlexSymmetrize(dm);CHKERRQ(ierr); > > > > > > > > > > ierr = DMPlexStratify(dm);CHKERRQ(ierr); > > > > > > > > > Matt > > > > > > > ------------------------------------------------------------------------------------------------------------------------------------------ > > > > > > > > > > However, I am not quite sure that DMGetWorkArray and > > > > DMRestoreWorkArray should be used like this. > > > > > > > > > > I guess that DMRestoreWorkArray behaves like free function in > > > > ansi > > > > c > > > > but I am not sure. > > > > > > > > > > Do you think that calling DMGetWorkArray and DMRestoreWorkArray > > > > inside a loop is a good thing from the point of view of > > > > computational time and memory management? > > > > > > > > > > Note: the best way to do this may be to first sort cells by > > > > numCorners to avoid many calls to DMGetWorkArray and > > > > DMRestoreWorkArray. This is actually what I have in my own code > > > > but > > > > I would like to maintain Petsc's philosophy. > > > > > > > > > > Thanks, > > > > > > > > > > C?dric > > > > > > > > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > > > > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > > > > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > > > > > > > > > > Envoy?: Vendredi 25 Octobre 2013 16:31:59 > > > > > > > > > > > > > > > Objet: Re: [petsc-users] DMPlexCreateFromCellList and hybrid > > > > > meshes > > > > > > > > > > > > > > > On Fri, Oct 25, 2013 at 7:23 AM, Cedric Doucet < > > > > > cedric.doucet at inria.fr > wrote: > > > > > > > > > > > > > > > > Hello, > > > > > > > > > > > > > > > > > > > > > I've noticed that DMPlexCreateFromCellList assumes that > > > > > > cells > > > > > > have > > > > > > the same number of vertices (numcorners argument). > > > > > > > > > > > > > > > > > > > > > What should be done when one wants to create a DMPlex from > > > > > > a > > > > > > mesh > > > > > > containing different types of cells? > > > > > > > > > > > > > > > > > > > > > Does one have to create several DMPlex structures and merge > > > > > > them? > > > > > > > > > > > > > > > > > > > > > Does one have to create a unique DMPlex by hand? > > > > > > > > > > > > > > > > > > > > The code is very short: > > > > > > > > > > > > > > > ierr = DMPlexSetChart(dm, 0, > > > > > numCells+numVertices);CHKERRQ(ierr); > > > > > > > > > > > > > > > for (c = 0; c < numCells; ++c) { > > > > > > > > > > > > > > > ierr = DMPlexSetConeSize(dm, c, numCorners);CHKERRQ(ierr); > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > ierr = DMSetUp(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > ierr = DMGetWorkArray(dm, numCorners, PETSC_INT, > > > > > &cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > for (c = 0; c < numCells; ++c) { > > > > > > > > > > > > > > > for (p = 0; p < numCorners; ++p) { > > > > > > > > > > > > > > > cone[p] = cells[c*numCorners+p]+numCells; > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > ierr = DMPlexSetCone(dm, c, cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > ierr = DMRestoreWorkArray(dm, numCorners, PETSC_INT, > > > > > &cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > ierr = DMPlexSymmetrize(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > ierr = DMPlexStratify(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > This code is all in plexcreate.c. If you want different > > > > > cells, > > > > > you > > > > > can change numCorners for each cell. > > > > > > > > > > > > > > > I could make a convenience form if necessary. > > > > > > > > > > > > > > > Matt > > > > > > > > > > > > > > > > Thank you very much for your help. > > > > > > > > > > > > > > > > > > > > > C?dric > > > > > > > > > > > > > > > > > > > > -- > > > > > > > > > > > > > > > What most experimenters take for granted before they begin > > > > > their > > > > > experiments is infinitely more interesting than any results > > > > > to > > > > > which > > > > > their experiments lead. > > > > > > > > > > > > > > > -- Norbert Wiener > > > > > > > > > > > > > -- > > > > > > What most experimenters take for granted before they begin their > > > experiments is infinitely more interesting than any results to > > > which > > > their experiments lead. > > > > > > -- Norbert Wiener > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From song.gao2 at mail.mcgill.ca Thu Jan 2 09:04:26 2014 From: song.gao2 at mail.mcgill.ca (Song Gao) Date: Thu, 2 Jan 2014 10:04:26 -0500 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> Message-ID: Thanks, Barry. I mean 2) providing a function that I want PETSc to difference to evaluate the matrix vector product. I want to make a slight modification of the matrix after PETSc evaluate the matrix vector product. So I think provide another different function is a feasible way to do that. On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith wrote: > > On Jan 1, 2014, at 11:09 AM, Song Gao wrote: > > > Dear all, > > > > Happy new year! > > > > I'm using the matrix-free method to solve NS equations. I call the > SNESSetFunction to set the RHS function. I think SNES also uses that RHS > function to evaluate the matrix vector product. > > Yes, PETSc differences this function to evaluate the matrix vector > product. > > > > > But I want to set one function to evaluate the residual, and another > different function to evaluate the matrix vector product. > > Are you providing a function that > > 1) actually evaluates the matrix vector product or are you > > 2) providing a function that you want PETSc to difference to evaluate > the matrix vector product? > > > How can I do that? Does MatMFFDSetFunction do this job? > > For 2) yes, but if the function you provide is different than the > function provided with SNESSetFunction then the matrix-vector product > obtained from differencing it will not be ?correct? Jacobian for the > SNESSetFunction() you are providing so I don?t see why you would do it. > > For 1) you should use MatCreateShell() and > MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to > SNESSetJacobian(), then PETSc will use that ?matrix? to do its > matrix-vector products. > > Barry > > > > > > > Any suggestion is appreciated. Thank you. > > > > > > Song > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Thu Jan 2 09:20:37 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Thu, 02 Jan 2014 09:20:37 -0600 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> Message-ID: <87fvp6wgu2.fsf@jedbrown.org> Song Gao writes: > Thanks, Barry. > > I mean 2) providing a function that I want PETSc to difference to evaluate > the matrix vector product. > > I want to make a slight modification of the matrix after PETSc evaluate the > matrix vector product. Performing a matrix-vector product is not supposed to modify the matrix. It's unlikely that you really want this. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Thu Jan 2 09:56:53 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 2 Jan 2014 09:56:53 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: Message-ID: On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy wrote: > Hello, > I am trying to use DMPlexCreateSection from fortran. I was > able to solve a Poisson equation earlier using DMPlex for handling > mesh data. > > Now i need to solve a system of equations: (poisson + continuity equations) > > - div (grad phi) = (C + n) --- (1) > div (J ) = 0 --------------- (2) > J = n grad(phi) > ( C is constant) > Simulation domain is defined as, rectangular regions 1 and 2 shown below. > > ------------- > | 1 | > ------------- > | | > | 2 | > | | > -------------- > > Now, equation 1 is defined in region 1 and 2 > and equation 2 is defined only for region 2. > > How do i setup the section ? DMPlexCreateSection applies the given > DOF layout per cell to all cells in the mesh. > > I am not sure if all the function calls inside > DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible > from Fotran. > You don't want them anyway since they apply to the whole domain. The control flow could be: DMPlexSetChart() DMPlexSetDof() and DMPlexSetFieldDof() DMPlexSetDof() and DMPlexSetFieldDof() DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() DMPlexSetUp() DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() We could try and package some of this up if it looks generic. Thanks, Matt > Thanks > Reddy > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 2 09:59:03 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 2 Jan 2014 09:59:03 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: Message-ID: On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley wrote: > On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy wrote: > >> Hello, >> I am trying to use DMPlexCreateSection from fortran. I was >> able to solve a Poisson equation earlier using DMPlex for handling >> mesh data. >> >> Now i need to solve a system of equations: (poisson + continuity >> equations) >> >> - div (grad phi) = (C + n) --- (1) >> div (J ) = 0 --------------- (2) >> J = n grad(phi) >> ( C is constant) >> Simulation domain is defined as, rectangular regions 1 and 2 shown below. >> >> ------------- >> | 1 | >> ------------- >> | | >> | 2 | >> | | >> -------------- >> >> Now, equation 1 is defined in region 1 and 2 >> and equation 2 is defined only for region 2. >> >> How do i setup the section ? DMPlexCreateSection applies the given >> DOF layout per cell to all cells in the mesh. >> >> I am not sure if all the function calls inside >> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible >> from Fotran. >> > > You don't want them anyway since they apply to the whole domain. The > control flow could be: > Replace DMPlex with PetscSection. I am tired. Thanks, Matt > DMPlexSetChart() > > DMPlexSetDof() and DMPlexSetFieldDof() > > DMPlexSetDof() and DMPlexSetFieldDof() > > DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > DMPlexSetUp() > > DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() > > We could try and package some of this up if it looks generic. > > Thanks, > > Matt > > >> Thanks >> Reddy >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 2 10:01:24 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 2 Jan 2014 10:01:24 -0600 Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: <1092034857.1669214.1388671704261.JavaMail.root@inria.fr> References: <1092034857.1669214.1388671704261.JavaMail.root@inria.fr> Message-ID: On Thu, Jan 2, 2014 at 8:08 AM, Cedric Doucet wrote: > > Hello, > > indeed, I need to have a generalized version of DMPlexCreateFromCellList > function which can take an hybrid mesh as an input parameter. > What interface? > Modern mesh generators often provide mixed generation functionalities > (e.g. gmsh which can generate pyramids and prisms). > As a matter of fact, cells are never numbered independently of vertices in > hybrid meshes because different generators are used (structured and > unstructured ones). > From a practical point of view, it is far much easier to let each > generator number its own cells without renumbering shared vertices. > Therefore, cells of hybrid meshes are sorted in a canonical way: cells of > generator 1, cells of generator 2, etc. > I don't understand what you want here. Its imprecise. Matt > I deeply think that this new version is very useful for real-life > applications. > Please let me know when this new version will be available. > > Thank you very much, > > C?dric Doucet > > > > > > ------------------------------ > > *De: *"Matthew Knepley" > *?: *"Cedric Doucet" > *Cc: *petsc-users at mcs.anl.gov > *Envoy?: *Jeudi 31 Octobre 2013 14:13:14 > *Objet: *Re: [petsc-users] DMPlexCreateFromCellList and hybrid meshes > > On Thu, Oct 31, 2013 at 5:20 AM, Cedric Doucet wrote: > >> >> Thank you very much for your help. >> Do you plan to add this code to Petsc? >> It would be better for us to call an official Petsc function than >> maintaining a Petsc-style code into our C++ software. >> > > If this is really what you need, then I will put it in. However, I > intended this to be used primarily for mesh generators, since they > tend to number cells and vertices independently and have the int and > double types hardwired. > > If you are writing your own code, please consider DMPlexCreateFromDAG() > which has the flexibility for cell topology that you > want. The main differences are that it uses PETSc types and a single > contiguous numbering. Would this work for you? > > Thanks, > > Matt > > >> Best regards, >> >> C?dric Doucet >> >> >> >> ------------------------------ >> >> *De: *"Matthew Knepley" >> *?: *"Cedric Doucet" >> *Cc: *petsc-users at mcs.anl.gov >> *Envoy?: *Mardi 29 Octobre 2013 17:24:03 >> *Objet: *Re: [petsc-users] DMPlexCreateFromCellList and hybrid meshes >> >> On Tue, Oct 29, 2013 at 10:24 AM, Cedric Doucet wrote: >> >>> Hello, >>> >>> I have a short question about the code I need to modify. >>> As far as I understand, numCorner should be replaced by an array >>> numCorners[numCells] containing the number of vertices of each cell. >>> The body of DMPlexBuildFromCellList_Private function becomes >>> >>> --------------------------------------------------------------------------------------------------------------------------------------- >>> ierr = DMPlexSetChart(dm, 0, numCells+numVertices);CHKERRQ(ierr); >>> >> maxCorners = 0; >> >>> for (c = 0; c < numCells; ++c) { >>> ierr = DMPlexSetConeSize(dm, c, numCorners[c]);CHKERRQ(ierr); >>> >> maxCorners = PetscMax(maxCorners, numCorners[c]); >> >>> } >>> ierr = DMSetUp(dm);CHKERRQ(ierr); >>> >> >> ierr = DMGetWorkArray(dm, maxCorners, PETSC_INT, &cone);CHKERRQ(ierr); >> >> >>> for (c = 0, off = 0; c < numCells; ++c) { >>> for (p = 0; p < numCorners[c]; ++p) { >>> cone[p] = cells[off+p]+numCells; >>> } >>> ierr = DMPlexSetCone(dm, c, cone);CHKERRQ(ierr); >>> >> off += numCorners[c]; >> >>> } >>> >> ierr = DMRestoreWorkArray(dm, maxCorners, PETSC_INT, >> &cone);CHKERRQ(ierr); >> >>> >> >>> >>> ierr = DMPlexSymmetrize(dm);CHKERRQ(ierr); >>> ierr = DMPlexStratify(dm);CHKERRQ(ierr); >>> >> >> Matt >> >> >>> >>> ------------------------------------------------------------------------------------------------------------------------------------------ >>> However, I am not quite sure that DMGetWorkArray and DMRestoreWorkArray >>> should be used like this. >>> I guess that DMRestoreWorkArray behaves like free function in ansi c but >>> I am not sure. >>> Do you think that calling DMGetWorkArray and DMRestoreWorkArray inside a >>> loop is a good thing from the point of view of computational time and >>> memory management? >>> >>> Note: the best way to do this may be to first sort cells by numCorners >>> to avoid many calls to DMGetWorkArray and DMRestoreWorkArray. This is >>> actually what I have in my own code but I would like to maintain Petsc's >>> philosophy. >>> >>> Thanks, >>> >>> C?dric >>> >>> >>> >>> >>> >>> ------------------------------ >>> >>> *De: *"Matthew Knepley" >>> *?: *"Cedric Doucet" >>> *Cc: *petsc-users at mcs.anl.gov >>> *Envoy?: *Vendredi 25 Octobre 2013 16:31:59 >>> *Objet: *Re: [petsc-users] DMPlexCreateFromCellList and hybrid meshes >>> >>> On Fri, Oct 25, 2013 at 7:23 AM, Cedric Doucet wrote: >>> >>>> Hello, >>>> >>>> I've noticed that DMPlexCreateFromCellList assumes that cells have the >>>> same number of vertices (numcorners argument). >>>> What should be done when one wants to create a DMPlex from a mesh >>>> containing different types of cells? >>>> Does one have to create several DMPlex structures and merge them? >>>> Does one have to create a unique DMPlex by hand? >>>> >>> >>> The code is very short: >>> >>> ierr = DMPlexSetChart(dm, 0, numCells+numVertices);CHKERRQ(ierr); >>> for (c = 0; c < numCells; ++c) { >>> ierr = DMPlexSetConeSize(dm, c, numCorners);CHKERRQ(ierr); >>> } >>> ierr = DMSetUp(dm);CHKERRQ(ierr); >>> ierr = DMGetWorkArray(dm, numCorners, PETSC_INT, &cone);CHKERRQ(ierr); >>> for (c = 0; c < numCells; ++c) { >>> for (p = 0; p < numCorners; ++p) { >>> cone[p] = cells[c*numCorners+p]+numCells; >>> } >>> ierr = DMPlexSetCone(dm, c, cone);CHKERRQ(ierr); >>> } >>> ierr = DMRestoreWorkArray(dm, numCorners, PETSC_INT, >>> &cone);CHKERRQ(ierr); >>> ierr = DMPlexSymmetrize(dm);CHKERRQ(ierr); >>> ierr = DMPlexStratify(dm);CHKERRQ(ierr); >>> >>> This code is all in plexcreate.c. If you want different cells, you can >>> change numCorners for each cell. >>> I could make a convenience form if necessary. >>> >>> Matt >>> >>> >>>> >>>> Thank you very much for your help. >>>> >>>> C?dric >>>> >>>> >>>> >>>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From ling.zou at inl.gov Thu Jan 2 16:14:00 2014 From: ling.zou at inl.gov (Zou (Non-US), Ling) Date: Thu, 2 Jan 2014 15:14:00 -0700 Subject: [petsc-users] Modify RHS values at each iteration In-Reply-To: <87mwkyvsdu.fsf@jedbrown.org> References: <528DA268.1030704@gmail.com> <87zjoywaj9.fsf@jedbrown.org> <528DB900.6000704@gmail.com> <87pppuw65u.fsf@jedbrown.org> <528DDB13.7080208@gmail.com> <87mwkyvsdu.fsf@jedbrown.org> Message-ID: Hi Jed. I have a similar situation here. I am intentionally testing an iterative method. It requires me to do some handling (for example copying the current solution vector out) right after a nonlinear iteration is finished, but before anything happening of the next nonlinear iteration. Is there any way to do so? Best, Ling On Thu, Nov 21, 2013 at 5:41 AM, Jed Brown wrote: > TAY wee-beng writes: > > > Hi Jed, > > > > I need a solve a Poisson equation, which is part of my finite volume CFD > > code. > > > > The RHS terms are calculated from the velocity. > > > > In the standard mtd, the RHS terms are calculated from the velocity, > > which then solves the Poisson eqn to get the pressure. > > > > Now, to improve the accuracy of the pressure obtained, a paper suggested > > obtaining the pressure from the velocity in 1 iteration. Then use the > > new pressure for the momentum eqn to get a more accurate intermediate > > velocity. The RHS terms are recomputed again using the new velocity, > > which is then used to calculate the new pressure. This cycle goes on > > until the pressure converges to a certain value. > > This is a crude iterative method for solving a coupled problem. I > recommend that you solve the coupled problem. See the section of the > user's manual on solving block problems, and the examples in PETSc that > solve Stokes-type problems. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Thu Jan 2 16:20:34 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Thu, 02 Jan 2014 16:20:34 -0600 Subject: [petsc-users] Modify RHS values at each iteration In-Reply-To: References: <528DA268.1030704@gmail.com> <87zjoywaj9.fsf@jedbrown.org> <528DB900.6000704@gmail.com> <87pppuw65u.fsf@jedbrown.org> <528DDB13.7080208@gmail.com> <87mwkyvsdu.fsf@jedbrown.org> Message-ID: <87fvp6uitp.fsf@jedbrown.org> "Zou (Non-US), Ling" writes: > Hi Jed. I have a similar situation here. I am intentionally testing an > iterative method. It requires me to do some handling (for example copying > the current solution vector out) right after a nonlinear iteration is > finished, but before anything happening of the next nonlinear iteration. Is > there any way to do so? Put that in a SNES monitor or perhaps SNESLineSearchSetPostCheck. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From ling.zou at inl.gov Thu Jan 2 20:20:25 2014 From: ling.zou at inl.gov (Zou (Non-US), Ling) Date: Thu, 2 Jan 2014 19:20:25 -0700 Subject: [petsc-users] Modify RHS values at each iteration In-Reply-To: <87fvp6uitp.fsf@jedbrown.org> References: <528DA268.1030704@gmail.com> <87zjoywaj9.fsf@jedbrown.org> <528DB900.6000704@gmail.com> <87pppuw65u.fsf@jedbrown.org> <528DDB13.7080208@gmail.com> <87mwkyvsdu.fsf@jedbrown.org> <87fvp6uitp.fsf@jedbrown.org> Message-ID: Thanks a lot. On Thu, Jan 2, 2014 at 3:20 PM, Jed Brown wrote: > "Zou (Non-US), Ling" writes: > > > Hi Jed. I have a similar situation here. I am intentionally testing an > > iterative method. It requires me to do some handling (for example copying > > the current solution vector out) right after a nonlinear iteration is > > finished, but before anything happening of the next nonlinear iteration. > Is > > there any way to do so? > > Put that in a SNES monitor or perhaps SNESLineSearchSetPostCheck. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From roguzsel at gmail.com Thu Jan 2 21:34:47 2014 From: roguzsel at gmail.com (=?UTF-8?B?Ui4gT8SfdXogU2Vsdml0b3Bp?=) Date: Fri, 3 Jan 2014 05:34:47 +0200 Subject: [petsc-users] Columnwise and 2D partitioning for matrices that have irregular sparsity patterns Message-ID: Hello, Is it possible to partition a parallel matrix in PETSc as follows: A B C D E F G H I The blocks A-D-G belong to processor 0 (A is the diagonal block, D and G are off-diagonal blocks) The blocks B-E-H belong to processor 1 (E is the diagonal block, B and H are off-diagonal blocks) The blocks C-F-I belong to processor 2 (I is the diagonal block, C and F are off-diagonal blocks) Or, is it possible to have nine processors and each has a block of the matrix above? Block A belongs to processor 0, block B belongs to processor 1, and so on... As far as I read from documentation, PETSc always seems to be considering a rowwise partitioning, where blocks A-B-C belong to processor 0, D-E-F belong to processor 1 and G-H-I belong to processor 2. Is there a way to obtain the partitioning schemes I described above? Thanks in advance. -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Thu Jan 2 21:41:16 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Thu, 02 Jan 2014 21:41:16 -0600 Subject: [petsc-users] Columnwise and 2D partitioning for matrices that have irregular sparsity patterns In-Reply-To: References: Message-ID: <874n5lvijn.fsf@jedbrown.org> "R. O?uz Selvitopi" writes: > Hello, > > Is it possible to partition a parallel matrix in PETSc as follows: > > A B C > D E F > G H I > > The blocks A-D-G belong to processor 0 (A is the diagonal block, D and > G are off-diagonal blocks) > > The blocks B-E-H belong to processor 1 (E is the diagonal block, B and > H are off-diagonal blocks) > > The blocks C-F-I belong to processor 2 (I is the diagonal block, C and > F are off-diagonal blocks) Assemble the transpose, then either use MatMultTranspose or MatCreateTranspose. > Or, is it possible to have nine processors and each has a block of the > matrix above? Block A belongs to processor 0, block B belongs to > processor 1, and so on... Not with sparse matrices (except using MatShell, in which case you are responsible for the implementation). You can do it for dense matrices (see MatElemental). -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From roguzsel at gmail.com Thu Jan 2 21:55:56 2014 From: roguzsel at gmail.com (=?UTF-8?B?Ui4gT8SfdXogU2Vsdml0b3Bp?=) Date: Fri, 3 Jan 2014 05:55:56 +0200 Subject: [petsc-users] Columnwise and 2D partitioning for matrices that have irregular sparsity patterns In-Reply-To: <874n5lvijn.fsf@jedbrown.org> References: <874n5lvijn.fsf@jedbrown.org> Message-ID: That was fast. Thanks. On Fri, Jan 3, 2014 at 5:41 AM, Jed Brown wrote: > "R. O?uz Selvitopi" writes: > > > Hello, > > > > Is it possible to partition a parallel matrix in PETSc as follows: > > > > A B C > > D E F > > G H I > > > > The blocks A-D-G belong to processor 0 (A is the diagonal block, D and > > G are off-diagonal blocks) > > > > The blocks B-E-H belong to processor 1 (E is the diagonal block, B and > > H are off-diagonal blocks) > > > > The blocks C-F-I belong to processor 2 (I is the diagonal block, C and > > F are off-diagonal blocks) > > Assemble the transpose, then either use MatMultTranspose or > MatCreateTranspose. > > > Or, is it possible to have nine processors and each has a block of the > > matrix above? Block A belongs to processor 0, block B belongs to > > processor 1, and so on... > > Not with sparse matrices (except using MatShell, in which case you are > responsible for the implementation). You can do it for dense matrices > (see MatElemental). > -- --------- Oguz. -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Fri Jan 3 01:37:24 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 3 Jan 2014 01:37:24 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: Message-ID: Hello, I did not fully understand the flow. Need more help. If i look at the flow in DMPlexCreateSectionInitial (http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/plex.c.html#DMPlexCreateSection) 6023: for (d = 0; d <= dim; ++d) { 6024: numDofTot[d] = 0; 6025: for (f = 0; f < numFields; ++f) numDofTot[d] += numDof[f*(dim+1)+d]; 6026: } 6027: PetscSectionCreate(PetscObjectComm((PetscObject)dm), section); 6028: if (numFields > 0) { 6029: PetscSectionSetNumFields(*section, numFields); 6030: if (numComp) { 6031: for (f = 0; f < numFields; ++f) { 6032: PetscSectionSetFieldComponents(*section, f, numComp[f]); 6033: } 6034: } 6035: } 6036: DMPlexGetChart(dm, &pStart, &pEnd); 6037: PetscSectionSetChart(*section, pStart, pEnd); 6038: for (d = 0; d <= dim; ++d) { 6039: DMPlexGetDepthStratum(dm, d, &pStart, &pEnd); 6040: for (p = pStart; p < pEnd; ++p) { 6041: for (f = 0; f < numFields; ++f) { 6042: PetscSectionSetFieldDof(*section, p, f, numDof[f*(dim+1)+d]); 6043: } 6044: PetscSectionSetDof(*section, p, numDofTot[d]); 6045: } 6046: } In line 6027, number of fields for entire section is defined. Now, dose the flow in your earlier replies requires me to do that ? I.e, define numFields to 2. Then Inside the loop 6040, i need to check if the point belongs to region 1 or 2. If it belongs to region 1 then numFields is 1 and if it belongs to region 2, numFields is 2. Where do i set the number of fields in the flow you mentioned in the earlier email ? Thanks Reddy On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley wrote: > On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy > wrote: >> >> Hello, >> I am trying to use DMPlexCreateSection from fortran. I was >> able to solve a Poisson equation earlier using DMPlex for handling >> mesh data. >> >> Now i need to solve a system of equations: (poisson + continuity >> equations) >> >> - div (grad phi) = (C + n) --- (1) >> div (J ) = 0 --------------- (2) >> J = n grad(phi) >> ( C is constant) >> Simulation domain is defined as, rectangular regions 1 and 2 shown below. >> >> ------------- >> | 1 | >> ------------- >> | | >> | 2 | >> | | >> -------------- >> >> Now, equation 1 is defined in region 1 and 2 >> and equation 2 is defined only for region 2. >> >> How do i setup the section ? DMPlexCreateSection applies the given >> DOF layout per cell to all cells in the mesh. >> >> I am not sure if all the function calls inside >> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible >> from Fotran. > > > You don't want them anyway since they apply to the whole domain. The control > flow could be: > > DMPlexSetChart() > > DMPlexSetDof() and DMPlexSetFieldDof() > > DMPlexSetDof() and DMPlexSetFieldDof() > > DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > DMPlexSetUp() > > DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() > > We could try and package some of this up if it looks generic. > > Thanks, > > Matt > >> >> Thanks >> Reddy >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- From dharmareddy84 at gmail.com Fri Jan 3 01:56:21 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 3 Jan 2014 01:56:21 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: Message-ID: I think, the issue is with petscSectionSetUp which assumes all fields to have same chart. This is ok if the fields are defined at every point of the chart. On Fri, Jan 3, 2014 at 1:37 AM, Dharmendar Reddy wrote: > Hello, > I did not fully understand the flow. Need more help. > If i look at the flow in DMPlexCreateSectionInitial > (http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/plex.c.html#DMPlexCreateSection) > > 6023: for (d = 0; d <= dim; ++d) { > 6024: numDofTot[d] = 0; > 6025: for (f = 0; f < numFields; ++f) numDofTot[d] += numDof[f*(dim+1)+d]; > 6026: } > 6027: PetscSectionCreate(PetscObjectComm((PetscObject)dm), section); > 6028: if (numFields > 0) { > 6029: PetscSectionSetNumFields(*section, numFields); > 6030: if (numComp) { > 6031: for (f = 0; f < numFields; ++f) { > 6032: PetscSectionSetFieldComponents(*section, f, numComp[f]); > 6033: } > 6034: } > 6035: } > 6036: DMPlexGetChart(dm, &pStart, &pEnd); > 6037: PetscSectionSetChart(*section, pStart, pEnd); > 6038: for (d = 0; d <= dim; ++d) { > 6039: DMPlexGetDepthStratum(dm, d, &pStart, &pEnd); > 6040: for (p = pStart; p < pEnd; ++p) { > 6041: for (f = 0; f < numFields; ++f) { > 6042: PetscSectionSetFieldDof(*section, p, f, numDof[f*(dim+1)+d]); > 6043: } > 6044: PetscSectionSetDof(*section, p, numDofTot[d]); > 6045: } > 6046: } > > In line 6027, number of fields for entire section is defined. Now, > dose the flow in your earlier replies requires me to do that ? I.e, > define numFields to 2. Then > > Inside the loop 6040, i need to check if the point belongs to region 1 or 2. > > If it belongs to region 1 then numFields is 1 and if it belongs to > region 2, numFields is 2. > > Where do i set the number of fields in the flow you mentioned in the > earlier email ? > > Thanks > Reddy > > On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley wrote: >> On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy >> wrote: >>> >>> Hello, >>> I am trying to use DMPlexCreateSection from fortran. I was >>> able to solve a Poisson equation earlier using DMPlex for handling >>> mesh data. >>> >>> Now i need to solve a system of equations: (poisson + continuity >>> equations) >>> >>> - div (grad phi) = (C + n) --- (1) >>> div (J ) = 0 --------------- (2) >>> J = n grad(phi) >>> ( C is constant) >>> Simulation domain is defined as, rectangular regions 1 and 2 shown below. >>> >>> ------------- >>> | 1 | >>> ------------- >>> | | >>> | 2 | >>> | | >>> -------------- >>> >>> Now, equation 1 is defined in region 1 and 2 >>> and equation 2 is defined only for region 2. >>> >>> How do i setup the section ? DMPlexCreateSection applies the given >>> DOF layout per cell to all cells in the mesh. >>> >>> I am not sure if all the function calls inside >>> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible >>> from Fotran. >> >> >> You don't want them anyway since they apply to the whole domain. The control >> flow could be: >> >> DMPlexSetChart() >> >> DMPlexSetDof() and DMPlexSetFieldDof() >> >> DMPlexSetDof() and DMPlexSetFieldDof() >> >> DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() >> DMPlexSetUp() >> >> DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() >> >> We could try and package some of this up if it looks generic. >> >> Thanks, >> >> Matt >> >>> >>> Thanks >>> Reddy >>> >>> -- >>> ----------------------------------------------------- >>> Dharmendar Reddy Palle >> >> >> >> >> -- >> What most experimenters take for granted before they begin their experiments >> is infinitely more interesting than any results to which their experiments >> lead. >> -- Norbert Wiener > > > > -- > ----------------------------------------------------- -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From cedric.doucet at inria.fr Fri Jan 3 03:17:13 2014 From: cedric.doucet at inria.fr (Cedric Doucet) Date: Fri, 3 Jan 2014 10:17:13 +0100 (CET) Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: Message-ID: <1509252766.1792576.1388740633488.JavaMail.root@inria.fr> Hello, sorry, we talked about it few months ago. For the moment, it is assumed in DMPlexCreateFromCellList function that cells have all the same number of vertices. In other words, it means that meshes containing one and only one type of cell (from a topological viewpoint) can be handled by this function only. However, several mesh generators are able to discretize geometries by means of different kinds of cells. Resulting meshes are said to be mixed or hybrid because they contain different types of cells. To create a DMPlex structure from such a mesh, one needs to slightly modify DMPlexCreateFromCellList prototype. To my mind, the simplest way to do that is to redefine numCorners as an integer array instead of a simple integer value. Its length should be numCells and it should contain the number of vertices for each cell. Note that the length of "cells" parameter should be modified as well. But, of course, if you have a better idea about the new prototype, it's ok for me. Best regards, C?dric Doucet ----- Mail original ----- > De: "Matthew Knepley" > ?: "Cedric Doucet" > Cc: petsc-users at mcs.anl.gov > Envoy?: Jeudi 2 Janvier 2014 17:01:24 > Objet: Re: [petsc-users] DMPlexCreateFromCellList and hybrid meshes > On Thu, Jan 2, 2014 at 8:08 AM, Cedric Doucet < > cedric.doucet at inria.fr > wrote: > > Hello, > > > indeed, I need to have a generalized version of > > DMPlexCreateFromCellList function which can take an hybrid mesh as > > an input parameter. > > What interface? > > Modern mesh generators often provide mixed generation > > functionalities > > (e.g. gmsh which can generate pyramids and prisms). > > > As a matter of fact, cells are never numbered independently of > > vertices in hybrid meshes because different generators are used > > (structured and unstructured ones). > > > From a practical point of view, it is far much easier to let each > > generator number its own cells without renumbering shared vertices. > > > Therefore, cells of hybrid meshes are sorted in a canonical way: > > cells of generator 1, cells of generator 2, etc. > > I don't understand what you want here. Its imprecise. > Matt > > I deeply think that this new version is very useful for real-life > > applications. > > > Please let me know when this new version will be available. > > > Thank you very much, > > > C?dric Doucet > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > Envoy?: Jeudi 31 Octobre 2013 14:13:14 > > > > > > Objet: Re: [petsc-users] DMPlexCreateFromCellList and hybrid > > > meshes > > > > > > On Thu, Oct 31, 2013 at 5:20 AM, Cedric Doucet < > > > cedric.doucet at inria.fr > wrote: > > > > > > > Thank you very much for your help. > > > > > > > > > > Do you plan to add this code to Petsc? > > > > > > > > > > It would be better for us to call an official Petsc function > > > > than > > > > maintaining a Petsc-style code into our C++ software. > > > > > > > > > If this is really what you need, then I will put it in. However, > > > I > > > intended this to be used primarily for mesh generators, since > > > they > > > > > > tend to number cells and vertices independently and have the int > > > and > > > double types hardwired. > > > > > > If you are writing your own code, please consider > > > DMPlexCreateFromDAG() which has the flexibility for cell topology > > > that you > > > > > > want. The main differences are that it uses PETSc types and a > > > single > > > contiguous numbering. Would this work for you? > > > > > > Thanks, > > > > > > Matt > > > > > > > Best regards, > > > > > > > > > > C?dric Doucet > > > > > > > > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > > > > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > > > > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > > > > > > > > > > Envoy?: Mardi 29 Octobre 2013 17:24:03 > > > > > > > > > > > > > > > Objet: Re: [petsc-users] DMPlexCreateFromCellList and hybrid > > > > > meshes > > > > > > > > > > > > > > > On Tue, Oct 29, 2013 at 10:24 AM, Cedric Doucet < > > > > > cedric.doucet at inria.fr > wrote: > > > > > > > > > > > > > > > > Hello, > > > > > > > > > > > > > > > > > > > > > I have a short question about the code I need to modify. > > > > > > > > > > > > > > > > > > > > > As far as I understand, numCorner should be replaced by an > > > > > > array > > > > > > numCorners[numCells] containing the number of vertices of > > > > > > each > > > > > > cell. > > > > > > > > > > > > > > > > > > > > > The body of DMPlexBuildFromCellList_Private function > > > > > > becomes > > > > > > > > > > > > > > > > > > > > > --------------------------------------------------------------------------------------------------------------------------------------- > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexSetChart(dm, 0, > > > > > > numCells+numVertices);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > maxCorners = 0; > > > > > > > > > > > > > > > > for (c = 0; c < numCells; ++c) { > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexSetConeSize(dm, c, > > > > > > numCorners[c]);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > maxCorners = PetscMax(maxCorners, numCorners[c]); > > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > > > > > > > ierr = DMSetUp(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > ierr = DMGetWorkArray(dm, maxCorners, PETSC_INT, > > > > > &cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > > for (c = 0, off = 0; c < numCells; ++c) { > > > > > > > > > > > > > > > > > > > > > for (p = 0; p < numCorners[c]; ++p) { > > > > > > > > > > > > > > > > > > > > > cone[p] = cells[off+p]+numCells; > > > > > > > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexSetCone(dm, c, cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > off += numCorners[c]; > > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > > > > > > ierr = DMRestoreWorkArray(dm, maxCorners, PETSC_INT, > > > > > &cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > > ierr = DMPlexSymmetrize(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexStratify(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > Matt > > > > > > > > > > > > > > > > ------------------------------------------------------------------------------------------------------------------------------------------ > > > > > > > > > > > > > > > > > > > > > However, I am not quite sure that DMGetWorkArray and > > > > > > DMRestoreWorkArray should be used like this. > > > > > > > > > > > > > > > > > > > > > I guess that DMRestoreWorkArray behaves like free function > > > > > > in > > > > > > ansi > > > > > > c > > > > > > but I am not sure. > > > > > > > > > > > > > > > > > > > > > Do you think that calling DMGetWorkArray and > > > > > > DMRestoreWorkArray > > > > > > inside a loop is a good thing from the point of view of > > > > > > computational time and memory management? > > > > > > > > > > > > > > > > > > > > > Note: the best way to do this may be to first sort cells by > > > > > > numCorners to avoid many calls to DMGetWorkArray and > > > > > > DMRestoreWorkArray. This is actually what I have in my own > > > > > > code > > > > > > but > > > > > > I would like to maintain Petsc's philosophy. > > > > > > > > > > > > > > > > > > > > > Thanks, > > > > > > > > > > > > > > > > > > > > > C?dric > > > > > > > > > > > > > > > > > > > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > > > > > > > > > > > > > > > > > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > > > > > > > > > > > > > > > > > > > > > > > Envoy?: Vendredi 25 Octobre 2013 16:31:59 > > > > > > > > > > > > > > > > > > > > > > > > > > > > Objet: Re: [petsc-users] DMPlexCreateFromCellList and > > > > > > > hybrid > > > > > > > meshes > > > > > > > > > > > > > > > > > > > > > > > > > > > > On Fri, Oct 25, 2013 at 7:23 AM, Cedric Doucet < > > > > > > > cedric.doucet at inria.fr > wrote: > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Hello, > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > I've noticed that DMPlexCreateFromCellList assumes that > > > > > > > > cells > > > > > > > > have > > > > > > > > the same number of vertices (numcorners argument). > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > What should be done when one wants to create a DMPlex > > > > > > > > from > > > > > > > > a > > > > > > > > mesh > > > > > > > > containing different types of cells? > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Does one have to create several DMPlex structures and > > > > > > > > merge > > > > > > > > them? > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Does one have to create a unique DMPlex by hand? > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > The code is very short: > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexSetChart(dm, 0, > > > > > > > numCells+numVertices);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > for (c = 0; c < numCells; ++c) { > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexSetConeSize(dm, c, > > > > > > > numCorners);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMSetUp(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMGetWorkArray(dm, numCorners, PETSC_INT, > > > > > > > &cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > for (c = 0; c < numCells; ++c) { > > > > > > > > > > > > > > > > > > > > > > > > > > > > for (p = 0; p < numCorners; ++p) { > > > > > > > > > > > > > > > > > > > > > > > > > > > > cone[p] = cells[c*numCorners+p]+numCells; > > > > > > > > > > > > > > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexSetCone(dm, c, cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > } > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMRestoreWorkArray(dm, numCorners, PETSC_INT, > > > > > > > &cone);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexSymmetrize(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > ierr = DMPlexStratify(dm);CHKERRQ(ierr); > > > > > > > > > > > > > > > > > > > > > > > > > > > > This code is all in plexcreate.c. If you want different > > > > > > > cells, > > > > > > > you > > > > > > > can change numCorners for each cell. > > > > > > > > > > > > > > > > > > > > > > > > > > > > I could make a convenience form if necessary. > > > > > > > > > > > > > > > > > > > > > > > > > > > > Matt > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Thank you very much for your help. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > C?dric > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -- > > > > > > > > > > > > > > > > > > > > > > > > > > > > What most experimenters take for granted before they > > > > > > > begin > > > > > > > their > > > > > > > experiments is infinitely more interesting than any > > > > > > > results > > > > > > > to > > > > > > > which > > > > > > > their experiments lead. > > > > > > > > > > > > > > > > > > > > > > > > > > > > -- Norbert Wiener > > > > > > > > > > > > > > > > > > > > > > > > > > -- > > > > > > > > > > > > > > > What most experimenters take for granted before they begin > > > > > their > > > > > experiments is infinitely more interesting than any results > > > > > to > > > > > which > > > > > their experiments lead. > > > > > > > > > > > > > > > -- Norbert Wiener > > > > > > > > > > > > > -- > > > > > > What most experimenters take for granted before they begin their > > > experiments is infinitely more interesting than any results to > > > which > > > their experiments lead. > > > > > > -- Norbert Wiener > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Fri Jan 3 09:31:57 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Fri, 03 Jan 2014 09:31:57 -0600 Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: <1509252766.1792576.1388740633488.JavaMail.root@inria.fr> References: <1509252766.1792576.1388740633488.JavaMail.root@inria.fr> Message-ID: <87r48pt72q.fsf@jedbrown.org> Cedric Doucet writes: > Hello, > sorry, we talked about it few months ago. > For the moment, it is assumed in DMPlexCreateFromCellList function that cells have all the same number of vertices. > In other words, it means that meshes containing one and only one type of cell (from a topological viewpoint) can be handled by this function only. > However, several mesh generators are able to discretize geometries by means of different kinds of cells. > Resulting meshes are said to be mixed or hybrid because they contain different types of cells. > To create a DMPlex structure from such a mesh, one needs to slightly modify DMPlexCreateFromCellList prototype. Why can't you use DMPlexCreateFromDAG? You can create a non-interpolated mesh and interpolate it later if you want. Note that even for non-interpolated meshes, you often need boundary faces, in which case DMPlexCreateFromCellList would still not be sufficient. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From cedric.doucet at inria.fr Fri Jan 3 09:43:34 2014 From: cedric.doucet at inria.fr (Cedric Doucet) Date: Fri, 3 Jan 2014 16:43:34 +0100 (CET) Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: <87r48pt72q.fsf@jedbrown.org> Message-ID: <154293533.1860077.1388763814372.JavaMail.root@inria.fr> I could use DMPlexCreateFromDAG but there are several drawbacks: 1. DMPlexCreateFromDAG is not well documented; 2. other developers will have to understand a tricky data structure (DAG) to modify my code (see point 1 to understand why it is a problem);; 3. DMPlexCreateFromDAG looks like a low-level function in comparison with DMPlexCreateFromCellList which acts at a higher level: if you modify this structure, I or someone else will have to modify my code (see point 2 to understand why it is a problem); You proposed to modify DMPlexCreateFromCellList function for me and I decided to accept it after thinking about it. Did you change your mind? ----- Mail original ----- > De: "Jed Brown" > ?: "Cedric Doucet" , "Matthew Knepley" > Cc: petsc-users at mcs.anl.gov > Envoy?: Vendredi 3 Janvier 2014 16:31:57 > Objet: Re: [petsc-users] DMPlexCreateFromCellList and hybrid meshes > > Cedric Doucet writes: > > > Hello, > > sorry, we talked about it few months ago. > > For the moment, it is assumed in DMPlexCreateFromCellList function > > that cells have all the same number of vertices. > > In other words, it means that meshes containing one and only one > > type of cell (from a topological viewpoint) can be handled by this > > function only. > > However, several mesh generators are able to discretize geometries > > by means of different kinds of cells. > > Resulting meshes are said to be mixed or hybrid because they > > contain different types of cells. > > To create a DMPlex structure from such a mesh, one needs to > > slightly modify DMPlexCreateFromCellList prototype. > > Why can't you use DMPlexCreateFromDAG? You can create a > non-interpolated mesh and interpolate it later if you want. Note > that > even for non-interpolated meshes, you often need boundary faces, in > which case DMPlexCreateFromCellList would still not be sufficient. > From jedbrown at mcs.anl.gov Fri Jan 3 09:57:52 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Fri, 03 Jan 2014 09:57:52 -0600 Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: <154293533.1860077.1388763814372.JavaMail.root@inria.fr> References: <154293533.1860077.1388763814372.JavaMail.root@inria.fr> Message-ID: <87ob3tt5vj.fsf@jedbrown.org> Cedric Doucet writes: > I could use DMPlexCreateFromDAG but there are several drawbacks: > 1. DMPlexCreateFromDAG is not well documented; > 2. other developers will have to understand a tricky data structure > (DAG) to modify my code (see point 1 to understand why it is a > problem);; Every public function is supposed to have a man page. Matt neglected this rule in DMPlexCreateFromDAG and it's perfectly valid to complain about that. However, I think DMPlexCreateFromDAG provides the functionality you need, and is sufficiently general to deal with things like boundary faces which are needed for most real simulations. > 3. DMPlexCreateFromDAG looks like a low-level function in comparison > with DMPlexCreateFromCellList which acts at a higher level: if you > modify this structure, I or someone else will have to modify my code > (see point 2 to understand why it is a problem); It only uses complicated words; the data structure is basically the same as what you're asking for, with the added flexibility of being able to represent meshes containing cells with more than one topological dimension (e.g., volumes and faces). > You proposed to modify DMPlexCreateFromCellList function for me and I > decided to accept it after thinking about it. Did you change your > mind? I didn't propose that. Maybe Matt did and of course he's welcome to generalize the function. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Fri Jan 3 10:30:00 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 3 Jan 2014 10:30:00 -0600 Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: <87ob3tt5vj.fsf@jedbrown.org> References: <154293533.1860077.1388763814372.JavaMail.root@inria.fr> <87ob3tt5vj.fsf@jedbrown.org> Message-ID: On Fri, Jan 3, 2014 at 9:57 AM, Jed Brown wrote: > Cedric Doucet writes: > > > I could use DMPlexCreateFromDAG but there are several drawbacks: > > 1. DMPlexCreateFromDAG is not well documented; > > 2. other developers will have to understand a tricky data structure > > (DAG) to modify my code (see point 1 to understand why it is a > > problem);; > > Every public function is supposed to have a man page. Matt neglected > this rule in DMPlexCreateFromDAG and it's perfectly valid to complain > about that. However, I think DMPlexCreateFromDAG provides the > functionality you need, and is sufficiently general to deal with things > like boundary faces which are needed for most real simulations. > > > 3. DMPlexCreateFromDAG looks like a low-level function in comparison > > with DMPlexCreateFromCellList which acts at a higher level: if you > > modify this structure, I or someone else will have to modify my code > > (see point 2 to understand why it is a problem); > > It only uses complicated words; the data structure is basically the same > as what you're asking for, with the added flexibility of being able to > represent meshes containing cells with more than one topological > dimension (e.g., volumes and faces). > > > You proposed to modify DMPlexCreateFromCellList function for me and I > > decided to accept it after thinking about it. Did you change your > > mind? > > I didn't propose that. Maybe Matt did and of course he's welcome to > generalize the function. > DMPlexCreateFromDAG() is exactly that generalization. What is different from CreateFrmCellList()? Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Jan 3 10:31:20 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 3 Jan 2014 10:31:20 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: Message-ID: On Fri, Jan 3, 2014 at 1:37 AM, Dharmendar Reddy wrote: > Hello, > I did not fully understand the flow. Need more help. > If i look at the flow in DMPlexCreateSectionInitial > ( > http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/plex.c.html#DMPlexCreateSection > ) > > 6023: for (d = 0; d <= dim; ++d) { > 6024: numDofTot[d] = 0; > 6025: for (f = 0; f < numFields; ++f) numDofTot[d] += > numDof[f*(dim+1)+d]; > 6026: } > 6027: PetscSectionCreate(PetscObjectComm((PetscObject)dm), section); > 6028: if (numFields > 0) { > 6029: PetscSectionSetNumFields(*section, numFields); > 6030: if (numComp) { > 6031: for (f = 0; f < numFields; ++f) { > 6032: PetscSectionSetFieldComponents(*section, f, numComp[f]); > 6033: } > 6034: } > 6035: } > 6036: DMPlexGetChart(dm, &pStart, &pEnd); > 6037: PetscSectionSetChart(*section, pStart, pEnd); > 6038: for (d = 0; d <= dim; ++d) { > 6039: DMPlexGetDepthStratum(dm, d, &pStart, &pEnd); > 6040: for (p = pStart; p < pEnd; ++p) { > 6041: for (f = 0; f < numFields; ++f) { > 6042: PetscSectionSetFieldDof(*section, p, f, numDof[f*(dim+1)+d]); > 6043: } > 6044: PetscSectionSetDof(*section, p, numDofTot[d]); > 6045: } > 6046: } > > In line 6027, number of fields for entire section is defined. Now, > dose the flow in your earlier replies requires me to do that ? I.e, > define numFields to 2. Then > > Inside the loop 6040, i need to check if the point belongs to region 1 or > 2. > > If it belongs to region 1 then numFields is 1 and if it belongs to > region 2, numFields is 2. > > Where do i set the number of fields in the flow you mentioned in the > earlier email ? > The number of fields is always 2 and the chart is always the whole domain. Its just that one field only takes values on part of the chart. The other points will have dof = 0. Matt > Thanks > Reddy > > On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley wrote: > > On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > > wrote: > >> > >> Hello, > >> I am trying to use DMPlexCreateSection from fortran. I was > >> able to solve a Poisson equation earlier using DMPlex for handling > >> mesh data. > >> > >> Now i need to solve a system of equations: (poisson + continuity > >> equations) > >> > >> - div (grad phi) = (C + n) --- (1) > >> div (J ) = 0 --------------- (2) > >> J = n grad(phi) > >> ( C is constant) > >> Simulation domain is defined as, rectangular regions 1 and 2 shown > below. > >> > >> ------------- > >> | 1 | > >> ------------- > >> | | > >> | 2 | > >> | | > >> -------------- > >> > >> Now, equation 1 is defined in region 1 and 2 > >> and equation 2 is defined only for region 2. > >> > >> How do i setup the section ? DMPlexCreateSection applies the given > >> DOF layout per cell to all cells in the mesh. > >> > >> I am not sure if all the function calls inside > >> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible > >> from Fotran. > > > > > > You don't want them anyway since they apply to the whole domain. The > control > > flow could be: > > > > DMPlexSetChart() > > > > DMPlexSetDof() and DMPlexSetFieldDof() > > > > DMPlexSetDof() and DMPlexSetFieldDof() > > > > DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > > DMPlexSetUp() > > > > DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() > > > > We could try and package some of this up if it looks generic. > > > > Thanks, > > > > Matt > > > >> > >> Thanks > >> Reddy > >> > >> -- > >> ----------------------------------------------------- > >> Dharmendar Reddy Palle > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > > > > -- > ----------------------------------------------------- > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Jan 3 12:06:36 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 3 Jan 2014 12:06:36 -0600 Subject: [petsc-users] DMPlexCreateFromCellList and hybrid meshes In-Reply-To: References: <154293533.1860077.1388763814372.JavaMail.root@inria.fr> <87ob3tt5vj.fsf@jedbrown.org> Message-ID: On Fri, Jan 3, 2014 at 10:30 AM, Matthew Knepley wrote: > On Fri, Jan 3, 2014 at 9:57 AM, Jed Brown wrote: > >> Cedric Doucet writes: >> >> > I could use DMPlexCreateFromDAG but there are several drawbacks: >> > 1. DMPlexCreateFromDAG is not well documented; >> > 2. other developers will have to understand a tricky data structure >> > (DAG) to modify my code (see point 1 to understand why it is a >> > problem);; >> >> Every public function is supposed to have a man page. Matt neglected >> this rule in DMPlexCreateFromDAG and it's perfectly valid to complain >> about that. However, I think DMPlexCreateFromDAG provides the >> functionality you need, and is sufficiently general to deal with things >> like boundary faces which are needed for most real simulations. >> >> > 3. DMPlexCreateFromDAG looks like a low-level function in comparison >> > with DMPlexCreateFromCellList which acts at a higher level: if you >> > modify this structure, I or someone else will have to modify my code >> > (see point 2 to understand why it is a problem); >> >> It only uses complicated words; the data structure is basically the same >> as what you're asking for, with the added flexibility of being able to >> represent meshes containing cells with more than one topological >> dimension (e.g., volumes and faces). >> >> > You proposed to modify DMPlexCreateFromCellList function for me and I >> > decided to accept it after thinking about it. Did you change your >> > mind? >> >> I didn't propose that. Maybe Matt did and of course he's welcome to >> generalize the function. >> > > DMPlexCreateFromDAG() is exactly that generalization. What is different > from > CreateFrmCellList()? > I'm sorry, I am sick today. Here is a fuller explanation. A 1-level DAG is exactly the same as the cell-vertex input for CellList() EXCEPT that all numbering is contiguous. I also added a gmsh reader, although it is not fully functional. He could not have chosen a worse format for preallocating, and the boundary handling is insane, so I am delaying writing the full thing. I am so disappointed with the gmsh format, I am not anxious to work with anything they do. Matt > Matt > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dario.isola at newmerical.com Fri Jan 3 12:18:15 2014 From: dario.isola at newmerical.com (Dario Isola) Date: Fri, 03 Jan 2014 13:18:15 -0500 Subject: [petsc-users] Fwd: SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> <87fvp6wgu2.fsf@jedbrown.org> Message-ID: <52C6FEE7.8060005@newmerical.com> Dear, Barry and Jed, Thanks for your replies. We understand your doubts, so let me to put our question into context. In CFD it is standard practice to solve non-linear equations of conservation for steady flows by means of a inexact Newton method. The original Jacobian matrix is modified by adding terms on the diagonal which are proportional to the Courant number and to the lumped mass matrix. This allows us to obtain two things, "relax" the solution update and increase the diagonal dominance of the matrix itself. The latter is key when simple preconditioners are adopted, in our case point Jacobi or SOR. Indeed, if the original matrix was to be used, the GMRES method would converge only on very regular meshes and only when adopting ILU preconditioners with a very high level of fill-in. As result a higher number of non-linear iterations is traded with a simpler linear system to be solved. While exploring the SNES+MF capabilities we found out that we could successfully solve the linear system only with ILU(200) or so. Of course we do not want to touch the function used to evaluate the residual, which determines the final solution. However we think that a suitable modification of the function that Petsc differences to compute the matrix vector product would allow us to obtain a behavior similar to the inexact Newton method. Best regards, Dario On 01/03/2014 12:32 PM, Song Gao wrote: > > > ---------- Forwarded message ---------- > From: *Jed Brown* > > Date: Thu, Jan 2, 2014 at 10:20 AM > Subject: Re: [petsc-users] SNESSetFunction and MatMFFDSetFunction > To: Song Gao >, Barry Smith > > Cc: petsc-users > > > > Song Gao > > writes: > > > Thanks, Barry. > > > > I mean 2) providing a function that I want PETSc to difference to > evaluate > > the matrix vector product. > > > > I want to make a slight modification of the matrix after PETSc > evaluate the > > matrix vector product. > > Performing a matrix-vector product is not supposed to modify the matrix. > It's unlikely that you really want this. > > > On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith > wrote: > > > On Jan 1, 2014, at 11:09 AM, Song Gao > wrote: > > > Dear all, > > > > Happy new year! > > > > I'm using the matrix-free method to solve NS equations. I call > the SNESSetFunction to set the RHS function. I think SNES also > uses that RHS function to evaluate the matrix vector product. > > Yes, PETSc differences this function to evaluate the matrix > vector product. > > > > > But I want to set one function to evaluate the residual, and > another different function to evaluate the matrix vector product. > > Are you providing a function that > > 1) actually evaluates the matrix vector product or are you > > 2) providing a function that you want PETSc to difference to > evaluate the matrix vector product? > > > How can I do that? Does MatMFFDSetFunction do this job? > > For 2) yes, but if the function you provide is different than > the function provided with SNESSetFunction then the matrix-vector > product obtained from differencing it will not be ?correct? > Jacobian for the SNESSetFunction() you are providing so I don?t > see why you would do it. > > For 1) you should use MatCreateShell() and > MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix > to SNESSetJacobian(), then PETSc will use that ?matrix? to do its > matrix-vector products. > > Barry > > > > > > > Any suggestion is appreciated. Thank you. > > > > > > Song > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From john.mousel at gmail.com Fri Jan 3 13:56:34 2014 From: john.mousel at gmail.com (John Mousel) Date: Fri, 3 Jan 2014 13:56:34 -0600 Subject: [petsc-users] PGMRES and IBCGS on Kraken Message-ID: I would like to investigate using pipelined GMRES and IBCGS on Kraken but it seems from the FAQ page that Cray MPT-5.6 is required for the pipelined methods to be effective. Checking the module avail, I see that they only have up to MPT-5.3.6. Is there any benefit at all to these methods if I can't configure with MPT-5.6? John -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Fri Jan 3 16:14:04 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Fri, 03 Jan 2014 16:14:04 -0600 Subject: [petsc-users] PGMRES and IBCGS on Kraken In-Reply-To: References: Message-ID: <87sit4sogj.fsf@jedbrown.org> John Mousel writes: > I would like to investigate using pipelined GMRES and IBCGS on Kraken but > it seems from the FAQ page that Cray MPT-5.6 is required for the pipelined > methods to be effective. Checking the module avail, I see that they only > have up to MPT-5.3.6. Is there any benefit at all to these methods if I > can't configure with MPT-5.6? IBCGS does not use pipelining so MPT version is irrelevant. For pipelined GMRES/CG/CR, you need MPT-5.6 or later to use the asynchronous interface (MPI_Iallreduce). Without that, the pipelined methods will do fewer reductions, but they will be synchronous instead of asynchronous, thus likely not paying off. Unfortunately, even MPT-5.6 does not managed to make significant asynchronous progress. So when you use MPI_Iallreduce, almost nothing happens until you call MPI_Wait. The Cray MPI team says they think this is a software/implementation problem rather than a hardware problem, and they are hopeful that they'll be able to release a new MPT that does a good job of making asynchronous progress. This probably means that PGMRES won't provide large benefits until Cray's MPI team writes some code and you switch to a machine that uses that new code. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From john.mousel at gmail.com Fri Jan 3 16:16:14 2014 From: john.mousel at gmail.com (John Mousel) Date: Fri, 3 Jan 2014 16:16:14 -0600 Subject: [petsc-users] PGMRES and IBCGS on Kraken In-Reply-To: <87sit4sogj.fsf@jedbrown.org> References: <87sit4sogj.fsf@jedbrown.org> Message-ID: Thanks Jed. On Fri, Jan 3, 2014 at 4:14 PM, Jed Brown wrote: > John Mousel writes: > > > I would like to investigate using pipelined GMRES and IBCGS on Kraken > but > > it seems from the FAQ page that Cray MPT-5.6 is required for the > pipelined > > methods to be effective. Checking the module avail, I see that they only > > have up to MPT-5.3.6. Is there any benefit at all to these methods if I > > can't configure with MPT-5.6? > > IBCGS does not use pipelining so MPT version is irrelevant. For > pipelined GMRES/CG/CR, you need MPT-5.6 or later to use the asynchronous > interface (MPI_Iallreduce). Without that, the pipelined methods will do > fewer reductions, but they will be synchronous instead of asynchronous, > thus likely not paying off. > > Unfortunately, even MPT-5.6 does not managed to make significant > asynchronous progress. So when you use MPI_Iallreduce, almost nothing > happens until you call MPI_Wait. The Cray MPI team says they think this > is a software/implementation problem rather than a hardware problem, and > they are hopeful that they'll be able to release a new MPT that does a > good job of making asynchronous progress. > > This probably means that PGMRES won't provide large benefits until > Cray's MPI team writes some code and you switch to a machine that uses > that new code. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Fri Jan 3 17:46:43 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 3 Jan 2014 17:46:43 -0600 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: <52C6FEE7.8060005@newmerical.com> References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> <87fvp6wgu2.fsf@jedbrown.org> <52C6FEE7.8060005@newmerical.com> Message-ID: <4CAC0C20-40D3-408C-A98C-2162AD378ACB@mcs.anl.gov> Dario, Your discussion below (SOR, ILU(200)) seems to imply that you are providing some actual explicit representation of the Jacobian, not just doing something completely matrix free. Is this correct? But the PETSc MatMFFD() is completely matrix free, it provides only a matrix-vector product and no access to the matrix entries, hence I am slightly confused. If you wish to use for the Jacobian something like D + J and do it completely matrix free then rather than than monkeying with ?changing the function? I would use the ?correct" function to compute J x using matrix free multiply and then apply the D to as an additional operation. Hence you would do something like typedef struct { /* data structure to store the usual matrix free matrix and the additional diagonal matrix */ Mat mf; Vec D; Vec work; } MyJContext; MyJContext myJctx; MatCreateSNESMF(SNES,&myJctx.mf); /* create the usual MFFD matrix using the real nonlinear function */ MatMFFDSetFunction(myJctx.mf,yournonlinearfunction,nonlinearfunctionctx); VecCreate(comm,&myJctx.D); /* set the correct sizes for D and fill up with your diagonal matrix entries */ VecDuplicate(&myJctx.D,&myJCtx.work); MatCreateShell(comm,?. &myJ); MatShellSetOperation(myJ,MATOP_MULT, mymultiply); MatShellSetContext(myJ,&myJctx); SNESSetJacobian(snes,myJ,myJ, myJFunction,NULL); where PetscErrorCode mymultply(Mat A,Vec x,Vec y) /* computes y = J x + D x { MyJContext *myJctx; MatShellGetContext(A,&myJctx); MatMult(myJctx->mf,x,y); VecPointwiseMult(myJctx->D,x,myJctx->work); VecAXPY(y,1.myJctx->work); } and PetscErrorCode myJFunction(SNES snes,Vec x,Mat *A,Mat *B,MatStructure *str,void* ctx) /* this is called for each new ?Jacobian? to set the point at which it is computed */ { MyJContext *myJctx; Vec f; MatShellGetContext(*A,&myJctx); SNESGetFunction(snes,&f); MatMFFDSetBase(myJctx->mf,x,f); /* change the D entries if they depend on the current solution etc */ return 0; } Sorry now that I have typed it out it looks a bit more complicated then it really is. It does what you want but without any trickery or confusing code. But, of course, since it is completely matrix free you cannot use SOR with it. Of course by making D suitably large you can make it as well conditioned as you want and thus get rapid linear convergence (though that may slow down or ruin the nonlinear convergence). Hope this helps, Barry On Jan 3, 2014, at 12:18 PM, Dario Isola wrote: > Dear, Barry and Jed, > > Thanks for your replies. > > We understand your doubts, so let me to put our question into context. In CFD it is standard practice to solve non-linear equations of conservation for steady flows by means of a inexact Newton method. The original Jacobian matrix is modified by adding terms on the diagonal which are proportional to the Courant number and to the lumped mass matrix. This allows us to obtain two things, "relax" the solution update and increase the diagonal dominance of the matrix itself. > > The latter is key when simple preconditioners are adopted, in our case point Jacobi or SOR. Indeed, if the original matrix was to be used, the GMRES method would converge only on very regular meshes and only when adopting ILU preconditioners with a very high level of fill-in. As result a higher number of non-linear iterations is traded with a simpler linear system to be solved. > > While exploring the SNES+MF capabilities we found out that we could successfully solve the linear system only with ILU(200) or so. Of course we do not want to touch the function used to evaluate the residual, which determines the final solution. However we think that a suitable modification of the function that Petsc differences to compute the matrix vector product would allow us to obtain a behavior similar to the inexact Newton method. > > Best regards, > Dario > > > On 01/03/2014 12:32 PM, Song Gao wrote: >> >> >> ---------- Forwarded message ---------- >> From: Jed Brown >> Date: Thu, Jan 2, 2014 at 10:20 AM >> Subject: Re: [petsc-users] SNESSetFunction and MatMFFDSetFunction >> To: Song Gao , Barry Smith >> Cc: petsc-users >> >> >> Song Gao writes: >> >> > Thanks, Barry. >> > >> > I mean 2) providing a function that I want PETSc to difference to evaluate >> > the matrix vector product. >> > >> > I want to make a slight modification of the matrix after PETSc evaluate the >> > matrix vector product. >> >> Performing a matrix-vector product is not supposed to modify the matrix. >> It's unlikely that you really want this. >> >> >> On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith wrote: >> >> On Jan 1, 2014, at 11:09 AM, Song Gao wrote: >> >> > Dear all, >> > >> > Happy new year! >> > >> > I'm using the matrix-free method to solve NS equations. I call the SNESSetFunction to set the RHS function. I think SNES also uses that RHS function to evaluate the matrix vector product. >> >> Yes, PETSc differences this function to evaluate the matrix vector product. >> >> > >> > But I want to set one function to evaluate the residual, and another different function to evaluate the matrix vector product. >> >> Are you providing a function that >> >> 1) actually evaluates the matrix vector product or are you >> >> 2) providing a function that you want PETSc to difference to evaluate the matrix vector product? >> >> > How can I do that? Does MatMFFDSetFunction do this job? >> >> For 2) yes, but if the function you provide is different than the function provided with SNESSetFunction then the matrix-vector product obtained from differencing it will not be ?correct? Jacobian for the SNESSetFunction() you are providing so I don?t see why you would do it. >> >> For 1) you should use MatCreateShell() and MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to SNESSetJacobian(), then PETSc will use that ?matrix? to do its matrix-vector products. >> >> Barry >> >> >> >> > >> > Any suggestion is appreciated. Thank you. >> > >> > >> > Song >> > From roguzsel at gmail.com Sat Jan 4 13:32:09 2014 From: roguzsel at gmail.com (=?UTF-8?B?Ui4gT8SfdXogU2Vsdml0b3Bp?=) Date: Sat, 4 Jan 2014 21:32:09 +0200 Subject: [petsc-users] Reductions in various vector and matrix kernels Message-ID: Hello, I am trying to understand the output generated by PETSc with -log_summary option. Using PetscLogStageRegister/PetscLogStagePush/PetscLogStagePop I want to find out if there exists unnecessary communication in my code. My problem is with understanding the number of reductions performed. I have a solver whose stages are logged, and in the summary stages output, I get Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 4: Solver: 6.5625e-04 4.3% 4.2000e+02 59.7% 1.600e+01 23.2% 3.478e+00 14.5% 8.000e+00 5.3% where it seems I have 8 reduction operations performed. But in the details of the stage events, I get: --- Event Stage 4: Solver Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ MatMult 1 1.0 1.2207e-04 1.8 4.10e+01 4.1 8.0e+00 1.5e+01 0.0e+00 1 16 12 7 0 15 27 50 50 0 1 MatMultTranspose 1 1.0 1.2112e-04 1.0 4.60e+01 3.8 8.0e+00 1.5e+01 2.0e+00 1 18 12 7 1 18 30 50 50 25 1 VecDot 3 1.0 2.6989e-04 1.2 2.90e+01 2.6 0.0e+00 0.0e+00 3.0e+00 2 12 0 0 2 36 20 0 0 38 0 VecSet 2 1.0 8.1062e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 VecAXPY 2 1.0 3.7909e-05 1.3 2.00e+01 2.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 5 15 0 0 0 2 VecAYPX 1 1.0 5.0068e-06 1.2 1.00e+01 1.7 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 1 8 0 0 0 6 VecScatterBegin 2 1.0 7.2956e-05 2.4 0.00e+00 0.0 1.6e+01 1.5e+01 0.0e+00 0 0 23 14 0 6 0100100 0 0 VecScatterEnd 2 1.0 9.5129e-05 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 10 0 0 0 0 0 It seems there are only 5 reductions. But when I detail my log stages, it shows up VecAXPY/VecAYPX operations require reductions as well (I have two VecAXPY and a single VecAYPX, so 5+3 = 8). (Whose logs I have not included here). Normally these two operations should not require any reductions at all, as opposed to VecDot. Do VecAXPY/VecAYPX require reductions? Is it because PETSc is compiled with the debugging option so that it performs additional checks that perform reductions? Which is the correct number of reductions in above statistics, 5 or 8? Moreover, why does MatMult require no reduction whereas MatMultTranspose requires two of them? Thanks in advance. -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Sat Jan 4 17:52:03 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sat, 4 Jan 2014 17:52:03 -0600 Subject: [petsc-users] Reductions in various vector and matrix kernels In-Reply-To: References: Message-ID: The debug version does extra reductions for error checking, you should never look at -log_summary with a debug build. Normally MatMult() for MPIAIJ matrices has nearest neighbor communication so neither MatMult() or MatMultTranspose() has global reductions but if some scatters involve all entries then VecScatter does use global reductions in those cases. You could run a slimmed down run on 2 process with one process in the debugger and put a break point in MPI_Allreduce() and MPI_Reduce() to see when it is being triggered inside the MatMultTranspose(). Use -start_in_debugger -debugger_nodes 0 Barry On Jan 4, 2014, at 1:32 PM, R. O?uz Selvitopi wrote: > Hello, > > I am trying to understand the output generated by PETSc with -log_summary option. > > Using PetscLogStageRegister/PetscLogStagePush/PetscLogStagePop I want to find out if there exists unnecessary communication in my code. > My problem is with understanding the number of reductions performed. > > I have a solver whose stages are logged, and in the summary stages output, I get > > Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- > Avg %Total Avg %Total counts %Total Avg %Total counts %Total > 4: Solver: 6.5625e-04 4.3% 4.2000e+02 59.7% 1.600e+01 23.2% 3.478e+00 14.5% 8.000e+00 5.3% > > where it seems I have 8 reduction operations performed. But in the details of the stage events, I get: > > --- Event Stage 4: Solver > > Event Count Time (sec) Flops --- Global --- --- Stage --- Total > Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s > ------------------------------------------------------------------------------------------------------------------------ > MatMult 1 1.0 1.2207e-04 1.8 4.10e+01 4.1 8.0e+00 1.5e+01 0.0e+00 1 16 12 7 0 15 27 50 50 0 1 > MatMultTranspose 1 1.0 1.2112e-04 1.0 4.60e+01 3.8 8.0e+00 1.5e+01 2.0e+00 1 18 12 7 1 18 30 50 50 25 1 > VecDot 3 1.0 2.6989e-04 1.2 2.90e+01 2.6 0.0e+00 0.0e+00 3.0e+00 2 12 0 0 2 36 20 0 0 38 0 > VecSet 2 1.0 8.1062e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 > VecAXPY 2 1.0 3.7909e-05 1.3 2.00e+01 2.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 5 15 0 0 0 2 > VecAYPX 1 1.0 5.0068e-06 1.2 1.00e+01 1.7 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 1 8 0 0 0 6 > VecScatterBegin 2 1.0 7.2956e-05 2.4 0.00e+00 0.0 1.6e+01 1.5e+01 0.0e+00 0 0 23 14 0 6 0100100 0 0 > VecScatterEnd 2 1.0 9.5129e-05 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 10 0 0 0 0 0 > > It seems there are only 5 reductions. > > But when I detail my log stages, it shows up VecAXPY/VecAYPX operations require reductions as well (I have two VecAXPY and a single VecAYPX, so 5+3 = 8). > (Whose logs I have not included here). > > Normally these two operations should not require any reductions at all, as opposed to VecDot. > > Do VecAXPY/VecAYPX require reductions? Is it because PETSc is compiled with the debugging option so that it performs additional checks that perform reductions? > > Which is the correct number of reductions in above statistics, 5 or 8? > > Moreover, why does MatMult require no reduction whereas MatMultTranspose requires two of them? > > Thanks in advance. From roguzsel at gmail.com Sat Jan 4 18:18:57 2014 From: roguzsel at gmail.com (=?UTF-8?B?Ui4gT8SfdXogU2Vsdml0b3Bp?=) Date: Sun, 5 Jan 2014 02:18:57 +0200 Subject: [petsc-users] Reductions in various vector and matrix kernels In-Reply-To: References: Message-ID: And if I want to run my code without debugging mode on, I have to build PETSc from the beginning with the corresponding configure options, right? That is some headache for me, as I am using PETSc on a supercomputer and it is built with the default option, where debug mode is on. On Sun, Jan 5, 2014 at 1:52 AM, Barry Smith wrote: > > The debug version does extra reductions for error checking, you should > never look at -log_summary with a debug build. > > Normally MatMult() for MPIAIJ matrices has nearest neighbor > communication so neither MatMult() or MatMultTranspose() has global > reductions but if some scatters involve all entries then VecScatter does > use global reductions in those cases. You could run a slimmed down run on > 2 process with one process in the debugger and put a break point in > MPI_Allreduce() and MPI_Reduce() to see when it is being triggered inside > the MatMultTranspose(). Use -start_in_debugger -debugger_nodes 0 > > > Barry > > On Jan 4, 2014, at 1:32 PM, R. O?uz Selvitopi wrote: > > > Hello, > > > > I am trying to understand the output generated by PETSc with > -log_summary option. > > > > Using PetscLogStageRegister/PetscLogStagePush/PetscLogStagePop I want to > find out if there exists unnecessary communication in my code. > > My problem is with understanding the number of reductions performed. > > > > I have a solver whose stages are logged, and in the summary stages > output, I get > > > > Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages > --- -- Message Lengths -- -- Reductions -- > > Avg %Total Avg %Total > counts %Total Avg %Total counts %Total > > 4: Solver: 6.5625e-04 4.3% 4.2000e+02 59.7% 1.600e+01 > 23.2% 3.478e+00 14.5% 8.000e+00 5.3% > > > > where it seems I have 8 reduction operations performed. But in the > details of the stage events, I get: > > > > --- Event Stage 4: Solver > > > > Event Count Time (sec) Flops > --- Global --- --- Stage --- Total > > Max Ratio Max Ratio Max Ratio Mess Avg len > Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s > > > ------------------------------------------------------------------------------------------------------------------------ > > MatMult 1 1.0 1.2207e-04 1.8 4.10e+01 4.1 8.0e+00 > 1.5e+01 0.0e+00 1 16 12 7 0 15 27 50 50 0 1 > > MatMultTranspose 1 1.0 1.2112e-04 1.0 4.60e+01 3.8 8.0e+00 1.5e+01 > 2.0e+00 1 18 12 7 1 18 30 50 50 25 1 > > VecDot 3 1.0 2.6989e-04 1.2 2.90e+01 2.6 0.0e+00 > 0.0e+00 3.0e+00 2 12 0 0 2 36 20 0 0 38 0 > > VecSet 2 1.0 8.1062e-06 1.5 0.00e+00 0.0 0.0e+00 > 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 > > VecAXPY 2 1.0 3.7909e-05 1.3 2.00e+01 2.0 0.0e+00 > 0.0e+00 0.0e+00 0 9 0 0 0 5 15 0 0 0 2 > > VecAYPX 1 1.0 5.0068e-06 1.2 1.00e+01 1.7 0.0e+00 > 0.0e+00 0.0e+00 0 5 0 0 0 1 8 0 0 0 6 > > VecScatterBegin 2 1.0 7.2956e-05 2.4 0.00e+00 0.0 1.6e+01 > 1.5e+01 0.0e+00 0 0 23 14 0 6 0100100 0 0 > > VecScatterEnd 2 1.0 9.5129e-05 2.2 0.00e+00 0.0 0.0e+00 > 0.0e+00 0.0e+00 0 0 0 0 0 10 0 0 0 0 0 > > > > It seems there are only 5 reductions. > > > > But when I detail my log stages, it shows up VecAXPY/VecAYPX operations > require reductions as well (I have two VecAXPY and a single VecAYPX, so 5+3 > = 8). > > (Whose logs I have not included here). > > > > Normally these two operations should not require any reductions at all, > as opposed to VecDot. > > > > Do VecAXPY/VecAYPX require reductions? Is it because PETSc is compiled > with the debugging option so that it performs additional checks that > perform reductions? > > > > Which is the correct number of reductions in above statistics, 5 or 8? > > > > Moreover, why does MatMult require no reduction whereas MatMultTranspose > requires two of them? > > > > Thanks in advance. > > -- --------- Oguz. -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Sat Jan 4 18:40:16 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sat, 4 Jan 2014 18:40:16 -0600 Subject: [petsc-users] Reductions in various vector and matrix kernels In-Reply-To: References: Message-ID: You need to build PETSc twice in total. Use two different PETSC_ARCH for example arch-debug and arch-opt then just switch between the PETSC_ARCH depending on what you are doing. If you have any trouble installing PETSc just send the configure.log and make.log to petsc-maint at mcs.anl.gov and we?ll help you get it installed. Barry On Jan 4, 2014, at 6:18 PM, R. O?uz Selvitopi wrote: > And if I want to run my code without debugging mode on, I have to build PETSc from the beginning with the corresponding configure options, right? > > That is some headache for me, as I am using PETSc on a supercomputer and it is built with the default option, where debug mode is on. > > > On Sun, Jan 5, 2014 at 1:52 AM, Barry Smith wrote: > > The debug version does extra reductions for error checking, you should never look at -log_summary with a debug build. > > Normally MatMult() for MPIAIJ matrices has nearest neighbor communication so neither MatMult() or MatMultTranspose() has global reductions but if some scatters involve all entries then VecScatter does use global reductions in those cases. You could run a slimmed down run on 2 process with one process in the debugger and put a break point in MPI_Allreduce() and MPI_Reduce() to see when it is being triggered inside the MatMultTranspose(). Use -start_in_debugger -debugger_nodes 0 > > > Barry > > On Jan 4, 2014, at 1:32 PM, R. O?uz Selvitopi wrote: > > > Hello, > > > > I am trying to understand the output generated by PETSc with -log_summary option. > > > > Using PetscLogStageRegister/PetscLogStagePush/PetscLogStagePop I want to find out if there exists unnecessary communication in my code. > > My problem is with understanding the number of reductions performed. > > > > I have a solver whose stages are logged, and in the summary stages output, I get > > > > Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- > > Avg %Total Avg %Total counts %Total Avg %Total counts %Total > > 4: Solver: 6.5625e-04 4.3% 4.2000e+02 59.7% 1.600e+01 23.2% 3.478e+00 14.5% 8.000e+00 5.3% > > > > where it seems I have 8 reduction operations performed. But in the details of the stage events, I get: > > > > --- Event Stage 4: Solver > > > > Event Count Time (sec) Flops --- Global --- --- Stage --- Total > > Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s > > ------------------------------------------------------------------------------------------------------------------------ > > MatMult 1 1.0 1.2207e-04 1.8 4.10e+01 4.1 8.0e+00 1.5e+01 0.0e+00 1 16 12 7 0 15 27 50 50 0 1 > > MatMultTranspose 1 1.0 1.2112e-04 1.0 4.60e+01 3.8 8.0e+00 1.5e+01 2.0e+00 1 18 12 7 1 18 30 50 50 25 1 > > VecDot 3 1.0 2.6989e-04 1.2 2.90e+01 2.6 0.0e+00 0.0e+00 3.0e+00 2 12 0 0 2 36 20 0 0 38 0 > > VecSet 2 1.0 8.1062e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 > > VecAXPY 2 1.0 3.7909e-05 1.3 2.00e+01 2.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 5 15 0 0 0 2 > > VecAYPX 1 1.0 5.0068e-06 1.2 1.00e+01 1.7 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 1 8 0 0 0 6 > > VecScatterBegin 2 1.0 7.2956e-05 2.4 0.00e+00 0.0 1.6e+01 1.5e+01 0.0e+00 0 0 23 14 0 6 0100100 0 0 > > VecScatterEnd 2 1.0 9.5129e-05 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 10 0 0 0 0 0 > > > > It seems there are only 5 reductions. > > > > But when I detail my log stages, it shows up VecAXPY/VecAYPX operations require reductions as well (I have two VecAXPY and a single VecAYPX, so 5+3 = 8). > > (Whose logs I have not included here). > > > > Normally these two operations should not require any reductions at all, as opposed to VecDot. > > > > Do VecAXPY/VecAYPX require reductions? Is it because PETSc is compiled with the debugging option so that it performs additional checks that perform reductions? > > > > Which is the correct number of reductions in above statistics, 5 or 8? > > > > Moreover, why does MatMult require no reduction whereas MatMultTranspose requires two of them? > > > > Thanks in advance. > > > > > -- > --------- > > Oguz. From sunsesoft010 at 126.com Mon Jan 6 00:49:20 2014 From: sunsesoft010 at 126.com (sunsesoft010 at 126.com) Date: Mon, 06 Jan 2014 06:49:20 +0000 Subject: [petsc-users] =?gb2312?b?xOO7udTaw7/M7LXEyta5pNK7uPa49s341b7V0r/N?= =?gb2312?b?u6fC8KO/?= Message-ID: <089e0111d174c97a7d04ef47a870@google.com> ????????? ?????????????????????? ???????????B2B???????????????????? ??????????????????????????? ???????????????????????????????????? ????? ????????????????????????????? ????????QQ:1747175804 ????020?+?2918-1323? I've invited you to fill out the form ???????????????? ??. 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Lauderdale, FL 33312 US Read the VerticalResponse marketing policy: http://www.verticalresponse.com/content/pm_policy.html -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Mon Jan 6 12:03:42 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Mon, 6 Jan 2014 12:03:42 -0600 Subject: [petsc-users] Reductions in various vector and matrix kernels In-Reply-To: References: Message-ID: You should be able to grab PETSC_ARCH/conf/reconfigure_PETSC_ARCH.py from the current install [on the supercomputer] - modify the required options - and rerun this script to get an equivalent build. Satish On Sat, 4 Jan 2014, Barry Smith wrote: > > You need to build PETSc twice in total. Use two different PETSC_ARCH for example arch-debug and arch-opt then just switch between the PETSC_ARCH depending on what you are doing. > > If you have any trouble installing PETSc just send the configure.log and make.log to petsc-maint at mcs.anl.gov and we?ll help you get it installed. > > Barry > > On Jan 4, 2014, at 6:18 PM, R. O?uz Selvitopi wrote: > > > And if I want to run my code without debugging mode on, I have to build PETSc from the beginning with the corresponding configure options, right? > > > > That is some headache for me, as I am using PETSc on a supercomputer and it is built with the default option, where debug mode is on. > > > > > > On Sun, Jan 5, 2014 at 1:52 AM, Barry Smith wrote: > > > > The debug version does extra reductions for error checking, you should never look at -log_summary with a debug build. > > > > Normally MatMult() for MPIAIJ matrices has nearest neighbor communication so neither MatMult() or MatMultTranspose() has global reductions but if some scatters involve all entries then VecScatter does use global reductions in those cases. You could run a slimmed down run on 2 process with one process in the debugger and put a break point in MPI_Allreduce() and MPI_Reduce() to see when it is being triggered inside the MatMultTranspose(). Use -start_in_debugger -debugger_nodes 0 > > > > > > Barry > > > > On Jan 4, 2014, at 1:32 PM, R. O?uz Selvitopi wrote: > > > > > Hello, > > > > > > I am trying to understand the output generated by PETSc with -log_summary option. > > > > > > Using PetscLogStageRegister/PetscLogStagePush/PetscLogStagePop I want to find out if there exists unnecessary communication in my code. > > > My problem is with understanding the number of reductions performed. > > > > > > I have a solver whose stages are logged, and in the summary stages output, I get > > > > > > Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- > > > Avg %Total Avg %Total counts %Total Avg %Total counts %Total > > > 4: Solver: 6.5625e-04 4.3% 4.2000e+02 59.7% 1.600e+01 23.2% 3.478e+00 14.5% 8.000e+00 5.3% > > > > > > where it seems I have 8 reduction operations performed. But in the details of the stage events, I get: > > > > > > --- Event Stage 4: Solver > > > > > > Event Count Time (sec) Flops --- Global --- --- Stage --- Total > > > Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s > > > ------------------------------------------------------------------------------------------------------------------------ > > > MatMult 1 1.0 1.2207e-04 1.8 4.10e+01 4.1 8.0e+00 1.5e+01 0.0e+00 1 16 12 7 0 15 27 50 50 0 1 > > > MatMultTranspose 1 1.0 1.2112e-04 1.0 4.60e+01 3.8 8.0e+00 1.5e+01 2.0e+00 1 18 12 7 1 18 30 50 50 25 1 > > > VecDot 3 1.0 2.6989e-04 1.2 2.90e+01 2.6 0.0e+00 0.0e+00 3.0e+00 2 12 0 0 2 36 20 0 0 38 0 > > > VecSet 2 1.0 8.1062e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 > > > VecAXPY 2 1.0 3.7909e-05 1.3 2.00e+01 2.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 5 15 0 0 0 2 > > > VecAYPX 1 1.0 5.0068e-06 1.2 1.00e+01 1.7 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 1 8 0 0 0 6 > > > VecScatterBegin 2 1.0 7.2956e-05 2.4 0.00e+00 0.0 1.6e+01 1.5e+01 0.0e+00 0 0 23 14 0 6 0100100 0 0 > > > VecScatterEnd 2 1.0 9.5129e-05 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 10 0 0 0 0 0 > > > > > > It seems there are only 5 reductions. > > > > > > But when I detail my log stages, it shows up VecAXPY/VecAYPX operations require reductions as well (I have two VecAXPY and a single VecAYPX, so 5+3 = 8). > > > (Whose logs I have not included here). > > > > > > Normally these two operations should not require any reductions at all, as opposed to VecDot. > > > > > > Do VecAXPY/VecAYPX require reductions? Is it because PETSc is compiled with the debugging option so that it performs additional checks that perform reductions? > > > > > > Which is the correct number of reductions in above statistics, 5 or 8? > > > > > > Moreover, why does MatMult require no reduction whereas MatMultTranspose requires two of them? > > > > > > Thanks in advance. > > > > > > > > > > -- > > --------- > > > > Oguz. > > From norihiro.w at gmail.com Mon Jan 6 12:06:36 2014 From: norihiro.w at gmail.com (Norihiro Watanabe) Date: Mon, 6 Jan 2014 19:06:36 +0100 Subject: [petsc-users] [KSP] Different behaviour between Message-ID: Hi, I got a strange problem with PETSc 3.4 that linear equations assembled in our FEM codes cannot be solved within 5000 iterations, whereas linear equations loaded from binary files can be solved with only 24 iterations using ksp/examples/tutorials/ex10.c. The binary files were created by the FEM codes using MatView() and VecView() right before calling KSPSolve(). Linear solver types are -ksp_type bcgs -pc_type bjacobi. I set the same tolerance to both programs. As you can see from attached log files, both programs calculate the same "true resid norm" at the beginning but different "preconditioned resid norm". Does it mean both programs are actually solving the same problem but somewhat with different preconditoner? It would be so helpful if you have any clue for this problem. just tell you background of this: Currently I'm facing a convergence problem in linear solvers for solving transient heat transport problems using FEM. At early time steps, PETSc converges quickly (<20 iterations). Later, iteration numbers increase as time steps increase (>5000 after 19 time steps). I'm in the middle of checking where is a problem for the slow convergence. Because I don't get such slow convergence with other linear solvers (BiCGSTAB+Jacobi), I suspect the FEM codes are missing some PETSc functions or options to be used. As I wrote above, if I use ex10.c with the binary files, the convergence problem is solved, which means something going wrong in the FEM codes. Thank you in advance, Nori -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: ex10.log Type: text/x-log Size: 16937 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: fem.log Type: text/x-log Size: 16409 bytes Desc: not available URL: From john.mousel at gmail.com Mon Jan 6 12:23:22 2014 From: john.mousel at gmail.com (John Mousel) Date: Mon, 6 Jan 2014 12:23:22 -0600 Subject: [petsc-users] Setting thread affinities for multiple MPI tasks per node Message-ID: If I want to use threading but launch multiple MPI processes per node is there a way to control the affinities on each socket of the node? I see -threadcomm_affinities, but the documentation is sparse and it's hard for me to see how a single list of core labels gets the job done for multiple MPI processes when the core labels are different on the different sockets. John -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Jan 6 12:36:27 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 6 Jan 2014 12:36:27 -0600 Subject: [petsc-users] [KSP] Different behaviour between In-Reply-To: References: Message-ID: On Mon, Jan 6, 2014 at 12:06 PM, Norihiro Watanabe wrote: > Hi, > > I got a strange problem with PETSc 3.4 that linear equations assembled in > our FEM codes cannot be solved within 5000 iterations, whereas linear > equations loaded from binary files can be solved with only 24 iterations > using ksp/examples/tutorials/ex10.c. The binary files were created by the > FEM codes using MatView() and VecView() right before calling KSPSolve(). > Linear solver types are -ksp_type bcgs -pc_type bjacobi. I set the same > tolerance to both programs. > > As you can see from attached log files, both programs calculate the same > "true resid norm" at the beginning but different "preconditioned resid > norm". Does it mean both programs are actually solving the same problem but > somewhat with different preconditoner? It would be so helpful if you have > any clue for this problem. > Yes, that would be the likely conclusion. It appears that the parallel partition is the same, that the number of nonzeros in both matrices is the same, and that the solvers are identical. Thus I would make sure that the matrices are indeed identical. For example, you can MatLoad the matrix you used in ex10, and MatAXPY() to get the difference. It is a common error to forget to MatZeroEntries() before reassembling the FEM operator which can produce the convergence degredation you see. Thanks, Matt > just tell you background of this: Currently I'm facing a convergence > problem in linear solvers for solving transient heat transport problems > using FEM. At early time steps, PETSc converges quickly (<20 iterations). > Later, iteration numbers increase as time steps increase (>5000 after 19 > time steps). I'm in the middle of checking where is a problem for the slow > convergence. Because I don't get such slow convergence with other linear > solvers (BiCGSTAB+Jacobi), I suspect the FEM codes are missing some PETSc > functions or options to be used. As I wrote above, if I use ex10.c with the > binary files, the convergence problem is solved, which means something > going wrong in the FEM codes. > > > Thank you in advance, > Nori > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Mon Jan 6 12:39:57 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Mon, 06 Jan 2014 12:39:57 -0600 Subject: [petsc-users] Setting thread affinities for multiple MPI tasks per node In-Reply-To: References: Message-ID: <87eh4lj6o2.fsf@jedbrown.org> John Mousel writes: > If I want to use threading but launch multiple MPI processes per node is > there a way to control the affinities on each socket of the node? I see > -threadcomm_affinities, but the documentation is sparse and it's hard for > me to see how a single list of core labels gets the job done for multiple > MPI processes when the core labels are different on the different sockets. For processes, use your mpiexec to set affinity http://blogs.cisco.com/performance/process-affinity-in-ompi-v1-7-part-1/ https://wiki.mpich.org/mpich/index.php/Using_the_Hydra_Process_Manager (-bind-to -help) My intent is to make (threadcomm) thread affinity number within the mask offered by MPI. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From norihiro.w at gmail.com Tue Jan 7 04:39:12 2014 From: norihiro.w at gmail.com (Norihiro Watanabe) Date: Tue, 7 Jan 2014 11:39:12 +0100 Subject: [petsc-users] [KSP] Different behaviour between In-Reply-To: References: Message-ID: Matthew, Thank you for your quick response. I followed your suggestion and confirmed that the matrices are identical (I checked the norm1 of a matrix resulted from MatAXPY()). The next step is to check whether PETSc objects are correctly reset before reassembling equations. A question I have is, do I have to reset or recreate a KSP object? The coefficient matrix, RHS and solution vectors are all set zero by calling MatZeroEntries() and VecSet(). Best, Nori On Mon, Jan 6, 2014 at 7:36 PM, Matthew Knepley wrote: > On Mon, Jan 6, 2014 at 12:06 PM, Norihiro Watanabe wrote: > >> Hi, >> >> I got a strange problem with PETSc 3.4 that linear equations assembled in >> our FEM codes cannot be solved within 5000 iterations, whereas linear >> equations loaded from binary files can be solved with only 24 iterations >> using ksp/examples/tutorials/ex10.c. The binary files were created by the >> FEM codes using MatView() and VecView() right before calling KSPSolve(). >> Linear solver types are -ksp_type bcgs -pc_type bjacobi. I set the same >> tolerance to both programs. >> >> As you can see from attached log files, both programs calculate the same >> "true resid norm" at the beginning but different "preconditioned resid >> norm". Does it mean both programs are actually solving the same problem but >> somewhat with different preconditoner? It would be so helpful if you have >> any clue for this problem. >> > > Yes, that would be the likely conclusion. It appears that the parallel > partition is the same, that the number of nonzeros in both > matrices is the same, and that the solvers are identical. Thus I would > make sure that the matrices are indeed identical. For example, > you can MatLoad the matrix you used in ex10, and MatAXPY() to get the > difference. It is a common error to forget to MatZeroEntries() > before reassembling the FEM operator which can produce the convergence > degredation you see. > > Thanks, > > Matt > > >> just tell you background of this: Currently I'm facing a convergence >> problem in linear solvers for solving transient heat transport problems >> using FEM. At early time steps, PETSc converges quickly (<20 iterations). >> Later, iteration numbers increase as time steps increase (>5000 after 19 >> time steps). I'm in the middle of checking where is a problem for the slow >> convergence. Because I don't get such slow convergence with other linear >> solvers (BiCGSTAB+Jacobi), I suspect the FEM codes are missing some PETSc >> functions or options to be used. As I wrote above, if I use ex10.c with the >> binary files, the convergence problem is solved, which means something >> going wrong in the FEM codes. >> >> >> Thank you in advance, >> Nori >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- Norihiro Watanabe -------------- next part -------------- An HTML attachment was scrubbed... URL: From norihiro.w at gmail.com Tue Jan 7 05:15:40 2014 From: norihiro.w at gmail.com (Norihiro Watanabe) Date: Tue, 7 Jan 2014 12:15:40 +0100 Subject: [petsc-users] [KSP] Different behaviour between In-Reply-To: References: Message-ID: It seems the problem is solved if I call KSPSetOperators() before KSPSolve(). I have one more question. How is a norm of the RHS calculated to check relative tolerance in iterative solvers? Is it norm2 or norm infinity? Best, Nori On Tue, Jan 7, 2014 at 11:39 AM, Norihiro Watanabe wrote: > Matthew, Thank you for your quick response. I followed your suggestion and > confirmed that the matrices are identical (I checked the norm1 of a matrix > resulted from MatAXPY()). > > The next step is to check whether PETSc objects are correctly reset before > reassembling equations. A question I have is, do I have to reset or > recreate a KSP object? The coefficient matrix, RHS and solution vectors are > all set zero by calling MatZeroEntries() and VecSet(). > > > Best, > Nori > > > > On Mon, Jan 6, 2014 at 7:36 PM, Matthew Knepley wrote: > >> On Mon, Jan 6, 2014 at 12:06 PM, Norihiro Watanabe wrote: >> >>> Hi, >>> >>> I got a strange problem with PETSc 3.4 that linear equations assembled >>> in our FEM codes cannot be solved within 5000 iterations, whereas linear >>> equations loaded from binary files can be solved with only 24 iterations >>> using ksp/examples/tutorials/ex10.c. The binary files were created by the >>> FEM codes using MatView() and VecView() right before calling KSPSolve(). >>> Linear solver types are -ksp_type bcgs -pc_type bjacobi. I set the same >>> tolerance to both programs. >>> >>> As you can see from attached log files, both programs calculate the same >>> "true resid norm" at the beginning but different "preconditioned resid >>> norm". Does it mean both programs are actually solving the same problem but >>> somewhat with different preconditoner? It would be so helpful if you have >>> any clue for this problem. >>> >> >> Yes, that would be the likely conclusion. It appears that the parallel >> partition is the same, that the number of nonzeros in both >> matrices is the same, and that the solvers are identical. Thus I would >> make sure that the matrices are indeed identical. For example, >> you can MatLoad the matrix you used in ex10, and MatAXPY() to get the >> difference. It is a common error to forget to MatZeroEntries() >> before reassembling the FEM operator which can produce the convergence >> degredation you see. >> >> Thanks, >> >> Matt >> >> >>> just tell you background of this: Currently I'm facing a convergence >>> problem in linear solvers for solving transient heat transport problems >>> using FEM. At early time steps, PETSc converges quickly (<20 iterations). >>> Later, iteration numbers increase as time steps increase (>5000 after 19 >>> time steps). I'm in the middle of checking where is a problem for the slow >>> convergence. Because I don't get such slow convergence with other linear >>> solvers (BiCGSTAB+Jacobi), I suspect the FEM codes are missing some PETSc >>> functions or options to be used. As I wrote above, if I use ex10.c with the >>> binary files, the convergence problem is solved, which means something >>> going wrong in the FEM codes. >>> >>> >>> Thank you in advance, >>> Nori >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > Norihiro Watanabe > -- Norihiro Watanabe -------------- next part -------------- An HTML attachment was scrubbed... URL: From norihiro.w at gmail.com Tue Jan 7 06:16:03 2014 From: norihiro.w at gmail.com (Norihiro Watanabe) Date: Tue, 7 Jan 2014 13:16:03 +0100 Subject: [petsc-users] [KSP] Different behaviour between In-Reply-To: References: Message-ID: solved. thank you On Tue, Jan 7, 2014 at 12:15 PM, Norihiro Watanabe wrote: > It seems the problem is solved if I call KSPSetOperators() before > KSPSolve(). > > I have one more question. How is a norm of the RHS calculated to check > relative tolerance in iterative solvers? Is it norm2 or norm infinity? > > Best, > Nori > > > > On Tue, Jan 7, 2014 at 11:39 AM, Norihiro Watanabe wrote: > >> Matthew, Thank you for your quick response. I followed your suggestion >> and confirmed that the matrices are identical (I checked the norm1 of a >> matrix resulted from MatAXPY()). >> >> The next step is to check whether PETSc objects are correctly reset >> before reassembling equations. A question I have is, do I have to reset or >> recreate a KSP object? The coefficient matrix, RHS and solution vectors are >> all set zero by calling MatZeroEntries() and VecSet(). >> >> >> Best, >> Nori >> >> >> >> On Mon, Jan 6, 2014 at 7:36 PM, Matthew Knepley wrote: >> >>> On Mon, Jan 6, 2014 at 12:06 PM, Norihiro Watanabe >> > wrote: >>> >>>> Hi, >>>> >>>> I got a strange problem with PETSc 3.4 that linear equations assembled >>>> in our FEM codes cannot be solved within 5000 iterations, whereas linear >>>> equations loaded from binary files can be solved with only 24 iterations >>>> using ksp/examples/tutorials/ex10.c. The binary files were created by the >>>> FEM codes using MatView() and VecView() right before calling KSPSolve(). >>>> Linear solver types are -ksp_type bcgs -pc_type bjacobi. I set the same >>>> tolerance to both programs. >>>> >>>> As you can see from attached log files, both programs calculate the >>>> same "true resid norm" at the beginning but different "preconditioned resid >>>> norm". Does it mean both programs are actually solving the same problem but >>>> somewhat with different preconditoner? It would be so helpful if you have >>>> any clue for this problem. >>>> >>> >>> Yes, that would be the likely conclusion. It appears that the parallel >>> partition is the same, that the number of nonzeros in both >>> matrices is the same, and that the solvers are identical. Thus I would >>> make sure that the matrices are indeed identical. For example, >>> you can MatLoad the matrix you used in ex10, and MatAXPY() to get the >>> difference. It is a common error to forget to MatZeroEntries() >>> before reassembling the FEM operator which can produce the convergence >>> degredation you see. >>> >>> Thanks, >>> >>> Matt >>> >>> >>>> just tell you background of this: Currently I'm facing a convergence >>>> problem in linear solvers for solving transient heat transport problems >>>> using FEM. At early time steps, PETSc converges quickly (<20 iterations). >>>> Later, iteration numbers increase as time steps increase (>5000 after 19 >>>> time steps). I'm in the middle of checking where is a problem for the slow >>>> convergence. Because I don't get such slow convergence with other linear >>>> solvers (BiCGSTAB+Jacobi), I suspect the FEM codes are missing some PETSc >>>> functions or options to be used. As I wrote above, if I use ex10.c with the >>>> binary files, the convergence problem is solved, which means something >>>> going wrong in the FEM codes. >>>> >>>> >>>> Thank you in advance, >>>> Nori >>>> >>>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> Norihiro Watanabe >> > > > > -- > Norihiro Watanabe > -- Norihiro Watanabe -------------- next part -------------- An HTML attachment was scrubbed... URL: From mary.sweat78 at yahoo.it Tue Jan 7 10:28:09 2014 From: mary.sweat78 at yahoo.it (mary sweat) Date: Tue, 7 Jan 2014 16:28:09 +0000 (GMT) Subject: [petsc-users] KSP: domain decomposition and distribution Message-ID: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> Hi all,? I need to know how does KSP separate and distribute domain between processes and the way processes share and communicate halfway results. Is there any good documentation about it??? Thanks a million in advance -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Tue Jan 7 10:34:31 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Tue, 07 Jan 2014 10:34:31 -0600 Subject: [petsc-users] KSP: domain decomposition and distribution In-Reply-To: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> References: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> Message-ID: <8738kzg38o.fsf@jedbrown.org> mary sweat writes: > Hi all,? I need to know how does KSP separate and distribute domain > between processes and the way processes share and communicate halfway > results. Is there any good documentation about it??? The communication is in Mat and Vec functions. You can see it summarized in -log_summary. For the underlying theory, see Barry's book. http://www.mcs.anl.gov/~bsmith/ddbook.html -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From roguzsel at gmail.com Tue Jan 7 14:57:23 2014 From: roguzsel at gmail.com (=?UTF-8?B?Ui4gT8SfdXogU2Vsdml0b3Bp?=) Date: Tue, 7 Jan 2014 22:57:23 +0200 Subject: [petsc-users] Reductions in various vector and matrix kernels In-Reply-To: References: Message-ID: It is a great convenience to have one line of bash script to change to debug or optimized build using PETSC_ARCH. I have done this at my computer and everything is fine. It seems PETSc performs additional checks that require extra communication in VecAXPY/VecAYPX as well as in MatMultTranspose when built with debug option. It does not perform any communication in the kernels I have mentioned in the optimized build. On Mon, Jan 6, 2014 at 8:03 PM, Satish Balay wrote: > You should be able to grab PETSC_ARCH/conf/reconfigure_PETSC_ARCH.py > from the current install [on the supercomputer] - modify the required > options - and rerun this script to get an equivalent build. > > Satish > > On Sat, 4 Jan 2014, Barry Smith wrote: > > > > > You need to build PETSc twice in total. Use two different PETSC_ARCH > for example arch-debug and arch-opt then just switch between the > PETSC_ARCH depending on what you are doing. > > > > If you have any trouble installing PETSc just send the configure.log > and make.log to petsc-maint at mcs.anl.gov and we?ll help you get it > installed. > > > > Barry > > > > On Jan 4, 2014, at 6:18 PM, R. O?uz Selvitopi > wrote: > > > > > And if I want to run my code without debugging mode on, I have to > build PETSc from the beginning with the corresponding configure options, > right? > > > > > > That is some headache for me, as I am using PETSc on a supercomputer > and it is built with the default option, where debug mode is on. > > > > > > > > > On Sun, Jan 5, 2014 at 1:52 AM, Barry Smith > wrote: > > > > > > The debug version does extra reductions for error checking, you > should never look at -log_summary with a debug build. > > > > > > Normally MatMult() for MPIAIJ matrices has nearest neighbor > communication so neither MatMult() or MatMultTranspose() has global > reductions but if some scatters involve all entries then VecScatter does > use global reductions in those cases. You could run a slimmed down run on > 2 process with one process in the debugger and put a break point in > MPI_Allreduce() and MPI_Reduce() to see when it is being triggered inside > the MatMultTranspose(). Use -start_in_debugger -debugger_nodes 0 > > > > > > > > > Barry > > > > > > On Jan 4, 2014, at 1:32 PM, R. O?uz Selvitopi > wrote: > > > > > > > Hello, > > > > > > > > I am trying to understand the output generated by PETSc with > -log_summary option. > > > > > > > > Using PetscLogStageRegister/PetscLogStagePush/PetscLogStagePop I > want to find out if there exists unnecessary communication in my code. > > > > My problem is with understanding the number of reductions performed. > > > > > > > > I have a solver whose stages are logged, and in the summary stages > output, I get > > > > > > > > Summary of Stages: ----- Time ------ ----- Flops ----- --- > Messages --- -- Message Lengths -- -- Reductions -- > > > > Avg %Total Avg %Total > counts %Total Avg %Total counts %Total > > > > 4: Solver: 6.5625e-04 4.3% 4.2000e+02 59.7% 1.600e+01 > 23.2% 3.478e+00 14.5% 8.000e+00 5.3% > > > > > > > > where it seems I have 8 reduction operations performed. But in the > details of the stage events, I get: > > > > > > > > --- Event Stage 4: Solver > > > > > > > > Event Count Time (sec) Flops > --- Global --- --- Stage --- Total > > > > Max Ratio Max Ratio Max Ratio Mess Avg > len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s > > > > > ------------------------------------------------------------------------------------------------------------------------ > > > > MatMult 1 1.0 1.2207e-04 1.8 4.10e+01 4.1 > 8.0e+00 1.5e+01 0.0e+00 1 16 12 7 0 15 27 50 50 0 1 > > > > MatMultTranspose 1 1.0 1.2112e-04 1.0 4.60e+01 3.8 8.0e+00 > 1.5e+01 2.0e+00 1 18 12 7 1 18 30 50 50 25 1 > > > > VecDot 3 1.0 2.6989e-04 1.2 2.90e+01 2.6 > 0.0e+00 0.0e+00 3.0e+00 2 12 0 0 2 36 20 0 0 38 0 > > > > VecSet 2 1.0 8.1062e-06 1.5 0.00e+00 0.0 > 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 > > > > VecAXPY 2 1.0 3.7909e-05 1.3 2.00e+01 2.0 0.0e+00 > 0.0e+00 0.0e+00 0 9 0 0 0 5 15 0 0 0 2 > > > > VecAYPX 1 1.0 5.0068e-06 1.2 1.00e+01 1.7 0.0e+00 > 0.0e+00 0.0e+00 0 5 0 0 0 1 8 0 0 0 6 > > > > VecScatterBegin 2 1.0 7.2956e-05 2.4 0.00e+00 0.0 1.6e+01 > 1.5e+01 0.0e+00 0 0 23 14 0 6 0100100 0 0 > > > > VecScatterEnd 2 1.0 9.5129e-05 2.2 0.00e+00 0.0 0.0e+00 > 0.0e+00 0.0e+00 0 0 0 0 0 10 0 0 0 0 0 > > > > > > > > It seems there are only 5 reductions. > > > > > > > > But when I detail my log stages, it shows up VecAXPY/VecAYPX > operations require reductions as well (I have two VecAXPY and a single > VecAYPX, so 5+3 = 8). > > > > (Whose logs I have not included here). > > > > > > > > Normally these two operations should not require any reductions at > all, as opposed to VecDot. > > > > > > > > Do VecAXPY/VecAYPX require reductions? Is it because PETSc is > compiled with the debugging option so that it performs additional checks > that perform reductions? > > > > > > > > Which is the correct number of reductions in above statistics, 5 or > 8? > > > > > > > > Moreover, why does MatMult require no reduction whereas > MatMultTranspose requires two of them? > > > > > > > > Thanks in advance. > > > > > > > > > > > > > > > -- > > > --------- > > > > > > Oguz. > > > > > -- --------- Oguz. -------------- next part -------------- An HTML attachment was scrubbed... URL: From danyang.su at gmail.com Tue Jan 7 16:09:28 2014 From: danyang.su at gmail.com (Danyang Su) Date: Tue, 07 Jan 2014 14:09:28 -0800 Subject: [petsc-users] Convergence problem in newton iteration Message-ID: <52CC7B18.1030506@gmail.com> Hi All, I have implemented the KSP solver to a CFD problem and it works well for most of the scenarios. But for some scenarios, it will give out solution 0. The matrix structure, rhs and solution from PETSc and another sequential solver can be found in the attached files. Please note that the first value is the number of data in the file. For linear equations 1 to 48, it works well and the solutions are the same as the other solver. For equation 49, PETSc give out zero solution and the iteration number is 0, but the other solver give out acceptable solution. The KSPConvergencedReason is 3 for all these equations. All suggestions and comments are appreciated. Regards, Danyang -------------- next part -------------- 1010 7.692317852028667E-014 1.910425722511429E-014 0.000000000000000E+000 2.151196235372827E-015 -1.339343939320253E-016 -3.993764454413820E-014 -5.008334547052743E-014 5.268984928573743E-020 9.890002749557718E-016 2.373411932482875E-013 1.538573278113062E-013 3.821541946281461E-014 8.748791553952855E-019 4.303876048952771E-015 -2.678687962039133E-016 -7.987337611730459E-014 -1.001645039019851E-013 1.053796948590954E-019 1.978111847062963E-015 4.746974971011328E-013 1.538353828817087E-013 3.820160943764257E-014 -8.748791553952855E-019 4.300908045505591E-015 -2.678687962039133E-016 -7.987720216512734E-014 -1.001688779801247E-013 1.053797022806988E-019 1.977889209746733E-015 4.746672817418383E-013 1.538463553465074E-013 3.820851445022859E-014 0.000000000000000E+000 4.302392047229181E-015 -2.678687962039133E-016 -7.987528914121596E-014 -1.001666909410549E-013 1.053796985698971E-019 1.978000528404848E-015 4.746823894214856E-013 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-1.184651628836199E-005 From knepley at gmail.com Tue Jan 7 18:07:50 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 7 Jan 2014 18:07:50 -0600 Subject: [petsc-users] Convergence problem in newton iteration In-Reply-To: <52CC7B18.1030506@gmail.com> References: <52CC7B18.1030506@gmail.com> Message-ID: On Tue, Jan 7, 2014 at 4:09 PM, Danyang Su wrote: > Hi All, > > I have implemented the KSP solver to a CFD problem and it works well for > most of the scenarios. But for some scenarios, it will give out solution 0. > > The matrix structure, rhs and solution from PETSc and another sequential > solver can be found in the attached files. Please note that the first value > is the number of data in the file. > > For linear equations 1 to 48, it works well and the solutions are the same > as the other solver. For equation 49, PETSc give out zero solution and the > iteration number is 0, but the other solver give out acceptable solution. > The KSPConvergencedReason is 3 for all these equations. > This means that the solver converged because it went below the absolute tolerance. You could have a poorly scaled system. Matt > All suggestions and comments are appreciated. > > Regards, > > Danyang > > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Tue Jan 7 19:32:31 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Tue, 07 Jan 2014 18:32:31 -0700 Subject: [petsc-users] Reductions in various vector and matrix kernels In-Reply-To: References: Message-ID: <87ha9fjm1c.fsf@jedbrown.org> "R. O?uz Selvitopi" writes: > It seems PETSc performs additional checks that require extra communication > in VecAXPY/VecAYPX as well as in MatMultTranspose when built with debug > option. That's why it's called "debug". The checks are to make sure that logically collective information is indeed collective. The man pages state "logically collective" and debug builds verify most things. > It does not perform any communication in the kernels I have mentioned in > the optimized build. Correct. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From mary.sweat78 at yahoo.it Wed Jan 8 05:26:21 2014 From: mary.sweat78 at yahoo.it (mary sweat) Date: Wed, 8 Jan 2014 11:26:21 +0000 (GMT) Subject: [petsc-users] KSP: domain decomposition and distribution In-Reply-To: <8738kzg38o.fsf@jedbrown.org> References: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> <8738kzg38o.fsf@jedbrown.org> Message-ID: <1389180381.38473.YahooMailNeo@web171403.mail.ir2.yahoo.com> My target is the following. I got a huge linear system with a sparse huge matrix, nothing to deal with PDE. How is the system splitted between processes? is there in this suggested book the answer? Thanks again Il Marted? 7 Gennaio 2014 17:34, Jed Brown ha scritto: mary sweat writes: > Hi all,? I need to know how does KSP separate and distribute domain > between processes and the way processes share and communicate halfway > results. Is there any good documentation about it??? The communication is in Mat and Vec functions.? You can see it summarized in -log_summary.? For the underlying theory, see Barry's book. http://www.mcs.anl.gov/~bsmith/ddbook.html -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Wed Jan 8 05:34:29 2014 From: dave.mayhem23 at gmail.com (Dave May) Date: Wed, 8 Jan 2014 12:34:29 +0100 Subject: [petsc-users] KSP: domain decomposition and distribution In-Reply-To: <1389180381.38473.YahooMailNeo@web171403.mail.ir2.yahoo.com> References: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> <8738kzg38o.fsf@jedbrown.org> <1389180381.38473.YahooMailNeo@web171403.mail.ir2.yahoo.com> Message-ID: Please check out the manual page for MatSetSizes() http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatSetSizes.html Basically you have two choices: 1/ Define the global size of the matrix and use PETSC_DECIDE for the local sizes. In this case, PETSc will define the local row size in a manner such that there are approximately the same number of rows on each process. 2/ Define the local sizes yourself and use PETSC_DETERMINE for the global size. Then you have full control over the parallel layout. The following functions described by these pages http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetSize.html http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetLocalSize.html http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRanges.html http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRangesColumn.html might also be useful for you in double checking what the matrix decomposition looks like Cheers, Dave On 8 January 2014 12:26, mary sweat wrote: > My target is the following. I got a huge linear system with a sparse huge > matrix, nothing to deal with PDE. How is the system splitted between > processes? is there in this suggested book the answer? > Thanks again > > > Il Marted? 7 Gennaio 2014 17:34, Jed Brown ha > scritto: > mary sweat writes: > > > > Hi all, I need to know how does KSP separate and distribute domain > > between processes and the way processes share and communicate halfway > > results. Is there any good documentation about it??? > > > The communication is in Mat and Vec functions. You can see it > summarized in -log_summary. For the underlying theory, see Barry's > book. > > http://www.mcs.anl.gov/~bsmith/ddbook.html > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mary.sweat78 at yahoo.it Wed Jan 8 06:37:55 2014 From: mary.sweat78 at yahoo.it (mary sweat) Date: Wed, 8 Jan 2014 12:37:55 +0000 (GMT) Subject: [petsc-users] KSP: domain decomposition and distribution In-Reply-To: References: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> <8738kzg38o.fsf@jedbrown.org> <1389180381.38473.YahooMailNeo@web171403.mail.ir2.yahoo.com> Message-ID: <1389184675.79773.YahooMailNeo@web171401.mail.ir2.yahoo.com> I do not explicitily check the size, because I use?PETSC_DECIDE, instead I specify the number of processes. What I really care about is hw does KSPSolve solve the system in a parallel way with multiple processes. Il Mercoled? 8 Gennaio 2014 12:34, Dave May ha scritto: Please check out the manual page for MatSetSizes() ? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatSetSizes.html Basically you have two choices: 1/ Define the global size of the matrix and use PETSC_DECIDE for the local sizes. In this case, PETSc will define the local row size in a manner such that there are approximately the same number of rows on each process. 2/ Define the local sizes yourself and use PETSC_DETERMINE for the global size. Then you have full control over the parallel layout. The following functions described by these pages ? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetSize.html ? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetLocalSize.html ? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRanges.html ? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRangesColumn.html might also be useful for you in double checking what the matrix decomposition looks like Cheers, ? Dave On 8 January 2014 12:26, mary sweat wrote: My target is the following. I got a huge linear system with a sparse huge matrix, nothing to deal with PDE. How is the system splitted between processes? is there in this suggested book the answer? >Thanks again > > > >Il Marted? 7 Gennaio 2014 17:34, Jed Brown ha scritto: > >mary sweat writes: > > >> Hi all,? I need to know how does KSP separate and distribute domain >> between processes and the way processes share and communicate halfway >> results. Is there any good documentation about it??? > >The communication is in Mat and Vec functions.? You can see it >summarized in -log_summary.? For the underlying theory, see Barry's >book. > >http://www.mcs.anl.gov/~bsmith/ddbook.html > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Wed Jan 8 06:46:25 2014 From: dave.mayhem23 at gmail.com (Dave May) Date: Wed, 8 Jan 2014 13:46:25 +0100 Subject: [petsc-users] KSP: domain decomposition and distribution In-Reply-To: <1389184675.79773.YahooMailNeo@web171401.mail.ir2.yahoo.com> References: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> <8738kzg38o.fsf@jedbrown.org> <1389180381.38473.YahooMailNeo@web171403.mail.ir2.yahoo.com> <1389184675.79773.YahooMailNeo@web171401.mail.ir2.yahoo.com> Message-ID: You asked how the problem was split between processes. In your case, this is defined by the matrix. The default solver in petsc is gmres preconditioned with block Jacobi and ilu(0) applied on each block. The "block" I refer to is the piece of the matrix locally owned by each processor (which is thus defined by the matrix layout/partitioning) On Wednesday, 8 January 2014, mary sweat wrote: > I do not explicitily check the size, because I use PETSC_DECIDE, instead > I specify the number of processes. What I really care about is hw does > KSPSolve solve the system in a parallel way with multiple processes. > > > Il Mercoled? 8 Gennaio 2014 12:34, Dave May > > ha scritto: > Please check out the manual page for MatSetSizes() > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatSetSizes.html > > Basically you have two choices: > > 1/ Define the global size of the matrix and use PETSC_DECIDE for the local > sizes. > In this case, PETSc will define the local row size in a manner such that > there are approximately the same number of rows on each process. > > 2/ Define the local sizes yourself and use PETSC_DETERMINE for the global > size. > Then you have full control over the parallel layout. > > The following functions described by these pages > > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetSize.html > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetLocalSize.html > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRanges.html > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRangesColumn.html > > might also be useful for you in double checking what the matrix > decomposition looks like > > > Cheers, > Dave > > > > On 8 January 2014 12:26, mary sweat > > wrote: > > My target is the following. I got a huge linear system with a sparse huge > matrix, nothing to deal with PDE. How is the system splitted between > processes? is there in this suggested book the answer? > Thanks again > > > Il Marted? 7 Gennaio 2014 17:34, Jed Brown > > ha scritto: > mary sweat 'mary.sweat78 at yahoo.it');>> writes: > > > > Hi all, I need to know how does KSP separate and distribute domain > > between processes and the way processes share and communicate halfway > > results. Is there any good documentation about it??? > > > The communication is in Mat and Vec functions. You can see it > summarized in -log_summary. For the underlying theory, see Barry's > book. > > http://www.mcs.anl.gov/~bsmith/ddbook.html > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From song.gao2 at mail.mcgill.ca Wed Jan 8 10:47:16 2014 From: song.gao2 at mail.mcgill.ca (Song Gao) Date: Wed, 8 Jan 2014 11:47:16 -0500 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: <4CAC0C20-40D3-408C-A98C-2162AD378ACB@mcs.anl.gov> References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> <87fvp6wgu2.fsf@jedbrown.org> <52C6FEE7.8060005@newmerical.com> <4CAC0C20-40D3-408C-A98C-2162AD378ACB@mcs.anl.gov> Message-ID: Dear Barry, Thanks for reply. I basically implemented your codes. Then I have two questions. The first is I'm working on Fortran. So I can't use MatShellSetContext to set the structure. Therefore I let the variable I want to set, MyJctx, to be global. Is there other way to do that? The second question is I did some tests. let the D vec to be zero, I expect the code which I explicit set the matrix-free jacobian and the code which I use runtime option -snes_mf give the same residual history. But it doesn't. Here is the histories for -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type none -snes_view -snes_linesearch_type basic 0 SNES Function norm 4.272952196300e-02 0 KSP Residual norm 4.272952196300e-02 1 KSP Residual norm 4.234712668718e-02 2 KSP Residual norm 3.683301946690e-02 3 KSP Residual norm 3.465586805169e-02 4 KSP Residual norm 3.452667066800e-02 5 KSP Residual norm 3.451739518719e-02 Linear solve did not converge due to DIVERGED_ITS iterations 5 1 SNES Function norm 4.203973403992e-02 0 KSP Residual norm 4.203973403992e-02 1 KSP Residual norm 4.203070641961e-02 2 KSP Residual norm 4.202387940443e-02 3 KSP Residual norm 4.183739347023e-02 4 KSP Residual norm 4.183629424897e-02 5 KSP Residual norm 4.159456024825e-02 Linear solve did not converge due to DIVERGED_ITS iterations 5 2 SNES Function norm 4.200901009970e-02 Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 Here is the histories for -snes_mf -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type none -snes_view -snes_linesearch_type basic 0 SNES Function norm 4.272952196300e-02 0 KSP Residual norm 4.272952196300e-02 1 KSP Residual norm 4.270267664569e-02 2 KSP Residual norm 3.690026921954e-02 3 KSP Residual norm 3.681740616743e-02 4 KSP Residual norm 3.464377294985e-02 5 KSP Residual norm 3.464376048536e-02 Linear solve did not converge due to DIVERGED_ITS iterations 5 1 SNES Function norm 3.461633424373e-02 0 KSP Residual norm 3.461633424373e-02 1 KSP Residual norm 3.461632119472e-02 2 KSP Residual norm 3.406130197963e-02 3 KSP Residual norm 3.406122155751e-02 4 KSP Residual norm 3.403393397001e-02 5 KSP Residual norm 3.403367748538e-02 Linear solve did not converge due to DIVERGED_ITS iterations 5 2 SNES Function norm 3.403367847002e-02 Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 We can see that at 0 SNES 1 KSP step, the residual norms are different. Did I do something wrong here? The codes are like type MyJContext Mat mf Vec D Vec work end type MyJContext c type(MyJContext) myJctx -------------------------------------------------------------------------- call SNESCreate(PETSC_COMM_WORLD, snes, ierpetsc) call SNESSetFunction(snes, pet_rhs_snes, flowsolrhs, ctx, @ ierpetsc) c call MatCreateSNESMF(snes, myJctx%mf, ierpetsc) call MatMFFDSetFunction(myJctx%mf, flowsolrhs, ctx, ierpetsc) call VecDuplicate(pet_solu_snes, myJctx%D, ierpetsc) call VecDuplicate(pet_solu_snes, myJctx%work, ierpetsc) call VecSet(myJctx%D, 0.0D-3, ierpetsc) call MatCreateShell(PETSC_COMM_WORLD, pet_nfff, pet_nfff, @ PETSC_DETERMINE, PETSC_DETERMINE, ctx, myJ, ierpetsc) call MatShellSetOperation(myJ, MATOP_MULT, mymultply, @ ierpetsc) call SNESSetJacobian(snes, myJ, pet_mat_pre, @ flowsoljac, ctx, ierpetsc) -------------------------------------------------------------------------- subroutine mymultply ( A, x, y, ierpet) Mat :: A Vec :: x, y PetscErrorCode :: ierpet c call MatMult(myJctx%mf,x,y, ierpet) c end -------------------------------------------------------------------------- subroutine flowsoljac ( snes, pet_solu_snes, pet_mat_snes, @ pet_mat_pre, flag, ctxx, ierrpet ) c explicitly assemble pet_mat_pre matrix here c ......... c ......... call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, @ ierrpet) end On Fri, Jan 3, 2014 at 6:46 PM, Barry Smith wrote: > > Dario, > > Your discussion below (SOR, ILU(200)) seems to imply that you are > providing some actual explicit representation of the Jacobian, not just > doing something completely matrix free. Is this correct? But the PETSc > MatMFFD() is completely matrix free, it provides only a matrix-vector > product and no access to the matrix entries, hence I am slightly confused. > > If you wish to use for the Jacobian something like D + J and do it > completely matrix free then rather than than monkeying with ?changing the > function? I would > use the ?correct" function to compute J x using matrix free multiply and > then apply the D to as an additional operation. Hence you would do > something like > > typedef struct { /* data structure to store the usual matrix free > matrix and the additional diagonal matrix */ > Mat mf; > Vec D; > Vec work; > } MyJContext; > > MyJContext myJctx; > > MatCreateSNESMF(SNES,&myJctx.mf); /* create the usual MFFD matrix > using the real nonlinear function */ > > MatMFFDSetFunction(myJctx.mf,yournonlinearfunction,nonlinearfunctionctx); > VecCreate(comm,&myJctx.D); > /* set the correct sizes for D and fill up with your diagonal > matrix entries */ > VecDuplicate(&myJctx.D,&myJCtx.work); > MatCreateShell(comm,?. &myJ); > MatShellSetOperation(myJ,MATOP_MULT, mymultiply); > MatShellSetContext(myJ,&myJctx); > SNESSetJacobian(snes,myJ,myJ, myJFunction,NULL); > > where > > PetscErrorCode mymultply(Mat A,Vec x,Vec y) /* computes y = J x + > D x > { > MyJContext *myJctx; > > MatShellGetContext(A,&myJctx); > MatMult(myJctx->mf,x,y); > VecPointwiseMult(myJctx->D,x,myJctx->work); > VecAXPY(y,1.myJctx->work); > } > > and > > PetscErrorCode myJFunction(SNES snes,Vec x,Mat *A,Mat > *B,MatStructure *str,void* ctx) > > /* this is called for each new ?Jacobian? to set the point at which > it is computed */ > { > MyJContext *myJctx; > Vec f; > MatShellGetContext(*A,&myJctx); > SNESGetFunction(snes,&f); > MatMFFDSetBase(myJctx->mf,x,f); > > /* change the D entries if they depend on the current solution > etc */ > return 0; > } > > Sorry now that I have typed it out it looks a bit more complicated > then it really is. It does what you want but without any trickery or > confusing code. > > But, of course, since it is completely matrix free you cannot use > SOR with it. Of course by making D suitably large you can make it as well > conditioned as you want and thus get rapid linear convergence (though that > may slow down or ruin the nonlinear convergence). > > Hope this helps, > > Barry > > > > > > On Jan 3, 2014, at 12:18 PM, Dario Isola > wrote: > > > Dear, Barry and Jed, > > > > Thanks for your replies. > > > > We understand your doubts, so let me to put our question into context. > In CFD it is standard practice to solve non-linear equations of > conservation for steady flows by means of a inexact Newton method. The > original Jacobian matrix is modified by adding terms on the diagonal which > are proportional to the Courant number and to the lumped mass matrix. This > allows us to obtain two things, "relax" the solution update and increase > the diagonal dominance of the matrix itself. > > > > The latter is key when simple preconditioners are adopted, in our case > point Jacobi or SOR. Indeed, if the original matrix was to be used, the > GMRES method would converge only on very regular meshes and only when > adopting ILU preconditioners with a very high level of fill-in. As result a > higher number of non-linear iterations is traded with a simpler linear > system to be solved. > > > > While exploring the SNES+MF capabilities we found out that we could > successfully solve the linear system only with ILU(200) or so. Of course we > do not want to touch the function used to evaluate the residual, which > determines the final solution. However we think that a suitable > modification of the function that Petsc differences to compute the matrix > vector product would allow us to obtain a behavior similar to the inexact > Newton method. > > > > Best regards, > > Dario > > > > > > On 01/03/2014 12:32 PM, Song Gao wrote: > >> > >> > >> ---------- Forwarded message ---------- > >> From: Jed Brown > >> Date: Thu, Jan 2, 2014 at 10:20 AM > >> Subject: Re: [petsc-users] SNESSetFunction and MatMFFDSetFunction > >> To: Song Gao , Barry Smith < > bsmith at mcs.anl.gov> > >> Cc: petsc-users > >> > >> > >> Song Gao writes: > >> > >> > Thanks, Barry. > >> > > >> > I mean 2) providing a function that I want PETSc to difference to > evaluate > >> > the matrix vector product. > >> > > >> > I want to make a slight modification of the matrix after PETSc > evaluate the > >> > matrix vector product. > >> > >> Performing a matrix-vector product is not supposed to modify the matrix. > >> It's unlikely that you really want this. > >> > >> > >> On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith wrote: > >> > >> On Jan 1, 2014, at 11:09 AM, Song Gao wrote: > >> > >> > Dear all, > >> > > >> > Happy new year! > >> > > >> > I'm using the matrix-free method to solve NS equations. I call the > SNESSetFunction to set the RHS function. I think SNES also uses that RHS > function to evaluate the matrix vector product. > >> > >> Yes, PETSc differences this function to evaluate the matrix vector > product. > >> > >> > > >> > But I want to set one function to evaluate the residual, and another > different function to evaluate the matrix vector product. > >> > >> Are you providing a function that > >> > >> 1) actually evaluates the matrix vector product or are you > >> > >> 2) providing a function that you want PETSc to difference to > evaluate the matrix vector product? > >> > >> > How can I do that? Does MatMFFDSetFunction do this job? > >> > >> For 2) yes, but if the function you provide is different than the > function provided with SNESSetFunction then the matrix-vector product > obtained from differencing it will not be ?correct? Jacobian for the > SNESSetFunction() you are providing so I don?t see why you would do it. > >> > >> For 1) you should use MatCreateShell() and > MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to > SNESSetJacobian(), then PETSc will use that ?matrix? to do its > matrix-vector products. > >> > >> Barry > >> > >> > >> > >> > > >> > Any suggestion is appreciated. Thank you. > >> > > >> > > >> > Song > >> > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From lu_qin_2000 at yahoo.com Wed Jan 8 15:21:32 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Wed, 8 Jan 2014 13:21:32 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib Message-ID: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> Hello, ? I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2?with Intel C/C++/Fortran compilers, it got the following error: ? ===============================================================================??????????????????????????????????????????????????????????????????????????????? TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161)???????????????????????????????????????????????????????????????????? ******************************************************************************* ??????????????????? UNABLE to EXECUTE BINARIES for ./configure ------------------------------------------------------------------------------- Cannot run executables created with FC. If this machine uses a batch system to submit jobs you will need to configure using ./configure with the additional option? --with-batch. ?Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf ******************************************************************************* ? It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. ? Please see the attached configure.log file for details. ? Thanks for your suggestions! ? Regards, Qin -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: configure.log Type: application/octet-stream Size: 1053187 bytes Desc: not available URL: From quecat001 at gmail.com Wed Jan 8 15:24:16 2014 From: quecat001 at gmail.com (Que Cat) Date: Wed, 8 Jan 2014 15:24:16 -0600 Subject: [petsc-users] Equivalent example in the current Petsc version Message-ID: Hello, I am wondering if there is an equivalent example in the current Petsc version for the example http://www.mcs.anl.gov/petsc/petsc-3.2/src/dm/ao/examples/tutorials/ex2.c.html in the Petsc 3.2? Thank you. Que -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Wed Jan 8 15:37:21 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Wed, 08 Jan 2014 14:37:21 -0700 Subject: [petsc-users] Equivalent example in the current Petsc version In-Reply-To: References: Message-ID: <87y52qf94e.fsf@jedbrown.org> Que Cat writes: > Hello, > > I am wondering if there is an equivalent example in the current Petsc > version for the example > http://www.mcs.anl.gov/petsc/petsc-3.2/src/dm/ao/examples/tutorials/ex2.c.html > in > the Petsc 3.2? Thank you. It was removed; see the discussion starting here. http://lists.mcs.anl.gov/pipermail/petsc-dev/2013-May/012132.html We recommend using DMPlex. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jedbrown at mcs.anl.gov Wed Jan 8 15:49:52 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Wed, 08 Jan 2014 14:49:52 -0700 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> Message-ID: <87sisyf8jj.fsf@jedbrown.org> Qin Lu writes: > Hello, > ? > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2?with Intel C/C++/Fortran compilers, it got the following error: Executing: /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort -o /tmp/petsc-3SW45q/config.setCompilers/conftest -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl sh: Executing: /tmp/petsc-3SW45q/config.setCompilers/conftest sh: /tmp/petsc-3SW45q/config.setCompilers/conftest Executing: /tmp/petsc-3SW45q/config.setCompilers/conftest sh: ERROR while running executable: Could not execute "/tmp/petsc-3SW45q/config.setCompilers/conftest": /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 compilers: Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2'] Where is this libirc.so coming from? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Wed Jan 8 16:15:43 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 8 Jan 2014 16:15:43 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> Message-ID: <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> Here is how icc is linking a C main program: ld --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] So when it uses ifort to link something it uses /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort -o /tmp/petsc-3SW45q/config.setCompilers/conftest -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl which when running the code results in ERROR while running executable: Could not execute "/tmp/petsc-3SW45q/config.setCompilers/conftest": /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! Is there a reason to use the 32bit version? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. Barry On Jan 8, 2014, at 3:21 PM, Qin Lu wrote: > Hello, > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: > > =============================================================================== TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) ******************************************************************************* > UNABLE to EXECUTE BINARIES for ./configure > ------------------------------------------------------------------------------- > Cannot run executables created with FC. If this machine uses a batch system > to submit jobs you will need to configure using ./configure with the additional option --with-batch. > Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > ******************************************************************************* > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. > > Please see the attached configure.log file for details. > > Thanks for your suggestions! > > Regards, > Qin > > > From balay at mcs.anl.gov Wed Jan 8 16:25:54 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Wed, 8 Jan 2014 16:25:54 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> Message-ID: > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 17:08:10 EDT 2012', 'i686', 'i686') the machine appears to to be running 32bit linux - so I'm not sure why it has a 64bit libirc.so [and the paths linker is referencing to are 32bit library paths] The workarround to try [for intel compilers] is: --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" Satish The On Wed, 8 Jan 2014, Barry Smith wrote: > > Here is how icc is linking a C main program: > > ld --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > > Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get > > Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > So when it uses ifort to link something it uses > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort -o /tmp/petsc-3SW45q/config.setCompilers/conftest -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > which when running the code results in > > ERROR while running executable: Could not execute "/tmp/petsc-3SW45q/config.setCompilers/conftest": > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. > > I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! > > Is there a reason to use the 32bit version? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. > > Barry > > > > > > > On Jan 8, 2014, at 3:21 PM, Qin Lu wrote: > > > Hello, > > > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: > > > > =============================================================================== TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) ******************************************************************************* > > UNABLE to EXECUTE BINARIES for ./configure > > ------------------------------------------------------------------------------- > > Cannot run executables created with FC. If this machine uses a batch system > > to submit jobs you will need to configure using ./configure with the additional option --with-batch. > > Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > ******************************************************************************* > > > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. > > > > Please see the attached configure.log file for details. > > > > Thanks for your suggestions! > > > > Regards, > > Qin > > > > > > > > From balay at mcs.anl.gov Wed Jan 8 16:35:00 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Wed, 8 Jan 2014 16:35:00 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> Message-ID: > LD_LIBRARY_PATH=/home/dwg/intel/mkl/10.0.011/lib/32:/apps/compilers/intel/Compiler/11.1/056/lib/intel64:/d/dev01/chungh/lib/xerces-c-3.1.0/lib:/apps/pe/utils/local/hdf5/lib:/apps/pe/utils/local/lib64:/apps/pe/utils/local/lib:/usr/lib:/usr/X11R6/lib:/apps/pe/lib_32:/usr/lib You have some 64bit icc stuff setup in your LD_LIBRARY_PATH. This must be the reason for this error. Suggest setting up the [32bit] compilers correctly.. Satish On Wed, 8 Jan 2014, Satish Balay wrote: > > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 17:08:10 EDT 2012', 'i686', 'i686') > > the machine appears to to be running 32bit linux - so I'm not sure why it has a 64bit libirc.so > > [and the paths linker is referencing to are 32bit library paths] > > The workarround to try [for intel compilers] is: > > --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" > > Satish > > The On Wed, 8 Jan 2014, Barry Smith wrote: > > > > > Here is how icc is linking a C main program: > > > > ld --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > > > > Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get > > > > Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > > > So when it uses ifort to link something it uses > > > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort -o /tmp/petsc-3SW45q/config.setCompilers/conftest -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > > > which when running the code results in > > > > ERROR while running executable: Could not execute "/tmp/petsc-3SW45q/config.setCompilers/conftest": > > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > > > Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. > > > > I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! > > > > Is there a reason to use the 32bit version? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. > > > > Barry > > > > > > > > > > > > > > On Jan 8, 2014, at 3:21 PM, Qin Lu wrote: > > > > > Hello, > > > > > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: > > > > > > =============================================================================== TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) ******************************************************************************* > > > UNABLE to EXECUTE BINARIES for ./configure > > > ------------------------------------------------------------------------------- > > > Cannot run executables created with FC. If this machine uses a batch system > > > to submit jobs you will need to configure using ./configure with the additional option --with-batch. > > > Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > > ******************************************************************************* > > > > > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. > > > > > > Please see the attached configure.log file for details. > > > > > > Thanks for your suggestions! > > > > > > Regards, > > > Qin > > > > > > > > > > > > > > From bsmith at mcs.anl.gov Wed Jan 8 22:52:04 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 8 Jan 2014 22:52:04 -0600 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> <87fvp6wgu2.fsf@jedbrown.org> <52C6FEE7.8060005@newmerical.com> <4CAC0C20-40D3-408C-A98C-2162AD378ACB@mcs.anl.gov> Message-ID: I suspect the problem is here: > > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, > > @ ierrpet) In fact I am surprised it didn?t crash at this line, since we don?t have code to handle the PETSC_NULL_INTEGER Try adding the > call SNESGetFunction(snes,f,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,ierrpet); before the > MatMFFDSetBase(myJctx%mf,x,f,ierrpet); that I suggested before. Does that change anything? If you still get different values here is how I would debug it next 1) 1 process 2) run each version separately in the debugger (you can use the options -start_in_debugger noxterm ) 3) put a break point in MatMult(). In most debuggers you just use b MatMult 4) then type c to continue 5) when it stops in MatMult do VecView(x,0) 6) make sure both versions produce the exact same numbers (do they?) 7) then type next several times until it gets to the PetscFunctionReturn(0) line 8) do VecView(y,0) again are both answers identical? By all logic they will be different since the norms you print are different. If (6) produces the same numbers but (8) produces different ones then put a break point in MatMult_MFFD() and call VecView() on ctx->current_u ctx->current_f and a. For both versions they should be the same. Are they? Barry On Jan 8, 2014, at 10:47 AM, Song Gao wrote: > Dear Barry, > > Thanks for reply. I basically implemented your codes. Then I have two > questions. > > The first is I'm working on Fortran. So I can't use MatShellSetContext to > set the structure. Therefore I let the variable I want to set, MyJctx, to > be global. Is there other way to do that? > > The second question is I did some tests. let the D vec to be zero, I > expect the code which I explicit set the matrix-free jacobian and the code > which I use runtime option -snes_mf give the same residual history. But it > doesn't. > > Here is the histories for > > -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type none -snes_view -snes_linesearch_type basic > > 0 SNES Function norm 4.272952196300e-02 > > 0 KSP Residual norm 4.272952196300e-02 > 1 KSP Residual norm 4.234712668718e-02 > 2 KSP Residual norm 3.683301946690e-02 > > 3 KSP Residual norm 3.465586805169e-02 > > 4 KSP Residual norm 3.452667066800e-02 > 5 KSP Residual norm 3.451739518719e-02 > Linear solve did not converge due to DIVERGED_ITS iterations 5 > 1 SNES Function norm 4.203973403992e-02 > > 0 KSP Residual norm 4.203973403992e-02 > > 1 KSP Residual norm 4.203070641961e-02 > 2 KSP Residual norm 4.202387940443e-02 > 3 KSP Residual norm 4.183739347023e-02 > 4 KSP Residual norm 4.183629424897e-02 > > 5 KSP Residual norm 4.159456024825e-02 > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > 2 SNES Function norm 4.200901009970e-02 > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 > > > Here is the histories for > -snes_mf -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type none -snes_view -snes_linesearch_type basic > > > 0 SNES Function norm 4.272952196300e-02 > 0 KSP Residual norm 4.272952196300e-02 > 1 KSP Residual norm 4.270267664569e-02 > 2 KSP Residual norm 3.690026921954e-02 > > 3 KSP Residual norm 3.681740616743e-02 > > 4 KSP Residual norm 3.464377294985e-02 > 5 KSP Residual norm 3.464376048536e-02 > Linear solve did not converge due to DIVERGED_ITS iterations 5 > 1 SNES Function norm 3.461633424373e-02 > > 0 KSP Residual norm 3.461633424373e-02 > > 1 KSP Residual norm 3.461632119472e-02 > 2 KSP Residual norm 3.406130197963e-02 > 3 KSP Residual norm 3.406122155751e-02 > 4 KSP Residual norm 3.403393397001e-02 > > 5 KSP Residual norm 3.403367748538e-02 > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > 2 SNES Function norm 3.403367847002e-02 > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 > > > We can see that at 0 SNES 1 KSP step, the residual norms are different. Did I do something wrong here? > > The codes are like > > type MyJContext > Mat mf > Vec D > Vec work > end type MyJContext > > c > > type(MyJContext) myJctx > > -------------------------------------------------------------------------- > call SNESCreate(PETSC_COMM_WORLD, snes, ierpetsc) > call SNESSetFunction(snes, pet_rhs_snes, flowsolrhs, ctx, > > @ ierpetsc) > > c > call MatCreateSNESMF(snes, myJctx%mf, ierpetsc) > call MatMFFDSetFunction(myJctx%mf, flowsolrhs, ctx, ierpetsc) > call VecDuplicate(pet_solu_snes, myJctx%D, ierpetsc) > > call VecDuplicate(pet_solu_snes, myJctx%work, ierpetsc) > > call VecSet(myJctx%D, 0.0D-3, ierpetsc) > call MatCreateShell(PETSC_COMM_WORLD, pet_nfff, pet_nfff, > @ PETSC_DETERMINE, PETSC_DETERMINE, ctx, myJ, ierpetsc) > > call MatShellSetOperation(myJ, MATOP_MULT, mymultply, > > @ ierpetsc) > call SNESSetJacobian(snes, myJ, pet_mat_pre, > @ flowsoljac, ctx, ierpetsc) > > -------------------------------------------------------------------------- > > > subroutine mymultply ( A, x, y, ierpet) > Mat :: A > Vec :: x, y > PetscErrorCode :: ierpet > c > call MatMult(myJctx%mf,x,y, ierpet) > c > end > -------------------------------------------------------------------------- > > > subroutine flowsoljac ( snes, pet_solu_snes, pet_mat_snes, > @ pet_mat_pre, flag, ctxx, ierrpet ) > > c explicitly assemble pet_mat_pre matrix here > c ......... > c ......... > > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, > > @ ierrpet) > > end > > > > > On Fri, Jan 3, 2014 at 6:46 PM, Barry Smith wrote: > > Dario, > > Your discussion below (SOR, ILU(200)) seems to imply that you are providing some actual explicit representation of the Jacobian, not just doing something completely matrix free. Is this correct? But the PETSc MatMFFD() is completely matrix free, it provides only a matrix-vector product and no access to the matrix entries, hence I am slightly confused. > > If you wish to use for the Jacobian something like D + J and do it completely matrix free then rather than than monkeying with ?changing the function? I would > use the ?correct" function to compute J x using matrix free multiply and then apply the D to as an additional operation. Hence you would do something like > > typedef struct { /* data structure to store the usual matrix free matrix and the additional diagonal matrix */ > Mat mf; > Vec D; > Vec work; > } MyJContext; > > MyJContext myJctx; > > MatCreateSNESMF(SNES,&myJctx.mf); /* create the usual MFFD matrix using the real nonlinear function */ > MatMFFDSetFunction(myJctx.mf,yournonlinearfunction,nonlinearfunctionctx); > VecCreate(comm,&myJctx.D); > /* set the correct sizes for D and fill up with your diagonal matrix entries */ > VecDuplicate(&myJctx.D,&myJCtx.work); > MatCreateShell(comm,?. &myJ); > MatShellSetOperation(myJ,MATOP_MULT, mymultiply); > MatShellSetContext(myJ,&myJctx); > SNESSetJacobian(snes,myJ,myJ, myJFunction,NULL); > > where > > PetscErrorCode mymultply(Mat A,Vec x,Vec y) /* computes y = J x + D x > { > MyJContext *myJctx; > > MatShellGetContext(A,&myJctx); > MatMult(myJctx->mf,x,y); > VecPointwiseMult(myJctx->D,x,myJctx->work); > VecAXPY(y,1.myJctx->work); > } > > and > > PetscErrorCode myJFunction(SNES snes,Vec x,Mat *A,Mat *B,MatStructure *str,void* ctx) > > /* this is called for each new ?Jacobian? to set the point at which it is computed */ > { > MyJContext *myJctx; > Vec f; > MatShellGetContext(*A,&myJctx); > SNESGetFunction(snes,&f); > MatMFFDSetBase(myJctx->mf,x,f); > > /* change the D entries if they depend on the current solution etc */ > return 0; > } > > Sorry now that I have typed it out it looks a bit more complicated then it really is. It does what you want but without any trickery or confusing code. > > But, of course, since it is completely matrix free you cannot use SOR with it. Of course by making D suitably large you can make it as well conditioned as you want and thus get rapid linear convergence (though that may slow down or ruin the nonlinear convergence). > > Hope this helps, > > Barry > > > > > > On Jan 3, 2014, at 12:18 PM, Dario Isola wrote: > > > Dear, Barry and Jed, > > > > Thanks for your replies. > > > > We understand your doubts, so let me to put our question into context. In CFD it is standard practice to solve non-linear equations of conservation for steady flows by means of a inexact Newton method. The original Jacobian matrix is modified by adding terms on the diagonal which are proportional to the Courant number and to the lumped mass matrix. This allows us to obtain two things, "relax" the solution update and increase the diagonal dominance of the matrix itself. > > > > The latter is key when simple preconditioners are adopted, in our case point Jacobi or SOR. Indeed, if the original matrix was to be used, the GMRES method would converge only on very regular meshes and only when adopting ILU preconditioners with a very high level of fill-in. As result a higher number of non-linear iterations is traded with a simpler linear system to be solved. > > > > While exploring the SNES+MF capabilities we found out that we could successfully solve the linear system only with ILU(200) or so. Of course we do not want to touch the function used to evaluate the residual, which determines the final solution. However we think that a suitable modification of the function that Petsc differences to compute the matrix vector product would allow us to obtain a behavior similar to the inexact Newton method. > > > > Best regards, > > Dario > > > > > > On 01/03/2014 12:32 PM, Song Gao wrote: > >> > >> > >> ---------- Forwarded message ---------- > >> From: Jed Brown > >> Date: Thu, Jan 2, 2014 at 10:20 AM > >> Subject: Re: [petsc-users] SNESSetFunction and MatMFFDSetFunction > >> To: Song Gao , Barry Smith > >> Cc: petsc-users > >> > >> > >> Song Gao writes: > >> > >> > Thanks, Barry. > >> > > >> > I mean 2) providing a function that I want PETSc to difference to evaluate > >> > the matrix vector product. > >> > > >> > I want to make a slight modification of the matrix after PETSc evaluate the > >> > matrix vector product. > >> > >> Performing a matrix-vector product is not supposed to modify the matrix. > >> It's unlikely that you really want this. > >> > >> > >> On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith wrote: > >> > >> On Jan 1, 2014, at 11:09 AM, Song Gao wrote: > >> > >> > Dear all, > >> > > >> > Happy new year! > >> > > >> > I'm using the matrix-free method to solve NS equations. I call the SNESSetFunction to set the RHS function. I think SNES also uses that RHS function to evaluate the matrix vector product. > >> > >> Yes, PETSc differences this function to evaluate the matrix vector product. > >> > >> > > >> > But I want to set one function to evaluate the residual, and another different function to evaluate the matrix vector product. > >> > >> Are you providing a function that > >> > >> 1) actually evaluates the matrix vector product or are you > >> > >> 2) providing a function that you want PETSc to difference to evaluate the matrix vector product? > >> > >> > How can I do that? Does MatMFFDSetFunction do this job? > >> > >> For 2) yes, but if the function you provide is different than the function provided with SNESSetFunction then the matrix-vector product obtained from differencing it will not be ?correct? Jacobian for the SNESSetFunction() you are providing so I don?t see why you would do it. > >> > >> For 1) you should use MatCreateShell() and MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to SNESSetJacobian(), then PETSc will use that ?matrix? to do its matrix-vector products. > >> > >> Barry > >> > >> > >> > >> > > >> > Any suggestion is appreciated. Thank you. > >> > > >> > > >> > Song > >> > > > > From lu_qin_2000 at yahoo.com Thu Jan 9 09:25:00 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Thu, 9 Jan 2014 07:25:00 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> Message-ID: <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> Thanks?a lot for pointing out the problem. Configure passed it after I set the path of libirc.so. ? Regards, Qin On Wednesday, January 8, 2014 4:25 PM, Satish Balay wrote: > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 17:08:10 EDT 2012', 'i686', 'i686') the machine appears to to be running 32bit linux - so I'm not sure why it has a 64bit libirc.so [and the paths linker is referencing to are 32bit library paths] The workarround to try [for intel compilers] is: --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" Satish The On Wed, 8 Jan 2014, Barry Smith wrote: > >? Here is how icc is linking a C main program: > > ld? ? --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > >? ? Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get > > Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > So when it uses ifort to link something it uses > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort? -o /tmp/petsc-3SW45q/config.setCompilers/conftest? ? -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > which when running the code results in > > ERROR while running executable: Could not execute "/tmp/petsc-3SW45q/config.setCompilers/conftest": > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. > > I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! > > Is there a reason to use the 32bit version?? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. > > Barry > > > > > > > On Jan 8, 2014, at 3:21 PM, Qin Lu wrote: > > > Hello, > >? > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: > >? > > ===============================================================================? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161)? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ******************************************************************************* > >? ? ? ? ? ? ? ? ? ? UNABLE to EXECUTE BINARIES for ./configure > > ------------------------------------------------------------------------------- > > Cannot run executables created with FC. If this machine uses a batch system > > to submit jobs you will need to configure using ./configure with the additional option? --with-batch. > >? Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > ******************************************************************************* > >? > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. > >? > > Please see the attached configure.log file for details. > >? > > Thanks for your suggestions! > >? > > Regards, > > Qin > >? > >? > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From erocha.ssa at gmail.com Thu Jan 9 09:26:56 2014 From: erocha.ssa at gmail.com (Eduardo) Date: Thu, 9 Jan 2014 13:26:56 -0200 Subject: [petsc-users] SNES question Message-ID: I need to update some state variables in my application at the end of each Newton method iteration. Can I do that inside the routine to compute the nonlinear function or the routine to compute the Jacobian? Can I assume that one (or both) these routines are called only once per Newton iteration? Thanks in advance, Eduardo -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Thu Jan 9 09:31:05 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Thu, 09 Jan 2014 08:31:05 -0700 Subject: [petsc-users] SNES question In-Reply-To: References: Message-ID: <87eh4hdveu.fsf@jedbrown.org> Eduardo writes: > I need to update some state variables in my application at the end of each > Newton method iteration. Can I do that inside the routine to compute the > nonlinear function or the routine to compute the Jacobian? Can I assume > that one (or both) these routines are called only once per Newton iteration? The function can be called several times during a line search, but you probably should be updating the state variables there too. If you really only want to update after the line search completes (so the solution could be incompatible with the state variables), you can use SNESLineSearchSetPostCheck. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From erocha.ssa at gmail.com Thu Jan 9 10:38:19 2014 From: erocha.ssa at gmail.com (Eduardo) Date: Thu, 9 Jan 2014 14:38:19 -0200 Subject: [petsc-users] SNES question In-Reply-To: <87eh4hdveu.fsf@jedbrown.org> References: <87eh4hdveu.fsf@jedbrown.org> Message-ID: Jed Brown: Thanks for your answer. Some of my state variables must only be accumulated at the end of each Newton iteration. So is SNESLineSearchSetPostCheck only called in that occasion for any non-linear solver? Best regards, Eduardo On Thu, Jan 9, 2014 at 1:31 PM, Jed Brown wrote: > Eduardo writes: > > > I need to update some state variables in my application at the end of > each > > Newton method iteration. Can I do that inside the routine to compute the > > nonlinear function or the routine to compute the Jacobian? Can I assume > > that one (or both) these routines are called only once per Newton > iteration? > > The function can be called several times during a line search, but you > probably should be updating the state variables there too. If you > really only want to update after the line search completes (so the > solution could be incompatible with the state variables), you can use > SNESLineSearchSetPostCheck. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Thu Jan 9 10:48:35 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Thu, 09 Jan 2014 09:48:35 -0700 Subject: [petsc-users] SNES question In-Reply-To: References: <87eh4hdveu.fsf@jedbrown.org> Message-ID: <878uupdrto.fsf@jedbrown.org> Eduardo writes: > Thanks for your answer. Some of my state variables must only be accumulated > at the end of each Newton iteration. How do you define a "Newton iteration"? > So is SNESLineSearchSetPostCheck only called in that occasion for any > non-linear solver? It is called after the line search decides to accept a step. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From lu_qin_2000 at yahoo.com Thu Jan 9 11:38:31 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Thu, 9 Jan 2014 09:38:31 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> Message-ID: <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> Now it got new problem later in configure: it?does not like the Hypre lib :"Possible ERROR while running linker: ld: skipping incompatible /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a when searching for -lHYPRE". Please see the attached log file for details. ? I built the Hypre-2.8.0b using the same Intel compilers as PETSc. ? Thanks for any ideas, Qin On Thursday, January 9, 2014 9:25 AM, Qin Lu wrote: Thanks?a lot for pointing out the problem. Configure passed it after I set the path of libirc.so. ? Regards, Qin On Wednesday, January 8, 2014 4:25 PM, Satish Balay wrote: > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 17:08:10 EDT 2012', 'i686', 'i686') the machine appears to to be running 32bit linux - so I'm not sure why it has a 64bit libirc.so [and the paths linker is referencing to are 32bit library paths] The workarround to try [for intel compilers] is: --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" Satish The On Wed, 8 Jan 2014, Barry Smith wrote: > >? Here is how icc is linking a C main program: > > ld? ? --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > >? ? Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get > > Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > So when it uses ifort to link something it uses > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort? -o /tmp/petsc-3SW45q/config.setCompilers/conftest? ? -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > which when running the code results in > > ERROR while running executable: Could not execute "/tmp/petsc-3SW45q/config.setCompilers/conftest": > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. > > I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! > > Is there a reason to use the 32bit version?? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. > > Barry > > > > > > > On Jan 8, 2014, at 3:21 PM, Qin Lu wrote: > > > Hello, > >? > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: > >? > > ===============================================================================? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161)? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ******************************************************************************* > >? ? ? ? ? ? ? ? ? ? UNABLE to EXECUTE BINARIES for ./configure > > ------------------------------------------------------------------------------- > > Cannot run executables created with FC. If this machine uses a batch system > > to submit jobs you will need to configure using ./configure with the additional option? --with-batch. > >? Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > ******************************************************************************* > >? > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. > >? > > Please see the attached configure.log file for details. > >? > > Thanks for your suggestions! > >? > > Regards, > > Qin > >? > >? > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: configure.log.with_hypre.32bit URL: From balay at mcs.anl.gov Thu Jan 9 11:43:17 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Thu, 9 Jan 2014 11:43:17 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> Message-ID: Well the compiler [ld] doesn't appear to like the hypre library you built. What do you have for: file /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a Why not use --download-hypre=1 ? Satish On Thu, 9 Jan 2014, Qin Lu wrote: > Now it got new problem later in configure: it?does not like the Hypre lib :"Possible ERROR while running linker: ld: skipping incompatible /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a when searching for -lHYPRE". Please see the attached log file for details. > ? > I built the Hypre-2.8.0b using the same Intel compilers as PETSc. > ? > Thanks for any ideas, > Qin > > > > On Thursday, January 9, 2014 9:25 AM, Qin Lu wrote: > > Thanks?a lot for pointing out the problem. Configure passed it after I set the path of libirc.so. > ? > Regards, > Qin > > > > On Wednesday, January 8, 2014 4:25 PM, Satish Balay wrote: > > > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 17:08:10 EDT 2012', 'i686', 'i686') > > the machine appears to to be running 32bit linux - so I'm not sure why it has a 64bit libirc.so > > [and the paths linker is referencing to are 32bit library paths] > > The workarround to try [for intel compilers] is: > > --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" > > Satish > > > The On Wed, 8 Jan 2014, Barry Smith wrote: > > > > >? Here is how icc is linking a C main program: > > > > ld? ? --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 > -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > > > >? ? Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get > > > > Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', > '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > > > So when it uses ifort to link something it uses > > > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort? -o /tmp/petsc-3SW45q/config.setCompilers/conftest? ? -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > > > which when running the code results in > > > > ERROR while running executable: Could not execute > "/tmp/petsc-3SW45q/config.setCompilers/conftest": > > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > > > Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. > > > > I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! > > > > Is there a reason to use the 32bit version?? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. > > > > Barry > > > > > > > > > > > > > > On Jan 8, 2014, at 3:21 > PM, Qin Lu wrote: > > > > > Hello, > > >? > > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: > > >? > > > ===============================================================================? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? TESTING: checkCLibraries from > config.compilers(config/BuildSystem/config/compilers.py:161)? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ******************************************************************************* > > >? ? ? ? ? ? ? ? ? ? UNABLE to EXECUTE BINARIES for ./configure > > > ------------------------------------------------------------------------------- > > > Cannot run executables created with FC. If this machine uses a batch system > > > to submit jobs you will need to configure using ./configure with the additional option? --with-batch. > > >? Otherwise there is problem with the compilers. Can you compile and run code > with your C/C++ (and maybe Fortran) compilers? > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > > ******************************************************************************* > > >? > > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. > > >? > > > Please see the attached configure.log file for details. > > >? > > > Thanks for your suggestions! > > >? > > > Regards, > > > Qin > > >? > > >? > > > > > > > > > From erocha.ssa at gmail.com Thu Jan 9 12:36:48 2014 From: erocha.ssa at gmail.com (Eduardo) Date: Thu, 9 Jan 2014 16:36:48 -0200 Subject: [petsc-users] SNES question In-Reply-To: <878uupdrto.fsf@jedbrown.org> References: <87eh4hdveu.fsf@jedbrown.org> <878uupdrto.fsf@jedbrown.org> Message-ID: > How do you define a "Newton iteration"? > Equation 5.2 of the Petsc manual. Eduardo -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Thu Jan 9 14:29:48 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Thu, 09 Jan 2014 13:29:48 -0700 Subject: [petsc-users] SNES question In-Reply-To: References: <87eh4hdveu.fsf@jedbrown.org> <878uupdrto.fsf@jedbrown.org> Message-ID: <87iotsdhkz.fsf@jedbrown.org> Eduardo writes: >> How do you define a "Newton iteration"? >> > > Equation 5.2 of the Petsc manual. This is overly simplistic. In reality, "Newton solvers" solve the linear system J[x_k] y = - F[x_k] to get a tentative step y, but then perform a line search to find \gamma in x_{k+1} = x_k + \gamma y the line search re-evaluates F[x_k + \gamma' y] for one or more values of \gamma' (usually starting from \gamma' = 1). The default line search is "backtracking", so if \gamma' = 1 gave sufficient decrease in the norm of the residual, the step is accepted. For harder problems or with different line searches, F will be evaluated at more than one place. I recommend doing your "update" at the start of the function that evaluates F. It's safer, though there are non-smooth problems where it's not the best (though the better fixes are more complicated). If you take it out of F, you should have a clear rationale for doing so. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From lu_qin_2000 at yahoo.com Thu Jan 9 15:05:00 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Thu, 9 Jan 2014 13:05:00 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> Message-ID: <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> Is the linker ld compitable with Intel compilers? ? If I use --download-hypre=1, will it?download the 32-bit?Hypre lib that is consistent with my MPI lib and my PETSc lib built with Intel compilers? ? Thanks, Qin On Thursday, January 9, 2014 11:43 AM, Satish Balay wrote: Well the compiler [ld] doesn't appear to like the hypre library you built. What do you have for: file /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a Why not use --download-hypre=1 ? Satish On Thu, 9 Jan 2014, Qin Lu wrote: > Now it got new problem later in configure: it?does not like the Hypre lib :"Possible ERROR while running linker: ld: skipping incompatible /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a when searching for -lHYPRE". Please see the attached log file for details. > ? > I built the Hypre-2.8.0b using the same Intel compilers as PETSc. > ? > Thanks for any ideas, > Qin > > > > On Thursday, January 9, 2014 9:25 AM, Qin Lu wrote: >? > Thanks?a lot for pointing out the problem. Configure passed it after I set the path of libirc.so. > ? > Regards, > Qin > > > > On Wednesday, January 8, 2014 4:25 PM, Satish Balay wrote: >? > > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 17:08:10 EDT 2012', 'i686', 'i686') > > the machine appears to to be running 32bit linux - so I'm not sure why it has a 64bit libirc.so > > [and the paths linker is referencing to are 32bit library paths] > > The workarround to try [for intel compilers] is: > > --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" > > Satish > > > The On Wed, 8 Jan 2014, Barry Smith wrote: > > > > >?? Here is how icc is linking a C main program: > > > > ld? ? --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 >? -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > > > >? ? Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get > > > > Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', >? '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > > > So when it uses ifort to link something it uses > > > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort? -o /tmp/petsc-3SW45q/config.setCompilers/conftest? ? -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > > > which when running the code results in > > > > ERROR while running executable: Could not execute >? "/tmp/petsc-3SW45q/config.setCompilers/conftest": > > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > > > Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. > > > > I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! > > > > Is there a reason to use the 32bit version?? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. > > > > Barry > > > > > > > > > > > > > > On Jan 8, 2014, at 3:21 >? PM, Qin Lu wrote: > > > > > Hello, > > >? > > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: > > >? > > > ===============================================================================? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? TESTING: checkCLibraries from >? config.compilers(config/BuildSystem/config/compilers.py:161)? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ******************************************************************************* > > >? ? ? ? ? ? ? ? ? ?? UNABLE to EXECUTE BINARIES for ./configure > > > ------------------------------------------------------------------------------- > > > Cannot run executables created with FC. If this machine uses a batch system > > > to submit jobs you will need to configure using ./configure with the additional option? --with-batch. > > >? Otherwise there is problem with the compilers. Can you compile and run code >? with your C/C++ (and maybe Fortran) compilers? > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > > ******************************************************************************* > > >? > > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. > > >? > > > Please see the attached configure.log file for details. > > >? > > > Thanks for your suggestions! > > >? > > > Regards, > > > Qin > > >? > > >? > > > >? > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 9 15:07:21 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 9 Jan 2014 15:07:21 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> Message-ID: On Thu, Jan 9, 2014 at 3:05 PM, Qin Lu wrote: > Is the linker ld compitable with Intel compilers? > > If I use --download-hypre=1, will it download the 32-bit Hypre lib that is > consistent with my MPI lib and my PETSc lib built with Intel compilers? > It will build it from source. Matt > > Thanks, > Qin > > > On Thursday, January 9, 2014 11:43 AM, Satish Balay > wrote: > Well the compiler [ld] doesn't appear to like the hypre library you > built. > > What do you have for: > > file /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a > > Why not use --download-hypre=1 ? > > Satish > > On Thu, 9 Jan 2014, Qin Lu wrote: > > > Now it got new problem later in configure: it does not like the Hypre > lib :"Possible ERROR while running linker: ld: skipping incompatible > /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a when searching for > -lHYPRE". Please see the attached log file for details. > > > > I built the Hypre-2.8.0b using the same Intel compilers as PETSc. > > > > Thanks for any ideas, > > Qin > > > > > > > > On Thursday, January 9, 2014 9:25 AM, Qin Lu > wrote: > > > > Thanks a lot for pointing out the problem. Configure passed it after I > set the path of libirc.so. > > > > Regards, > > Qin > > > > > > > > On Wednesday, January 8, 2014 4:25 PM, Satish Balay > wrote: > > > > > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 > 17:08:10 EDT 2012', 'i686', 'i686') > > > > the machine appears to to be running 32bit linux - so I'm not sure why > it has a 64bit libirc.so > > > > [and the paths linker is referencing to are 32bit library paths] > > > > The workarround to try [for intel compilers] is: > > > > --with-clib-autodetect=0 --with-fortranlib-autodetect=0 > --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" > > > > Satish > > > > > > The On Wed, 8 Jan 2014, Barry Smith wrote: > > > > > > > > Here is how icc is linking a C main program: > > > > > > ld --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o > /tmp/petsc-3SW45q/config.compilers/conftest > -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 > > -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ > -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib > /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o > /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o > /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o > /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml > -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic > -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc > /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o > /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > > > > > > Since PETSc uses C if you use Fortran it needs to link against this > same stuff with the intel Fortran linker. We try to rationalize the above > list and get > > > > > > Libraries needed to link C code with another linker: ['-ldl', > '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', > > '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', > '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', > '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', > '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > > > > > So when it uses ifort to link something it uses > > > > > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort -o > /tmp/petsc-3SW45q/config.setCompilers/conftest -O3 > /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl > -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 > -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal > -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 > -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > > > > > which when running the code results in > > > > > > ERROR while running executable: Could not execute > > "/tmp/petsc-3SW45q/config.setCompilers/conftest": > > > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading > shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > > > > > Because the -Bstatic are stripped from the link line the wrong > libirc.so gets picked up by the linker resulting in the runtime error. > > > > > > I?ve seen these perverse icc link lines mess things up before but > don?t remember a solution. Satish must remember! > > > > > > Is there a reason to use the 32bit version? Have you tried using the > 64 bit compilers ? Generally I don?t think there is a reason to use 32bit > now a days. > > > > > > Barry > > > > > > > > > > > > > > > > > > > > > On Jan 8, 2014, at 3:21 > > PM, Qin Lu wrote: > > > > > > > Hello, > > > > > > > > I am trying to build a Linux 32-bit PETSc lib. I first built > python-2.7.5 in a 32-bit Linux workstation without problem, then used this > python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got > the following error: > > > > > > > > > =============================================================================== > > TESTING: checkCLibraries from > > config.compilers(config/BuildSystem/config/compilers.py:161) > > ******************************************************************************* > > > > UNABLE to EXECUTE BINARIES for ./configure > > > > > ------------------------------------------------------------------------------- > > > > Cannot run executables created with FC. If this machine uses a batch > system > > > > to submit jobs you will need to configure using ./configure with the > additional option --with-batch. > > > > Otherwise there is problem with the compilers. Can you compile and > run code > > with your C/C++ (and maybe Fortran) compilers? > > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > > > > ******************************************************************************* > > > > > > > > It seems that a test program built with the given Intel ifort does > not run. But I have built another program using ifort in the same > workstation and it runs fine. > > > > > > > > Please see the attached configure.log file for details. > > > > > > > > Thanks for your suggestions! > > > > > > > > Regards, > > > > Qin > > > > > > > > > > > > > > > > > > > > > > > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From lu_qin_2000 at yahoo.com Thu Jan 9 15:32:41 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Thu, 9 Jan 2014 13:32:41 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> Message-ID: <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> Can I specify the what version of Hypre to download? Do I need to use --with-hypre=1 and specify --with-hypre-dir? It will be nice if you may point me to a sample setting of configure options using --download-hypre. ? Thanks, Qin On Thursday, January 9, 2014 3:07 PM, Matthew Knepley wrote: On Thu, Jan 9, 2014 at 3:05 PM, Qin Lu wrote: Is the linker ld compitable with Intel compilers? >? >If I use --download-hypre=1, will it?download the 32-bit?Hypre lib that is consistent with my MPI lib and my PETSc lib built with Intel compilers? It will build it from source. ? ?Matt ? >Thanks, >Qin > > > >On Thursday, January 9, 2014 11:43 AM, Satish Balay wrote: > >Well the compiler [ld] doesn't appear to like the hypre library you built. > >What do you have for: > >file /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a > >Why not use --download-hypre=1 ? > >Satish > > >On Thu, 9 Jan 2014, Qin Lu wrote: > >> Now it got new problem later in configure: it?does not like the Hypre lib :"Possible ERROR while running linker: ld: skipping incompatible /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a when searching for -lHYPRE". Please see the attached log file for details. >> ? >> I built the Hypre-2.8.0b using the same Intel compilers as PETSc. >> ? >> Thanks for any ideas, >> Qin >> >> >> >> On Thursday, January 9, 2014 9:25 AM, Qin Lu wrote: >>? >> Thanks?a lot for pointing out the problem. Configure passed it after I set the path of libirc.so. >> ? >> Regards, >> Qin >> >> >> >> On Wednesday, January 8, 2014 4:25 PM, Satish Balay wrote: >>? >> > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 17:08:10 EDT 2012', 'i686', 'i686') >> >> the machine appears to to be running 32bit linux - so I'm not sure why it has a 64bit libirc.so >> >> [and the paths linker is referencing to are 32bit library paths] >> >> The workarround to try [for intel compilers] is: >> >> --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" >> >> Satish >> >> >> The On Wed, 8 Jan 2014, Barry Smith wrote: >> >> > >> >?? Here is how icc is linking a C main program: >> > >> > ld? ? --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o /tmp/petsc-3SW45q/config.compilers/conftest -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 >>? -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o >> > >> >? ? Since PETSc uses C if you use Fortran it needs to link against this same stuff with the intel Fortran linker. We try to rationalize the above list and get >> > >> > Libraries needed to link C code with another linker: ['-ldl', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', >>? '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] >> > >> > So when it uses ifort to link something it uses >> > >> > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort? -o /tmp/petsc-3SW45q/config.setCompilers/conftest? ? -O3 /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl >> > >> > which when running the code results in >> > >> > ERROR while running executable: Could not execute >>? "/tmp/petsc-3SW45q/config.setCompilers/conftest": >> > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading shared libraries: libirc.so: wrong ELF class: ELFCLASS64 >> > >> > Because the -Bstatic are stripped from the link line the wrong libirc.so gets picked up by the linker resulting in the runtime error. >> > >> > I?ve seen these perverse icc link lines mess things up before but don?t remember a solution. Satish must remember! >> > >> > Is there a reason to use the 32bit version?? Have you tried using the 64 bit compilers ? Generally I don?t think there is a reason to use 32bit now a days. >> > >> > Barry >> > >> > >> > >> > >> > >> > >> > On Jan 8, 2014, at 3:21 >>? PM, Qin Lu wrote: >> > >> > > Hello, >> > >? >> > > I am trying to build a Linux 32-bit PETSc lib. I first built python-2.7.5 in a 32-bit Linux workstation without problem, then used this python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got the following error: >> > >? >> > > ===============================================================================? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? TESTING: checkCLibraries from >>? config.compilers(config/BuildSystem/config/compilers.py:161)? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ******************************************************************************* >> > >? ? ? ? ? ? ? ? ? ?? UNABLE to EXECUTE BINARIES for ./configure >> > > ------------------------------------------------------------------------------- >> > > Cannot run executables created with FC. If this machine uses a batch system >> > > to submit jobs you will need to configure using ./configure with the additional option? --with-batch. >> > >? Otherwise there is problem with the compilers. Can you compile and run code >>? with your C/C++ (and maybe Fortran) compilers? >> > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf >> > > ******************************************************************************* >> > >? >> > > It seems that a test program built with the given Intel ifort does not run. But I have built another program using ifort in the same workstation and it runs fine. >> > >? >> > > Please see the attached configure.log file for details. >> > >? >> > > Thanks for your suggestions! >> > >? >> > > Regards, >> > > Qin >> > >? >> > >? >> > > >>? >> > >> > >> > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 9 15:37:45 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 9 Jan 2014 15:37:45 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> Message-ID: On Thu, Jan 9, 2014 at 3:32 PM, Qin Lu wrote: > Can I specify the what version of Hypre to download? Do I need to use > --with-hypre=1 and specify --with-hypre-dir? It will be nice if you may > point me to a sample setting of configure options using --download-hypre. > No. That is the only option. Matt > > Thanks, > Qin > > > On Thursday, January 9, 2014 3:07 PM, Matthew Knepley > wrote: > On Thu, Jan 9, 2014 at 3:05 PM, Qin Lu wrote: > > Is the linker ld compitable with Intel compilers? > > If I use --download-hypre=1, will it download the 32-bit Hypre lib that is > consistent with my MPI lib and my PETSc lib built with Intel compilers? > > > It will build it from source. > > Matt > > > > Thanks, > Qin > > > On Thursday, January 9, 2014 11:43 AM, Satish Balay > wrote: > Well the compiler [ld] doesn't appear to like the hypre library you > built. > > What do you have for: > > file /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a > > Why not use --download-hypre=1 ? > > Satish > > On Thu, 9 Jan 2014, Qin Lu wrote: > > > Now it got new problem later in configure: it does not like the Hypre > lib :"Possible ERROR while running linker: ld: skipping incompatible > /d/dev01/qlu/Lib/hypre-2.8.0b/LINUX_32/lib/libHYPRE.a when searching for > -lHYPRE". Please see the attached log file for details. > > > > I built the Hypre-2.8.0b using the same Intel compilers as PETSc. > > > > Thanks for any ideas, > > Qin > > > > > > > > On Thursday, January 9, 2014 9:25 AM, Qin Lu > wrote: > > > > Thanks a lot for pointing out the problem. Configure passed it after I > set the path of libirc.so. > > > > Regards, > > Qin > > > > > > > > On Wednesday, January 8, 2014 4:25 PM, Satish Balay > wrote: > > > > > ('Linux', 'houhpclc01', '2.6.18-308.4.1.el5', '#1 SMP Tue Apr 17 > 17:08:10 EDT 2012', 'i686', 'i686') > > > > the machine appears to to be running 32bit linux - so I'm not sure why > it has a 64bit libirc.so > > > > [and the paths linker is referencing to are 32bit library paths] > > > > The workarround to try [for intel compilers] is: > > > > --with-clib-autodetect=0 --with-fortranlib-autodetect=0 > --with-cxxlib-autodetect=0 LIBS="-Bstatic -lifcore -Bdynamic" > > > > Satish > > > > > > The On Wed, 8 Jan 2014, Barry Smith wrote: > > > > > > > > Here is how icc is linking a C main program: > > > > > > ld --eh-frame-hdr -dynamic-linker /lib/ld-linux.so.2 -m elf_i386 -o > /tmp/petsc-3SW45q/config.compilers/conftest > -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 > > -L/usr/lib/gcc/i386-redhat-linux/4.1.2/ > -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ -L/lib/ -L/usr/lib > /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crt1.o > /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o > /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbegin.o > /tmp/petsc-3SW45q/config.compilers/conftest.o -ldl -Bstatic -limf -lsvml > -Bdynamic -lm -Bstatic -lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic > -lirc -Bdynamic -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc > /usr/lib/gcc/i386-redhat-linux/4.1.2/crtend.o > /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o > > > > > > Since PETSc uses C if you use Fortran it needs to link against this > same stuff with the intel Fortran linker. We try to rationalize the above > list and get > > > > > > Libraries needed to link C code with another linker: ['-ldl', > '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', > > '-L/usr/lib/gcc/i386-redhat-linux/4.1.2', '-limf', '-lsvml', '-lipgo', > '-ldecimal', '-lgcc_s', '-lirc', '-lirc_s', > '-L/apps/compilers/intel/Compiler/11.1/056/lib/ia32', > '-L/usr/lib/gcc/i386-redhat-linux/4.1.2?] > > > > > > So when it uses ifort to link something it uses > > > > > > /apps/compilers/intel/Compiler/11.1/056/bin/ia32/ifort -o > /tmp/petsc-3SW45q/config.setCompilers/conftest -O3 > /tmp/petsc-3SW45q/config.setCompilers/conftest.o -ldl > -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 > -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal > -lgcc_s -lirc -lirc_s -L/apps/compilers/intel/Compiler/11.1/056/lib/ia32 > -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -ldl > > > > > > which when running the code results in > > > > > > ERROR while running executable: Could not execute > > "/tmp/petsc-3SW45q/config.setCompilers/conftest": > > > /tmp/petsc-3SW45q/config.setCompilers/conftest: error while loading > shared libraries: libirc.so: wrong ELF class: ELFCLASS64 > > > > > > Because the -Bstatic are stripped from the link line the wrong > libirc.so gets picked up by the linker resulting in the runtime error. > > > > > > I?ve seen these perverse icc link lines mess things up before but > don?t remember a solution. Satish must remember! > > > > > > Is there a reason to use the 32bit version? Have you tried using the > 64 bit compilers ? Generally I don?t think there is a reason to use 32bit > now a days. > > > > > > Barry > > > > > > > > > > > > > > > > > > > > > On Jan 8, 2014, at 3:21 > > PM, Qin Lu wrote: > > > > > > > Hello, > > > > > > > > I am trying to build a Linux 32-bit PETSc lib. I first built > python-2.7.5 in a 32-bit Linux workstation without problem, then used this > python to configure PETSc-3.4.2 with Intel C/C++/Fortran compilers, it got > the following error: > > > > > > > > > =============================================================================== > > TESTING: checkCLibraries from > > config.compilers(config/BuildSystem/config/compilers.py:161) > > ******************************************************************************* > > > > UNABLE to EXECUTE BINARIES for ./configure > > > > > ------------------------------------------------------------------------------- > > > > Cannot run executables created with FC. If this machine uses a batch > system > > > > to submit jobs you will need to configure using ./configure with the > additional option --with-batch. > > > > Otherwise there is problem with the compilers. Can you compile and > run code > > with your C/C++ (and maybe Fortran) compilers? > > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf > > > > > ******************************************************************************* > > > > > > > > It seems that a test program built with the given Intel ifort does > not run. But I have built another program using ifort in the same > workstation and it runs fine. > > > > > > > > Please see the attached configure.log file for details. > > > > > > > > Thanks for your suggestions! > > > > > > > > Regards, > > > > Qin > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Thu Jan 9 15:45:07 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Thu, 9 Jan 2014 15:45:07 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> Message-ID: On Thu, 9 Jan 2014, Matthew Knepley wrote: > On Thu, Jan 9, 2014 at 3:32 PM, Qin Lu wrote: > > > Can I specify the what version of Hypre to download? Do I need to use > > --with-hypre=1 and specify --with-hypre-dir? It will be nice if you may > > point me to a sample setting of configure options using --download-hypre. > > > > No. That is the only option. Why would you want a different version of hypre than what was tested with ? petsc-3.4 is tested with https://computation.llnl.gov/casc/hypre/download/hypre-2.9.1a.tar.gz and you can use it with: --download-hypre=1 I don't remember if there were any changes on the interface or installation of hypre - but you can try the following and see if it works.. --download-hypre=http://ftp.mcs.anl.gov/pub/petsc/externalpackages/hypre-2.8.0b.tar.gz Satish From lu_qin_2000 at yahoo.com Thu Jan 9 16:09:10 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Thu, 9 Jan 2014 14:09:10 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> Message-ID: <1389305350.31524.YahooMailNeo@web160202.mail.bf1.yahoo.com> I am going to use this option. Just one more thing to confirm: I run "configure -hlep" and it says to use --download-hypre=yes (insted of 1), which one is correct? ? Thanks, Qin On Thursday, January 9, 2014 3:45 PM, Satish Balay wrote: On Thu, 9 Jan 2014, Matthew Knepley wrote: > On Thu, Jan 9, 2014 at 3:32 PM, Qin Lu wrote: > > > Can I specify the what version of Hypre to download? Do I need to use > > --with-hypre=1 and specify --with-hypre-dir? It will be nice if you may > > point me to a sample setting of configure options using --download-hypre. > > > > No. That is the only option. Why would you want a different version of hypre than what was tested with ? petsc-3.4 is tested with https://computation.llnl.gov/casc/hypre/download/hypre-2.9.1a.tar.gz and you can use it with: --download-hypre=1 I don't remember if there were any changes on the interface or installation of hypre - but you can try the following and see if it works.. --download-hypre=http://ftp.mcs.anl.gov/pub/petsc/externalpackages/hypre-2.8.0b.tar.gz Satish -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Thu Jan 9 16:13:00 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Thu, 9 Jan 2014 16:13:00 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389305350.31524.YahooMailNeo@web160202.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> <1389305350.31524.YahooMailNeo@web160202.mail.bf1.yahoo.com> Message-ID: On Thu, 9 Jan 2014, Qin Lu wrote: > I am going to use this option. Just one more thing to confirm: I run "configure -hlep" and it says to use --download-hypre=yes (insted of 1), which one is correct? configure accepts both 0,1 or no,yes for such boolean flags Satish From gshy2014 at gmail.com Thu Jan 9 20:52:09 2014 From: gshy2014 at gmail.com (Shiyuan) Date: Thu, 9 Jan 2014 18:52:09 -0800 Subject: [petsc-users] How petsc build openmpi using clang on Mavericks Message-ID: Hi, I am on OS Mavericks and using the gcc in Xcode 5.02. I configured petsc using the following options and installed petsc successfully. Petsc also downloaded and installed openmpi successfully. However, when I go to the $PETSC_DIR/$PETSC_ARCH/externalpackages/openmpi-1.6.4 and and run configure with the same options(found in openmpi-1.6.4/config.log), the configuration of openmpi failed due to the test for c compiler failed: checking for gcc... gcc checking whether the C compiler works... no configure: error: in `/Users/shiyuangu/softwares/openmpi/1.6.4': configure: error: C compiler cannot create executables When petsc configure openmpi, does petsc use clang too? If so, how does petsc build openmpi using clang? configure.log is attached. Thanks. Shiyuan -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: configure.log Type: application/octet-stream Size: 2723889 bytes Desc: not available URL: From balay at mcs.anl.gov Thu Jan 9 21:35:04 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Thu, 9 Jan 2014 21:35:04 -0600 Subject: [petsc-users] How petsc build openmpi using clang on Mavericks In-Reply-To: References: Message-ID: On Thu, 9 Jan 2014, Shiyuan wrote: > Hi, > I am on OS Mavericks and using the gcc in Xcode 5.02. I configured petsc > using the following options and installed petsc successfully. Petsc also > downloaded and installed openmpi successfully. > > However, when I go to the > $PETSC_DIR/$PETSC_ARCH/externalpackages/openmpi-1.6.4 and and run configure > with the same options(found in openmpi-1.6.4/config.log), the configuration > of openmpi failed due to the test for c compiler failed: > > checking for gcc... gcc > > checking whether the C compiler works... no > > configure: error: in `/Users/shiyuangu/softwares/openmpi/1.6.4': > > configure: error: C compiler cannot create executables you'll have to check the details in config.log to see why this test fails. > > When petsc configure openmpi, does petsc use clang too? If so, how does > petsc build openmpi using clang? configure.log is attached. PETSc is not doing anyting special for this machine. Its building openmpi using: >>> Executing: cd /Users/shiyuangu/softwares/petsc/dbg/externalpackages/openmpi-1.6.4 && ./configure --prefix=/Users/shiyuangu/softwares/petsc/dbg --with-rsh=ssh MAKE=/usr/bin/make CC="gcc" CFLAGS=" -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O0 " --enable-shared CXX="g++" CXXFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O0 -fPIC " --disable-mpi-f77 --disable-mpi-f90 F77="" FC="" --disable-vt <<<<< On Mavericks/Xcode-5.02 /usr/bin/gcc is clang compiler - not GNU compiler. [eventhoug the name 'gcc' is misleading] >>> Executing: gcc --version stdout: Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) <<<< Satish From zonexo at gmail.com Thu Jan 9 22:42:00 2014 From: zonexo at gmail.com (TAY wee-beng) Date: Fri, 10 Jan 2014 12:42:00 +0800 Subject: [petsc-users] Strange program abort after PetscInitialize Message-ID: <52CF7A18.9010506@gmail.com> Hi, I have some problems with file writing when my code is about to end. To find out the problem, I now compiled and built in debug mode. However, now it can't even go past the 1st line of code: call PetscInitialize(PETSC_NULL_CHARACTER,ierr) The error I got is: */[0]PETSC ERROR: ------------------------------------------------------------------------/**/ /**/[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero/**/ /**/[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger/**/ /**/[0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: [21]PETSC ERROR: ------------------------------------------------------------------------/**/ /**/[21]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero/**/ /**/[21]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger/**/ /**/[21]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[21]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors/**/ /**/[21]PETSC ERROR: or try option -log_stack/**/ /**/[21]PETSC ERROR: --------------------- Error Message ------------------------------------/**/ /**/[21]PETSC ERROR: Signal received!/**/ /**/[21]PETSC ERROR: ------------------------------------------------------------------------/**/ /**/[21]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013/**/ /**/[21]PETSC ERROR: See docs/changes/index.html for recent updates./**/ /**/[21]PETSC ERROR: See docs/faq.html for hints about trouble shooting./**/ /**/[21]PETSC ERROR: See docs/index.html for manual pages./**/ /**/[21]PETSC ERROR: ------------------------------------------------------------------------/**/ /**/[21]PETSC ERROR: ./a.out on a petsc-3.4.3_debug named fuji412 by exttaywb Fri Jan 10 12:31:27 2014/**/ /**/[21]PETSC ERROR: Libraries linked from /home01/xuser/exttaywb/DATA/lib/petsc-3.4.3_debug/lib/**/ /**/[21]PETSC ERROR: Configure run at Fri Dec 27 09:53:06 2013/**/ /**/[21]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-blas-lapack-dir=/opt/intel/mkl/2011.2.137/lib/intel64/ --with-debugging=1 --prefix=/home01/xuser/exttaywb/DATA/lib/petsc-3.4.3_debug --with-cc=/opt/intel/impi/4.0.1.007/intel64/bin/mpiicc --with-fc=/opt/intel/impi/4.0.1.007/intel64/bin/mpiifort --with-cxx=/opt/intel/impi/4.0.1.007/intel64/bin/mpiicpc --download-hypre=1 --known-mpi-shared-libraries=0 --with-batch=1 --with-shared-libraries=0/**/ /**/[21]PETSC ERROR: ------------------------------------------------------------------------/**/ /**/[21]PETSC ERROR: User provided function() line 0 in unknown directory unknown file/**/ /**/application called MPI_Abort(MPI_COMM_WORLD, 59) - process 21/**/ /**/[22]PETSC ERROR: ------------------------------------------------------------------------/**/ /**/[22]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero/**/ /**/[22]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger/**/ /**/[22]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[22]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors/**/ /**/[22]PETSC ERROR: or try option -log_stacor try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors/**/ /**/[0]PETSC ERROR: or try option -log_stack/**/ /**/[0]PETSC ERROR: --------------------- Error Message ------------------------------------/**/ /**/[0]PETSC ERROR: Signal received!/**/ /**/[0]PETSC ERROR: ------------------------------------------------------------------------/**/ /**/[0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013/**/ /**/[0]PETSC ERROR: See docs/changes/index.html for recent updates./* ... Strangely, it happens only if I built in debug mode. I tried to built ex2f using the same way but it does not happen. It only happens if I run in mpi ie >1 cpu. Do you have any idea what's going on? Let me know if you need more info Thanks! -- Yours sincerely, TAY wee-beng -------------- next part -------------- An HTML attachment was scrubbed... URL: From jedbrown at mcs.anl.gov Thu Jan 9 22:50:47 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Thu, 09 Jan 2014 21:50:47 -0700 Subject: [petsc-users] Strange program abort after PetscInitialize In-Reply-To: <52CF7A18.9010506@gmail.com> References: <52CF7A18.9010506@gmail.com> Message-ID: <87ppo0a194.fsf@jedbrown.org> TAY wee-beng writes: > Hi, > > I have some problems with file writing when my code is about to end. To > find out the problem, I now compiled and built in debug mode. However, > now it can't even go past the 1st line of code: Run in serial in a debugger. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From lu_qin_2000 at yahoo.com Fri Jan 10 09:22:49 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Fri, 10 Jan 2014 07:22:49 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> <1389305350.31524.YahooMailNeo@web160202.mail.bf1.yahoo.com> Message-ID: <1389367369.9153.YahooMailNeo@web160203.mail.bf1.yahoo.com> Hello, ? Since my Linux workstation does not have internet access, I downloaded hypre-2.9.1a.tar.gz and used --download-hypre=/d/dev01/qlu/Lib/hypre-2.9.1a.tar.gz instead. The configure gave the following error: ? ******************************************************************************* ???????? UNABLE to CONFIGURE with GIVEN OPTIONS??? (see configure.log for details): ------------------------------------------------------------------------------- Error running make on HYPRE: Could not execute "cd /d/dev01/qlu/Lib/petsc-3.4.2-32bit/externalpackages/hypre-2.9.1a/src && make install": Runaway process exceeded time limit of 2500s ******************************************************************************* I confirmed that I can cd to /d/dev01/qlu/Lib/petsc-3.4.2-32bit/externalpackages/hypre-2.9.1a/src. The error message mentioned the time limit of 2500s, my workstation is very slow for some reason and it may take several hours to configure/build PETSc/Hypre, I am not sure this can be the problem. ? Please see the attached PETSc and Hypre configure log files for details. ? Thanks for any suggestions, Qin?? ? ? On Thursday, January 9, 2014 4:13 PM, Satish Balay wrote: On Thu, 9 Jan 2014, Qin Lu wrote: > I am going to use this option. Just one more thing to confirm: I run "configure -hlep" and it says to use --download-hypre=yes (insted of 1), which one is correct? configure accepts both 0,1 or no,yes for such boolean flags Satish -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: configure.log.petsc_32bit URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: config.log.hypre URL: From balay at mcs.anl.gov Fri Jan 10 09:55:24 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Fri, 10 Jan 2014 09:55:24 -0600 Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: <1389367369.9153.YahooMailNeo@web160203.mail.bf1.yahoo.com> References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> <1389305350.31524.YahooMailNeo@web160202.mail.bf1.yahoo.com> <1389367369.9153.YahooMailNeo@web160203.mail.bf1.yahoo.com> Message-ID: On Fri, 10 Jan 2014, Qin Lu wrote: > Hello, > ? > Since my Linux workstation does not have internet access, I downloaded hypre-2.9.1a.tar.gz and used --download-hypre=/d/dev01/qlu/Lib/hypre-2.9.1a.tar.gz instead. The configure gave the following error: > ? > ******************************************************************************* > ???????? UNABLE to CONFIGURE with GIVEN OPTIONS??? (see configure.log for details): > ------------------------------------------------------------------------------- > Error running make on HYPRE: Could not execute "cd /d/dev01/qlu/Lib/petsc-3.4.2-32bit/externalpackages/hypre-2.9.1a/src && make install": > Runaway process exceeded time limit of 2500s > ******************************************************************************* > > I confirmed that I can cd to /d/dev01/qlu/Lib/petsc-3.4.2-32bit/externalpackages/hypre-2.9.1a/src. The error message mentioned the time limit of 2500s, my workstation is very slow for some reason and it may take several hours to configure/build PETSc/Hypre, I am not sure this can be the problem. > ? > Please see the attached PETSc and Hypre configure log files for details. Hm - you can try using --useThreads=0 - and see if the timeout gets disabled. Alternative is to increase the timeouts for all comands by doing something like the following: Satish ------ diff --git a/config/BuildSystem/script.py b/config/BuildSystem/script.py index 4208522..a2f65bb 100644 --- a/config/BuildSystem/script.py +++ b/config/BuildSystem/script.py @@ -244,7 +244,7 @@ class Script(logger.Logger): (self.output, self.error, self.status) = Script.runShellCommand(command, log, cwd) thread = InShell() thread.start() - thread.join(timeout) + thread.join(timeout*3) if thread.isAlive(): error = 'Runaway process exceeded time limit of '+str(timeout)+'s\n' log.write(error) balay at asterix /home/balay/petsc (master) From dharmareddy84 at gmail.com Fri Jan 10 13:19:17 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 10 Jan 2014 13:19:17 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: Message-ID: Hello, I was able to create the petsc section as per your advice. > DMPlexSetChart() > > DMPlexSetDof() and DMPlexSetFieldDof() > > DMPlexSetDof() and DMPlexSetFieldDof() I could program the code upto this step. ! Create Section call PetscSectionCreate(comm, section, ierr) ! This call sets the number of fields in the section. Default number of compents per field is 1 call PetscSectionSetNumFields(section, numField, ierr) ! Set the number of componets per field do fid=0,numField-1 call PetscSectionSetFieldComponents(section, fid, numComp(fid+1), ierr) end do ! Set the chart for section call DMPlexGetChart(meshDM, cellIdStart, cellIdEnd, ierr) call PetscSectionSetChart(section, cellIdStart, cellIdEnd, ierr) print*,'Sucessfully set chart',cellIdStart,cellIdEnd rgnLabel = "region" call DMPlexGetLabelIdIS(meshDM,rgnLabel,regionIS,ierr) call ISView(regionIS,PETSC_VIEWER_STDOUT_SELF,ierr) call ISGetIndicesF90(regionIS, regionId, ierr) print*, 'region', regionId do jc=1,size(regionId) ! Loop Over region1 rgnId = regionId(jc) call DMPlexGetStratumIS(meshDM, "region",rgnId, regionCellIS, ierr) !print*,'Number of cells in region',rgnId call ISGetSize(regionCellIS, numCell, ierr) !print*,'Number of cells in region',rgnId, 'is',numCell call ISGetIndicesF90(regionCellIS, regionCell, ierr) do ic=1,numCell ! Get the cells of this region and loop over Cells cellId = regionCell(ic) ! Get the dimension of the cell call DMPlexGetLabelValue(meshDM, "depth", cellId, cellDim, ierr) do fid=0,numField-1 ! Loop over fields ! Set field only if the field is defined for this region !print*, 'settinf Field for',cellId,cellDim,fid,rgnId,numDof(fid+1,cellDim+1) if(fieldInRegion(fid+1,rgnId)) then call PetscSectionSetFieldDof(section, cellId, fid, numDof(fid+1,cellDim+1), ierr) end if end do call PetscSectionSetDof(section, cellId, numDofTot(cellDim+1,rgnId), ierr) end do call ISRestoreIndicesF90(regionCellIS, regionCell, ierr) end do call ISRestoreIndicesF90(regionIS, regionId, ierr) Now I need to work on the code for BC. Can you help me with a bit more detail here. > > DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > DMPlexSetUp() > > DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() Thanks Reddy On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley wrote: > On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy > wrote: >> >> Hello, >> I am trying to use DMPlexCreateSection from fortran. I was >> able to solve a Poisson equation earlier using DMPlex for handling >> mesh data. >> >> Now i need to solve a system of equations: (poisson + continuity >> equations) >> >> - div (grad phi) = (C + n) --- (1) >> div (J ) = 0 --------------- (2) >> J = n grad(phi) >> ( C is constant) >> Simulation domain is defined as, rectangular regions 1 and 2 shown below. >> >> ------------- >> | 1 | >> ------------- >> | | >> | 2 | >> | | >> -------------- >> >> Now, equation 1 is defined in region 1 and 2 >> and equation 2 is defined only for region 2. >> >> How do i setup the section ? DMPlexCreateSection applies the given >> DOF layout per cell to all cells in the mesh. >> >> I am not sure if all the function calls inside >> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible >> from Fotran. > > > You don't want them anyway since they apply to the whole domain. The control > flow could be: > > DMPlexSetChart() > > DMPlexSetDof() and DMPlexSetFieldDof() > > DMPlexSetDof() and DMPlexSetFieldDof() > > DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > DMPlexSetUp() > > DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() > > We could try and package some of this up if it looks generic. > > Thanks, > > Matt > >> >> Thanks >> Reddy >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From baagaard at usgs.gov Fri Jan 10 14:37:48 2014 From: baagaard at usgs.gov (Brad Aagaard) Date: Fri, 10 Jan 2014 12:37:48 -0800 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: Message-ID: <52D05A1C.7000005@usgs.gov> On 01/10/2014 11:19 AM, Dharmendar Reddy wrote: > Hello, > I was able to create the petsc section as per your advice. >> DMPlexSetChart() >> >> DMPlexSetDof() and DMPlexSetFieldDof() >> >> DMPlexSetDof() and DMPlexSetFieldDof() > > I could program the code upto this step. > > ! Create Section > call PetscSectionCreate(comm, section, ierr) > ! This call sets the number of fields in the section. Default number > of compents per field is 1 > call PetscSectionSetNumFields(section, numField, ierr) > ! Set the number of componets per field > do fid=0,numField-1 > call PetscSectionSetFieldComponents(section, fid, numComp(fid+1), ierr) > end do > ! Set the chart for section > call DMPlexGetChart(meshDM, cellIdStart, cellIdEnd, ierr) > call PetscSectionSetChart(section, cellIdStart, cellIdEnd, ierr) > print*,'Sucessfully set chart',cellIdStart,cellIdEnd > rgnLabel = "region" > call DMPlexGetLabelIdIS(meshDM,rgnLabel,regionIS,ierr) > call ISView(regionIS,PETSC_VIEWER_STDOUT_SELF,ierr) > call ISGetIndicesF90(regionIS, regionId, ierr) > print*, 'region', regionId > do jc=1,size(regionId) ! Loop Over region1 > rgnId = regionId(jc) > call DMPlexGetStratumIS(meshDM, "region",rgnId, regionCellIS, ierr) > !print*,'Number of cells in region',rgnId > call ISGetSize(regionCellIS, numCell, ierr) > !print*,'Number of cells in region',rgnId, 'is',numCell > call ISGetIndicesF90(regionCellIS, regionCell, ierr) > do ic=1,numCell ! Get the cells of this region and loop over Cells > cellId = regionCell(ic) > ! Get the dimension of the cell > call DMPlexGetLabelValue(meshDM, "depth", cellId, cellDim, ierr) > do fid=0,numField-1 ! Loop over fields > ! Set field only if the field is defined for this region > !print*, 'settinf Field > for',cellId,cellDim,fid,rgnId,numDof(fid+1,cellDim+1) > if(fieldInRegion(fid+1,rgnId)) then > call PetscSectionSetFieldDof(section, cellId, fid, > numDof(fid+1,cellDim+1), ierr) > end if > end do > call PetscSectionSetDof(section, cellId, > numDofTot(cellDim+1,rgnId), ierr) > end do > call ISRestoreIndicesF90(regionCellIS, regionCell, ierr) > end do > call ISRestoreIndicesF90(regionIS, regionId, ierr) > > > Now I need to work on the code for BC. Can you help me with a bit more > detail here. >> >> DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() Use DMPlexSetConstraintDof() to set the number of DOF constrained at each point on the BC. DMPlexSetFieldConstraintDof() is used if you have multiple fields in a section. >> DMPlexSetUp() >> >> DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() Use DMPlexSetConstraintIndices() to set the indices of the DOF that are constrained. For example, one might constrain the DOF normal and/or tangential to a boundary in an elasticity problem. You first set the size for all the points, allocate via DMPlexSetUp, and then set the indices for the constrained DOF at each point. Regards, Brad > On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley wrote: >> On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy >> wrote: >>> >>> Hello, >>> I am trying to use DMPlexCreateSection from fortran. I was >>> able to solve a Poisson equation earlier using DMPlex for handling >>> mesh data. >>> >>> Now i need to solve a system of equations: (poisson + continuity >>> equations) >>> >>> - div (grad phi) = (C + n) --- (1) >>> div (J ) = 0 --------------- (2) >>> J = n grad(phi) >>> ( C is constant) >>> Simulation domain is defined as, rectangular regions 1 and 2 shown below. >>> >>> ------------- >>> | 1 | >>> ------------- >>> | | >>> | 2 | >>> | | >>> -------------- >>> >>> Now, equation 1 is defined in region 1 and 2 >>> and equation 2 is defined only for region 2. >>> >>> How do i setup the section ? DMPlexCreateSection applies the given >>> DOF layout per cell to all cells in the mesh. >>> >>> I am not sure if all the function calls inside >>> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible >>> from Fotran. >> >> >> You don't want them anyway since they apply to the whole domain. The control >> flow could be: >> >> DMPlexSetChart() >> >> DMPlexSetDof() and DMPlexSetFieldDof() >> >> DMPlexSetDof() and DMPlexSetFieldDof() >> >> DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() >> DMPlexSetUp() >> >> DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() >> >> We could try and package some of this up if it looks generic. >> >> Thanks, >> >> Matt >> >>> >>> Thanks >>> Reddy >>> >>> -- >>> ----------------------------------------------------- >>> Dharmendar Reddy Palle >> >> >> >> >> -- >> What most experimenters take for granted before they begin their experiments >> is infinitely more interesting than any results to which their experiments >> lead. >> -- Norbert Wiener > > > From dharmareddy84 at gmail.com Fri Jan 10 15:09:51 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 10 Jan 2014 15:09:51 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: <52D05A1C.7000005@usgs.gov> References: <52D05A1C.7000005@usgs.gov> Message-ID: Well, I was wondering, if i could use: DMPlexCreateSectionBCDof (1) and DMPlexCreateSectionBCIndicesAll (2) as is done in DMPLexCreateSection http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/plex.c.html#DMPlexCreateSection Since I am trying to setup section for a problem with different number of fields in different domains (regions). I redid the code for initial section creation. So the concern is if i am to setup BC's for the above scenario, is the code going to be different from the sequence of calls inside (1) and (2), once the initial section is defined. Thanks Reddy Thanks Reddy On Fri, Jan 10, 2014 at 2:37 PM, Brad Aagaard wrote: > On 01/10/2014 11:19 AM, Dharmendar Reddy wrote: >> >> Hello, >> I was able to create the petsc section as per your advice. >>> >>> DMPlexSetChart() >>> >>> DMPlexSetDof() and DMPlexSetFieldDof() >>> >>> DMPlexSetDof() and DMPlexSetFieldDof() >> >> >> I could program the code upto this step. >> >> ! Create Section >> call PetscSectionCreate(comm, section, ierr) >> ! This call sets the number of fields in the section. Default number >> of compents per field is 1 >> call PetscSectionSetNumFields(section, numField, ierr) >> ! Set the number of componets per field >> do fid=0,numField-1 >> call PetscSectionSetFieldComponents(section, fid, numComp(fid+1), >> ierr) >> end do >> ! Set the chart for section >> call DMPlexGetChart(meshDM, cellIdStart, cellIdEnd, ierr) >> call PetscSectionSetChart(section, cellIdStart, cellIdEnd, ierr) >> print*,'Sucessfully set chart',cellIdStart,cellIdEnd >> rgnLabel = "region" >> call DMPlexGetLabelIdIS(meshDM,rgnLabel,regionIS,ierr) >> call ISView(regionIS,PETSC_VIEWER_STDOUT_SELF,ierr) >> call ISGetIndicesF90(regionIS, regionId, ierr) >> print*, 'region', regionId >> do jc=1,size(regionId) ! Loop Over region1 >> rgnId = regionId(jc) >> call DMPlexGetStratumIS(meshDM, "region",rgnId, regionCellIS, ierr) >> !print*,'Number of cells in region',rgnId >> call ISGetSize(regionCellIS, numCell, ierr) >> !print*,'Number of cells in region',rgnId, 'is',numCell >> call ISGetIndicesF90(regionCellIS, regionCell, ierr) >> do ic=1,numCell ! Get the cells of this region and loop over Cells >> cellId = regionCell(ic) >> ! Get the dimension of the cell >> call DMPlexGetLabelValue(meshDM, "depth", cellId, cellDim, ierr) >> do fid=0,numField-1 ! Loop over fields >> ! Set field only if the field is defined for this region >> !print*, 'settinf Field >> for',cellId,cellDim,fid,rgnId,numDof(fid+1,cellDim+1) >> if(fieldInRegion(fid+1,rgnId)) then >> call PetscSectionSetFieldDof(section, cellId, fid, >> numDof(fid+1,cellDim+1), ierr) >> end if >> end do >> call PetscSectionSetDof(section, cellId, >> numDofTot(cellDim+1,rgnId), ierr) >> end do >> call ISRestoreIndicesF90(regionCellIS, regionCell, ierr) >> end do >> call ISRestoreIndicesF90(regionIS, regionId, ierr) >> >> >> Now I need to work on the code for BC. Can you help me with a bit more >> detail here. >>> >>> >>> DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > > > Use DMPlexSetConstraintDof() to set the number of DOF constrained at each > point on the BC. DMPlexSetFieldConstraintDof() is used if you have multiple > fields in a section. > > >>> DMPlexSetUp() >>> >>> DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() > > > Use DMPlexSetConstraintIndices() to set the indices of the DOF that are > constrained. > > For example, one might constrain the DOF normal and/or tangential to a > boundary in an elasticity problem. You first set the size for all the > points, allocate via DMPlexSetUp, and then set the indices for the > constrained DOF at each point. > > Regards, > Brad > > >> On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley wrote: >>> >>> On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy >>> >>> wrote: >>>> >>>> >>>> Hello, >>>> I am trying to use DMPlexCreateSection from fortran. I was >>>> able to solve a Poisson equation earlier using DMPlex for handling >>>> mesh data. >>>> >>>> Now i need to solve a system of equations: (poisson + continuity >>>> equations) >>>> >>>> - div (grad phi) = (C + n) --- (1) >>>> div (J ) = 0 --------------- (2) >>>> J = n grad(phi) >>>> ( C is constant) >>>> Simulation domain is defined as, rectangular regions 1 and 2 shown >>>> below. >>>> >>>> ------------- >>>> | 1 | >>>> ------------- >>>> | | >>>> | 2 | >>>> | | >>>> -------------- >>>> >>>> Now, equation 1 is defined in region 1 and 2 >>>> and equation 2 is defined only for region 2. >>>> >>>> How do i setup the section ? DMPlexCreateSection applies the given >>>> DOF layout per cell to all cells in the mesh. >>>> >>>> I am not sure if all the function calls inside >>>> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible >>>> from Fotran. >>> >>> >>> >>> You don't want them anyway since they apply to the whole domain. The >>> control >>> flow could be: >>> >>> DMPlexSetChart() >>> >>> DMPlexSetDof() and DMPlexSetFieldDof() >>> >>> DMPlexSetDof() and DMPlexSetFieldDof() >>> >>> DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() >>> DMPlexSetUp() >>> >>> DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() >>> >>> We could try and package some of this up if it looks generic. >>> >>> Thanks, >>> >>> Matt >>> >>>> >>>> Thanks >>>> Reddy >>>> >>>> -- >>>> ----------------------------------------------------- >>>> Dharmendar Reddy Palle >>> >>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments >>> is infinitely more interesting than any results to which their >>> experiments >>> lead. >>> -- Norbert Wiener >> >> >> >> > -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From dharmareddy84 at gmail.com Fri Jan 10 15:44:40 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 10 Jan 2014 15:44:40 -0600 Subject: [petsc-users] DMPlexCreateGmsh Message-ID: Hello, I have a question and feature request regarding DMPlexCreateGmsh. Gmsh, mesh format outputs, physical regions in the mesh as For example in the a particular 2 d mesh with eight physical regions it may look like the one below $PhysicalNames 8 1 1 "RegionName1" 1 2 "RegionName2" 1 3 "RegionName3" 2 4 "RegionName4" 2 5 "RegionName5" 2 6 "RegionName6" 2 7 "RegionName7" 2 8 "RegionName8" $EndPhysicalNames It would be nice to have the DMPLexCreateGmsh process this information. The first number in each row of name is the topological dimension (tdim), If the code can group all the regions with dimension < mesh dimension (meshDim) as "Boundary" and all regions with dimension = meshDimension as "Region" Gmsh outputs (if requested) the lower dimension cells in regions with tdim < meshDim. If interpolate mesh is enabled, i would like to have cells of boundary region, which in the above example will be lines and points, included in the boundary strata with global numbering for the facets. This ways the total number of Cells in the mesh will be : NumNodes + NumLines+ NumTriangles or NumNodes+ NumTriangles (if interpolate is off) In the Current implementation, correct me if i am wrong, I see the the total number of cells = numNodes + (some Lines which are elements of the lower dimensional regions) + numTriangles Thanks Reddy -- From lu_qin_2000 at yahoo.com Fri Jan 10 17:27:23 2014 From: lu_qin_2000 at yahoo.com (Qin Lu) Date: Fri, 10 Jan 2014 15:27:23 -0800 (PST) Subject: [petsc-users] Building Linux 32-bit PETSc lib In-Reply-To: References: <1389216092.56701.YahooMailNeo@web160203.mail.bf1.yahoo.com> <0FE1269F-5AD6-47D2-967C-A7846490B16B@mcs.anl.gov> <1389281100.74642.YahooMailNeo@web160203.mail.bf1.yahoo.com> <1389289111.35548.YahooMailNeo@web160201.mail.bf1.yahoo.com> <1389301500.68564.YahooMailNeo@web160205.mail.bf1.yahoo.com> <1389303161.26212.YahooMailNeo@web160204.mail.bf1.yahoo.com> <1389305350.31524.YahooMailNeo@web160202.mail.bf1.yahoo.com> <1389367369.9153.YahooMailNeo@web160203.mail.bf1.yahoo.com> Message-ID: <1389396443.78641.YahooMailNeo@web160203.mail.bf1.yahoo.com> --useThreads=0 resolved the problem. Many thanks! ? Qin On Friday, January 10, 2014 9:55 AM, Satish Balay wrote: On Fri, 10 Jan 2014, Qin Lu wrote: > Hello, > ? > Since my Linux workstation does not have internet access, I downloaded hypre-2.9.1a.tar.gz and used --download-hypre=/d/dev01/qlu/Lib/hypre-2.9.1a.tar.gz instead. The configure gave the following error: > ? > ******************************************************************************* > ???????? UNABLE to CONFIGURE with GIVEN OPTIONS??? (see configure.log for details): > ------------------------------------------------------------------------------- > Error running make on HYPRE: Could not execute "cd /d/dev01/qlu/Lib/petsc-3.4.2-32bit/externalpackages/hypre-2.9.1a/src && make install": > Runaway process exceeded time limit of 2500s > ******************************************************************************* > > I confirmed that I can cd to /d/dev01/qlu/Lib/petsc-3.4.2-32bit/externalpackages/hypre-2.9.1a/src. The error message mentioned the time limit of 2500s, my workstation is very slow for some reason and it may take several hours to configure/build PETSc/Hypre, I am not sure this can be the problem. > ? > Please see the attached PETSc and Hypre configure log files for details. Hm - you can try using --useThreads=0 - and see if the timeout gets disabled. Alternative is to increase the timeouts for all comands by doing something like the following: Satish ------ diff --git a/config/BuildSystem/script.py b/config/BuildSystem/script.py index 4208522..a2f65bb 100644 --- a/config/BuildSystem/script.py +++ b/config/BuildSystem/script.py @@ -244,7 +244,7 @@ class Script(logger.Logger): ? ? ? ? ? ? (self.output, self.error, self.status) = Script.runShellCommand(command, log, cwd) ? ? ? ? thread = InShell() ? ? ? ? thread.start() -? ? ? ? thread.join(timeout) +? ? ? ? thread.join(timeout*3) ? ? ? ? if thread.isAlive(): ? ? ? ? ? error = 'Runaway process exceeded time limit of '+str(timeout)+'s\n' ? ? ? ? ? log.write(error) balay at asterix /home/balay/petsc (master) -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Jan 10 19:11:19 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 10 Jan 2014 19:11:19 -0600 Subject: [petsc-users] query DMPlexCreateSection In-Reply-To: References: <52D05A1C.7000005@usgs.gov> Message-ID: On Fri, Jan 10, 2014 at 3:09 PM, Dharmendar Reddy wrote: > Well, I was wondering, if i could use: > > DMPlexCreateSectionBCDof (1) and DMPlexCreateSectionBCIndicesAll (2) > I would just do it by hand first, and then maybe we can abstract it. Matt > as is done in DMPLexCreateSection > > http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/plex.c.html#DMPlexCreateSection > > Since I am trying to setup section for a problem with different number > of fields in different domains (regions). I redid the code for initial > section creation. > > So the concern is if i am to setup BC's for the above scenario, is > the code going to be different from the sequence of calls inside (1) > and (2), once the initial section is defined. > > Thanks > Reddy > > Thanks > Reddy > > On Fri, Jan 10, 2014 at 2:37 PM, Brad Aagaard wrote: > > On 01/10/2014 11:19 AM, Dharmendar Reddy wrote: > >> > >> Hello, > >> I was able to create the petsc section as per your advice. > >>> > >>> DMPlexSetChart() > >>> > >>> DMPlexSetDof() and DMPlexSetFieldDof() > >>> > >>> DMPlexSetDof() and DMPlexSetFieldDof() > >> > >> > >> I could program the code upto this step. > >> > >> ! Create Section > >> call PetscSectionCreate(comm, section, ierr) > >> ! This call sets the number of fields in the section. Default number > >> of compents per field is 1 > >> call PetscSectionSetNumFields(section, numField, ierr) > >> ! Set the number of componets per field > >> do fid=0,numField-1 > >> call PetscSectionSetFieldComponents(section, fid, numComp(fid+1), > >> ierr) > >> end do > >> ! Set the chart for section > >> call DMPlexGetChart(meshDM, cellIdStart, cellIdEnd, ierr) > >> call PetscSectionSetChart(section, cellIdStart, cellIdEnd, ierr) > >> print*,'Sucessfully set chart',cellIdStart,cellIdEnd > >> rgnLabel = "region" > >> call DMPlexGetLabelIdIS(meshDM,rgnLabel,regionIS,ierr) > >> call ISView(regionIS,PETSC_VIEWER_STDOUT_SELF,ierr) > >> call ISGetIndicesF90(regionIS, regionId, ierr) > >> print*, 'region', regionId > >> do jc=1,size(regionId) ! Loop Over region1 > >> rgnId = regionId(jc) > >> call DMPlexGetStratumIS(meshDM, "region",rgnId, regionCellIS, ierr) > >> !print*,'Number of cells in region',rgnId > >> call ISGetSize(regionCellIS, numCell, ierr) > >> !print*,'Number of cells in region',rgnId, 'is',numCell > >> call ISGetIndicesF90(regionCellIS, regionCell, ierr) > >> do ic=1,numCell ! Get the cells of this region and loop over Cells > >> cellId = regionCell(ic) > >> ! Get the dimension of the cell > >> call DMPlexGetLabelValue(meshDM, "depth", cellId, cellDim, ierr) > >> do fid=0,numField-1 ! Loop over fields > >> ! Set field only if the field is defined for this region > >> !print*, 'settinf Field > >> for',cellId,cellDim,fid,rgnId,numDof(fid+1,cellDim+1) > >> if(fieldInRegion(fid+1,rgnId)) then > >> call PetscSectionSetFieldDof(section, cellId, fid, > >> numDof(fid+1,cellDim+1), ierr) > >> end if > >> end do > >> call PetscSectionSetDof(section, cellId, > >> numDofTot(cellDim+1,rgnId), ierr) > >> end do > >> call ISRestoreIndicesF90(regionCellIS, regionCell, ierr) > >> end do > >> call ISRestoreIndicesF90(regionIS, regionId, ierr) > >> > >> > >> Now I need to work on the code for BC. Can you help me with a bit more > >> detail here. > >>> > >>> > >>> DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > > > > > > Use DMPlexSetConstraintDof() to set the number of DOF constrained at each > > point on the BC. DMPlexSetFieldConstraintDof() is used if you have > multiple > > fields in a section. > > > > > >>> DMPlexSetUp() > >>> > >>> DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() > > > > > > Use DMPlexSetConstraintIndices() to set the indices of the DOF that are > > constrained. > > > > For example, one might constrain the DOF normal and/or tangential to a > > boundary in an elasticity problem. You first set the size for all the > > points, allocate via DMPlexSetUp, and then set the indices for the > > constrained DOF at each point. > > > > Regards, > > Brad > > > > > >> On Thu, Jan 2, 2014 at 9:56 AM, Matthew Knepley > wrote: > >>> > >>> On Thu, Jan 2, 2014 at 4:11 AM, Dharmendar Reddy > >>> > >>> wrote: > >>>> > >>>> > >>>> Hello, > >>>> I am trying to use DMPlexCreateSection from fortran. I was > >>>> able to solve a Poisson equation earlier using DMPlex for handling > >>>> mesh data. > >>>> > >>>> Now i need to solve a system of equations: (poisson + continuity > >>>> equations) > >>>> > >>>> - div (grad phi) = (C + n) --- (1) > >>>> div (J ) = 0 --------------- (2) > >>>> J = n grad(phi) > >>>> ( C is constant) > >>>> Simulation domain is defined as, rectangular regions 1 and 2 shown > >>>> below. > >>>> > >>>> ------------- > >>>> | 1 | > >>>> ------------- > >>>> | | > >>>> | 2 | > >>>> | | > >>>> -------------- > >>>> > >>>> Now, equation 1 is defined in region 1 and 2 > >>>> and equation 2 is defined only for region 2. > >>>> > >>>> How do i setup the section ? DMPlexCreateSection applies the given > >>>> DOF layout per cell to all cells in the mesh. > >>>> > >>>> I am not sure if all the function calls inside > >>>> DMPlexCreateSectionIntial and DMPlexCreateSectionBCDof are accessible > >>>> from Fotran. > >>> > >>> > >>> > >>> You don't want them anyway since they apply to the whole domain. The > >>> control > >>> flow could be: > >>> > >>> DMPlexSetChart() > >>> > >>> DMPlexSetDof() and DMPlexSetFieldDof() > >>> > >>> DMPlexSetDof() and DMPlexSetFieldDof() > >>> > >>> DMPlexSetConstraintDof() and DMPlexSetFieldConstraintDof() > >>> DMPlexSetUp() > >>> > >>> DMPlexSetConstraintIndices() and DMPlexSetFieldConstraintIndices() > >>> > >>> We could try and package some of this up if it looks generic. > >>> > >>> Thanks, > >>> > >>> Matt > >>> > >>>> > >>>> Thanks > >>>> Reddy > >>>> > >>>> -- > >>>> ----------------------------------------------------- > >>>> Dharmendar Reddy Palle > >>> > >>> > >>> > >>> > >>> > >>> -- > >>> What most experimenters take for granted before they begin their > >>> experiments > >>> is infinitely more interesting than any results to which their > >>> experiments > >>> lead. > >>> -- Norbert Wiener > >> > >> > >> > >> > > > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Jan 10 19:14:43 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 10 Jan 2014 19:14:43 -0600 Subject: [petsc-users] DMPlexCreateGmsh In-Reply-To: References: Message-ID: On Fri, Jan 10, 2014 at 3:44 PM, Dharmendar Reddy wrote: > Hello, > I have a question and feature request regarding DMPlexCreateGmsh. > > Gmsh, mesh format outputs, physical regions in the mesh as > For example in the a particular 2 d mesh with eight physical regions > it may look like the one below > $PhysicalNames > 8 > 1 1 "RegionName1" > 1 2 "RegionName2" > 1 3 "RegionName3" > 2 4 "RegionName4" > 2 5 "RegionName5" > 2 6 "RegionName6" > 2 7 "RegionName7" > 2 8 "RegionName8" > $EndPhysicalNames > > It would be nice to have the DMPLexCreateGmsh process this information. > > The first number in each row of name is the topological dimension (tdim), > > If the code can group all the regions with dimension < mesh dimension > (meshDim) as "Boundary" and all regions with dimension = > meshDimension as "Region" > > Gmsh outputs (if requested) the lower dimension cells in regions with > tdim < meshDim. If interpolate mesh is enabled, i would like to have > cells of boundary region, which in the above example will be lines and > points, included in the boundary strata with global numbering for the > facets. > I really hate GMsh right now. The format is a complete cluster of idiocy. They allow outputting facets as separate lower-dimensional cells, unconnected to the original cell, so we would have to initiate a search for every insertion. Not to mention that sizes are not declared up front so that we have to run through the file in multiple passes. I really really hate these guys. Is there an overwhelming reason to waste my time messing around with a format designed by the mentally infirm? I am willing to listen to reason, but reading Gmsh files would make anyone unreasonably angry. Matt > This ways the total number of Cells in the mesh will be : NumNodes + > NumLines+ NumTriangles or NumNodes+ NumTriangles (if interpolate is > off) > > > In the Current implementation, correct me if i am wrong, I see the the > total number of cells = numNodes + (some Lines which are elements of > the lower dimensional regions) + numTriangles > > > Thanks > Reddy > > > -- > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Fri Jan 10 20:38:46 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 10 Jan 2014 20:38:46 -0600 Subject: [petsc-users] help with vecSetValuesSectionF90 Message-ID: Hello, I am getting an error using VecSetValuesSectionF90. I had this working before, i do not know whats wrong now. The call is deep inside my code so i am not able to create a test case. I am using: Petsc Development GIT revision: b45093d79c132b908a729253318f899155602205 GIT Date: 2013-11-11 1 6:19:16 -0600 Hope the code chunk below, can help identify the issue. The following is the sequence of calls: DM :: dm Vec :: localX InsertMode :: mode PetscErrorCode :: ierr ! PetscSection :: section ! defualt section PetscScalar,allocatable :: values(:) ! size numDofPerPoint integer :: vertexId integer :: vertexIdStart, vertexIdEnd integer :: vertextdim integer :: numConstrainedDOF integer :: rgnId,bcId,offset integer :: IdStart,IdEnd integer :: fc vertextdim = 0 call DMPlexGetDepthStratum(dm,vertextdim,vertexIdStart,vertexIdEnd, ierr) call DMGetDefaultSection(dm, section, ierr) call PetscSectionView(section,PETSC_VIEWER_STDOUT_SELF,ierr) allocate(values(this%dofMap%numFieldComp)) print*, 'size of values is',this%dofMap%numFieldComp do vertexId=vertexIdStart,vertexIdEnd-1 call PetscSectionGetConstraintDof(section,vertexId,numConstrainedDOF,ierr) print*,'vertex dof',vertexId,numConstrainedDOF if(numConstrainedDOF > 0) then call DMPlexGetLabelValue(dm,'Boundary',vertexId,rgnId, ierr) values = 0.0_WP offset = 0 do fc = 1,this%numField ! check if Field at vertextId is contained IdStart = offset + 1 IdEnd = offset + this%numComp(fc) !if(fieldIdisconstrained) then bcId = this%getBCId(fc,rgnId) values(IdStart:IdEnd) = this%BC(bcId)%getBC() !end if offset = offset + this%numComp(fc) end do print*,'Setting bc value',values(1),'at vertex',vertexId,rgnId call VecSetValuesSectionF90(localX, section, vertexId, values,Mode,ierr) end if end do deallocate(values) The three print statements above print the following lines. size of values is 1 vertex dof 600 1 Setting bc value -35.7688912272406 at vertex 600 1 So, i am passing the correct size array to VecSetValuesSectionF90. However, when i run the code through intel debugger, i get the following: size of values is 1 vertex dof 600 1 Setting bc value -35.7688912272406 at vertex 600 1 Program received signal SIGSEGV VecSetValuesSection (v=0x2bf5620, s=0x2b41a60, point=600, values=0x447e3d3b071996fc, mode=INSERT_BC_VALUES ) at /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 185 if (doBC) array[i] = values[i]; /* Constrained update */ (idb) print values[0] $1 = The value i passed from Fortran code is not missing. The relevant call trace is: (idb) bt #0 0x00002b477a299b2d in VecSetValuesSection (v=0x2bf5620, s=0x2b41a60, point=600, values=0x447e3d3b071996fc, mode =INSERT_BC_VALUES) at /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 #1 0x00002b477a29aead in vecsetvaluessectionf90_ (v=0x7fff16adce30, section=0x7fff16adc790, point=0x7fff16adc6f4, ptr=0x2b12740, mode=0x9aa990, __ierr=0x7fff16adce08) at /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/f90 -custom/zvsectionf90.c:17 Am i doing some thing wrong ? Thanks Reddy -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From knepley at gmail.com Fri Jan 10 20:56:07 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 10 Jan 2014 20:56:07 -0600 Subject: [petsc-users] help with vecSetValuesSectionF90 In-Reply-To: References: Message-ID: On Fri, Jan 10, 2014 at 8:38 PM, Dharmendar Reddy wrote: > Hello, > I am getting an error using VecSetValuesSectionF90. I had this > working before, i do not know whats wrong now. The call is deep inside > my code so i am not able to create a test case. > I believe this is our bug, from the name change. If you look in include/finclude/ftn-custom/petscvec.h90:43 you see that the function name is wrong. This causes the Fortran compiler to emit wrong code and never tell us about it. If you change the name here and recompile it should work. I will push this fix tomorrow. Thanks, Matt > I am using: Petsc Development GIT revision: > b45093d79c132b908a729253318f899155602205 GIT Date: 2013-11-11 1 > 6:19:16 -0600 > Hope the code chunk below, can help identify the issue. > > The following is the sequence of calls: > > DM :: dm > Vec :: localX > InsertMode :: mode > PetscErrorCode :: ierr > ! > PetscSection :: section ! defualt section > PetscScalar,allocatable :: values(:) ! size numDofPerPoint > integer :: vertexId > integer :: vertexIdStart, vertexIdEnd > integer :: vertextdim > integer :: numConstrainedDOF > integer :: rgnId,bcId,offset > integer :: IdStart,IdEnd > integer :: fc > vertextdim = 0 > call DMPlexGetDepthStratum(dm,vertextdim,vertexIdStart,vertexIdEnd, ierr) > call DMGetDefaultSection(dm, section, ierr) > call PetscSectionView(section,PETSC_VIEWER_STDOUT_SELF,ierr) > allocate(values(this%dofMap%numFieldComp)) > print*, 'size of values is',this%dofMap%numFieldComp > do vertexId=vertexIdStart,vertexIdEnd-1 > call > PetscSectionGetConstraintDof(section,vertexId,numConstrainedDOF,ierr) > print*,'vertex dof',vertexId,numConstrainedDOF > if(numConstrainedDOF > 0) then > call DMPlexGetLabelValue(dm,'Boundary',vertexId,rgnId, ierr) > values = 0.0_WP > offset = 0 > do fc = 1,this%numField > ! check if Field at vertextId is contained > IdStart = offset + 1 > IdEnd = offset + this%numComp(fc) > !if(fieldIdisconstrained) then > bcId = this%getBCId(fc,rgnId) > values(IdStart:IdEnd) = this%BC(bcId)%getBC() > !end if > offset = offset + this%numComp(fc) > end do > print*,'Setting bc value',values(1),'at vertex',vertexId,rgnId > call VecSetValuesSectionF90(localX, section, vertexId, > values,Mode,ierr) > end if > end do > deallocate(values) > > The three print statements above print the following lines. > > size of values is 1 > vertex dof 600 1 > Setting bc value -35.7688912272406 at vertex 600 1 > > So, i am passing the correct size array to VecSetValuesSectionF90. > However, when i run the code through intel debugger, i get the > following: > > size of values is 1 > vertex dof 600 1 > Setting bc value -35.7688912272406 at vertex 600 1 > Program received signal SIGSEGV > VecSetValuesSection (v=0x2bf5620, s=0x2b41a60, point=600, > values=0x447e3d3b071996fc, mode=INSERT_BC_VALUES > ) at /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 > 185 if (doBC) array[i] = values[i]; /* Constrained update > */ > (idb) print values[0] > $1 = > > > The value i passed from Fortran code is not missing. > > The relevant call trace is: > > (idb) bt > #0 0x00002b477a299b2d in VecSetValuesSection (v=0x2bf5620, > s=0x2b41a60, point=600, values=0x447e3d3b071996fc, mode > =INSERT_BC_VALUES) at > /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 > #1 0x00002b477a29aead in vecsetvaluessectionf90_ (v=0x7fff16adce30, > section=0x7fff16adc790, point=0x7fff16adc6f4, > ptr=0x2b12740, mode=0x9aa990, __ierr=0x7fff16adce08) at > /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/f90 > -custom/zvsectionf90.c:17 > > > Am i doing some thing wrong ? > > Thanks > Reddy > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Sat Jan 11 02:13:00 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Sat, 11 Jan 2014 02:13:00 -0600 Subject: [petsc-users] help with vecSetValuesSectionF90 In-Reply-To: References: Message-ID: Okay. Thanks. On Fri, Jan 10, 2014 at 8:56 PM, Matthew Knepley wrote: > On Fri, Jan 10, 2014 at 8:38 PM, Dharmendar Reddy > wrote: >> >> Hello, >> I am getting an error using VecSetValuesSectionF90. I had this >> working before, i do not know whats wrong now. The call is deep inside >> my code so i am not able to create a test case. > > > I believe this is our bug, from the name change. If you look in > > include/finclude/ftn-custom/petscvec.h90:43 > > you see that the function name is wrong. This causes the Fortran compiler to > emit wrong code and > never tell us about it. If you change the name here and recompile it should > work. I will push this fix > tomorrow. > > Thanks, > > Matt > >> >> I am using: Petsc Development GIT revision: >> b45093d79c132b908a729253318f899155602205 GIT Date: 2013-11-11 1 >> 6:19:16 -0600 >> Hope the code chunk below, can help identify the issue. >> >> The following is the sequence of calls: >> >> DM :: dm >> Vec :: localX >> InsertMode :: mode >> PetscErrorCode :: ierr >> ! >> PetscSection :: section ! defualt section >> PetscScalar,allocatable :: values(:) ! size numDofPerPoint >> integer :: vertexId >> integer :: vertexIdStart, vertexIdEnd >> integer :: vertextdim >> integer :: numConstrainedDOF >> integer :: rgnId,bcId,offset >> integer :: IdStart,IdEnd >> integer :: fc >> vertextdim = 0 >> call DMPlexGetDepthStratum(dm,vertextdim,vertexIdStart,vertexIdEnd, >> ierr) >> call DMGetDefaultSection(dm, section, ierr) >> call PetscSectionView(section,PETSC_VIEWER_STDOUT_SELF,ierr) >> allocate(values(this%dofMap%numFieldComp)) >> print*, 'size of values is',this%dofMap%numFieldComp >> do vertexId=vertexIdStart,vertexIdEnd-1 >> call >> PetscSectionGetConstraintDof(section,vertexId,numConstrainedDOF,ierr) >> print*,'vertex dof',vertexId,numConstrainedDOF >> if(numConstrainedDOF > 0) then >> call DMPlexGetLabelValue(dm,'Boundary',vertexId,rgnId, ierr) >> values = 0.0_WP >> offset = 0 >> do fc = 1,this%numField >> ! check if Field at vertextId is contained >> IdStart = offset + 1 >> IdEnd = offset + this%numComp(fc) >> !if(fieldIdisconstrained) then >> bcId = this%getBCId(fc,rgnId) >> values(IdStart:IdEnd) = this%BC(bcId)%getBC() >> !end if >> offset = offset + this%numComp(fc) >> end do >> print*,'Setting bc value',values(1),'at vertex',vertexId,rgnId >> call VecSetValuesSectionF90(localX, section, vertexId, >> values,Mode,ierr) >> end if >> end do >> deallocate(values) >> >> The three print statements above print the following lines. >> >> size of values is 1 >> vertex dof 600 1 >> Setting bc value -35.7688912272406 at vertex 600 >> 1 >> >> So, i am passing the correct size array to VecSetValuesSectionF90. >> However, when i run the code through intel debugger, i get the >> following: >> >> size of values is 1 >> vertex dof 600 1 >> Setting bc value -35.7688912272406 at vertex 600 >> 1 >> Program received signal SIGSEGV >> VecSetValuesSection (v=0x2bf5620, s=0x2b41a60, point=600, >> values=0x447e3d3b071996fc, mode=INSERT_BC_VALUES >> ) at >> /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 >> 185 if (doBC) array[i] = values[i]; /* Constrained update >> */ >> (idb) print values[0] >> $1 = >> >> >> The value i passed from Fortran code is not missing. >> >> The relevant call trace is: >> >> (idb) bt >> #0 0x00002b477a299b2d in VecSetValuesSection (v=0x2bf5620, >> s=0x2b41a60, point=600, values=0x447e3d3b071996fc, mode >> =INSERT_BC_VALUES) at >> /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 >> #1 0x00002b477a29aead in vecsetvaluessectionf90_ (v=0x7fff16adce30, >> section=0x7fff16adc790, point=0x7fff16adc6f4, >> ptr=0x2b12740, mode=0x9aa990, __ierr=0x7fff16adce08) at >> /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/f90 >> -custom/zvsectionf90.c:17 >> >> >> Am i doing some thing wrong ? >> >> Thanks >> Reddy >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> Graduate Student >> Microelectronics Research center, >> University of Texas at Austin, >> 10100 Burnet Road, Bldg. 160 >> MER 2.608F, TX 78758-4445 >> e-mail: dharmareddy84 at gmail.com >> Phone: +1-512-350-9082 >> United States of America. >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From knepley at gmail.com Sat Jan 11 08:54:11 2014 From: knepley at gmail.com (Matthew Knepley) Date: Sat, 11 Jan 2014 08:54:11 -0600 Subject: [petsc-users] help with vecSetValuesSectionF90 In-Reply-To: References: Message-ID: On Sat, Jan 11, 2014 at 2:13 AM, Dharmendar Reddy wrote: > Okay. Thanks. Pushed to next. Thanks, Matt > On Fri, Jan 10, 2014 at 8:56 PM, Matthew Knepley > wrote: > > On Fri, Jan 10, 2014 at 8:38 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > > wrote: > >> > >> Hello, > >> I am getting an error using VecSetValuesSectionF90. I had this > >> working before, i do not know whats wrong now. The call is deep inside > >> my code so i am not able to create a test case. > > > > > > I believe this is our bug, from the name change. If you look in > > > > include/finclude/ftn-custom/petscvec.h90:43 > > > > you see that the function name is wrong. This causes the Fortran > compiler to > > emit wrong code and > > never tell us about it. If you change the name here and recompile it > should > > work. I will push this fix > > tomorrow. > > > > Thanks, > > > > Matt > > > >> > >> I am using: Petsc Development GIT revision: > >> b45093d79c132b908a729253318f899155602205 GIT Date: 2013-11-11 1 > >> 6:19:16 -0600 > >> Hope the code chunk below, can help identify the issue. > >> > >> The following is the sequence of calls: > >> > >> DM :: dm > >> Vec :: localX > >> InsertMode :: mode > >> PetscErrorCode :: ierr > >> ! > >> PetscSection :: section ! defualt section > >> PetscScalar,allocatable :: values(:) ! size numDofPerPoint > >> integer :: vertexId > >> integer :: vertexIdStart, vertexIdEnd > >> integer :: vertextdim > >> integer :: numConstrainedDOF > >> integer :: rgnId,bcId,offset > >> integer :: IdStart,IdEnd > >> integer :: fc > >> vertextdim = 0 > >> call DMPlexGetDepthStratum(dm,vertextdim,vertexIdStart,vertexIdEnd, > >> ierr) > >> call DMGetDefaultSection(dm, section, ierr) > >> call PetscSectionView(section,PETSC_VIEWER_STDOUT_SELF,ierr) > >> allocate(values(this%dofMap%numFieldComp)) > >> print*, 'size of values is',this%dofMap%numFieldComp > >> do vertexId=vertexIdStart,vertexIdEnd-1 > >> call > >> PetscSectionGetConstraintDof(section,vertexId,numConstrainedDOF,ierr) > >> print*,'vertex dof',vertexId,numConstrainedDOF > >> if(numConstrainedDOF > 0) then > >> call DMPlexGetLabelValue(dm,'Boundary',vertexId,rgnId, ierr) > >> values = 0.0_WP > >> offset = 0 > >> do fc = 1,this%numField > >> ! check if Field at vertextId is contained > >> IdStart = offset + 1 > >> IdEnd = offset + this%numComp(fc) > >> !if(fieldIdisconstrained) then > >> bcId = this%getBCId(fc,rgnId) > >> values(IdStart:IdEnd) = this%BC(bcId)%getBC() > >> !end if > >> offset = offset + this%numComp(fc) > >> end do > >> print*,'Setting bc value',values(1),'at vertex',vertexId,rgnId > >> call VecSetValuesSectionF90(localX, section, vertexId, > >> values,Mode,ierr) > >> end if > >> end do > >> deallocate(values) > >> > >> The three print statements above print the following lines. > >> > >> size of values is 1 > >> vertex dof 600 1 > >> Setting bc value -35.7688912272406 at vertex 600 > >> 1 > >> > >> So, i am passing the correct size array to VecSetValuesSectionF90. > >> However, when i run the code through intel debugger, i get the > >> following: > >> > >> size of values is 1 > >> vertex dof 600 1 > >> Setting bc value -35.7688912272406 at vertex 600 > >> 1 > >> Program received signal SIGSEGV > >> VecSetValuesSection (v=0x2bf5620, s=0x2b41a60, point=600, > >> values=0x447e3d3b071996fc, mode=INSERT_BC_VALUES > >> ) at > >> /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 > >> 185 if (doBC) array[i] = values[i]; /* Constrained > update > >> */ > >> (idb) print values[0] > >> $1 = > >> > >> > >> The value i passed from Fortran code is not missing. > >> > >> The relevant call trace is: > >> > >> (idb) bt > >> #0 0x00002b477a299b2d in VecSetValuesSection (v=0x2bf5620, > >> s=0x2b41a60, point=600, values=0x447e3d3b071996fc, mode > >> =INSERT_BC_VALUES) at > >> /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/vsection.c:185 > >> #1 0x00002b477a29aead in vecsetvaluessectionf90_ (v=0x7fff16adce30, > >> section=0x7fff16adc790, point=0x7fff16adc6f4, > >> ptr=0x2b12740, mode=0x9aa990, __ierr=0x7fff16adce08) at > >> /home1/00924/Reddy135/LocalApps/petsc/src/vec/vec/utils/f90 > >> -custom/zvsectionf90.c:17 > >> > >> > >> Am i doing some thing wrong ? > >> > >> Thanks > >> Reddy > >> > >> -- > >> ----------------------------------------------------- > >> Dharmendar Reddy Palle > >> Graduate Student > >> Microelectronics Research center, > >> University of Texas at Austin, > >> 10100 Burnet Road, Bldg. 160 > >> MER 2.608F, TX 78758-4445 > >> e-mail: dharmareddy84 at gmail.com > >> Phone: +1-512-350-9082 > >> United States of America. > >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From charlesj at purdue.edu Sat Jan 11 11:40:34 2014 From: charlesj at purdue.edu (James A Charles) Date: Sat, 11 Jan 2014 12:40:34 -0500 (EST) Subject: [petsc-users] Slepc - Non Hermitian eigenvalue problem. In-Reply-To: <476362207.111672.1389461990704.JavaMail.root@mailhub050.itcs.purdue.edu> Message-ID: <26465182.111674.1389462033992.JavaMail.root@mailhub050.itcs.purdue.edu> Hello, I am trying to solve a non-Hermitian eigenvalue problem. Unless I'm mistaken, the eigenpairs that come out are not orthogonal. Is there an option to make them orthonormal? I just output the file to MATLAB format and do dot(V(:,1),V(:,2) and that does not come to 0. Am I missing something? Thanks, James From jroman at dsic.upv.es Sat Jan 11 12:02:37 2014 From: jroman at dsic.upv.es (Jose E. Roman) Date: Sat, 11 Jan 2014 19:02:37 +0100 Subject: [petsc-users] Slepc - Non Hermitian eigenvalue problem. In-Reply-To: <26465182.111674.1389462033992.JavaMail.root@mailhub050.itcs.purdue.edu> References: <26465182.111674.1389462033992.JavaMail.root@mailhub050.itcs.purdue.edu> Message-ID: <8B9ED475-FF83-436B-9B6E-1D0DA30ECE24@dsic.upv.es> El 11/01/2014, a las 18:40, James A Charles escribi?: > Hello, > > I am trying to solve a non-Hermitian eigenvalue problem. Unless I'm mistaken, the eigenpairs that come out are not orthogonal. Is there an option to make them orthonormal? I just output the file to MATLAB format and do dot(V(:,1),V(:,2) and that does not come to 0. > Am I missing something? > > > Thanks, > James Eigenvector are not mutually orthogonal in general. This is the case for Hermitian problems, but not in the non-Hermitian case. Schur vectors are always orthogonal, and these can be retrived with EPSGetInvariantSubspace(). Jose From g.gorman at imperial.ac.uk Sun Jan 12 19:37:34 2014 From: g.gorman at imperial.ac.uk (Gorman, Gerard J) Date: Mon, 13 Jan 2014 01:37:34 +0000 Subject: [petsc-users] DMPlexCreateGmsh In-Reply-To: References: Message-ID: Hi Matt First - really sorry for having inflicted this on you. I agree that there are many problems with the format and it?s not like the world needs a new file format. I only happened to use it for a case where there was an existing toolchain?which I?m now rewriting anyhow. What is your current least detested file format for FEM that plays nicely with DMPlex? Exodus II? Dharmendar - you might just want to write a simple translation script if you are locked into gmsh for some reason. It is also a pain that the format does not work with paraview and other common tools out of the box. Cheers Gerard On 11 Jan 2014, at 01:14, Matthew Knepley > wrote: On Fri, Jan 10, 2014 at 3:44 PM, Dharmendar Reddy > wrote: Hello, I have a question and feature request regarding DMPlexCreateGmsh. Gmsh, mesh format outputs, physical regions in the mesh as For example in the a particular 2 d mesh with eight physical regions it may look like the one below $PhysicalNames 8 1 1 "RegionName1" 1 2 "RegionName2" 1 3 "RegionName3" 2 4 "RegionName4" 2 5 "RegionName5" 2 6 "RegionName6" 2 7 "RegionName7" 2 8 "RegionName8" $EndPhysicalNames It would be nice to have the DMPLexCreateGmsh process this information. The first number in each row of name is the topological dimension (tdim), If the code can group all the regions with dimension < mesh dimension (meshDim) as "Boundary" and all regions with dimension = meshDimension as "Region" Gmsh outputs (if requested) the lower dimension cells in regions with tdim < meshDim. If interpolate mesh is enabled, i would like to have cells of boundary region, which in the above example will be lines and points, included in the boundary strata with global numbering for the facets. I really hate GMsh right now. The format is a complete cluster of idiocy. They allow outputting facets as separate lower-dimensional cells, unconnected to the original cell, so we would have to initiate a search for every insertion. Not to mention that sizes are not declared up front so that we have to run through the file in multiple passes. I really really hate these guys. Is there an overwhelming reason to waste my time messing around with a format designed by the mentally infirm? I am willing to listen to reason, but reading Gmsh files would make anyone unreasonably angry. Matt This ways the total number of Cells in the mesh will be : NumNodes + NumLines+ NumTriangles or NumNodes+ NumTriangles (if interpolate is off) In the Current implementation, correct me if i am wrong, I see the the total number of cells = numNodes + (some Lines which are elements of the lower dimensional regions) + numTriangles Thanks Reddy -- -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... 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URL: From dharmareddy84 at gmail.com Mon Jan 13 03:13:10 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 13 Jan 2014 03:13:10 -0600 Subject: [petsc-users] DMPlexMatSetClosure from Fortran Message-ID: Hello, I had my code working earlier, but after an update to Petsc Development GIT revision: b45093d79c132b908a729253318f8991 55602205 GIT Date: 2013-11-11 16:19:16 -0600 I am seeing errors related to some DMPlex routines. I fixed some based on earlier queries. Looks like i have found one more. I call DMPlexMatSetClosure by passing petsc_null_object for default and global sections. I do the same for DMPlexVecSetClosure. The residual part of the code which uses vecsetclosure works fine. But the Matsetclosure gives an error: due to finction call: call DMPlexMatSetClosure(dm, PETSC_NULL_OBJECT, PETSC_NULL_OBJECT,Jac, & cellId,this%Kelm_Array, ADD_VALUES,ierr) [0]PETSC ERROR: --------------------- Error Message ---------------------------- -------- [0]PETSC ERROR: Null argument, when expecting valid pointer! [0]PETSC ERROR: Null Object: Parameter # 2! [0]PETSC ERROR: ---------------------------------------------------------------- -------- [0]PETSC ERROR: Petsc Development GIT revision: b45093d79c132b908a729253318f8991 55602205 GIT Date: 2013-11-11 16:19:16 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ---------------------------------------------------------------- -------- [0]PETSC ERROR: PoisTest on a mpi_rScalar_Debug named login4.stampede.tacc.utexa s.edu by Reddy135 Mon Jan 13 02:54:22 2014 [0]PETSC ERROR: Libraries linked from /home1/00924/Reddy135/LocalApps/petsc/mpi_ rScalar_Debug/lib [0]PETSC ERROR: Configure run at Tue Nov 12 17:14:19 2013 [0]PETSC ERROR: Configure options --with-debugging=1 --with-petsc-arch=mpi_rScal ar_Debug --with-petsc-dir=/home1/00924/Reddy135/LocalApps/petsc --with-mpi-dir=/ opt/apps/intel13/mvapich2/1.9/ --with-scalar-type=real --with-blas-lapack-dir=/o pt/apps/intel/13/composer_xe_2013.2.146/mkl/lib/intel64/ --with-clanguage=c --do wnload-boost=1 --download-umfpack=1 --download-superlu_dist=1 --download-metis=1 --download-parmetis=1 --download-mumps=1 --download-scalapack=1 --download-blac s=1 --download-triangle=1 --download-ctetgen=1 [0]PETSC ERROR: ---------------------------------------------------------------- -------- [0]PETSC ERROR: DMPlexMatSetClosure() line 5640 in src/dm/impls/plex/plex.c Breakpoint 2.1, FEMLIB_M::computejacobian_vp (this=0x230c5b0, dm=36335024, x=464 92464, jac=46384176, pcmat=46384176, flag=0, ierr=85) at /home1/00924/Reddy135/p rojects/utgds/src/fem/VariationalProblemBoundProcedures.F90:779 779 call DMPlexMatSetClosure(dm, PETSC_NULL_OBJECT, PETSC_NULL_OBJECT,Ja c, & How do i fix this ? Reddy -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From parsani.matteo at gmail.com Mon Jan 13 08:52:51 2014 From: parsani.matteo at gmail.com (Matteo Parsani) Date: Mon, 13 Jan 2014 09:52:51 -0500 Subject: [petsc-users] Compare PETSc FD Jacobian with hand-coded Jacobian for parallel computations Message-ID: Dear All, I have been using -snes_check_jacobian -snes_check_jacobian_view petsc to verify the correctness of my hand-coded Jacobian. I would like to know if there is also a way to run such a command line options using at least 2 processors. Thank you in advance. Best Regards -- Matteo -------------- next part -------------- An HTML attachment was scrubbed... URL: From remi.lacroix at inria.fr Mon Jan 13 09:47:33 2014 From: remi.lacroix at inria.fr (=?ISO-8859-1?Q?R=E9mi_Lacroix?=) Date: Mon, 13 Jan 2014 16:47:33 +0100 Subject: [petsc-users] Equivalent of VecScatter for index sets Message-ID: <52D40A95.1080206@inria.fr> Hello, I would like to permute an index set with another index set, just like you can do for vectors using VecScatter. I have two index sets IS1 and IS2 which share the same size but have different parallel layouts. I often need to permute vectors/matrices using those two index sets (as in first permute with IS1 then permute the result with IS2). Since I don't use the intermediate result, I would like to permute IS1 with IS2 to get a new index set so that I can permute directly my vectors/matrices with it. Is that possible using Petsc? I'm not sure I am clear so feel free to ask for clarifications if need be. Best regards, -- R?mi Lacroix ?quipe ALPINES Inria Paris-Rocquencourt / Laboratoire Jacques Louis Lions, UPMC From jedbrown at mcs.anl.gov Mon Jan 13 09:12:25 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Mon, 13 Jan 2014 10:12:25 -0500 Subject: [petsc-users] DMPlexMatSetClosure from Fortran In-Reply-To: References: Message-ID: <87txd7dig6.fsf@jedbrown.org> Dharmendar Reddy writes: > Hello, > I had my code working earlier, but after an update to > Petsc Development GIT revision: b45093d79c132b908a729253318f8991 > 55602205 GIT Date: 2013-11-11 16:19:16 -0600 > > I am seeing errors related to some DMPlex routines. I fixed some based > on earlier queries. Looks like i have found one more. I pushed a commit to 'next'. Please pull and let me know if it works for you. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Mon Jan 13 12:00:46 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 13 Jan 2014 12:00:46 -0600 Subject: [petsc-users] Equivalent of VecScatter for index sets In-Reply-To: <52D40A95.1080206@inria.fr> References: <52D40A95.1080206@inria.fr> Message-ID: On Mon, Jan 13, 2014 at 9:47 AM, R?mi Lacroix wrote: > Hello, > > I would like to permute an index set with another index set, just like you > can do for vectors using VecScatter. > > I have two index sets IS1 and IS2 which share the same size but have > different parallel layouts. I often need to permute vectors/matrices using > those two index sets (as in first permute with IS1 then permute the result > with IS2). Since I don't use the intermediate result, I would like to > permute IS1 with IS2 to get a new index set so that I can permute directly > my vectors/matrices with it. Is that possible using Petsc? > We do not have this particular composition in our interface. However, you could accomplish this using PetscSF. Thanks, Matt > I'm not sure I am clear so feel free to ask for clarifications if need be. > > Best regards, > > -- > R?mi Lacroix > ?quipe ALPINES > Inria Paris-Rocquencourt / Laboratoire Jacques Louis Lions, UPMC > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Mon Jan 13 12:32:59 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 13 Jan 2014 12:32:59 -0600 Subject: [petsc-users] DMPlexMatSetClosure from Fortran In-Reply-To: <87txd7dig6.fsf@jedbrown.org> References: <87txd7dig6.fsf@jedbrown.org> Message-ID: Hello Jed, I see that plex.c has the following lines in the function DMPLexMatSetClosure: 5640 PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 5641 PetscValidHeaderSpecific(globalSection, PETSC_SECTION_CLASSID, 3); the petsc code i have is at : v3.4.3-2568-gb45093d Does the fix you pushed takes care of above calls, even if i pass null object ? I do not see a code related to retrieving the defualt and default globalsections when a null is passed to DMPlexMAtSetClosure. Thanks Reddy On Mon, Jan 13, 2014 at 9:12 AM, Jed Brown wrote: > Dharmendar Reddy writes: > >> Hello, >> I had my code working earlier, but after an update to >> Petsc Development GIT revision: b45093d79c132b908a729253318f8991 >> 55602205 GIT Date: 2013-11-11 16:19:16 -0600 >> >> I am seeing errors related to some DMPlex routines. I fixed some based >> on earlier queries. Looks like i have found one more. > > I pushed a commit to 'next'. Please pull and let me know if it works for you. -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From remi.lacroix at inria.fr Mon Jan 13 14:27:35 2014 From: remi.lacroix at inria.fr (=?ISO-8859-1?Q?R=E9mi_Lacroix?=) Date: Mon, 13 Jan 2014 21:27:35 +0100 Subject: [petsc-users] Equivalent of VecScatter for index sets In-Reply-To: References: <52D40A95.1080206@inria.fr> Message-ID: <52D44C37.8020704@inria.fr> Le 13/01/2014 19:00, Matthew Knepley a ?crit : > On Mon, Jan 13, 2014 at 9:47 AM, R?mi Lacroix > wrote: > > Hello, > > I would like to permute an index set with another index set, just > like you can do for vectors using VecScatter. > > I have two index sets IS1 and IS2 which share the same size but > have different parallel layouts. I often need to permute > vectors/matrices using those two index sets (as in first permute > with IS1 then permute the result with IS2). Since I don't use the > intermediate result, I would like to permute IS1 with IS2 to get a > new index set so that I can permute directly my vectors/matrices > with it. Is that possible using Petsc? > > > We do not have this particular composition in our interface. However, > you could accomplish this using PetscSF. > > Thanks, > > Matt Thanks for the quick answer. So basically I need to have a look at the underlying mechanism of VecScatter and implement something similar for IS. How complex would it be in practice? R?mi -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Jan 13 15:15:13 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 13 Jan 2014 15:15:13 -0600 Subject: [petsc-users] Equivalent of VecScatter for index sets In-Reply-To: <52D44C37.8020704@inria.fr> References: <52D40A95.1080206@inria.fr> <52D44C37.8020704@inria.fr> Message-ID: On Mon, Jan 13, 2014 at 2:27 PM, R?mi Lacroix wrote: > Le 13/01/2014 19:00, Matthew Knepley a ?crit : > > On Mon, Jan 13, 2014 at 9:47 AM, R?mi Lacroix wrote: > >> Hello, >> >> I would like to permute an index set with another index set, just like >> you can do for vectors using VecScatter. >> >> I have two index sets IS1 and IS2 which share the same size but have >> different parallel layouts. I often need to permute vectors/matrices using >> those two index sets (as in first permute with IS1 then permute the result >> with IS2). Since I don't use the intermediate result, I would like to >> permute IS1 with IS2 to get a new index set so that I can permute directly >> my vectors/matrices with it. Is that possible using Petsc? >> > > We do not have this particular composition in our interface. However, > you could accomplish this using PetscSF. > > Thanks, > > Matt > > > Thanks for the quick answer. > > So basically I need to have a look at the underlying mechanism of > VecScatter and implement something similar for IS. How complex would it be > in practice? > Using the PetscSF interface instead of VecScatter should not be too hard. Matt > > R?mi > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Mon Jan 13 16:11:18 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 13 Jan 2014 16:11:18 -0600 Subject: [petsc-users] Field wise residual norm Message-ID: Hello, Is there a petsc function which can help accomplish the following: I am solving a coupled system of equations: F1(x1,x2,x3) = 0 F2(x1,x2,x3) = 0 F3(x1,x2,x3) = 0 I am using DMPlex to handle to mesh data. I would like to compute the norm of residual of each function. I assemble the function element wise. I am looking for some interface like, ComputNorm(dm, F, fieldIndex). Thanks Reddy From knepley at gmail.com Mon Jan 13 16:15:43 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 13 Jan 2014 16:15:43 -0600 Subject: [petsc-users] Field wise residual norm In-Reply-To: References: Message-ID: On Mon, Jan 13, 2014 at 4:11 PM, Dharmendar Reddy wrote: > Hello, > Is there a petsc function which can help accomplish the following: > I am solving a coupled system of equations: > > F1(x1,x2,x3) = 0 > > F2(x1,x2,x3) = 0 > > F3(x1,x2,x3) = 0 > > > I am using DMPlex to handle to mesh data. I would like to compute the > norm of residual of each function. > > I assemble the function element wise. I am looking for some interface like, > ComputNorm(dm, F, fieldIndex). > Our thinking is generally that you would use DMCreateSubDM() and then use VecScatterCreate() with the IS it returns. This will map F into one of the F1/F2/F3. Does this make sense? Matt > Thanks > Reddy > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Mon Jan 13 16:53:55 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 13 Jan 2014 16:53:55 -0600 Subject: [petsc-users] Field wise residual norm In-Reply-To: References: Message-ID: I may need to read more about those functions to see how i can get the norms. But a quick look seem to suggest me that i will need lesser function calls than what i am thinking of doing right now. This is how my approach...Am i doing it right ? subroutine computeResidualNorm(meshDM,F,fieldId,fNorm) implicit none #include "finclude/petsc.h90" ! IO Variables DM, intent(inout) :: meshDM Vec, intent(inout) :: F integer, intent(in ) :: fieldId real(WP), intent(inout) :: fNorm ! Local Variables PetscErrorCode :: ierr PetscSection :: Section PetscScalar, pointer :: FArray(:) Vec :: gVec, lVec PetscScalar, pointer :: lArray(:) integer :: numFieldDof,offset,dofId integer :: CellId,CellIdStart,CellIdEnd PetscScalar :: zero zero = 0.0_WP call DMGetGlobalVector(meshDM, gVec, ierr) call DMGetLocalVector(meshDM, lVec, ierr) call Vecset(lVec, zero, ierr) ! Get acess to default section call DMGetDefaultSection(meshDM,section,ierr) ! Get chart call PetscSectionGetChart(section,cellIdstart,CellIdEnd,ierr) call vecGetArrayF90(F, FArray, ierr) call VecGetArrayF90(lVec, lArray, ierr) do cellId=cellIdstart,cellIdEnd-1 call PetscSectionGetFieldDof(section,CellId,fieldId,numFieldDof,ierr) if(numFieldDof > 0) then call PetscSectionGetFieldOffset(section,cellId,fieldId,offset,ierr) do dofId=0,numFieldDof-1 ic = offset+dofId lArray(ic) = FArray(ic) end do end if end do call VecRestoreArrayF90(lVec, lArray, ierr) call vecRestoreArrayF90(F, Farray,ierr) call DMLocalToGlobalBegin(meshDM, lVec, INSERT_VALUES, gVec, ierr) call DMLocalToGlobalEnd(meshDM, lVec, INSERT_VALUES, gVec, ierr) call DMRestoreLocalVector(meshDM, lVec, ierr) call VecNorm( gVec, NORM_2, fNorm, ierr) call DMRestoreGlobalVector(meshDM, gVec, ierr) end subroutine computeResidualNorm On Mon, Jan 13, 2014 at 4:15 PM, Matthew Knepley wrote: > On Mon, Jan 13, 2014 at 4:11 PM, Dharmendar Reddy > wrote: >> >> Hello, >> Is there a petsc function which can help accomplish the following: >> I am solving a coupled system of equations: >> >> F1(x1,x2,x3) = 0 >> >> F2(x1,x2,x3) = 0 >> >> F3(x1,x2,x3) = 0 >> >> >> I am using DMPlex to handle to mesh data. I would like to compute the >> norm of residual of each function. >> >> I assemble the function element wise. I am looking for some interface >> like, >> ComputNorm(dm, F, fieldIndex). > > > Our thinking is generally that you would use > > DMCreateSubDM() > > and then use VecScatterCreate() with the IS it returns. This will map F into > one of the F1/F2/F3. > > Does this make sense? > > Matt > >> >> Thanks >> Reddy > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From dharmareddy84 at gmail.com Mon Jan 13 17:33:55 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 13 Jan 2014 17:33:55 -0600 Subject: [petsc-users] Field wise residual norm In-Reply-To: References: Message-ID: Hello, Is the following code on the lines of the approach you suggested: How do i handle the fortran call to DMCreateFieldIS where i am not interested in fieldNames and numFields as output. Do i pass PETSC_NULL_OBJECT ? subroutine computeResidualNormV2(meshDM,F,fieldId,fNorm) implicit none #include "finclude/petsc.h90" ! IO Variables DM, intent(inout) :: meshDM Vec, intent(inout) :: F integer, intent(in ) :: fieldId real(WP), intent(inout) :: fNorm ! Local Variables PetscErrorCode :: ierr integer :: numField IS :: subfieldIS DM :: subDM character(len=50), pointer :: fieldName(:) Is, pointer :: fieldIS(:) VecScatter :: vscat call DMCreateSubDM(meshDM,1, fieldId, subfieldIS,subdm, ierr) call DMCreateFieldIS(meshDM, numField, fieldName, fieldIS, ierr) call DMGetGlobalVector(subDM, gVecsubField, ierr) call VecScatterCreate(F,fieldIS(fieldId),gVecsubField,subfieldIS,vscat,ierr) call VecScatterBegin(vscat, F, gVecsubField, INSET_VALUES, SCATTER_FORWARD, ierr) call VecScatterEnd(vscat, F, gVecsubField, INSET_VALUES, SCATTER_FORWARD, ierr) call VecNorm( gVecsubField, NORM_2, fNorm, ierr) call DMRestoreGlobalVector(subDM, gVecsubField, ierr) end subroutine computeResidualNormV2 On Mon, Jan 13, 2014 at 4:53 PM, Dharmendar Reddy wrote: > I may need to read more about those functions to see how i can get the > norms. But a quick look seem to suggest me that i will need lesser > function calls than what i am thinking of doing right now. > > This is how my approach...Am i doing it right ? > > subroutine computeResidualNorm(meshDM,F,fieldId,fNorm) > implicit none > #include "finclude/petsc.h90" > ! IO Variables > DM, intent(inout) :: meshDM > Vec, intent(inout) :: F > integer, intent(in ) :: fieldId > real(WP), intent(inout) :: fNorm > > ! Local Variables > PetscErrorCode :: ierr > PetscSection :: Section > PetscScalar, pointer :: FArray(:) > Vec :: gVec, lVec > PetscScalar, pointer :: lArray(:) > integer :: numFieldDof,offset,dofId > integer :: CellId,CellIdStart,CellIdEnd > PetscScalar :: zero > > zero = 0.0_WP > call DMGetGlobalVector(meshDM, gVec, ierr) > call DMGetLocalVector(meshDM, lVec, ierr) > call Vecset(lVec, zero, ierr) > > ! Get acess to default section > call DMGetDefaultSection(meshDM,section,ierr) > ! Get chart > call PetscSectionGetChart(section,cellIdstart,CellIdEnd,ierr) > call vecGetArrayF90(F, FArray, ierr) > call VecGetArrayF90(lVec, lArray, ierr) > do cellId=cellIdstart,cellIdEnd-1 > call PetscSectionGetFieldDof(section,CellId,fieldId,numFieldDof,ierr) > if(numFieldDof > 0) then > call PetscSectionGetFieldOffset(section,cellId,fieldId,offset,ierr) > do dofId=0,numFieldDof-1 > ic = offset+dofId > lArray(ic) = FArray(ic) > end do > end if > end do > call VecRestoreArrayF90(lVec, lArray, ierr) > call vecRestoreArrayF90(F, Farray,ierr) > > call DMLocalToGlobalBegin(meshDM, lVec, INSERT_VALUES, gVec, ierr) > call DMLocalToGlobalEnd(meshDM, lVec, INSERT_VALUES, gVec, ierr) > > call DMRestoreLocalVector(meshDM, lVec, ierr) > > call VecNorm( gVec, NORM_2, fNorm, ierr) > > call DMRestoreGlobalVector(meshDM, gVec, ierr) > end subroutine computeResidualNorm > > On Mon, Jan 13, 2014 at 4:15 PM, Matthew Knepley wrote: >> On Mon, Jan 13, 2014 at 4:11 PM, Dharmendar Reddy >> wrote: >>> >>> Hello, >>> Is there a petsc function which can help accomplish the following: >>> I am solving a coupled system of equations: >>> >>> F1(x1,x2,x3) = 0 >>> >>> F2(x1,x2,x3) = 0 >>> >>> F3(x1,x2,x3) = 0 >>> >>> >>> I am using DMPlex to handle to mesh data. I would like to compute the >>> norm of residual of each function. >>> >>> I assemble the function element wise. I am looking for some interface >>> like, >>> ComputNorm(dm, F, fieldIndex). >> >> >> Our thinking is generally that you would use >> >> DMCreateSubDM() >> >> and then use VecScatterCreate() with the IS it returns. This will map F into >> one of the F1/F2/F3. >> >> Does this make sense? >> >> Matt >> >>> >>> Thanks >>> Reddy >> >> >> >> >> -- >> What most experimenters take for granted before they begin their experiments >> is infinitely more interesting than any results to which their experiments >> lead. >> -- Norbert Wiener > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From Wadud.Miah at awe.co.uk Tue Jan 14 04:38:56 2014 From: Wadud.Miah at awe.co.uk (Wadud.Miah at awe.co.uk) Date: Tue, 14 Jan 2014 10:38:56 +0000 Subject: [petsc-users] PETSc Distributed Array vs. AIJ format Message-ID: <201401141039.s0EAd00O020787@msw1.awe.co.uk> Hello Petsc Users, I am using the distributed array format and have noticed it uses less memory than the AIJ format and less point-to-point communication. Does anyone know why this is so? I think the distributed array format uses less memory because it doesn't use look up tables like the AIJ format does. Any help will be greatly appreciated. Regards, Wadud. ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR -------------- next part -------------- An HTML attachment was scrubbed... URL: From remi.lacroix at inria.fr Tue Jan 14 06:54:00 2014 From: remi.lacroix at inria.fr (=?ISO-8859-1?Q?R=E9mi_Lacroix?=) Date: Tue, 14 Jan 2014 13:54:00 +0100 Subject: [petsc-users] Equivalent of VecScatter for index sets In-Reply-To: References: <52D40A95.1080206@inria.fr> <52D44C37.8020704@inria.fr> Message-ID: <52D53368.9000500@inria.fr> Le 13/01/2014 22:15, Matthew Knepley a ?crit : > On Mon, Jan 13, 2014 at 2:27 PM, R?mi Lacroix > wrote: > > Le 13/01/2014 19:00, Matthew Knepley a ?crit : >> On Mon, Jan 13, 2014 at 9:47 AM, R?mi Lacroix >> > wrote: >> >> Hello, >> >> I would like to permute an index set with another index set, >> just like you can do for vectors using VecScatter. >> >> I have two index sets IS1 and IS2 which share the same size >> but have different parallel layouts. I often need to permute >> vectors/matrices using those two index sets (as in first >> permute with IS1 then permute the result with IS2). Since I >> don't use the intermediate result, I would like to permute >> IS1 with IS2 to get a new index set so that I can permute >> directly my vectors/matrices with it. Is that possible using >> Petsc? >> >> >> We do not have this particular composition in our interface. >> However, you could accomplish this using PetscSF. >> >> Thanks, >> >> Matt > > Thanks for the quick answer. > > So basically I need to have a look at the underlying mechanism of > VecScatter and implement something similar for IS. How complex > would it be in practice? > > > Using the PetscSF interface instead of VecScatter should not be too hard. > > Matt In fact this is quite easier than I expected it to be. I have a quick question though. Is it safe to access the row layout of a matrix using "mat->rmap"? I wasn't able to find a function to do this. This way I would be able to use "PetscSFSetGraphLayout" directly. R?mi -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Tue Jan 14 09:32:08 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 14 Jan 2014 09:32:08 -0600 Subject: [petsc-users] PETSc Distributed Array vs. AIJ format In-Reply-To: <201401141039.s0EAd00O020787@msw1.awe.co.uk> References: <201401141039.s0EAd00O020787@msw1.awe.co.uk> Message-ID: On Tue, Jan 14, 2014 at 4:38 AM, wrote: > Hello Petsc Users, > > > > I am using the distributed array format and have noticed it uses less > memory than the AIJ format and less point-to-point communication. Does > anyone know why this is so? I think the distributed array format uses less > memory because it doesn?t use look up tables like the AIJ format does. Any > help will be greatly appreciated. > The DMDA does not actually store anything. Data is kept in Vec and Mat objects. Matt > Regards, > > Wadud. > > ___________________________________________________ > ____________________________ The information in this email and in any > attachment(s) is commercial in confidence. If you are not the named > addressee(s) or if you receive this email in error then any distribution, > copying or use of this communication or the information in it is strictly > prohibited. Please notify us immediately by email at admin.internet(at) > awe.co.uk, and then delete this message from your computer. While > attachments are virus checked, AWE plc does not accept any liability in > respect of any virus which is not detected. AWE Plc Registered in England > and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From hsahasra at purdue.edu Tue Jan 14 10:27:37 2014 From: hsahasra at purdue.edu (Harshad Sahasrabudhe) Date: Tue, 14 Jan 2014 11:27:37 -0500 Subject: [petsc-users] cudaSetDevice Message-ID: Hi Jed, Sometime back we talked about an interface which could handle other libraries calling cudaSetDevice simultaneously with PETSc. For example, in our case 2 different instances of PETSc calling cudaSetDevice. >Sure, but how will we actually share the device between libraries? What >if the other library was not PETSc, but something else, and they also >called cudaSetDevice, but with a different default mapping strategy? >We need an interface that handles this case. Do we already have any solution for this? If not, can we start looking at this case? Thanks, Harshad -------------- next part -------------- An HTML attachment was scrubbed... URL: From abilash at gmail.com Tue Jan 14 10:32:19 2014 From: abilash at gmail.com (Abilash Nair) Date: Tue, 14 Jan 2014 11:32:19 -0500 Subject: [petsc-users] PETSc/VC12 compilation Message-ID: Hello all, I am trying to build petsc to use as a library on a visual C++ project. I configured the petsc (v3.4.3) with VC++ 2012 under the shell provided by VC2012 with the following command (in cygwin): ./config/configure.py --with-mpi=0 --download-f2cblaslapack=1 --with-fc=0 --with-cc='win32fe cl' --with-debugging=1 then I did a make all; make test while still in cygwin. I have sent the log file outputs from these commands. As the files show, I am able to make with no errors at all, however I am unable to execute any of the tests (error being that a libstcc++.lib not found). I hope you would be able to suggest a path forward. Thanks! Abilash. -------------- next part -------------- An HTML attachment was scrubbed... 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Name: test.log Type: application/octet-stream Size: 1261 bytes Desc: not available URL: From balay at mcs.anl.gov Tue Jan 14 10:37:26 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Tue, 14 Jan 2014 10:37:26 -0600 Subject: [petsc-users] PETSc/VC12 compilation In-Reply-To: References: Message-ID: Try adding configure option: --with-cxx='win32fe cl' Satish On Tue, 14 Jan 2014, Abilash Nair wrote: > Hello all, > > I am trying to build petsc to use as a library on a visual C++ project. > > I configured the petsc (v3.4.3) with VC++ 2012 under the shell provided by > VC2012 with the following command (in cygwin): > > ./config/configure.py --with-mpi=0 --download-f2cblaslapack=1 --with-fc=0 > --with-cc='win32fe cl' --with-debugging=1 > > then I did a make all; make test while still in cygwin. I have sent the log > file outputs from these commands. As the files show, I am able to make with > no errors at all, however I am unable to execute any of the tests (error > being that a libstcc++.lib not found). > > I hope you would be able to suggest a path forward. > > Thanks! > Abilash. > From rupp at mcs.anl.gov Tue Jan 14 11:35:39 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Tue, 14 Jan 2014 18:35:39 +0100 Subject: [petsc-users] cudaSetDevice In-Reply-To: References: Message-ID: <52D5756B.4050104@mcs.anl.gov> Hi Harshad, > Sometime back we talked about an interface which could handle other > libraries calling cudaSetDevice simultaneously with PETSc. For example, > in our case 2 different instances of PETSc calling cudaSetDevice. > > >Sure, but how will we actually share the device between libraries? What > >if the other library was not PETSc, but something else, and they also > >called cudaSetDevice, but with a different default mapping strategy? > > >We need an interface that handles this case. > > Do we already have any solution for this? If not, can we start looking > at this case? I offered to provide a lazy initialization mechanism in order to be able to deal with such cases - this is still on my todo-list. Due to other obligations I couldn't find the time to implement this yet, but finally things are getting better so that I can provide the changes soon. Best regards, Karli From hsahasra at purdue.edu Tue Jan 14 12:03:01 2014 From: hsahasra at purdue.edu (Harshad Sahasrabudhe) Date: Tue, 14 Jan 2014 13:03:01 -0500 Subject: [petsc-users] cudaSetDevice In-Reply-To: <52D5756B.4050104@mcs.anl.gov> References: <52D5756B.4050104@mcs.anl.gov> Message-ID: Hi Karli, Lazy initialization mechanism looks good. But the problem is that the initialize will still happen twice if we create Vec in both our Petsc instances. Can we have an option for Petsc in which we can specify whether cudaSetDevice should be run by Petsc or not? Thanks, Harshad On Jan 14, 2014 12:35 PM, "Karl Rupp" wrote: > Hi Harshad, > > > Sometime back we talked about an interface which could handle other > >> libraries calling cudaSetDevice simultaneously with PETSc. For example, >> in our case 2 different instances of PETSc calling cudaSetDevice. >> >> >Sure, but how will we actually share the device between libraries? What >> >if the other library was not PETSc, but something else, and they also >> >called cudaSetDevice, but with a different default mapping strategy? >> >> >We need an interface that handles this case. >> >> Do we already have any solution for this? If not, can we start looking >> at this case? >> > > I offered to provide a lazy initialization mechanism in order to be able > to deal with such cases - this is still on my todo-list. Due to other > obligations I couldn't find the time to implement this yet, but finally > things are getting better so that I can provide the changes soon. > > Best regards, > Karli > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From rupp at mcs.anl.gov Tue Jan 14 14:04:37 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Tue, 14 Jan 2014 21:04:37 +0100 Subject: [petsc-users] cudaSetDevice In-Reply-To: References: <52D5756B.4050104@mcs.anl.gov> Message-ID: <52D59855.1010204@mcs.anl.gov> Hi Harshad, > Lazy initialization mechanism looks good. But the problem is that the > initialize will still happen twice if we create Vec in both our Petsc > instances. > > Can we have an option for Petsc in which we can specify whether > cudaSetDevice should be run by Petsc or not? yes, this is easy to provide once the lazy instantiation is in place. Best regards, Karli From abilash at gmail.com Tue Jan 14 14:18:21 2014 From: abilash at gmail.com (Abilash Nair) Date: Tue, 14 Jan 2014 15:18:21 -0500 Subject: [petsc-users] PETSc/VC12 compilation In-Reply-To: References: Message-ID: Thank you Satish for that input. I had a successful build and test on cygwin, However I notice two things: a) when I make a test case, say ex1, the make calls gcc; instead of win32fe cl and b) The petsc archive created is a ".a" extension, my assumption was that a ".lib" would be generated in this exercise. In any case, I am unable to build "ex1" as a project in VS2012, is there some flags that I need to play around with? I send the config, make and test logs with this email. Thank you greatly, Abilash. On Tue, Jan 14, 2014 at 11:37 AM, Satish Balay wrote: > Try adding configure option: --with-cxx='win32fe cl' > > Satish > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > Hello all, > > > > I am trying to build petsc to use as a library on a visual C++ project. > > > > I configured the petsc (v3.4.3) with VC++ 2012 under the shell provided > by > > VC2012 with the following command (in cygwin): > > > > ./config/configure.py --with-mpi=0 --download-f2cblaslapack=1 --with-fc=0 > > --with-cc='win32fe cl' --with-debugging=1 > > > > then I did a make all; make test while still in cygwin. I have sent the > log > > file outputs from these commands. As the files show, I am able to make > with > > no errors at all, however I am unable to execute any of the tests (error > > being that a libstcc++.lib not found). > > > > I hope you would be able to suggest a path forward. > > > > Thanks! > > Abilash. > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: configure.log Type: application/octet-stream Size: 2477099 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: make.log Type: application/octet-stream Size: 35027 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: ex1.out Type: application/octet-stream Size: 750 bytes Desc: not available URL: From jedbrown at mcs.anl.gov Mon Jan 13 12:41:22 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Mon, 13 Jan 2014 13:41:22 -0500 Subject: [petsc-users] DMPlexMatSetClosure from Fortran In-Reply-To: References: <87txd7dig6.fsf@jedbrown.org> Message-ID: <87fvord8rx.fsf@jedbrown.org> Dharmendar Reddy writes: > Hello Jed, > I see that plex.c has the following lines in the > function DMPLexMatSetClosure: > > 5640 PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); > 5641 PetscValidHeaderSpecific(globalSection, PETSC_SECTION_CLASSID, 3); > > the petsc code i have is at : v3.4.3-2568-gb45093d > > Does the fix you pushed takes care of above calls, even if i pass null object ? It was not documented to work that way, but it is a reasonable request so I added it. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jedbrown at mcs.anl.gov Mon Jan 13 14:47:00 2014 From: jedbrown at mcs.anl.gov (Jed Brown) Date: Mon, 13 Jan 2014 15:47:00 -0500 Subject: [petsc-users] Equivalent of VecScatter for index sets In-Reply-To: <52D44C37.8020704@inria.fr> References: <52D40A95.1080206@inria.fr> <52D44C37.8020704@inria.fr> Message-ID: <877ga3d2yj.fsf@jedbrown.org> R?mi Lacroix writes: > So basically I need to have a look at the underlying mechanism of > VecScatter and implement something similar for IS. How complex would it > be in practice? It is one operation with PetscSF. You'll call ISGetIndices(), use PetscSFSetGraph(), then PetscSFBcastBegin and End. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From balay at mcs.anl.gov Tue Jan 14 14:25:57 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Tue, 14 Jan 2014 14:25:57 -0600 Subject: [petsc-users] PETSc/VC12 compilation In-Reply-To: References: Message-ID: Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-mpi=0 --download-f2cblaslapack=1 --with-fc=0 --with-cxx="win32fe cl" --with-debugging=1 --useThreads=0 You've removed the option: --with-cc="win32fe cl" You need both: --with-cc="win32fe cl" --with-cxx="win32fe cl" Suggest: rm -rf arch-mswin-c-debug rerun configure... Satish On Tue, 14 Jan 2014, Abilash Nair wrote: > Thank you Satish for that input. I had a successful build and test on > cygwin, However I notice two things: a) when I make a test case, say ex1, > the make calls gcc; instead of win32fe cl and b) The petsc archive created > is a ".a" extension, my assumption was that a ".lib" would be generated in > this exercise. In any case, I am unable to build "ex1" as a project in > VS2012, is there some flags that I need to play around with? > > I send the config, make and test logs with this email. > > Thank you greatly, > Abilash. > > > On Tue, Jan 14, 2014 at 11:37 AM, Satish Balay wrote: > > > Try adding configure option: --with-cxx='win32fe cl' > > > > Satish > > > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > > > Hello all, > > > > > > I am trying to build petsc to use as a library on a visual C++ project. > > > > > > I configured the petsc (v3.4.3) with VC++ 2012 under the shell provided > > by > > > VC2012 with the following command (in cygwin): > > > > > > ./config/configure.py --with-mpi=0 --download-f2cblaslapack=1 --with-fc=0 > > > --with-cc='win32fe cl' --with-debugging=1 > > > > > > then I did a make all; make test while still in cygwin. I have sent the > > log > > > file outputs from these commands. As the files show, I am able to make > > with > > > no errors at all, however I am unable to execute any of the tests (error > > > being that a libstcc++.lib not found). > > > > > > I hope you would be able to suggest a path forward. > > > > > > Thanks! > > > Abilash. > > > > > > > > From abilash at gmail.com Tue Jan 14 15:36:30 2014 From: abilash at gmail.com (Abilash Nair) Date: Tue, 14 Jan 2014 16:36:30 -0500 Subject: [petsc-users] PETSc/VC12 compilation In-Reply-To: References: Message-ID: Thanks Satish, I was able to get to a successful petsc build. In a related question: could you please direct me to the version of slepc that compiles well with this installation of petsc? also, are there any special configurations that you would recommend for a VS2012-slepc build? Thanks, Abilash. On Tue, Jan 14, 2014 at 3:25 PM, Satish Balay wrote: > Configure Options: --configModules=PETSc.Configure > --optionsModule=PETSc.compilerOptions --with-mpi=0 > --download-f2cblaslapack=1 --with-fc=0 --with-cxx="win32fe cl" > --with-debugging=1 --useThreads=0 > > You've removed the option: --with-cc="win32fe cl" > > You need both: --with-cc="win32fe cl" --with-cxx="win32fe cl" > > Suggest: > > rm -rf arch-mswin-c-debug > rerun configure... > > Satish > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > Thank you Satish for that input. I had a successful build and test on > > cygwin, However I notice two things: a) when I make a test case, say ex1, > > the make calls gcc; instead of win32fe cl and b) The petsc archive > created > > is a ".a" extension, my assumption was that a ".lib" would be generated > in > > this exercise. In any case, I am unable to build "ex1" as a project in > > VS2012, is there some flags that I need to play around with? > > > > I send the config, make and test logs with this email. > > > > Thank you greatly, > > Abilash. > > > > > > On Tue, Jan 14, 2014 at 11:37 AM, Satish Balay > wrote: > > > > > Try adding configure option: --with-cxx='win32fe cl' > > > > > > Satish > > > > > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > > > > > Hello all, > > > > > > > > I am trying to build petsc to use as a library on a visual C++ > project. > > > > > > > > I configured the petsc (v3.4.3) with VC++ 2012 under the shell > provided > > > by > > > > VC2012 with the following command (in cygwin): > > > > > > > > ./config/configure.py --with-mpi=0 --download-f2cblaslapack=1 > --with-fc=0 > > > > --with-cc='win32fe cl' --with-debugging=1 > > > > > > > > then I did a make all; make test while still in cygwin. I have sent > the > > > log > > > > file outputs from these commands. As the files show, I am able to > make > > > with > > > > no errors at all, however I am unable to execute any of the tests > (error > > > > being that a libstcc++.lib not found). > > > > > > > > I hope you would be able to suggest a path forward. > > > > > > > > Thanks! > > > > Abilash. > > > > > > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Tue Jan 14 15:48:18 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Tue, 14 Jan 2014 15:48:18 -0600 Subject: [petsc-users] PETSc/VC12 compilation In-Reply-To: References: Message-ID: Latest slepc [3.4] should work with petsc-3.4 If you encounter problems - let us know. Satish On Tue, 14 Jan 2014, Abilash Nair wrote: > Thanks Satish, I was able to get to a successful petsc build. > > In a related question: could you please direct me to the version of slepc > that compiles well with this installation of petsc? also, are there any > special configurations that you would recommend for a VS2012-slepc build? > > Thanks, > Abilash. > > > On Tue, Jan 14, 2014 at 3:25 PM, Satish Balay wrote: > > > Configure Options: --configModules=PETSc.Configure > > --optionsModule=PETSc.compilerOptions --with-mpi=0 > > --download-f2cblaslapack=1 --with-fc=0 --with-cxx="win32fe cl" > > --with-debugging=1 --useThreads=0 > > > > You've removed the option: --with-cc="win32fe cl" > > > > You need both: --with-cc="win32fe cl" --with-cxx="win32fe cl" > > > > Suggest: > > > > rm -rf arch-mswin-c-debug > > rerun configure... > > > > Satish > > > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > > > Thank you Satish for that input. I had a successful build and test on > > > cygwin, However I notice two things: a) when I make a test case, say ex1, > > > the make calls gcc; instead of win32fe cl and b) The petsc archive > > created > > > is a ".a" extension, my assumption was that a ".lib" would be generated > > in > > > this exercise. In any case, I am unable to build "ex1" as a project in > > > VS2012, is there some flags that I need to play around with? > > > > > > I send the config, make and test logs with this email. > > > > > > Thank you greatly, > > > Abilash. > > > > > > > > > On Tue, Jan 14, 2014 at 11:37 AM, Satish Balay > > wrote: > > > > > > > Try adding configure option: --with-cxx='win32fe cl' > > > > > > > > Satish > > > > > > > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > > > > > > > Hello all, > > > > > > > > > > I am trying to build petsc to use as a library on a visual C++ > > project. > > > > > > > > > > I configured the petsc (v3.4.3) with VC++ 2012 under the shell > > provided > > > > by > > > > > VC2012 with the following command (in cygwin): > > > > > > > > > > ./config/configure.py --with-mpi=0 --download-f2cblaslapack=1 > > --with-fc=0 > > > > > --with-cc='win32fe cl' --with-debugging=1 > > > > > > > > > > then I did a make all; make test while still in cygwin. I have sent > > the > > > > log > > > > > file outputs from these commands. As the files show, I am able to > > make > > > > with > > > > > no errors at all, however I am unable to execute any of the tests > > (error > > > > > being that a libstcc++.lib not found). > > > > > > > > > > I hope you would be able to suggest a path forward. > > > > > > > > > > Thanks! > > > > > Abilash. > > > > > > > > > > > > > > > > > > > > > From knepley at gmail.com Tue Jan 14 21:07:16 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 14 Jan 2014 21:07:16 -0600 Subject: [petsc-users] Field wise residual norm In-Reply-To: References: Message-ID: On Mon, Jan 13, 2014 at 4:53 PM, Dharmendar Reddy wrote: > I may need to read more about those functions to see how i can get the > norms. But a quick look seem to suggest me that i will need lesser > function calls than what i am thinking of doing right now. > > This is how my approach...Am i doing it right ? > This looks like it should work. Matt > subroutine computeResidualNorm(meshDM,F,fieldId,fNorm) > implicit none > #include "finclude/petsc.h90" > ! IO Variables > DM, intent(inout) :: meshDM > Vec, intent(inout) :: F > integer, intent(in ) :: fieldId > real(WP), intent(inout) :: fNorm > > ! Local Variables > PetscErrorCode :: ierr > PetscSection :: Section > PetscScalar, pointer :: FArray(:) > Vec :: gVec, lVec > PetscScalar, pointer :: lArray(:) > integer :: numFieldDof,offset,dofId > integer :: CellId,CellIdStart,CellIdEnd > PetscScalar :: zero > > zero = 0.0_WP > call DMGetGlobalVector(meshDM, gVec, ierr) > call DMGetLocalVector(meshDM, lVec, ierr) > call Vecset(lVec, zero, ierr) > > ! Get acess to default section > call DMGetDefaultSection(meshDM,section,ierr) > ! Get chart > call PetscSectionGetChart(section,cellIdstart,CellIdEnd,ierr) > call vecGetArrayF90(F, FArray, ierr) > call VecGetArrayF90(lVec, lArray, ierr) > do cellId=cellIdstart,cellIdEnd-1 > call PetscSectionGetFieldDof(section,CellId,fieldId,numFieldDof,ierr) > if(numFieldDof > 0) then > call PetscSectionGetFieldOffset(section,cellId,fieldId,offset,ierr) > do dofId=0,numFieldDof-1 > ic = offset+dofId > lArray(ic) = FArray(ic) > end do > end if > end do > call VecRestoreArrayF90(lVec, lArray, ierr) > call vecRestoreArrayF90(F, Farray,ierr) > > call DMLocalToGlobalBegin(meshDM, lVec, INSERT_VALUES, gVec, ierr) > call DMLocalToGlobalEnd(meshDM, lVec, INSERT_VALUES, gVec, ierr) > > call DMRestoreLocalVector(meshDM, lVec, ierr) > > call VecNorm( gVec, NORM_2, fNorm, ierr) > > call DMRestoreGlobalVector(meshDM, gVec, ierr) > end subroutine computeResidualNorm > > On Mon, Jan 13, 2014 at 4:15 PM, Matthew Knepley > wrote: > > On Mon, Jan 13, 2014 at 4:11 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > > wrote: > >> > >> Hello, > >> Is there a petsc function which can help accomplish the > following: > >> I am solving a coupled system of equations: > >> > >> F1(x1,x2,x3) = 0 > >> > >> F2(x1,x2,x3) = 0 > >> > >> F3(x1,x2,x3) = 0 > >> > >> > >> I am using DMPlex to handle to mesh data. I would like to compute the > >> norm of residual of each function. > >> > >> I assemble the function element wise. I am looking for some interface > >> like, > >> ComputNorm(dm, F, fieldIndex). > > > > > > Our thinking is generally that you would use > > > > DMCreateSubDM() > > > > and then use VecScatterCreate() with the IS it returns. This will map F > into > > one of the F1/F2/F3. > > > > Does this make sense? > > > > Matt > > > >> > >> Thanks > >> Reddy > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Tue Jan 14 21:09:39 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 14 Jan 2014 21:09:39 -0600 Subject: [petsc-users] Field wise residual norm In-Reply-To: References: Message-ID: On Mon, Jan 13, 2014 at 5:33 PM, Dharmendar Reddy wrote: > Hello, > Is the following code on the lines of the approach you suggested: > > How do i handle the fortran call to DMCreateFieldIS where i am not > interested in fieldNames and numFields as output. > Do i pass PETSC_NULL_OBJECT ? > > subroutine computeResidualNormV2(meshDM,F,fieldId,fNorm) > implicit none > #include "finclude/petsc.h90" > ! IO Variables > DM, intent(inout) :: meshDM > Vec, intent(inout) :: F > integer, intent(in ) :: fieldId > real(WP), intent(inout) :: fNorm > > ! Local Variables > PetscErrorCode :: ierr > integer :: numField > IS :: subfieldIS > DM :: subDM > character(len=50), pointer :: fieldName(:) > Is, pointer :: fieldIS(:) > VecScatter :: vscat > > call DMCreateSubDM(meshDM,1, fieldId, subfieldIS,subdm, ierr) > Yes, this looks right. > call DMCreateFieldIS(meshDM, numField, fieldName, fieldIS, ierr) > You do not need this. > call DMGetGlobalVector(subDM, gVecsubField, ierr) > > call > VecScatterCreate(F,fieldIS(fieldId),gVecsubField,subfieldIS,vscat,ierr) > Here you should have call VecScatterCreate(F,subfieldIS,gVecsubField,PETSC_NULL_OBJECT,vscat,ierr) Matt > call VecScatterBegin(vscat, F, gVecsubField, INSET_VALUES, > SCATTER_FORWARD, ierr) > call VecScatterEnd(vscat, F, gVecsubField, INSET_VALUES, > SCATTER_FORWARD, ierr) > > call VecNorm( gVecsubField, NORM_2, fNorm, ierr) > > call DMRestoreGlobalVector(subDM, gVecsubField, ierr) > > end subroutine computeResidualNormV2 > > On Mon, Jan 13, 2014 at 4:53 PM, Dharmendar Reddy > wrote: > > I may need to read more about those functions to see how i can get the > > norms. But a quick look seem to suggest me that i will need lesser > > function calls than what i am thinking of doing right now. > > > > This is how my approach...Am i doing it right ? > > > > subroutine computeResidualNorm(meshDM,F,fieldId,fNorm) > > implicit none > > #include "finclude/petsc.h90" > > ! IO Variables > > DM, intent(inout) :: meshDM > > Vec, intent(inout) :: F > > integer, intent(in ) :: fieldId > > real(WP), intent(inout) :: fNorm > > > > ! Local Variables > > PetscErrorCode :: ierr > > PetscSection :: Section > > PetscScalar, pointer :: FArray(:) > > Vec :: gVec, lVec > > PetscScalar, pointer :: lArray(:) > > integer :: numFieldDof,offset,dofId > > integer :: CellId,CellIdStart,CellIdEnd > > PetscScalar :: zero > > > > zero = 0.0_WP > > call DMGetGlobalVector(meshDM, gVec, ierr) > > call DMGetLocalVector(meshDM, lVec, ierr) > > call Vecset(lVec, zero, ierr) > > > > ! Get acess to default section > > call DMGetDefaultSection(meshDM,section,ierr) > > ! Get chart > > call PetscSectionGetChart(section,cellIdstart,CellIdEnd,ierr) > > call vecGetArrayF90(F, FArray, ierr) > > call VecGetArrayF90(lVec, lArray, ierr) > > do cellId=cellIdstart,cellIdEnd-1 > > call PetscSectionGetFieldDof(section,CellId,fieldId,numFieldDof,ierr) > > if(numFieldDof > 0) then > > call PetscSectionGetFieldOffset(section,cellId,fieldId,offset,ierr) > > do dofId=0,numFieldDof-1 > > ic = offset+dofId > > lArray(ic) = FArray(ic) > > end do > > end if > > end do > > call VecRestoreArrayF90(lVec, lArray, ierr) > > call vecRestoreArrayF90(F, Farray,ierr) > > > > call DMLocalToGlobalBegin(meshDM, lVec, INSERT_VALUES, gVec, ierr) > > call DMLocalToGlobalEnd(meshDM, lVec, INSERT_VALUES, gVec, ierr) > > > > call DMRestoreLocalVector(meshDM, lVec, ierr) > > > > call VecNorm( gVec, NORM_2, fNorm, ierr) > > > > call DMRestoreGlobalVector(meshDM, gVec, ierr) > > end subroutine computeResidualNorm > > > > On Mon, Jan 13, 2014 at 4:15 PM, Matthew Knepley > wrote: > >> On Mon, Jan 13, 2014 at 4:11 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > >> wrote: > >>> > >>> Hello, > >>> Is there a petsc function which can help accomplish the > following: > >>> I am solving a coupled system of equations: > >>> > >>> F1(x1,x2,x3) = 0 > >>> > >>> F2(x1,x2,x3) = 0 > >>> > >>> F3(x1,x2,x3) = 0 > >>> > >>> > >>> I am using DMPlex to handle to mesh data. I would like to compute the > >>> norm of residual of each function. > >>> > >>> I assemble the function element wise. I am looking for some interface > >>> like, > >>> ComputNorm(dm, F, fieldIndex). > >> > >> > >> Our thinking is generally that you would use > >> > >> DMCreateSubDM() > >> > >> and then use VecScatterCreate() with the IS it returns. This will map F > into > >> one of the F1/F2/F3. > >> > >> Does this make sense? > >> > >> Matt > >> > >>> > >>> Thanks > >>> Reddy > >> > >> > >> > >> > >> -- > >> What most experimenters take for granted before they begin their > experiments > >> is infinitely more interesting than any results to which their > experiments > >> lead. > >> -- Norbert Wiener > > > > > > > > -- > > ----------------------------------------------------- > > Dharmendar Reddy Palle > > Graduate Student > > Microelectronics Research center, > > University of Texas at Austin, > > 10100 Burnet Road, Bldg. 160 > > MER 2.608F, TX 78758-4445 > > e-mail: dharmareddy84 at gmail.com > > Phone: +1-512-350-9082 > > United States of America. > > Homepage: https://webspace.utexas.edu/~dpr342 > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From zonexo at gmail.com Wed Jan 15 03:00:38 2014 From: zonexo at gmail.com (TAY wee-beng) Date: Wed, 15 Jan 2014 17:00:38 +0800 Subject: [petsc-users] Options used to compile HYPRE Message-ID: <52D64E36.90905@gmail.com> Hi, I install HYPRE with PETSc using --download-hypre=1. Can I find out what options were used to compile HYPRE? Thank you. -- Yours sincerely, TAY wee-beng From triou at cea.fr Wed Jan 15 05:57:57 2014 From: triou at cea.fr (Projet_TRIOU) Date: Wed, 15 Jan 2014 12:57:57 +0100 Subject: [petsc-users] MatAssemblyEnd hangs during a parallel calculation with PETSc>3.3 Message-ID: <52D677C5.90204@cea.fr> Hi all, I switched from PETSc 3.3 to PETSc 3.4.3 and all was fine except for one of my test case on 3 processors where one processor was dealing an empty local part of the global matrix. My code hangs just during the call at MatAssemblyEnd: ierr = MatMPIAIJSetPreallocation(MatricePetsc, PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); ... ierr = MatAssemblyEnd(MatricePetsc, MAT_FINAL_ASSEMBLY); When I debugged, I notice on the empty processor, that in src/mat/impls/aij/mpi/mpiaij.c: if (!((Mat_SeqAIJ*)aij->B->data)->nonew) { ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); if (mat->was_assembled && !other_disassembled) { ierr = MatDisAssemble_MPIAIJ(mat);CHKERRQ(ierr); } ((Mat_SeqAIJ*)aij->B->data)->nonew was 0 on the "empty" processor and -2 on the 2 others... I bypassed my problem with a different call to MatMPIAIJSetPreallocation(): if (nb_rows==0) // Local matrix is empty ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, 0, NULL, 0, NULL); else ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); Now, it runs well. So I don't know if it is a PETSc regression or if I was abusively calling MatMPISBAIJSetPreallocation with d_nnz/o_nnz empty arrays.... Thanks, Pierre From bsmith at mcs.anl.gov Wed Jan 15 08:10:29 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 08:10:29 -0600 Subject: [petsc-users] Options used to compile HYPRE In-Reply-To: <52D64E36.90905@gmail.com> References: <52D64E36.90905@gmail.com> Message-ID: <17A55816-F87C-4B25-B783-94160A4772DD@mcs.anl.gov> On Jan 15, 2014, at 3:00 AM, TAY wee-beng wrote: > Hi, > > I install HYPRE with PETSc using --download-hypre=1. > > Can I find out what options were used to compile HYPRE? ${PETSC_ARCH}/conf/hypre similar for all external packages Barry > > Thank you. > > -- > Yours sincerely, > > TAY wee-beng > From jed at jedbrown.org Wed Jan 15 03:46:29 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 15 Jan 2014 01:46:29 -0800 Subject: [petsc-users] Options used to compile HYPRE In-Reply-To: <52D64E36.90905@gmail.com> References: <52D64E36.90905@gmail.com> Message-ID: <87ppnt8tmy.fsf@jedbrown.org> TAY wee-beng writes: > Hi, > > I install HYPRE with PETSc using --download-hypre=1. > > Can I find out what options were used to compile HYPRE? Look in configure.log or $PETSC_ARCH/externalpackages/hypre-*/config.log -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Wed Jan 15 11:09:58 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 15 Jan 2014 11:09:58 -0600 Subject: [petsc-users] MatAssemblyEnd hangs during a parallel calculation with PETSc>3.3 In-Reply-To: <52D677C5.90204@cea.fr> References: <52D677C5.90204@cea.fr> Message-ID: On Wed, Jan 15, 2014 at 5:57 AM, Projet_TRIOU wrote: > Hi all, > > I switched from PETSc 3.3 to PETSc 3.4.3 and all was fine except for > one of my test case on 3 processors where one processor was > dealing an empty local part of the global matrix. > > My code hangs just during the call at MatAssemblyEnd: > > ierr = MatMPIAIJSetPreallocation(MatricePetsc, PETSC_DEFAULT, > d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); > ... > ierr = MatAssemblyEnd(MatricePetsc, MAT_FINAL_ASSEMBLY); > > When I debugged, I notice on the empty processor, that in > src/mat/impls/aij/mpi/mpiaij.c: > > if (!((Mat_SeqAIJ*)aij->B->data)->nonew) { > ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled, > 1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); > if (mat->was_assembled && !other_disassembled) { > ierr = MatDisAssemble_MPIAIJ(mat);CHKERRQ(ierr); > } > Good call. This is definitely a bug. I will get it fixed. Matt > ((Mat_SeqAIJ*)aij->B->data)->nonew was 0 on the "empty" processor > and -2 on the 2 others... > > I bypassed my problem with a different call to MatMPIAIJSetPreallocation(): > > if (nb_rows==0) // Local matrix is empty > ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, 0, > NULL, 0, NULL); > else > ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, > PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); > > Now, it runs well. So I don't know if it is a PETSc regression or if I was > abusively > calling MatMPISBAIJSetPreallocation with d_nnz/o_nnz empty arrays.... > > Thanks, > > Pierre > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From abilash at gmail.com Wed Jan 15 11:47:12 2014 From: abilash at gmail.com (Abilash Nair) Date: Wed, 15 Jan 2014 12:47:12 -0500 Subject: [petsc-users] PETSc/VC12 compilation In-Reply-To: References: Message-ID: Thanks! it compiles fine. On Tue, Jan 14, 2014 at 4:48 PM, Satish Balay wrote: > Latest slepc [3.4] should work with petsc-3.4 > > If you encounter problems - let us know. > > Satish > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > Thanks Satish, I was able to get to a successful petsc build. > > > > In a related question: could you please direct me to the version of slepc > > that compiles well with this installation of petsc? also, are there any > > special configurations that you would recommend for a VS2012-slepc build? > > > > Thanks, > > Abilash. > > > > > > On Tue, Jan 14, 2014 at 3:25 PM, Satish Balay wrote: > > > > > Configure Options: --configModules=PETSc.Configure > > > --optionsModule=PETSc.compilerOptions --with-mpi=0 > > > --download-f2cblaslapack=1 --with-fc=0 --with-cxx="win32fe cl" > > > --with-debugging=1 --useThreads=0 > > > > > > You've removed the option: --with-cc="win32fe cl" > > > > > > You need both: --with-cc="win32fe cl" --with-cxx="win32fe cl" > > > > > > Suggest: > > > > > > rm -rf arch-mswin-c-debug > > > rerun configure... > > > > > > Satish > > > > > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > > > > > Thank you Satish for that input. I had a successful build and test on > > > > cygwin, However I notice two things: a) when I make a test case, say > ex1, > > > > the make calls gcc; instead of win32fe cl and b) The petsc archive > > > created > > > > is a ".a" extension, my assumption was that a ".lib" would be > generated > > > in > > > > this exercise. In any case, I am unable to build "ex1" as a project > in > > > > VS2012, is there some flags that I need to play around with? > > > > > > > > I send the config, make and test logs with this email. > > > > > > > > Thank you greatly, > > > > Abilash. > > > > > > > > > > > > On Tue, Jan 14, 2014 at 11:37 AM, Satish Balay > > > wrote: > > > > > > > > > Try adding configure option: --with-cxx='win32fe cl' > > > > > > > > > > Satish > > > > > > > > > > On Tue, 14 Jan 2014, Abilash Nair wrote: > > > > > > > > > > > Hello all, > > > > > > > > > > > > I am trying to build petsc to use as a library on a visual C++ > > > project. > > > > > > > > > > > > I configured the petsc (v3.4.3) with VC++ 2012 under the shell > > > provided > > > > > by > > > > > > VC2012 with the following command (in cygwin): > > > > > > > > > > > > ./config/configure.py --with-mpi=0 --download-f2cblaslapack=1 > > > --with-fc=0 > > > > > > --with-cc='win32fe cl' --with-debugging=1 > > > > > > > > > > > > then I did a make all; make test while still in cygwin. I have > sent > > > the > > > > > log > > > > > > file outputs from these commands. As the files show, I am able to > > > make > > > > > with > > > > > > no errors at all, however I am unable to execute any of the tests > > > (error > > > > > > being that a libstcc++.lib not found). > > > > > > > > > > > > I hope you would be able to suggest a path forward. > > > > > > > > > > > > Thanks! > > > > > > Abilash. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bourdin at lsu.edu Wed Jan 15 13:04:54 2014 From: bourdin at lsu.edu (Blaise A Bourdin) Date: Wed, 15 Jan 2014 19:04:54 +0000 Subject: [petsc-users] printing help Message-ID: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> Hi, Is there a way to prevent the help section for basic objects from being printed multiple times? In the attached example, the basic help for Vec and Mat is printed twice, but I would prefer if it were printed only once. -------------- next part -------------- A non-text attachment was scrubbed... Name: testPrintOptions.c Type: application/octet-stream Size: 991 bytes Desc: testPrintOptions.c URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: ATT00001.txt URL: From billingsjj at ornl.gov Wed Jan 15 13:14:02 2014 From: billingsjj at ornl.gov (Jay J. Billings) Date: Wed, 15 Jan 2014 14:14:02 -0500 Subject: [petsc-users] Local size 7 not compatible with block size 13 Message-ID: <52D6DDFA.2010801@ornl.gov> Everyone, I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. Jay [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Arguments are incompatible! [1]PETSC ERROR: Arguments are incompatible! [0]PETSC ERROR: Local size 7 not compatible with block size 13! [1]PETSC ERROR: Local size 7 not compatible with block size 13! [0]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp -- Jay Jay Billings Oak Ridge National Laboratory Twitter Handle: @jayjaybillings From bsmith at mcs.anl.gov Wed Jan 15 14:28:52 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 14:28:52 -0600 Subject: [petsc-users] MatAssemblyEnd hangs during a parallel calculation with PETSc>3.3 In-Reply-To: <52D677C5.90204@cea.fr> References: <52D677C5.90204@cea.fr> Message-ID: <9B7118DC-6894-4E1E-8137-4456D2150D47@mcs.anl.gov> Hmm, sometimes you talk about MatMPIAIJSetPreallocation() and sometimes MatMPISBAIJSetPreallocation() which one is it? If a process has zero rows that should not affect the nonew variable. It is crucial the the SetPreallocation routines be called on ALL processes that share the matrix, even if they have zero rows, but it shouldn?t matter what the values are for a matrix with zero rows. Can you send use your test case so we can track down the problem? Barry On Jan 15, 2014, at 5:57 AM, Projet_TRIOU wrote: > Hi all, > > I switched from PETSc 3.3 to PETSc 3.4.3 and all was fine except for > one of my test case on 3 processors where one processor was > dealing an empty local part of the global matrix. > > My code hangs just during the call at MatAssemblyEnd: > > ierr = MatMPIAIJSetPreallocation(MatricePetsc, PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); > ... > ierr = MatAssemblyEnd(MatricePetsc, MAT_FINAL_ASSEMBLY); > > When I debugged, I notice on the empty processor, that in > src/mat/impls/aij/mpi/mpiaij.c: > > if (!((Mat_SeqAIJ*)aij->B->data)->nonew) { > ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); > if (mat->was_assembled && !other_disassembled) { > ierr = MatDisAssemble_MPIAIJ(mat);CHKERRQ(ierr); > } > > ((Mat_SeqAIJ*)aij->B->data)->nonew was 0 on the "empty" processor > and -2 on the 2 others... > > I bypassed my problem with a different call to MatMPIAIJSetPreallocation(): > > if (nb_rows==0) // Local matrix is empty > ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, 0, NULL, 0, NULL); > else > ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); > > Now, it runs well. So I don't know if it is a PETSc regression or if I was abusively > calling MatMPISBAIJSetPreallocation with d_nnz/o_nnz empty arrays.... > > Thanks, > > Pierre > From knepley at gmail.com Wed Jan 15 14:31:49 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 15 Jan 2014 14:31:49 -0600 Subject: [petsc-users] MatAssemblyEnd hangs during a parallel calculation with PETSc>3.3 In-Reply-To: <9B7118DC-6894-4E1E-8137-4456D2150D47@mcs.anl.gov> References: <52D677C5.90204@cea.fr> <9B7118DC-6894-4E1E-8137-4456D2150D47@mcs.anl.gov> Message-ID: On Wed, Jan 15, 2014 at 2:28 PM, Barry Smith wrote: > > Hmm, sometimes you talk about MatMPIAIJSetPreallocation() and sometimes > MatMPISBAIJSetPreallocation() which one is it? > > If a process has zero rows that should not affect the nonew variable. > > It is crucial the the SetPreallocation routines be called on ALL > processes that share the matrix, even if they have zero rows, but it > shouldn?t matter what the values are for a matrix with zero rows. > > Can you send use your test case so we can track down the problem? I sent a mail to petsc-dev explaining the problem. Matt > > Barry > > > > On Jan 15, 2014, at 5:57 AM, Projet_TRIOU wrote: > > > Hi all, > > > > I switched from PETSc 3.3 to PETSc 3.4.3 and all was fine except for > > one of my test case on 3 processors where one processor was > > dealing an empty local part of the global matrix. > > > > My code hangs just during the call at MatAssemblyEnd: > > > > ierr = MatMPIAIJSetPreallocation(MatricePetsc, PETSC_DEFAULT, > d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); > > ... > > ierr = MatAssemblyEnd(MatricePetsc, MAT_FINAL_ASSEMBLY); > > > > When I debugged, I notice on the empty processor, that in > > src/mat/impls/aij/mpi/mpiaij.c: > > > > if (!((Mat_SeqAIJ*)aij->B->data)->nonew) { > > ierr = > MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); > > if (mat->was_assembled && !other_disassembled) { > > ierr = MatDisAssemble_MPIAIJ(mat);CHKERRQ(ierr); > > } > > > > ((Mat_SeqAIJ*)aij->B->data)->nonew was 0 on the "empty" processor > > and -2 on the 2 others... > > > > I bypassed my problem with a different call to > MatMPIAIJSetPreallocation(): > > > > if (nb_rows==0) // Local matrix is empty > > ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, 0, > NULL, 0, NULL); > > else > > ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, > PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); > > > > Now, it runs well. So I don't know if it is a PETSc regression or if I > was abusively > > calling MatMPISBAIJSetPreallocation with d_nnz/o_nnz empty arrays.... > > > > Thanks, > > > > Pierre > > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Jan 15 16:03:29 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 16:03:29 -0600 Subject: [petsc-users] printing help In-Reply-To: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> References: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> Message-ID: <56B89114-8D26-48FE-976D-279963BF2881@mcs.anl.gov> Blaise, Currently there is no way to do this. For a given object it will only print the help message once, but if you create two objects of the same type and do XXXSetFromOptions() for each it will print it twice. Note that if all the prefixes for the objects are different then this is what you want. However if you are not setting prefix options seemingly identical help messages will get printed. To change this we would need to introduce a way of tracking alreadyprinted per class and per prefix instead of per object. It is unlikely we will change this. We recommend not using VecSetFromOptions() and MatSetFromOptions() in real applications and for each KSP, SNES, and TS using a different prefix so the help is appropriate. I agree getting a bunch of identical help messages is annoying. Barry On Jan 15, 2014, at 1:04 PM, Blaise A Bourdin wrote: > Hi, > > Is there a way to prevent the help section for basic objects from being printed multiple times? In the attached example, the basic help for Vec and Mat is printed twice, but I would prefer if it were printed only once. > bourdin at galerkin:Options $ ./testPrintOptions -h > -------------------------------------------------------------------------- > Petsc Development GIT revision: v3.4.3-2316-gaf107cc GIT Date: 2014-01-15 10:14:00 -0600 > The PETSc Team > : > : > : > Vector (Vec) options ------------------------------------------------- > -vec_type : Vector type (one of) seq mpi standard shared (VecSetType) > Vector (Vec) options ------------------------------------------------- > -vec_type : Vector type (one of) seq mpi standard shared (VecSetType) > Options for SEQAIJ matrix ------------------------------------------------- > -mat_no_unroll: Do not optimize for inodes (slower) (None) > -mat_no_inode: Do not optimize for inodes -slower- (None) > -mat_inode_limit <5>: Do not use inodes larger then this value (None) > Matrix (Mat) options ------------------------------------------------- > -mat_block_size <-1>: Set the blocksize used to store the matrix (MatSetBlockSize) > -mat_type : Matrix type (one of) mffd mpimaij seqmaij maij is shell composite mpiaij > seqaij mpiaijperm seqaijperm seqaijcrl mpiaijcrl mpibaij seqbaij mpisbaij seqsbaij mpibstrm seqbstrm mpisbstrm seqsbstrm mpidense seqdense mpiadj scatter blockmat nest (MatSetType) > -mat_is_symmetric: Checks if mat is symmetric on MatAssemblyEnd() (MatIsSymmetric) > -mat_is_symmetric <0>: Checks if mat is symmetric on MatAssemblyEnd() (MatIsSymmetric) > -mat_null_space_test: Checks if provided null space is correct in MatAssemblyEnd() (MatSetNullSpaceTest) > -mat_new_nonzero_location_err: Generate an error if new nonzeros are created in the matrix structure (useful to test preallocation) (MatSetOption) > -mat_new_nonzero_allocation_err: Generate an error if new nonzeros are allocated in the matrix structure (useful to test preallocation) (MatSetOption) > Options for SEQAIJ matrix ------------------------------------------------- > -mat_no_unroll: Do not optimize for inodes (slower) (None) > -mat_no_inode: Do not optimize for inodes -slower- (None) > -mat_inode_limit <5>: Do not use inodes larger then this value (None) > Matrix (Mat) options ------------------------------------------------- > -mat_block_size <-1>: Set the blocksize used to store the matrix (MatSetBlockSize) > -mat_type : Matrix type (one of) mffd mpimaij seqmaij maij is shell composite mpiaij > seqaij mpiaijperm seqaijperm seqaijcrl mpiaijcrl mpibaij seqbaij mpisbaij seqsbaij mpibstrm seqbstrm mpisbstrm seqsbstrm mpidense seqdense mpiadj scatter blockmat nest (MatSetType) > -mat_is_symmetric: Checks if mat is symmetric on MatAssemblyEnd() (MatIsSymmetric) > -mat_is_symmetric <0>: Checks if mat is symmetric on MatAssemblyEnd() (MatIsSymmetric) > -mat_null_space_test: Checks if provided null space is correct in MatAssemblyEnd() (MatSetNullSpaceTest) > -mat_new_nonzero_location_err: Generate an error if new nonzeros are created in the matrix structure (useful to test preallocation) (MatSetOption) > -mat_new_nonzero_allocation_err: Generate an error if new nonzeros are allocated in the matrix structure (useful to test preallocation) (MatSetOption) > > > Blaise > -- > Department of Mathematics and Center for Computation & Technology > Louisiana State University, Baton Rouge, LA 70803, USA > Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin > > > > > > > From bsmith at mcs.anl.gov Wed Jan 15 16:06:36 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 16:06:36 -0600 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: <52D6DDFA.2010801@ornl.gov> References: <52D6DDFA.2010801@ornl.gov> Message-ID: Jay, This is our bug. We?ll need to figure out the fix and get back to you. Barry On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: > Everyone, > > I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. > > Jay > > [1]PETSC ERROR: --------------------- Error Message ------------------------------------ > [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ > [0]PETSC ERROR: Arguments are incompatible! > [1]PETSC ERROR: Arguments are incompatible! > [0]PETSC ERROR: Local size 7 not compatible with block size 13! > [1]PETSC ERROR: Local size 7 not compatible with block size 13! > [0]PETSC ERROR: ------------------------------------------------------------------------ > [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 > [1]PETSC ERROR: See docs/changes/index.html for recent updates. > [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [1]PETSC ERROR: See docs/index.html for manual pages. > [1]PETSC ERROR: ------------------------------------------------------------------------ > [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 > [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib > [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 > [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 > [1]PETSC ERROR: ------------------------------------------------------------------------ > [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c > [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c > [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c > [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c > [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp > ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 > [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib > [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 > [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c > [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c > [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c > [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c > [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp > > -- > Jay Jay Billings > Oak Ridge National Laboratory > Twitter Handle: @jayjaybillings > From jed at jedbrown.org Wed Jan 15 16:32:23 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 15 Jan 2014 14:32:23 -0800 Subject: [petsc-users] printing help In-Reply-To: <56B89114-8D26-48FE-976D-279963BF2881@mcs.anl.gov> References: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> <56B89114-8D26-48FE-976D-279963BF2881@mcs.anl.gov> Message-ID: <87vbxk6fm0.fsf@jedbrown.org> Barry Smith writes: > To change this we would need to introduce a way of tracking > alreadyprinted per class and per prefix instead of per object. It > is unlikely we will change this. We recommend not using > VecSetFromOptions() and MatSetFromOptions() in real applications We really have to do something about the repeated Vec and Mat help when there is no prefix. This is by far the most important case. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Wed Jan 15 17:26:05 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 17:26:05 -0600 Subject: [petsc-users] printing help In-Reply-To: <87vbxk6fm0.fsf@jedbrown.org> References: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> <56B89114-8D26-48FE-976D-279963BF2881@mcs.anl.gov> <87vbxk6fm0.fsf@jedbrown.org> Message-ID: <3A0C27FB-B7D0-49D4-9460-DBF19E16CD35@mcs.anl.gov> On Jan 15, 2014, at 4:32 PM, Jed Brown wrote: > Barry Smith writes: >> To change this we would need to introduce a way of tracking >> alreadyprinted per class and per prefix instead of per object. It >> is unlikely we will change this. We recommend not using >> VecSetFromOptions() and MatSetFromOptions() in real applications > > We really have to do something about the repeated Vec and Mat help when > there is no prefix. This is by far the most important case. Hmm, do we even want people calling VecSetFromOptions() and MatSetFromOptions()? Especially for more than 1 or 2 ?master? items which will have different prefixes anyways. I don?t think we want calls to VecSetFromOptions() and MatSetFromOptions() from within other PETSc classes (except for possible a single master item) that is controlled from for example a DM. Barry From bsmith at mcs.anl.gov Wed Jan 15 20:00:10 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 20:00:10 -0600 Subject: [petsc-users] printing help In-Reply-To: <35F09BE9-0785-43CF-83E8-0D039C21A6CA@lsu.edu> References: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> <56B89114-8D26-48FE-976D-279963BF2881@mcs.anl.gov> <87vbxk6fm0.fsf@jedbrown.org> <3A0C27FB-B7D0-49D4-9460-DBF19E16CD35@mcs.anl.gov> <35F09BE9-0785-43CF-83E8-0D039C21A6CA@lsu.edu> Message-ID: On Jan 15, 2014, at 6:56 PM, Blaise A Bourdin wrote: > > On Jan 15, 2014, at 5:26 PM, Barry Smith wrote: > >> >> On Jan 15, 2014, at 4:32 PM, Jed Brown wrote: >> >>> Barry Smith writes: >>>> To change this we would need to introduce a way of tracking >>>> alreadyprinted per class and per prefix instead of per object. It >>>> is unlikely we will change this. We recommend not using >>>> VecSetFromOptions() and MatSetFromOptions() in real applications >>> >>> We really have to do something about the repeated Vec and Mat help when >>> there is no prefix. This is by far the most important case. >> >> Hmm, do we even want people calling VecSetFromOptions() and MatSetFromOptions()? Especially for more than 1 or 2 ?master? items which will have different prefixes anyways. I don?t think we want calls to VecSetFromOptions() and MatSetFromOptions() from within other PETSc classes (except for possible a single master item) that is controlled from for example a DM. > > That makes a lot of sense, but when Vecs are created from a Mat or a DM, the call to VecSetFromOptions serves a purpose. In particular, it does the call to VecSetType. How do I get the VecType from a DM? DMSet/GetMatType() and DMSet/GetVecType() -dm_mat_type -dm_vec_type note that these will only print one message for each dm. Note also that if you have a SNES, KSP, PC, or Mat lying around it is better call KSPGetVecs() or MatGetVecs() instead of using VecCreate() since the KSP or Mat make sure to provide the Vec with the right layout. > > Blaise > > -- > Department of Mathematics and Center for Computation & Technology > Louisiana State University, Baton Rouge, LA 70803, USA > Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin From bsmith at mcs.anl.gov Wed Jan 15 20:35:59 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 20:35:59 -0600 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: References: <52D6DDFA.2010801@ornl.gov> Message-ID: <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> This is now fixed in master and next On Jan 15, 2014, at 4:06 PM, Barry Smith wrote: > > Jay, > > This is our bug. We?ll need to figure out the fix and get back to you. > > Barry > > On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: > >> Everyone, >> >> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. >> >> Jay >> >> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [0]PETSC ERROR: Arguments are incompatible! >> [1]PETSC ERROR: Arguments are incompatible! >> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [1]PETSC ERROR: See docs/index.html for manual pages. >> [1]PETSC ERROR: ------------------------------------------------------------------------ >> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >> [1]PETSC ERROR: ------------------------------------------------------------------------ >> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [0]PETSC ERROR: See docs/index.html for manual pages. >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >> >> -- >> Jay Jay Billings >> Oak Ridge National Laboratory >> Twitter Handle: @jayjaybillings >> > From info at jubileedvds.com Wed Jan 15 21:06:54 2014 From: info at jubileedvds.com (Jubilee DVDs) Date: Wed, 15 Jan 2014 22:06:54 -0500 Subject: [petsc-users] Jubilee Newsletter Issue No. 3 Message-ID: <52d74cce4bafb_3b9cc6a930275c0@worker114.madmimi.com.tmail> Jubilee Newsletter ========== Issue No. 3 - January 2014 Dear Movie Lover, You are receiving my newsletter because you purchased or expressed interest in a movie at Jubilee DVDs. 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Lauderdale, FL 33312 -------------- next part -------------- An HTML attachment was scrubbed... URL: From Andrew.Wilkins at csiro.au Wed Jan 15 21:43:54 2014 From: Andrew.Wilkins at csiro.au (Andrew.Wilkins at csiro.au) Date: Thu, 16 Jan 2014 03:43:54 +0000 Subject: [petsc-users] Jubilee Newsletter Issue No. 3 In-Reply-To: <52d74cce4bafb_3b9cc6a930275c0@worker114.madmimi.com.tmail> References: <52d74cce4bafb_3b9cc6a930275c0@worker114.madmimi.com.tmail> Message-ID: <57596E6532C9F54F9DF09BCDFE7B1D3A86485D9F@exmbx06-cdc.nexus.csiro.au> Hi, Could you please re-phrase your question? I?m finding it difficult to figure out which linear solver you?re attempting to use. a Ph: +61 7 3327 4497. Fax: +61 7 3327 4666 Queensland Centre for Advanced Technologies PO Box 883, Kenmore, Qld, 4069 From: petsc-users-bounces at mcs.anl.gov [mailto:petsc-users-bounces at mcs.anl.gov] On Behalf Of Jubilee DVDs Sent: Thursday, 16 January 2014 1:07 PM To: petsc-users at mcs.anl.gov Subject: [petsc-users] Jubilee Newsletter Issue No. 3 Jubilee Newsletter Issue No. 3 - January 2014 Dear Movie Lover, You are receiving my newsletter because you purchased or expressed interest in a mo [Image removed by sender.] [Image removed by sender. Jubilee Newsletter] Jubilee Newsletter Issue No. 3 - January 2014 [Image removed by sender. ***] Dear Movie Lover, You are receiving my newsletter because you purchased or expressed interest in a movie at Jubilee DVDs. If you don't want to receive the newsletter, just click on the unsubscribe link at the top of the page and you won't get any more emails. I hope you enjoyed your movie and are interested in the new titles being added at the website. 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Erik Aaes] Erik Aaes was an art director born in 1899 in Denmark. He was the designer of imaginative sets for films of Cavalcanti, Renoir, and Dreyer, among others. Ordet (1955) Herr Puntila und sein Knecht Matti (1955) Hidden Fear (1957) I A Woman (1965) [Image removed by sender. ***] Movie Spotlight [Image removed by sender. Und abends in die scala] ...und abends in die Scala (1958) Gloria del Castro is a successful record star, whose voice enchants the world. But till now, no one has seen her face. Even the tabloid reporters haven't been able to get a photograph of the singer. Only her manager, Spadolini, knows the star's secret: Gloria's real name is Yvette and she's the wife of the French Minister for Family Affairs, who has no idea about the double life his wife is leading. The minister would never approve of his wife's career choice. When a marital crisis between the two raises its ugly head, manager Spadolini crosses his fingers that there'll be a divorce, so that Gloria (Yvette) can finally appear in public. He hastily signs a contract for her at the new Berlin "Scala", but the pair reconciles and Gloria has no intention of appearing in public. [Image removed by sender. ***] Quick Links Comedy Drama Westerns Musicals Adventure Documentary TV Shows Register with us Contact us Search for a movie [Image removed by sender. ***] Jubilee DVDs is a film archive ready to serve you. I want and appreciate your business. I want to grow to be a trusted and reliable service to you and your friends and family. I strive to collect only the best prints of the titles offered. Jubilee DVDs PO Box 121055 Ft Lauderdale, Florida 33312 ?2014 Jubilee DVDs | Jubilee DVDs, PO Box 121055, Ft. Lauderdale, FL 33312 [Rounded Rectangle: Web Version]Web Version [Rounded Rectangle: Forward] Forward [Rounded Rectangle: Unsubscribe] Unsubscribe Powered by Mad Mimi ? -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: ~WRD000.jpg Type: image/jpeg Size: 823 bytes Desc: ~WRD000.jpg URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image001.jpg Type: image/jpeg Size: 1386 bytes Desc: image001.jpg URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image002.jpg Type: image/jpeg Size: 893 bytes Desc: image002.jpg URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image003.jpg Type: image/jpeg Size: 745 bytes Desc: image003.jpg URL: -------------- next part -------------- A non-text attachment was scrubbed... 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Name: image009.png Type: image/png Size: 755 bytes Desc: image009.png URL: From bourdin at lsu.edu Wed Jan 15 21:58:15 2014 From: bourdin at lsu.edu (Blaise A Bourdin) Date: Thu, 16 Jan 2014 03:58:15 +0000 Subject: [petsc-users] printing help In-Reply-To: References: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> <56B89114-8D26-48FE-976D-279963BF2881@mcs.anl.gov> <87vbxk6fm0.fsf@jedbrown.org> <3A0C27FB-B7D0-49D4-9460-DBF19E16CD35@mcs.anl.gov> <35F09BE9-0785-43CF-83E8-0D039C21A6CA@lsu.edu> Message-ID: <10AB17F9-5BB8-4099-9C3F-50B8C81E9A5E@lsu.edu> On Jan 15, 2014, at 8:00 PM, Barry Smith wrote: > > On Jan 15, 2014, at 6:56 PM, Blaise A Bourdin wrote: > >> >> On Jan 15, 2014, at 5:26 PM, Barry Smith wrote: >> >>> >>> On Jan 15, 2014, at 4:32 PM, Jed Brown wrote: >>> >>>> Barry Smith writes: >>>>> To change this we would need to introduce a way of tracking >>>>> alreadyprinted per class and per prefix instead of per object. It >>>>> is unlikely we will change this. We recommend not using >>>>> VecSetFromOptions() and MatSetFromOptions() in real applications >>>> >>>> We really have to do something about the repeated Vec and Mat help when >>>> there is no prefix. This is by far the most important case. >>> >>> Hmm, do we even want people calling VecSetFromOptions() and MatSetFromOptions()? Especially for more than 1 or 2 ?master? items which will have different prefixes anyways. I don?t think we want calls to VecSetFromOptions() and MatSetFromOptions() from within other PETSc classes (except for possible a single master item) that is controlled from for example a DM. >> >> That makes a lot of sense, but when Vecs are created from a Mat or a DM, the call to VecSetFromOptions serves a purpose. In particular, it does the call to VecSetType. How do I get the VecType from a DM? > > DMSet/GetMatType() and DMSet/GetVecType() -dm_mat_type -dm_vec_type note that these will only print one message for each dm. > > Note also that if you have a SNES, KSP, PC, or Mat lying around it is better call KSPGetVecs() or MatGetVecs() instead of using VecCreate() since the KSP or Mat make sure to provide the Vec with the right layout. I am stuck with 3.3 until I find time to port my code to dmplex and to work on dmplex IO (last time I checked, some essential informations were lost when using the VTS file format). The sieve implementation DMGetLocal/GlobalVector calls VecSetFromOptions. It should be easy to patch now that I know how to get the proper Vec type. Blaise > > > >> >> Blaise >> >> -- >> Department of Mathematics and Center for Computation & Technology >> Louisiana State University, Baton Rouge, LA 70803, USA >> Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin -- Department of Mathematics and Center for Computation & Technology Louisiana State University, Baton Rouge, LA 70803, USA Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin From bsmith at mcs.anl.gov Wed Jan 15 22:27:05 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 15 Jan 2014 22:27:05 -0600 Subject: [petsc-users] printing help In-Reply-To: <10AB17F9-5BB8-4099-9C3F-50B8C81E9A5E@lsu.edu> References: <093EA655-513E-4F09-A0CA-7C2ECD0EA64B@lsu.edu> <56B89114-8D26-48FE-976D-279963BF2881@mcs.anl.gov> <87vbxk6fm0.fsf@jedbrown.org> <3A0C27FB-B7D0-49D4-9460-DBF19E16CD35@mcs.anl.gov> <35F09BE9-0785-43CF-83E8-0D039C21A6CA@lsu.edu> <10AB17F9-5BB8-4099-9C3F-50B8C81E9A5E@lsu.edu> Message-ID: <082BCAFC-F30D-4E4F-BB68-1EA23E81D0C2@mcs.anl.gov> On Jan 15, 2014, at 9:58 PM, Blaise A Bourdin wrote: > > On Jan 15, 2014, at 8:00 PM, Barry Smith wrote: > >> >> On Jan 15, 2014, at 6:56 PM, Blaise A Bourdin wrote: >> >>> >>> On Jan 15, 2014, at 5:26 PM, Barry Smith wrote: >>> >>>> >>>> On Jan 15, 2014, at 4:32 PM, Jed Brown wrote: >>>> >>>>> Barry Smith writes: >>>>>> To change this we would need to introduce a way of tracking >>>>>> alreadyprinted per class and per prefix instead of per object. It >>>>>> is unlikely we will change this. We recommend not using >>>>>> VecSetFromOptions() and MatSetFromOptions() in real applications >>>>> >>>>> We really have to do something about the repeated Vec and Mat help when >>>>> there is no prefix. This is by far the most important case. >>>> >>>> Hmm, do we even want people calling VecSetFromOptions() and MatSetFromOptions()? Especially for more than 1 or 2 ?master? items which will have different prefixes anyways. I don?t think we want calls to VecSetFromOptions() and MatSetFromOptions() from within other PETSc classes (except for possible a single master item) that is controlled from for example a DM. >>> >>> That makes a lot of sense, but when Vecs are created from a Mat or a DM, the call to VecSetFromOptions serves a purpose. In particular, it does the call to VecSetType. How do I get the VecType from a DM? >> >> DMSet/GetMatType() and DMSet/GetVecType() -dm_mat_type -dm_vec_type note that these will only print one message for each dm. >> >> Note also that if you have a SNES, KSP, PC, or Mat lying around it is better call KSPGetVecs() or MatGetVecs() instead of using VecCreate() since the KSP or Mat make sure to provide the Vec with the right layout. > > I am stuck with 3.3 until I find time to port my code to dmplex and to work on dmplex IO (last time I checked, some essential informations were lost when using the VTS file format). > The sieve implementation DMGetLocal/GlobalVector calls VecSetFromOptions. %^$&$%^$ Matt :-) > It should be easy to patch now that I know how to get the proper Vec type. > > Blaise > >> >> >> >>> >>> Blaise >>> >>> -- >>> Department of Mathematics and Center for Computation & Technology >>> Louisiana State University, Baton Rouge, LA 70803, USA >>> Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin > > -- > Department of Mathematics and Center for Computation & Technology > Louisiana State University, Baton Rouge, LA 70803, USA > Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin From triou at cea.fr Thu Jan 16 04:11:56 2014 From: triou at cea.fr (Projet_TRIOU) Date: Thu, 16 Jan 2014 11:11:56 +0100 Subject: [petsc-users] MatAssemblyEnd hangs during a parallel calculation with PETSc>3.3 In-Reply-To: <9B7118DC-6894-4E1E-8137-4456D2150D47@mcs.anl.gov> References: <52D677C5.90204@cea.fr> <9B7118DC-6894-4E1E-8137-4456D2150D47@mcs.anl.gov> Message-ID: <52D7B06C.90107@cea.fr> Sorry a typo, it is really MatMPISBAIJSetPreallocation() Yes, I call MatMPISBAIJSetPreallocation() on ALL processes and sometimes a local part of the matrix has zero rows. It worked well with Petsc 3.3 and before in this particular case. Sorry, it will difficult to me to send you the whole code to reproduce the problem. May be we could reproduce the hang with an example test of PETSc ? Pierre > Hmm, sometimes you talk about MatMPIAIJSetPreallocation() and sometimes MatMPISBAIJSetPreallocation() which one is it? > > If a process has zero rows that should not affect the nonew variable. > > It is crucial the the SetPreallocation routines be called on ALL processes that share the matrix, even if they have zero rows, but it shouldn?t matter what the values are for a matrix with zero rows. > > Can you send use your test case so we can track down the problem? > > Barry > > > > On Jan 15, 2014, at 5:57 AM, Projet_TRIOU wrote: > >> Hi all, >> >> I switched from PETSc 3.3 to PETSc 3.4.3 and all was fine except for >> one of my test case on 3 processors where one processor was >> dealing an empty local part of the global matrix. >> >> My code hangs just during the call at MatAssemblyEnd: >> >> ierr = MatMPIAIJSetPreallocation(MatricePetsc, PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); >> ... >> ierr = MatAssemblyEnd(MatricePetsc, MAT_FINAL_ASSEMBLY); >> >> When I debugged, I notice on the empty processor, that in >> src/mat/impls/aij/mpi/mpiaij.c: >> >> if (!((Mat_SeqAIJ*)aij->B->data)->nonew) { >> ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); >> if (mat->was_assembled && !other_disassembled) { >> ierr = MatDisAssemble_MPIAIJ(mat);CHKERRQ(ierr); >> } >> >> ((Mat_SeqAIJ*)aij->B->data)->nonew was 0 on the "empty" processor >> and -2 on the 2 others... >> >> I bypassed my problem with a different call to MatMPIAIJSetPreallocation(): >> >> if (nb_rows==0) // Local matrix is empty >> ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, 0, NULL, 0, NULL); >> else >> ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); >> >> Now, it runs well. So I don't know if it is a PETSc regression or if I was abusively >> calling MatMPISBAIJSetPreallocation with d_nnz/o_nnz empty arrays.... >> >> Thanks, >> >> Pierre >> -- *Trio_U support team* Marthe ROUX (Saclay) Pierre LEDAC (Grenoble) -------------- next part -------------- An HTML attachment was scrubbed... URL: From billingsjj at ornl.gov Thu Jan 16 07:55:19 2014 From: billingsjj at ornl.gov (Jay J. Billings) Date: Thu, 16 Jan 2014 08:55:19 -0500 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> References: <52D6DDFA.2010801@ornl.gov> <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> Message-ID: <52D7E4C7.6050604@ornl.gov> Thanks very much Barry. I'll check it out. Jay On 01/15/2014 09:35 PM, Barry Smith wrote: > This is now fixed in master and next > > On Jan 15, 2014, at 4:06 PM, Barry Smith wrote: > >> Jay, >> >> This is our bug. We?ll need to figure out the fix and get back to you. >> >> Barry >> >> On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: >> >>> Everyone, >>> >>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. >>> >>> Jay >>> >>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >>> [0]PETSC ERROR: Arguments are incompatible! >>> [1]PETSC ERROR: Arguments are incompatible! >>> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >>> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [1]PETSC ERROR: See docs/index.html for manual pages. >>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>> >>> -- >>> Jay Jay Billings >>> Oak Ridge National Laboratory >>> Twitter Handle: @jayjaybillings >>> -- Jay Jay Billings Oak Ridge National Laboratory Twitter Handle: @jayjaybillings From jed at jedbrown.org Thu Jan 16 08:12:59 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 16 Jan 2014 06:12:59 -0800 Subject: [petsc-users] MatAssemblyEnd hangs during a parallel calculation with PETSc>3.3 In-Reply-To: <52D7B06C.90107@cea.fr> References: <52D677C5.90204@cea.fr> <9B7118DC-6894-4E1E-8137-4456D2150D47@mcs.anl.gov> <52D7B06C.90107@cea.fr> Message-ID: <8738ko582c.fsf@jedbrown.org> Projet_TRIOU writes: > Sorry a typo, it is really MatMPISBAIJSetPreallocation() > > Yes, I call MatMPISBAIJSetPreallocation() on ALL processes and > sometimes a local part of the matrix has zero rows. It worked well > with Petsc 3.3 and before in this particular case. I believe this is the relevant conditional: if (nz >= 0 || nnz) realalloc = PETSC_TRUE; Instead of this: if (nb_rows==0) // Local matrix is empty ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, 0, NULL, 0, NULL); else ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, PETSC_DEFAULT, d_nnz.addr(), PETSC_DEFAULT, o_nnz.addr()); can you just call the following? ierr = MatMPISBAIJSetPreallocation(MatricePetsc, block_size_, 0, d_nnz.addr(), 0, o_nnz.addr()); If you are passing an nnz array (can be empty if there are zero rows), we will trust that. PETSC_DEFAULT is only intended to be used if you don't pass an array, though we're currently being tolerant by ignoring it if the array is non-NULL. The problem arises because we can't tell the difference between a zero-length semantically-meaningful array and an "I'm not passing this argument" NULL. Is this something we can fix in the documentation or should we guard in the code? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Thu Jan 16 08:24:12 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 08:24:12 -0600 Subject: [petsc-users] DMPlexCreateGmsh In-Reply-To: References: Message-ID: On Sun, Jan 12, 2014 at 7:37 PM, Gorman, Gerard J wrote: > Hi Matt > > First - really sorry for having inflicted this on you. I agree that > there are many problems with the format and it?s not like the world needs a > new file format. I only happened to use it for a case where there was an > existing toolchain?which I?m now rewriting anyhow. > > What is your current least detested file format for FEM that plays > nicely with DMPlex? Exodus II? > ExodusII we can read, and it maintains all the markers correctly, etc. It is currently my favorite. > Dharmendar - you might just want to write a simple translation script if > you are locked into gmsh for some reason. It is also a pain that the format > does not work with paraview and other common tools out of the box. > If you need Gmsh, I will get it working, it just may take a little while to sort out. You can send me small samples to test with. Thanks, Matt > Cheers > Gerard > > > On 11 Jan 2014, at 01:14, Matthew Knepley wrote: > > On Fri, Jan 10, 2014 at 3:44 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> wrote: > >> Hello, >> I have a question and feature request regarding DMPlexCreateGmsh. >> >> Gmsh, mesh format outputs, physical regions in the mesh as >> For example in the a particular 2 d mesh with eight physical regions >> it may look like the one below >> $PhysicalNames >> 8 >> 1 1 "RegionName1" >> 1 2 "RegionName2" >> 1 3 "RegionName3" >> 2 4 "RegionName4" >> 2 5 "RegionName5" >> 2 6 "RegionName6" >> 2 7 "RegionName7" >> 2 8 "RegionName8" >> $EndPhysicalNames >> >> It would be nice to have the DMPLexCreateGmsh process this information. >> >> The first number in each row of name is the topological dimension (tdim), >> >> If the code can group all the regions with dimension < mesh dimension >> (meshDim) as "Boundary" and all regions with dimension = >> meshDimension as "Region" >> >> Gmsh outputs (if requested) the lower dimension cells in regions with >> tdim < meshDim. If interpolate mesh is enabled, i would like to have >> cells of boundary region, which in the above example will be lines and >> points, included in the boundary strata with global numbering for the >> facets. >> > > I really hate GMsh right now. The format is a complete cluster of > idiocy. They allow > outputting facets as separate lower-dimensional cells, unconnected to the > original > cell, so we would have to initiate a search for every insertion. Not to > mention that sizes > are not declared up front so that we have to run through the file in > multiple passes. I > really really hate these guys. Is there an overwhelming reason to waste my > time messing > around with a format designed by the mentally infirm? > > I am willing to listen to reason, but reading Gmsh files would make > anyone unreasonably angry. > > Matt > > >> This ways the total number of Cells in the mesh will be : NumNodes + >> NumLines+ NumTriangles or NumNodes+ NumTriangles (if interpolate is >> off) >> >> >> In the Current implementation, correct me if i am wrong, I see the the >> total number of cells = numNodes + (some Lines which are elements of >> the lower dimensional regions) + numTriangles >> >> >> Thanks >> Reddy >> >> >> -- >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Thu Jan 16 08:28:34 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 16 Jan 2014 06:28:34 -0800 Subject: [petsc-users] DMPlexCreateGmsh In-Reply-To: References: Message-ID: <87zjmw3srx.fsf@jedbrown.org> Matthew Knepley writes: > On Sun, Jan 12, 2014 at 7:37 PM, Gorman, Gerard J > wrote: > >> Hi Matt >> >> First - really sorry for having inflicted this on you. I agree that >> there are many problems with the format and it?s not like the world needs a >> new file format. I only happened to use it for a case where there was an >> existing toolchain?which I?m now rewriting anyhow. >> >> What is your current least detested file format for FEM that plays >> nicely with DMPlex? Exodus II? >> > > ExodusII we can read, and it maintains all the markers correctly, etc. It > is currently my favorite. CGNS is another alternative that is implemented (though less mature in PETSc). Note that CGNS is more typically finite volume CFD oriented, though it can also be used for FEM. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From song.gao2 at mail.mcgill.ca Thu Jan 16 10:04:55 2014 From: song.gao2 at mail.mcgill.ca (Song Gao) Date: Thu, 16 Jan 2014 11:04:55 -0500 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> <87fvp6wgu2.fsf@jedbrown.org> <52C6FEE7.8060005@newmerical.com> <4CAC0C20-40D3-408C-A98C-2162AD378ACB@mcs.anl.gov> Message-ID: Thank you. I have found the bug in my codes. SNESSetFunction and MatMFFDSetFunction expect functions with different interfaces, but I passed the same function to them. On Wed, Jan 8, 2014 at 11:52 PM, Barry Smith wrote: > > I suspect the problem is here: > > > > > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, > > > > @ ierrpet) > > In fact I am surprised it didn?t crash at this line, since we don?t > have code to handle the PETSC_NULL_INTEGER > > Try adding the > > > call > SNESGetFunction(snes,f,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,ierrpet); > > before the > > > MatMFFDSetBase(myJctx%mf,x,f,ierrpet); > > that I suggested before. > > Does that change anything? > > If you still get different values here is how I would debug it next > > 1) 1 process > > 2) run each version separately in the debugger (you can use the options > -start_in_debugger noxterm ) > > 3) put a break point in MatMult(). In most debuggers you just use > > b MatMult > > 4) then type c to continue > > 5) when it stops in MatMult do > > VecView(x,0) > > 6) make sure both versions produce the exact same numbers (do they?) > > 7) then type next several times until it gets to the > PetscFunctionReturn(0) line > > 8) do > > VecView(y,0) > > again are both answers identical? By all logic they will be different > since the norms you print are different. > > If (6) produces the same numbers but (8) produces different ones then put > a break point in MatMult_MFFD() > and call VecView() on ctx->current_u ctx->current_f and a. For both > versions they should be the same. Are they? > > Barry > > > > On Jan 8, 2014, at 10:47 AM, Song Gao wrote: > > > Dear Barry, > > > > Thanks for reply. I basically implemented your codes. Then I have two > > questions. > > > > The first is I'm working on Fortran. So I can't use MatShellSetContext to > > set the structure. Therefore I let the variable I want to set, MyJctx, to > > be global. Is there other way to do that? > > > > The second question is I did some tests. let the D vec to be zero, I > > expect the code which I explicit set the matrix-free jacobian and the > code > > which I use runtime option -snes_mf give the same residual history. But > it > > doesn't. > > > > Here is the histories for > > > > -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 > -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type > none -snes_view -snes_linesearch_type basic > > > > 0 SNES Function norm 4.272952196300e-02 > > > > 0 KSP Residual norm 4.272952196300e-02 > > 1 KSP Residual norm 4.234712668718e-02 > > 2 KSP Residual norm 3.683301946690e-02 > > > > 3 KSP Residual norm 3.465586805169e-02 > > > > 4 KSP Residual norm 3.452667066800e-02 > > 5 KSP Residual norm 3.451739518719e-02 > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 1 SNES Function norm 4.203973403992e-02 > > > > 0 KSP Residual norm 4.203973403992e-02 > > > > 1 KSP Residual norm 4.203070641961e-02 > > 2 KSP Residual norm 4.202387940443e-02 > > 3 KSP Residual norm 4.183739347023e-02 > > 4 KSP Residual norm 4.183629424897e-02 > > > > 5 KSP Residual norm 4.159456024825e-02 > > > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 2 SNES Function norm 4.200901009970e-02 > > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 > > > > > > Here is the histories for > > -snes_mf -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it > 2 -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 > -pc_type none -snes_view -snes_linesearch_type basic > > > > > > 0 SNES Function norm 4.272952196300e-02 > > 0 KSP Residual norm 4.272952196300e-02 > > 1 KSP Residual norm 4.270267664569e-02 > > 2 KSP Residual norm 3.690026921954e-02 > > > > 3 KSP Residual norm 3.681740616743e-02 > > > > 4 KSP Residual norm 3.464377294985e-02 > > 5 KSP Residual norm 3.464376048536e-02 > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 1 SNES Function norm 3.461633424373e-02 > > > > 0 KSP Residual norm 3.461633424373e-02 > > > > 1 KSP Residual norm 3.461632119472e-02 > > 2 KSP Residual norm 3.406130197963e-02 > > 3 KSP Residual norm 3.406122155751e-02 > > 4 KSP Residual norm 3.403393397001e-02 > > > > 5 KSP Residual norm 3.403367748538e-02 > > > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 2 SNES Function norm 3.403367847002e-02 > > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 > > > > > > We can see that at 0 SNES 1 KSP step, the residual norms are different. > Did I do something wrong here? > > > > The codes are like > > > > type MyJContext > > Mat mf > > Vec D > > Vec work > > end type MyJContext > > > > c > > > > type(MyJContext) myJctx > > > > > -------------------------------------------------------------------------- > > call SNESCreate(PETSC_COMM_WORLD, snes, ierpetsc) > > call SNESSetFunction(snes, pet_rhs_snes, flowsolrhs, ctx, > > > > @ ierpetsc) > > > > c > > call MatCreateSNESMF(snes, myJctx%mf, ierpetsc) > > call MatMFFDSetFunction(myJctx%mf, flowsolrhs, ctx, ierpetsc) > > call VecDuplicate(pet_solu_snes, myJctx%D, ierpetsc) > > > > call VecDuplicate(pet_solu_snes, myJctx%work, ierpetsc) > > > > call VecSet(myJctx%D, 0.0D-3, ierpetsc) > > call MatCreateShell(PETSC_COMM_WORLD, pet_nfff, pet_nfff, > > @ PETSC_DETERMINE, PETSC_DETERMINE, ctx, myJ, ierpetsc) > > > > call MatShellSetOperation(myJ, MATOP_MULT, mymultply, > > > > @ ierpetsc) > > call SNESSetJacobian(snes, myJ, pet_mat_pre, > > @ flowsoljac, ctx, ierpetsc) > > > > > -------------------------------------------------------------------------- > > > > > > subroutine mymultply ( A, x, y, ierpet) > > Mat :: A > > Vec :: x, y > > PetscErrorCode :: ierpet > > c > > call MatMult(myJctx%mf,x,y, ierpet) > > c > > end > > > -------------------------------------------------------------------------- > > > > > > subroutine flowsoljac ( snes, pet_solu_snes, pet_mat_snes, > > @ pet_mat_pre, flag, ctxx, ierrpet ) > > > > c explicitly assemble pet_mat_pre matrix here > > c ......... > > c ......... > > > > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, > > > > @ ierrpet) > > > > end > > > > > > > > > > On Fri, Jan 3, 2014 at 6:46 PM, Barry Smith wrote: > > > > Dario, > > > > Your discussion below (SOR, ILU(200)) seems to imply that you are > providing some actual explicit representation of the Jacobian, not just > doing something completely matrix free. Is this correct? But the PETSc > MatMFFD() is completely matrix free, it provides only a matrix-vector > product and no access to the matrix entries, hence I am slightly confused. > > > > If you wish to use for the Jacobian something like D + J and do it > completely matrix free then rather than than monkeying with ?changing the > function? I would > > use the ?correct" function to compute J x using matrix free multiply > and then apply the D to as an additional operation. Hence you would do > something like > > > > typedef struct { /* data structure to store the usual matrix free > matrix and the additional diagonal matrix */ > > Mat mf; > > Vec D; > > Vec work; > > } MyJContext; > > > > MyJContext myJctx; > > > > MatCreateSNESMF(SNES,&myJctx.mf); /* create the usual MFFD > matrix using the real nonlinear function */ > > > MatMFFDSetFunction(myJctx.mf,yournonlinearfunction,nonlinearfunctionctx); > > VecCreate(comm,&myJctx.D); > > /* set the correct sizes for D and fill up with your diagonal > matrix entries */ > > VecDuplicate(&myJctx.D,&myJCtx.work); > > MatCreateShell(comm,?. &myJ); > > MatShellSetOperation(myJ,MATOP_MULT, mymultiply); > > MatShellSetContext(myJ,&myJctx); > > SNESSetJacobian(snes,myJ,myJ, myJFunction,NULL); > > > > where > > > > PetscErrorCode mymultply(Mat A,Vec x,Vec y) /* computes y = J x > + D x > > { > > MyJContext *myJctx; > > > > MatShellGetContext(A,&myJctx); > > MatMult(myJctx->mf,x,y); > > VecPointwiseMult(myJctx->D,x,myJctx->work); > > VecAXPY(y,1.myJctx->work); > > } > > > > and > > > > PetscErrorCode myJFunction(SNES snes,Vec x,Mat *A,Mat > *B,MatStructure *str,void* ctx) > > > > /* this is called for each new ?Jacobian? to set the point at > which it is computed */ > > { > > MyJContext *myJctx; > > Vec f; > > MatShellGetContext(*A,&myJctx); > > SNESGetFunction(snes,&f); > > MatMFFDSetBase(myJctx->mf,x,f); > > > > /* change the D entries if they depend on the current solution > etc */ > > return 0; > > } > > > > Sorry now that I have typed it out it looks a bit more > complicated then it really is. It does what you want but without any > trickery or confusing code. > > > > But, of course, since it is completely matrix free you cannot use > SOR with it. Of course by making D suitably large you can make it as well > conditioned as you want and thus get rapid linear convergence (though that > may slow down or ruin the nonlinear convergence). > > > > Hope this helps, > > > > Barry > > > > > > > > > > > > On Jan 3, 2014, at 12:18 PM, Dario Isola > wrote: > > > > > Dear, Barry and Jed, > > > > > > Thanks for your replies. > > > > > > We understand your doubts, so let me to put our question into context. > In CFD it is standard practice to solve non-linear equations of > conservation for steady flows by means of a inexact Newton method. The > original Jacobian matrix is modified by adding terms on the diagonal which > are proportional to the Courant number and to the lumped mass matrix. This > allows us to obtain two things, "relax" the solution update and increase > the diagonal dominance of the matrix itself. > > > > > > The latter is key when simple preconditioners are adopted, in our case > point Jacobi or SOR. Indeed, if the original matrix was to be used, the > GMRES method would converge only on very regular meshes and only when > adopting ILU preconditioners with a very high level of fill-in. As result a > higher number of non-linear iterations is traded with a simpler linear > system to be solved. > > > > > > While exploring the SNES+MF capabilities we found out that we could > successfully solve the linear system only with ILU(200) or so. Of course we > do not want to touch the function used to evaluate the residual, which > determines the final solution. However we think that a suitable > modification of the function that Petsc differences to compute the matrix > vector product would allow us to obtain a behavior similar to the inexact > Newton method. > > > > > > Best regards, > > > Dario > > > > > > > > > On 01/03/2014 12:32 PM, Song Gao wrote: > > >> > > >> > > >> ---------- Forwarded message ---------- > > >> From: Jed Brown > > >> Date: Thu, Jan 2, 2014 at 10:20 AM > > >> Subject: Re: [petsc-users] SNESSetFunction and MatMFFDSetFunction > > >> To: Song Gao , Barry Smith < > bsmith at mcs.anl.gov> > > >> Cc: petsc-users > > >> > > >> > > >> Song Gao writes: > > >> > > >> > Thanks, Barry. > > >> > > > >> > I mean 2) providing a function that I want PETSc to difference to > evaluate > > >> > the matrix vector product. > > >> > > > >> > I want to make a slight modification of the matrix after PETSc > evaluate the > > >> > matrix vector product. > > >> > > >> Performing a matrix-vector product is not supposed to modify the > matrix. > > >> It's unlikely that you really want this. > > >> > > >> > > >> On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith > wrote: > > >> > > >> On Jan 1, 2014, at 11:09 AM, Song Gao > wrote: > > >> > > >> > Dear all, > > >> > > > >> > Happy new year! > > >> > > > >> > I'm using the matrix-free method to solve NS equations. I call the > SNESSetFunction to set the RHS function. I think SNES also uses that RHS > function to evaluate the matrix vector product. > > >> > > >> Yes, PETSc differences this function to evaluate the matrix vector > product. > > >> > > >> > > > >> > But I want to set one function to evaluate the residual, and > another different function to evaluate the matrix vector product. > > >> > > >> Are you providing a function that > > >> > > >> 1) actually evaluates the matrix vector product or are you > > >> > > >> 2) providing a function that you want PETSc to difference to > evaluate the matrix vector product? > > >> > > >> > How can I do that? Does MatMFFDSetFunction do this job? > > >> > > >> For 2) yes, but if the function you provide is different than the > function provided with SNESSetFunction then the matrix-vector product > obtained from differencing it will not be ?correct? Jacobian for the > SNESSetFunction() you are providing so I don?t see why you would do it. > > >> > > >> For 1) you should use MatCreateShell() and > MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to > SNESSetJacobian(), then PETSc will use that ?matrix? to do its > matrix-vector products. > > >> > > >> Barry > > >> > > >> > > >> > > >> > > > >> > Any suggestion is appreciated. Thank you. > > >> > > > >> > > > >> > Song > > >> > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From song.gao2 at mail.mcgill.ca Thu Jan 16 10:49:15 2014 From: song.gao2 at mail.mcgill.ca (Song Gao) Date: Thu, 16 Jan 2014 11:49:15 -0500 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> <87fvp6wgu2.fsf@jedbrown.org> <52C6FEE7.8060005@newmerical.com> <4CAC0C20-40D3-408C-A98C-2162AD378ACB@mcs.anl.gov> Message-ID: I was looking at the example of MatMFFDSetFunction on website. http://www.mcs.anl.gov/petsc/petsc-current/src/snes/examples/tutorials/ex22.c.html I think, the line 312, the last snes should be ctx. 312: MatMFFDSetFunction (*A,(PetscErrorCode (*)(void*,Vec ,Vec ))SNESComputeFunction ,snes); On Thu, Jan 16, 2014 at 11:04 AM, Song Gao wrote: > Thank you. > > I have found the bug in my codes. SNESSetFunction and MatMFFDSetFunction > expect functions with different interfaces, but I passed the same function > to them. > > > On Wed, Jan 8, 2014 at 11:52 PM, Barry Smith wrote: > >> >> I suspect the problem is here: >> >> > >> > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, >> > >> > @ ierrpet) >> >> In fact I am surprised it didn?t crash at this line, since we don?t >> have code to handle the PETSC_NULL_INTEGER >> >> Try adding the >> >> > call >> SNESGetFunction(snes,f,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,ierrpet); >> >> before the >> >> > MatMFFDSetBase(myJctx%mf,x,f,ierrpet); >> >> that I suggested before. >> >> Does that change anything? >> >> If you still get different values here is how I would debug it next >> >> 1) 1 process >> >> 2) run each version separately in the debugger (you can use the options >> -start_in_debugger noxterm ) >> >> 3) put a break point in MatMult(). In most debuggers you just use >> >> b MatMult >> >> 4) then type c to continue >> >> 5) when it stops in MatMult do >> >> VecView(x,0) >> >> 6) make sure both versions produce the exact same numbers (do they?) >> >> 7) then type next several times until it gets to the >> PetscFunctionReturn(0) line >> >> 8) do >> >> VecView(y,0) >> >> again are both answers identical? By all logic they will be different >> since the norms you print are different. >> >> If (6) produces the same numbers but (8) produces different ones then put >> a break point in MatMult_MFFD() >> and call VecView() on ctx->current_u ctx->current_f and a. For both >> versions they should be the same. Are they? >> >> Barry >> >> >> >> On Jan 8, 2014, at 10:47 AM, Song Gao wrote: >> >> > Dear Barry, >> > >> > Thanks for reply. I basically implemented your codes. Then I have two >> > questions. >> > >> > The first is I'm working on Fortran. So I can't use MatShellSetContext >> to >> > set the structure. Therefore I let the variable I want to set, MyJctx, >> to >> > be global. Is there other way to do that? >> > >> > The second question is I did some tests. let the D vec to be zero, I >> > expect the code which I explicit set the matrix-free jacobian and the >> code >> > which I use runtime option -snes_mf give the same residual history. But >> it >> > doesn't. >> > >> > Here is the histories for >> > >> > -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 >> -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type >> none -snes_view -snes_linesearch_type basic >> > >> > 0 SNES Function norm 4.272952196300e-02 >> > >> > 0 KSP Residual norm 4.272952196300e-02 >> > 1 KSP Residual norm 4.234712668718e-02 >> > 2 KSP Residual norm 3.683301946690e-02 >> > >> > 3 KSP Residual norm 3.465586805169e-02 >> > >> > 4 KSP Residual norm 3.452667066800e-02 >> > 5 KSP Residual norm 3.451739518719e-02 >> > Linear solve did not converge due to DIVERGED_ITS iterations 5 >> > 1 SNES Function norm 4.203973403992e-02 >> > >> > 0 KSP Residual norm 4.203973403992e-02 >> > >> > 1 KSP Residual norm 4.203070641961e-02 >> > 2 KSP Residual norm 4.202387940443e-02 >> > 3 KSP Residual norm 4.183739347023e-02 >> > 4 KSP Residual norm 4.183629424897e-02 >> > >> > 5 KSP Residual norm 4.159456024825e-02 >> > >> > Linear solve did not converge due to DIVERGED_ITS iterations 5 >> > 2 SNES Function norm 4.200901009970e-02 >> > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 >> > >> > >> > Here is the histories for >> > -snes_mf -snes_monitor -ksp_max_it 5 -snes_converged_reason >> -snes_max_it 2 -ksp_converged_reason -ksp_monitor >> -snes_max_linear_solve_fail 300 -pc_type none -snes_view >> -snes_linesearch_type basic >> > >> > >> > 0 SNES Function norm 4.272952196300e-02 >> > 0 KSP Residual norm 4.272952196300e-02 >> > 1 KSP Residual norm 4.270267664569e-02 >> > 2 KSP Residual norm 3.690026921954e-02 >> > >> > 3 KSP Residual norm 3.681740616743e-02 >> > >> > 4 KSP Residual norm 3.464377294985e-02 >> > 5 KSP Residual norm 3.464376048536e-02 >> > Linear solve did not converge due to DIVERGED_ITS iterations 5 >> > 1 SNES Function norm 3.461633424373e-02 >> > >> > 0 KSP Residual norm 3.461633424373e-02 >> > >> > 1 KSP Residual norm 3.461632119472e-02 >> > 2 KSP Residual norm 3.406130197963e-02 >> > 3 KSP Residual norm 3.406122155751e-02 >> > 4 KSP Residual norm 3.403393397001e-02 >> > >> > 5 KSP Residual norm 3.403367748538e-02 >> > >> > Linear solve did not converge due to DIVERGED_ITS iterations 5 >> > 2 SNES Function norm 3.403367847002e-02 >> > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 >> > >> > >> > We can see that at 0 SNES 1 KSP step, the residual norms are different. >> Did I do something wrong here? >> > >> > The codes are like >> > >> > type MyJContext >> > Mat mf >> > Vec D >> > Vec work >> > end type MyJContext >> > >> > c >> > >> > type(MyJContext) myJctx >> > >> > >> -------------------------------------------------------------------------- >> > call SNESCreate(PETSC_COMM_WORLD, snes, ierpetsc) >> > call SNESSetFunction(snes, pet_rhs_snes, flowsolrhs, ctx, >> > >> > @ ierpetsc) >> > >> > c >> > call MatCreateSNESMF(snes, myJctx%mf, ierpetsc) >> > call MatMFFDSetFunction(myJctx%mf, flowsolrhs, ctx, ierpetsc) >> > call VecDuplicate(pet_solu_snes, myJctx%D, ierpetsc) >> > >> > call VecDuplicate(pet_solu_snes, myJctx%work, ierpetsc) >> > >> > call VecSet(myJctx%D, 0.0D-3, ierpetsc) >> > call MatCreateShell(PETSC_COMM_WORLD, pet_nfff, pet_nfff, >> > @ PETSC_DETERMINE, PETSC_DETERMINE, ctx, myJ, ierpetsc) >> > >> > call MatShellSetOperation(myJ, MATOP_MULT, mymultply, >> > >> > @ ierpetsc) >> > call SNESSetJacobian(snes, myJ, pet_mat_pre, >> > @ flowsoljac, ctx, ierpetsc) >> > >> > >> -------------------------------------------------------------------------- >> > >> > >> > subroutine mymultply ( A, x, y, ierpet) >> > Mat :: A >> > Vec :: x, y >> > PetscErrorCode :: ierpet >> > c >> > call MatMult(myJctx%mf,x,y, ierpet) >> > c >> > end >> > >> -------------------------------------------------------------------------- >> > >> > >> > subroutine flowsoljac ( snes, pet_solu_snes, pet_mat_snes, >> > @ pet_mat_pre, flag, ctxx, ierrpet ) >> > >> > c explicitly assemble pet_mat_pre matrix here >> > c ......... >> > c ......... >> > >> > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, >> > >> > @ ierrpet) >> > >> > end >> > >> > >> > >> > >> > On Fri, Jan 3, 2014 at 6:46 PM, Barry Smith wrote: >> > >> > Dario, >> > >> > Your discussion below (SOR, ILU(200)) seems to imply that you are >> providing some actual explicit representation of the Jacobian, not just >> doing something completely matrix free. Is this correct? But the PETSc >> MatMFFD() is completely matrix free, it provides only a matrix-vector >> product and no access to the matrix entries, hence I am slightly confused. >> > >> > If you wish to use for the Jacobian something like D + J and do it >> completely matrix free then rather than than monkeying with ?changing the >> function? I would >> > use the ?correct" function to compute J x using matrix free multiply >> and then apply the D to as an additional operation. Hence you would do >> something like >> > >> > typedef struct { /* data structure to store the usual matrix >> free matrix and the additional diagonal matrix */ >> > Mat mf; >> > Vec D; >> > Vec work; >> > } MyJContext; >> > >> > MyJContext myJctx; >> > >> > MatCreateSNESMF(SNES,&myJctx.mf); /* create the usual MFFD >> matrix using the real nonlinear function */ >> > >> MatMFFDSetFunction(myJctx.mf,yournonlinearfunction,nonlinearfunctionctx); >> > VecCreate(comm,&myJctx.D); >> > /* set the correct sizes for D and fill up with your diagonal >> matrix entries */ >> > VecDuplicate(&myJctx.D,&myJCtx.work); >> > MatCreateShell(comm,?. &myJ); >> > MatShellSetOperation(myJ,MATOP_MULT, mymultiply); >> > MatShellSetContext(myJ,&myJctx); >> > SNESSetJacobian(snes,myJ,myJ, myJFunction,NULL); >> > >> > where >> > >> > PetscErrorCode mymultply(Mat A,Vec x,Vec y) /* computes y = J x >> + D x >> > { >> > MyJContext *myJctx; >> > >> > MatShellGetContext(A,&myJctx); >> > MatMult(myJctx->mf,x,y); >> > VecPointwiseMult(myJctx->D,x,myJctx->work); >> > VecAXPY(y,1.myJctx->work); >> > } >> > >> > and >> > >> > PetscErrorCode myJFunction(SNES snes,Vec x,Mat *A,Mat >> *B,MatStructure *str,void* ctx) >> > >> > /* this is called for each new ?Jacobian? to set the point at >> which it is computed */ >> > { >> > MyJContext *myJctx; >> > Vec f; >> > MatShellGetContext(*A,&myJctx); >> > SNESGetFunction(snes,&f); >> > MatMFFDSetBase(myJctx->mf,x,f); >> > >> > /* change the D entries if they depend on the current solution >> etc */ >> > return 0; >> > } >> > >> > Sorry now that I have typed it out it looks a bit more >> complicated then it really is. It does what you want but without any >> trickery or confusing code. >> > >> > But, of course, since it is completely matrix free you cannot >> use SOR with it. Of course by making D suitably large you can make it as >> well conditioned as you want and thus get rapid linear convergence (though >> that may slow down or ruin the nonlinear convergence). >> > >> > Hope this helps, >> > >> > Barry >> > >> > >> > >> > >> > >> > On Jan 3, 2014, at 12:18 PM, Dario Isola >> wrote: >> > >> > > Dear, Barry and Jed, >> > > >> > > Thanks for your replies. >> > > >> > > We understand your doubts, so let me to put our question into >> context. In CFD it is standard practice to solve non-linear equations of >> conservation for steady flows by means of a inexact Newton method. The >> original Jacobian matrix is modified by adding terms on the diagonal which >> are proportional to the Courant number and to the lumped mass matrix. This >> allows us to obtain two things, "relax" the solution update and increase >> the diagonal dominance of the matrix itself. >> > > >> > > The latter is key when simple preconditioners are adopted, in our >> case point Jacobi or SOR. Indeed, if the original matrix was to be used, >> the GMRES method would converge only on very regular meshes and only when >> adopting ILU preconditioners with a very high level of fill-in. As result a >> higher number of non-linear iterations is traded with a simpler linear >> system to be solved. >> > > >> > > While exploring the SNES+MF capabilities we found out that we could >> successfully solve the linear system only with ILU(200) or so. Of course we >> do not want to touch the function used to evaluate the residual, which >> determines the final solution. However we think that a suitable >> modification of the function that Petsc differences to compute the matrix >> vector product would allow us to obtain a behavior similar to the inexact >> Newton method. >> > > >> > > Best regards, >> > > Dario >> > > >> > > >> > > On 01/03/2014 12:32 PM, Song Gao wrote: >> > >> >> > >> >> > >> ---------- Forwarded message ---------- >> > >> From: Jed Brown >> > >> Date: Thu, Jan 2, 2014 at 10:20 AM >> > >> Subject: Re: [petsc-users] SNESSetFunction and MatMFFDSetFunction >> > >> To: Song Gao , Barry Smith < >> bsmith at mcs.anl.gov> >> > >> Cc: petsc-users >> > >> >> > >> >> > >> Song Gao writes: >> > >> >> > >> > Thanks, Barry. >> > >> > >> > >> > I mean 2) providing a function that I want PETSc to difference to >> evaluate >> > >> > the matrix vector product. >> > >> > >> > >> > I want to make a slight modification of the matrix after PETSc >> evaluate the >> > >> > matrix vector product. >> > >> >> > >> Performing a matrix-vector product is not supposed to modify the >> matrix. >> > >> It's unlikely that you really want this. >> > >> >> > >> >> > >> On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith >> wrote: >> > >> >> > >> On Jan 1, 2014, at 11:09 AM, Song Gao >> wrote: >> > >> >> > >> > Dear all, >> > >> > >> > >> > Happy new year! >> > >> > >> > >> > I'm using the matrix-free method to solve NS equations. I call the >> SNESSetFunction to set the RHS function. I think SNES also uses that RHS >> function to evaluate the matrix vector product. >> > >> >> > >> Yes, PETSc differences this function to evaluate the matrix >> vector product. >> > >> >> > >> > >> > >> > But I want to set one function to evaluate the residual, and >> another different function to evaluate the matrix vector product. >> > >> >> > >> Are you providing a function that >> > >> >> > >> 1) actually evaluates the matrix vector product or are you >> > >> >> > >> 2) providing a function that you want PETSc to difference to >> evaluate the matrix vector product? >> > >> >> > >> > How can I do that? Does MatMFFDSetFunction do this job? >> > >> >> > >> For 2) yes, but if the function you provide is different than >> the function provided with SNESSetFunction then the matrix-vector product >> obtained from differencing it will not be ?correct? Jacobian for the >> SNESSetFunction() you are providing so I don?t see why you would do it. >> > >> >> > >> For 1) you should use MatCreateShell() and >> MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to >> SNESSetJacobian(), then PETSc will use that ?matrix? to do its >> matrix-vector products. >> > >> >> > >> Barry >> > >> >> > >> >> > >> >> > >> > >> > >> > Any suggestion is appreciated. Thank you. >> > >> > >> > >> > >> > >> > Song >> > >> >> > > >> > >> > >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Thu Jan 16 14:17:20 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 16 Jan 2014 14:17:20 -0600 Subject: [petsc-users] DMPlexCreateGmsh In-Reply-To: <87zjmw3srx.fsf@jedbrown.org> References: <87zjmw3srx.fsf@jedbrown.org> Message-ID: Hello, Gmsh does not output mesh in exodus format. I tried hard to look for an open source mesher which i can use, i ended up with gmsh. If there is a better alternative i can switch. Currently i pre process the gmsh file in my fortran code before i create a dm object via createFromCellList. Is there an opensource mesh converter available which can take gmsh to exoduss, i could not find one. I tried writing one but the problem is, i have to first form all the edges/facets in the mesh and map them to the boundary before i can create the sidesets for the exodus. So, if it is possible, i will prefer to read my mesh via DMPLexcreateGmsh otherwise i can continue to use my code. Thank you All Reddy On Thu, Jan 16, 2014 at 8:28 AM, Jed Brown wrote: > Matthew Knepley writes: > >> On Sun, Jan 12, 2014 at 7:37 PM, Gorman, Gerard J >> wrote: >> >>> Hi Matt >>> >>> First - really sorry for having inflicted this on you. I agree that >>> there are many problems with the format and it?s not like the world needs a >>> new file format. I only happened to use it for a case where there was an >>> existing toolchain?which I?m now rewriting anyhow. >>> >>> What is your current least detested file format for FEM that plays >>> nicely with DMPlex? Exodus II? >>> >> >> ExodusII we can read, and it maintains all the markers correctly, etc. It >> is currently my favorite. > > CGNS is another alternative that is implemented (though less mature in > PETSc). Note that CGNS is more typically finite volume CFD oriented, > though it can also be used for FEM. -- ----------------------------------------------------- From knepley at gmail.com Thu Jan 16 14:34:33 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 14:34:33 -0600 Subject: [petsc-users] DMPlexCreateGmsh In-Reply-To: References: <87zjmw3srx.fsf@jedbrown.org> Message-ID: On Thu, Jan 16, 2014 at 2:17 PM, Dharmendar Reddy wrote: > Hello, > Gmsh does not output mesh in exodus format. I tried hard to > look for an open source mesher which i can use, i ended up with gmsh. > If there is a better alternative i can switch. > You could use --download-ctetgen which also meshes in 3D. I am not sure what else Gmsh provides. > Currently i pre process the gmsh file in my fortran code before i > create a dm object via createFromCellList. > > Is there an opensource mesh converter available which can take gmsh to > exoduss, i could not find one. I tried writing one but the problem is, > i have to first form all the edges/facets in the mesh and map them to > the boundary before i can create the sidesets for the exodus. > This at least is easy. If you have a cell-vertex mesh, you can call DMPlexInterpolate(dm, &idm); and get the edges/faces. > So, if it is possible, i will prefer to read my mesh via > DMPLexcreateGmsh otherwise i can continue to use my code. > We can try. What will probably happen is that the reader will be able to handle exactly what you need since the full format is a little crazy. Thanks, Matt > Thank you All > Reddy > > > On Thu, Jan 16, 2014 at 8:28 AM, Jed Brown wrote: > > Matthew Knepley writes: > > > >> On Sun, Jan 12, 2014 at 7:37 PM, Gorman, Gerard J > >> wrote: > >> > >>> Hi Matt > >>> > >>> First - really sorry for having inflicted this on you. I agree that > >>> there are many problems with the format and it?s not like the world > needs a > >>> new file format. I only happened to use it for a case where there was > an > >>> existing toolchain?which I?m now rewriting anyhow. > >>> > >>> What is your current least detested file format for FEM that plays > >>> nicely with DMPlex? Exodus II? > >>> > >> > >> ExodusII we can read, and it maintains all the markers correctly, etc. > It > >> is currently my favorite. > > > > CGNS is another alternative that is implemented (though less mature in > > PETSc). Note that CGNS is more typically finite volume CFD oriented, > > though it can also be used for FEM. > > > > -- > ----------------------------------------------------- > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From MAJones2 at mdanderson.org Thu Jan 16 14:35:49 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Thu, 16 Jan 2014 20:35:49 +0000 Subject: [petsc-users] Problems running ex12.c Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element -------------- next part -------------- An HTML attachment was scrubbed... URL: From billingsjj at ornl.gov Thu Jan 16 14:35:55 2014 From: billingsjj at ornl.gov (Jay Jay Billings) Date: Thu, 16 Jan 2014 15:35:55 -0500 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: <52D7E4C7.6050604@ornl.gov> References: <52D6DDFA.2010801@ornl.gov> <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> <52D7E4C7.6050604@ornl.gov> Message-ID: <52D842AB.3080105@ornl.gov> Hi Barry, It still fails in cd0e7f7. Error message below. Jay [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: Arguments are incompatible! [1]PETSC ERROR: Local size 7 not compatible with block size 13! [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Arguments are incompatible! [0]PETSC ERROR: Local size 7 not compatible with block size 13! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib [1]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib [0]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [1]PETSC ERROR: [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c [1]PETSC ERROR: [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c [1]PETSC ERROR: [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp On 01/16/2014 08:55 AM, Jay J. Billings wrote: > Thanks very much Barry. I'll check it out. > > Jay > > On 01/15/2014 09:35 PM, Barry Smith wrote: >> This is now fixed in master and next >> >> On Jan 15, 2014, at 4:06 PM, Barry Smith wrote: >> >>> Jay, >>> >>> This is our bug. We?ll need to figure out the fix and get back to you. >>> >>> Barry >>> >>> On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: >>> >>>> Everyone, >>>> >>>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. >>>> >>>> Jay >>>> >>>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>> [0]PETSC ERROR: Arguments are incompatible! >>>> [1]PETSC ERROR: Arguments are incompatible! >>>> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >>>> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>> [1]PETSC ERROR: See docs/index.html for manual pages. >>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>> >>>> -- >>>> Jay Jay Billings >>>> Oak Ridge National Laboratory >>>> Twitter Handle: @jayjaybillings >>>> From dharmareddy84 at gmail.com Thu Jan 16 14:36:07 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 16 Jan 2014 14:36:07 -0600 Subject: [petsc-users] request related to DMPlexComputeCellGeometryFVM Message-ID: Hello, I have a request related to cell geometry for FVM. I am working on implementing a solver for coupled electron hole transport problem in a semiconductor. For the descretization (see the link [1] below), i want to use the FVM which uses voronoi box around each node as the control volume. Current implementation of the ComputeCellGeometry, provide the centroid of the cell. Can i request for functionality similar to ComputeCellGeometry, which on call returns, the orthocenter and the area perpendiclar to each edge for flux computation ? Or any suggested references to look for geometry related routines. [1] http://www.iue.tuwien.ac.at/phd/triebl/node30.html Thanks Reddy From dharmareddy84 at gmail.com Thu Jan 16 14:41:48 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 16 Jan 2014 14:41:48 -0600 Subject: [petsc-users] Fixing a non Delaunay mesh Message-ID: Hello, I there a way to fix a non Delauny mesh via call to any DMPLex routine ? I am looking at this scenario. I calculate the orthocenter of each element. If i find that for some elements, the othocenter is outside the element, is there any way i can fix it via a call to DMPLEx routine or do i have to go back to the mesher and regenerate the mesh ? Thanks Reddy From knepley at gmail.com Thu Jan 16 14:47:58 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 14:47:58 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > Hello To Whom it Concerns, > > > > I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py > dim order dim 1 laplacian dim order dim 1 boundary > src/snes/examples/tutorials/ex12.h' > but getting the following error: > > > > $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 > laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h > Traceback (most recent call last): > File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in > > from FIAT.reference_element import default_simplex > ImportError: No module named FIAT.reference_element > I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 16 14:54:53 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 14:54:53 -0600 Subject: [petsc-users] request related to DMPlexComputeCellGeometryFVM In-Reply-To: References: Message-ID: On Thu, Jan 16, 2014 at 2:36 PM, Dharmendar Reddy wrote: > Hello, > I have a request related to cell geometry for FVM. I am > working on implementing a solver for coupled electron hole transport > problem in a semiconductor. > > For the descretization (see the link [1] below), i want to use the FVM > which uses voronoi box around each node as the control volume. Current > implementation of the ComputeCellGeometry, provide the centroid of the > cell. > > Can i request for functionality similar to ComputeCellGeometry, which > on call returns, the orthocenter and the area perpendiclar to each > edge for flux computation ? > 1) I had to lookup orthocenter and I got this: http://www.mathopenref.com/triangleorthocenter.html which only defines it in 2D, and says it can be outside the triangle. This does not sound promising. If you explain the calculation to me, I can help you implement it. 2) I do give back the edge area if you pass in the edge. Have you looked at TS ex12? It shows me using this routine. I will take a look at the discretization and see if I can understand it (I see they say there is a problem with obtuse elements). Matt > Or any suggested references to look for geometry related routines. > > [1] http://www.iue.tuwien.ac.at/phd/triebl/node30.html > > > Thanks > Reddy > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From MAJones2 at mdanderson.org Thu Jan 16 14:54:19 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Thu, 16 Jan 2014 20:54:19 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1D49@DCPWPEXMBX02.mdanderson.edu> I'm sorry I am very new to the PETSc universe. Can you be more explicit in the instructions you gave me. I tried running 'master -h' but there was no such command and it asked if I meant master1 or next. I tried next and I need a package. Same with master1 From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Thu Jan 16 15:04:16 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 16 Jan 2014 15:04:16 -0600 Subject: [petsc-users] request related to DMPlexComputeCellGeometryFVM In-Reply-To: References: Message-ID: On Thu, Jan 16, 2014 at 2:54 PM, Matthew Knepley wrote: > On Thu, Jan 16, 2014 at 2:36 PM, Dharmendar Reddy > wrote: >> >> Hello, >> I have a request related to cell geometry for FVM. I am >> working on implementing a solver for coupled electron hole transport >> problem in a semiconductor. >> >> For the descretization (see the link [1] below), i want to use the FVM >> which uses voronoi box around each node as the control volume. Current >> implementation of the ComputeCellGeometry, provide the centroid of the >> cell. >> >> Can i request for functionality similar to ComputeCellGeometry, which >> on call returns, the orthocenter and the area perpendiclar to each >> edge for flux computation ? > > > 1) I had to lookup orthocenter and I got this: > http://www.mathopenref.com/triangleorthocenter.html > which only defines it in 2D, and says it can be outside the triangle. > This does not sound promising. > If you explain the calculation to me, I can help you implement it. > I have Fortran implementation, i have not fully tested it but has the core required formulas. I willtry to clean it and send it to you. > 2) I do give back the edge area if you pass in the edge. Have you looked at > TS ex12? It shows me > using this routine. > I will take a look at this one. > I will take a look at the discretization and see if I can understand it (I > see they say there is a problem with > obtuse elements). > Yes there will be a problem, if the element is obtuse which results in the orthocenter being outside the element. The flux computation step will be incorrect in that scenario. My other post on fixing non Delaunay elements is related to this issue. > Matt > >> >> Or any suggested references to look for geometry related routines. >> >> [1] http://www.iue.tuwien.ac.at/phd/triebl/node30.html >> >> >> Thanks >> Reddy > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener From MAJones2 at mdanderson.org Thu Jan 16 15:11:16 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Thu, 16 Jan 2014 21:11:16 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> Now I went to the directory where ex12.c sits and just did a 'make ex12.c' with the following error if this helps? : mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No such file or directory /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. Stop. From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 16 15:22:27 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 15:22:27 -0600 Subject: [petsc-users] Fixing a non Delaunay mesh In-Reply-To: References: Message-ID: On Thu, Jan 16, 2014 at 2:41 PM, Dharmendar Reddy wrote: > Hello, > I there a way to fix a non Delauny mesh via call to any > DMPLex routine ? > I am looking at this scenario. > > I calculate the orthocenter of each element. If i find that for some > elements, the othocenter is outside the element, is there any way i > can fix it via a call to DMPLEx routine or do i have to go back to the > mesher and regenerate the mesh ? > "Flipping" to enforce the Delaunay condition is useful, but can be costly and involve large changes to the structure. Thus you want something like the heap structures used in Triangle. Thus I do not think it belongs in PETSc. However, you can use DMRefine() with a large cell tolerance to just do flipping. Matt > Thanks > Reddy > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 16 15:31:44 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 15:31:44 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > Now I went to the directory where ex12.c sits and just did a ?make > ex12.c? with the following error if this helps? : > > > > mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c > > /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: > /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No > such file or directory > > /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: > /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No > such file or directory > > make: *** No rule to make target > `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. > Stop. > 1) You would type 'make ex12' 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH ( linux-gnu-cxx-debug) environment variables do not match what you built. Please send configure.log and make.log 3) Since it was only recently added, if you want to use the FEM functionality, you must use the development version: http://www.mcs.anl.gov/petsc/developers/index.html Thanks, Matt > > > *From:* Matthew Knepley [mailto:knepley at gmail.com] > *Sent:* Thursday, January 16, 2014 2:48 PM > *To:* Jones,Martin Alexander > *Cc:* petsc-users at mcs.anl.gov > *Subject:* Re: [petsc-users] Problems running ex12.c > > > > On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > > Hello To Whom it Concerns, > > > > I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py > dim order dim 1 laplacian dim order dim 1 boundary > src/snes/examples/tutorials/ex12.h' > but getting the following error: > > > > $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 > laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h > Traceback (most recent call last): > File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in > > from FIAT.reference_element import default_simplex > ImportError: No module named FIAT.reference_element > > > I have removed the requirement of generating the header file (its now all > handled in C). I thought > > I changed the documentation everywhere (including the latest tutorial > slides). Can you try running > > with 'master' (or 'next'), and point me toward the old docs? > > > > Thanks, > > > > Matt > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 16 15:37:26 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 15:37:26 -0600 Subject: [petsc-users] request related to DMPlexComputeCellGeometryFVM In-Reply-To: References: Message-ID: On Thu, Jan 16, 2014 at 3:04 PM, Dharmendar Reddy wrote: > On Thu, Jan 16, 2014 at 2:54 PM, Matthew Knepley > wrote: > > On Thu, Jan 16, 2014 at 2:36 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > > wrote: > >> > >> Hello, > >> I have a request related to cell geometry for FVM. I am > >> working on implementing a solver for coupled electron hole transport > >> problem in a semiconductor. > >> > >> For the descretization (see the link [1] below), i want to use the FVM > >> which uses voronoi box around each node as the control volume. Current > >> implementation of the ComputeCellGeometry, provide the centroid of the > >> cell. > >> > >> Can i request for functionality similar to ComputeCellGeometry, which > >> on call returns, the orthocenter and the area perpendiclar to each > >> edge for flux computation ? > > > > > > 1) I had to lookup orthocenter and I got this: > > http://www.mathopenref.com/triangleorthocenter.html > > which only defines it in 2D, and says it can be outside the > triangle. > > This does not sound promising. > > If you explain the calculation to me, I can help you implement it. > > > I have Fortran implementation, i have not fully tested it but has > the core required formulas. I willtry to clean it and send it to you. > > > 2) I do give back the edge area if you pass in the edge. Have you looked > at > > TS ex12? It shows me > > using this routine. > > > > I will take a look at this one. > > > I will take a look at the discretization and see if I can understand it > (I > > see they say there is a problem with > > obtuse elements). > > > > Yes there will be a problem, if the element is obtuse which results in > the orthocenter being outside the element. The flux computation step > will be incorrect in that scenario. My other post on fixing non > Delaunay elements is related to this issue. Then I would at least consider the FVM we have implemented in TS ex11. It does not have the sensitive mesh dependence, is 2nd order TVD, and works in both 2D and 3D. You can see a discussion of the code in my slides from Paris on the website. Matt > > > Matt > > > >> > >> Or any suggested references to look for geometry related routines. > >> > >> [1] http://www.iue.tuwien.ac.at/phd/triebl/node30.html > >> > >> > >> Thanks > >> Reddy > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Thu Jan 16 15:50:04 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 16 Jan 2014 15:50:04 -0600 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: <52D842AB.3080105@ornl.gov> References: <52D6DDFA.2010801@ornl.gov> <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> <52D7E4C7.6050604@ornl.gov> <52D842AB.3080105@ornl.gov> Message-ID: Damn, damn, damn, I?ll have to get that cmake for xolotl working to use the right compiler in order to debug this. Barry On Jan 16, 2014, at 2:35 PM, Jay Jay Billings wrote: > Hi Barry, > > It still fails in cd0e7f7. Error message below. > > Jay > > [1]PETSC ERROR: --------------------- Error Message ------------------------------------ > [1]PETSC ERROR: Arguments are incompatible! > [1]PETSC ERROR: Local size 7 not compatible with block size 13! > [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ > [0]PETSC ERROR: Arguments are incompatible! > [0]PETSC ERROR: Local size 7 not compatible with block size 13! > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 > ------------------------------------------------------------------------ > [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 > [1]PETSC ERROR: See docs/changes/index.html for recent updates. > [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [1]PETSC ERROR: See docs/index.html for manual pages. > [1]PETSC ERROR: ------------------------------------------------------------------------ > [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 > [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib > [1]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 > [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 > [1]PETSC ERROR: ------------------------------------------------------------------------ > [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c > [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib > [0]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 > [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c > [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c > [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c > [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [1]PETSC ERROR: [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c > [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c > [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c > [1]PETSC ERROR: [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c > SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [1]PETSC ERROR: [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c > [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp > [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp > > > On 01/16/2014 08:55 AM, Jay J. Billings wrote: >> Thanks very much Barry. I'll check it out. >> >> Jay >> >> On 01/15/2014 09:35 PM, Barry Smith wrote: >>> This is now fixed in master and next >>> >>> On Jan 15, 2014, at 4:06 PM, Barry Smith wrote: >>> >>>> Jay, >>>> >>>> This is our bug. We?ll need to figure out the fix and get back to you. >>>> >>>> Barry >>>> >>>> On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: >>>> >>>>> Everyone, >>>>> >>>>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. >>>>> >>>>> Jay >>>>> >>>>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>> [0]PETSC ERROR: Arguments are incompatible! >>>>> [1]PETSC ERROR: Arguments are incompatible! >>>>> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>> [1]PETSC ERROR: See docs/index.html for manual pages. >>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>> >>>>> -- >>>>> Jay Jay Billings >>>>> Oak Ridge National Laboratory >>>>> Twitter Handle: @jayjaybillings >>>>> > From MAJones2 at mdanderson.org Thu Jan 16 15:55:41 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Thu, 16 Jan 2014 21:55:41 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu>, Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> Thanks! ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:31 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander > wrote: Now I went to the directory where ex12.c sits and just did a ?make ex12.c? with the following error if this helps? : mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No such file or directory /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. Stop. 1) You would type 'make ex12' 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH (linux-gnu-cxx-debug) environment variables do not match what you built. Please send configure.log and make.log 3) Since it was only recently added, if you want to use the FEM functionality, you must use the development version: http://www.mcs.anl.gov/petsc/developers/index.html Thanks, Matt From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: configure.log Type: text/x-log Size: 1417333 bytes Desc: configure.log URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: make.log Type: text/x-log Size: 1520289 bytes Desc: make.log URL: From knepley at gmail.com Thu Jan 16 15:58:49 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 15:58:49 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > Thanks! > You built with PETSC_ARCH=arch-linux2-cxx-debug Matt > ------------------------------ > *From:* Matthew Knepley [knepley at gmail.com] > *Sent:* Thursday, January 16, 2014 3:31 PM > *To:* Jones,Martin Alexander > *Cc:* petsc-users at mcs.anl.gov > *Subject:* Re: [petsc-users] Problems running ex12.c > > On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > >> Now I went to the directory where ex12.c sits and just did a ?make >> ex12.c? with the following error if this helps? : >> >> >> >> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >> ex12.c >> >> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >> such file or directory >> >> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >> such file or directory >> >> make: *** No rule to make target >> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >> Stop. >> > > 1) You would type 'make ex12' > > 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH ( > linux-gnu-cxx-debug) environment variables > do not match what you built. Please send configure.log and make.log > > 3) Since it was only recently added, if you want to use the FEM > functionality, you must use the development version: > > http://www.mcs.anl.gov/petsc/developers/index.html > > Thanks, > > Matt > > >> >> >> *From:* Matthew Knepley [mailto:knepley at gmail.com] >> *Sent:* Thursday, January 16, 2014 2:48 PM >> *To:* Jones,Martin Alexander >> *Cc:* petsc-users at mcs.anl.gov >> *Subject:* Re: [petsc-users] Problems running ex12.c >> >> >> >> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >> Hello To Whom it Concerns, >> >> >> >> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >> dim order dim 1 laplacian dim order dim 1 boundary >> src/snes/examples/tutorials/ex12.h' >> but getting the following error: >> >> >> >> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >> Traceback (most recent call last): >> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in >> >> from FIAT.reference_element import default_simplex >> ImportError: No module named FIAT.reference_element >> >> >> I have removed the requirement of generating the header file (its now all >> handled in C). I thought >> >> I changed the documentation everywhere (including the latest tutorial >> slides). Can you try running >> >> with 'master' (or 'next'), and point me toward the old docs? >> >> >> >> Thanks, >> >> >> >> Matt >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From MAJones2 at mdanderson.org Thu Jan 16 16:05:04 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Thu, 16 Jan 2014 22:05:04 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu>, Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> Hi. I changed the ENV variable to the correct entry. when I type make ex12 I get this: mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/home/mjonesa/PETSc/petsc-3.4.3/include -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni -D__INSDIR__=src/snes/examples/tutorials/ ex12.c ex12.c:14:18: fatal error: ex12.h: No such file or directory compilation terminated. make: *** [ex12.o] Error 1 Any help of yours is very much appreciated. ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:58 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander > wrote: Thanks! You built with PETSC_ARCH=arch-linux2-cxx-debug Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:31 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander > wrote: Now I went to the directory where ex12.c sits and just did a ?make ex12.c? with the following error if this helps? : mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No such file or directory /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. Stop. 1) You would type 'make ex12' 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH (linux-gnu-cxx-debug) environment variables do not match what you built. Please send configure.log and make.log 3) Since it was only recently added, if you want to use the FEM functionality, you must use the development version: http://www.mcs.anl.gov/petsc/developers/index.html Thanks, Matt From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 16 16:06:46 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 16:06:46 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > Hi. I changed the ENV variable to the correct entry. when I type make > ex12 I get this: > > mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 > g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing > -Wno-unknown-pragmas -g -fPIC > -I/home/mjonesa/PETSc/petsc-3.4.3/include > -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include > -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni > -D__INSDIR__=src/snes/examples/tutorials/ ex12.c > ex12.c:14:18: fatal error: ex12.h: No such file or directory > compilation terminated. > make: *** [ex12.o] Error 1 > > Any help of yours is very much appreciated. > Yes, this relates to my 3). This is not going to work for you with the release. Please see the link I sent. Matt > ------------------------------ > *From:* Matthew Knepley [knepley at gmail.com] > *Sent:* Thursday, January 16, 2014 3:58 PM > *To:* Jones,Martin Alexander > *Cc:* petsc-users at mcs.anl.gov > *Subject:* Re: [petsc-users] Problems running ex12.c > > On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > >> Thanks! >> > > You built with PETSC_ARCH=arch-linux2-cxx-debug > > Matt > > >> ------------------------------ >> *From:* Matthew Knepley [knepley at gmail.com] >> *Sent:* Thursday, January 16, 2014 3:31 PM >> *To:* Jones,Martin Alexander >> *Cc:* petsc-users at mcs.anl.gov >> *Subject:* Re: [petsc-users] Problems running ex12.c >> >> On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >>> Now I went to the directory where ex12.c sits and just did a ?make >>> ex12.c? with the following error if this helps? : >>> >>> >>> >>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>> ex12.c >>> >>> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >>> such file or directory >>> >>> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >>> such file or directory >>> >>> make: *** No rule to make target >>> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >>> Stop. >>> >> >> 1) You would type 'make ex12' >> >> 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH >> (linux-gnu-cxx-debug) environment variables >> do not match what you built. Please send configure.log and make.log >> >> 3) Since it was only recently added, if you want to use the FEM >> functionality, you must use the development version: >> >> http://www.mcs.anl.gov/petsc/developers/index.html >> >> Thanks, >> >> Matt >> >> >>> >>> >>> *From:* Matthew Knepley [mailto:knepley at gmail.com] >>> *Sent:* Thursday, January 16, 2014 2:48 PM >>> *To:* Jones,Martin Alexander >>> *Cc:* petsc-users at mcs.anl.gov >>> *Subject:* Re: [petsc-users] Problems running ex12.c >>> >>> >>> >>> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >>> MAJones2 at mdanderson.org> wrote: >>> >>> Hello To Whom it Concerns, >>> >>> >>> >>> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >>> dim order dim 1 laplacian dim order dim 1 boundary >>> src/snes/examples/tutorials/ex12.h' >>> but getting the following error: >>> >>> >>> >>> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >>> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >>> Traceback (most recent call last): >>> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in >>> >>> from FIAT.reference_element import default_simplex >>> ImportError: No module named FIAT.reference_element >>> >>> >>> I have removed the requirement of generating the header file (its now >>> all handled in C). I thought >>> >>> I changed the documentation everywhere (including the latest tutorial >>> slides). Can you try running >>> >>> with 'master' (or 'next'), and point me toward the old docs? >>> >>> >>> >>> Thanks, >>> >>> >>> >>> Matt >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From MAJones2 at mdanderson.org Thu Jan 16 16:33:41 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Thu, 16 Jan 2014 22:33:41 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu>, Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> Hi, I have downloaded and built the dev version you suggested. I think I need the triangle package to run this particular case. Is there any thing else that appears wrong in what I have done from the error messages below: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: No support for this operation for this object type! [0]PETSC ERROR: Mesh generation needs external package support. Please reconfigure with --download-triangle.! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa Thu Jan 16 16:28:20 2014 [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local --with-clanguage=c++ --with-c2html=0 --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: DMPlexGenerate() line 4332 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c [0]PETSC ERROR: CreateMesh() line 295 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c [0]PETSC ERROR: main() line 659 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 4:06 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander > wrote: Hi. I changed the ENV variable to the correct entry. when I type make ex12 I get this: mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/home/mjonesa/PETSc/petsc-3.4.3/include -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni -D__INSDIR__=src/snes/examples/tutorials/ ex12.c ex12.c:14:18: fatal error: ex12.h: No such file or directory compilation terminated. make: *** [ex12.o] Error 1 Any help of yours is very much appreciated. Yes, this relates to my 3). This is not going to work for you with the release. Please see the link I sent. Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:58 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander > wrote: Thanks! You built with PETSC_ARCH=arch-linux2-cxx-debug Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:31 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander > wrote: Now I went to the directory where ex12.c sits and just did a ?make ex12.c? with the following error if this helps? : mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No such file or directory /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. Stop. 1) You would type 'make ex12' 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH (linux-gnu-cxx-debug) environment variables do not match what you built. Please send configure.log and make.log 3) Since it was only recently added, if you want to use the FEM functionality, you must use the development version: http://www.mcs.anl.gov/petsc/developers/index.html Thanks, Matt From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 16 16:37:46 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 16:37:46 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > Hi, I have downloaded and built the dev version you suggested. I think I > need the triangle package to run this particular case. Is there any thing > else that appears wrong in what I have done from the error messages below: > Great! Its running. You can reconfigure like this: $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-triangle and then rebuild make and then rerun. You can load meshes, but its much easier to have triangle create them. Thanks for being patient, Matt > [0]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [0]PETSC ERROR: No support for this operation for this object type! > [0]PETSC ERROR: Mesh generation needs external package support. > Please reconfigure with --download-triangle.! > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT > Date: 2014-01-15 20:33:42 -0600 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa > Thu Jan 16 16:28:20 2014 > [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib > [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 > [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local > --with-clanguage=c++ --with-c2html=0 > --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: DMPlexGenerate() line 4332 in > /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c > [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in > /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c > [0]PETSC ERROR: CreateMesh() line 295 in > /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c > [0]PETSC ERROR: main() line 659 in > /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c > application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 > ------------------------------ > *From:* Matthew Knepley [knepley at gmail.com] > *Sent:* Thursday, January 16, 2014 4:06 PM > *To:* Jones,Martin Alexander > *Cc:* petsc-users at mcs.anl.gov > *Subject:* Re: [petsc-users] Problems running ex12.c > > On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > >> Hi. I changed the ENV variable to the correct entry. when I type make >> ex12 I get this: >> >> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 >> g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing >> -Wno-unknown-pragmas -g -fPIC >> -I/home/mjonesa/PETSc/petsc-3.4.3/include >> -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include >> -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni >> -D__INSDIR__=src/snes/examples/tutorials/ ex12.c >> ex12.c:14:18: fatal error: ex12.h: No such file or directory >> compilation terminated. >> make: *** [ex12.o] Error 1 >> >> Any help of yours is very much appreciated. >> > > Yes, this relates to my 3). This is not going to work for you with the > release. Please see the link I sent. > > Matt > > >> ------------------------------ >> *From:* Matthew Knepley [knepley at gmail.com] >> *Sent:* Thursday, January 16, 2014 3:58 PM >> *To:* Jones,Martin Alexander >> *Cc:* petsc-users at mcs.anl.gov >> *Subject:* Re: [petsc-users] Problems running ex12.c >> >> On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >>> Thanks! >>> >> >> You built with PETSC_ARCH=arch-linux2-cxx-debug >> >> Matt >> >> >>> ------------------------------ >>> *From:* Matthew Knepley [knepley at gmail.com] >>> *Sent:* Thursday, January 16, 2014 3:31 PM >>> *To:* Jones,Martin Alexander >>> *Cc:* petsc-users at mcs.anl.gov >>> *Subject:* Re: [petsc-users] Problems running ex12.c >>> >>> On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < >>> MAJones2 at mdanderson.org> wrote: >>> >>>> Now I went to the directory where ex12.c sits and just did a ?make >>>> ex12.c? with the following error if this helps? : >>>> >>>> >>>> >>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>> ex12.c >>>> >>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >>>> such file or directory >>>> >>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >>>> such file or directory >>>> >>>> make: *** No rule to make target >>>> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >>>> Stop. >>>> >>> >>> 1) You would type 'make ex12' >>> >>> 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or >>> PETSC_ARCH (linux-gnu-cxx-debug) environment variables >>> do not match what you built. Please send configure.log and make.log >>> >>> 3) Since it was only recently added, if you want to use the FEM >>> functionality, you must use the development version: >>> >>> http://www.mcs.anl.gov/petsc/developers/index.html >>> >>> Thanks, >>> >>> Matt >>> >>> >>>> >>>> >>>> *From:* Matthew Knepley [mailto:knepley at gmail.com] >>>> *Sent:* Thursday, January 16, 2014 2:48 PM >>>> *To:* Jones,Martin Alexander >>>> *Cc:* petsc-users at mcs.anl.gov >>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>> >>>> >>>> >>>> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >>>> MAJones2 at mdanderson.org> wrote: >>>> >>>> Hello To Whom it Concerns, >>>> >>>> >>>> >>>> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >>>> dim order dim 1 laplacian dim order dim 1 boundary >>>> src/snes/examples/tutorials/ex12.h' >>>> but getting the following error: >>>> >>>> >>>> >>>> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >>>> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >>>> Traceback (most recent call last): >>>> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in >>>> >>>> from FIAT.reference_element import default_simplex >>>> ImportError: No module named FIAT.reference_element >>>> >>>> >>>> I have removed the requirement of generating the header file (its now >>>> all handled in C). I thought >>>> >>>> I changed the documentation everywhere (including the latest tutorial >>>> slides). Can you try running >>>> >>>> with 'master' (or 'next'), and point me toward the old docs? >>>> >>>> >>>> >>>> Thanks, >>>> >>>> >>>> >>>> Matt >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From billingsjj at ornl.gov Thu Jan 16 17:02:59 2014 From: billingsjj at ornl.gov (Jay J. Billings) Date: Thu, 16 Jan 2014 18:02:59 -0500 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: References: <52D6DDFA.2010801@ornl.gov> <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> <52D7E4C7.6050604@ornl.gov> <52D842AB.3080105@ornl.gov> Message-ID: <52D86523.7000205@ornl.gov> Barry, Have you tried this after deleting CMakeCache.txt? CXX=mpicxx cmake -DCMAKE_BUILD_TYPE=Release ../xolotl-Source\@xolotl/ It correctly switched from /usr/bin/g++ to mpicxx for me. Jay On 01/16/2014 04:50 PM, Barry Smith wrote: > Damn, damn, damn, I?ll have to get that cmake for xolotl working to use the right compiler in order to debug this. > > Barry > > On Jan 16, 2014, at 2:35 PM, Jay Jay Billings wrote: > >> Hi Barry, >> >> It still fails in cd0e7f7. Error message below. >> >> Jay >> >> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [1]PETSC ERROR: Arguments are incompatible! >> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [0]PETSC ERROR: Arguments are incompatible! >> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 >> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [0]PETSC ERROR: See docs/index.html for manual pages. >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 >> ------------------------------------------------------------------------ >> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 >> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [1]PETSC ERROR: See docs/index.html for manual pages. >> [1]PETSC ERROR: ------------------------------------------------------------------------ >> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 >> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >> [1]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 >> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >> [1]PETSC ERROR: ------------------------------------------------------------------------ >> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >> [0]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 >> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [1]PETSC ERROR: [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >> [1]PETSC ERROR: [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [1]PETSC ERROR: [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >> >> >> On 01/16/2014 08:55 AM, Jay J. Billings wrote: >>> Thanks very much Barry. I'll check it out. >>> >>> Jay >>> >>> On 01/15/2014 09:35 PM, Barry Smith wrote: >>>> This is now fixed in master and next >>>> >>>> On Jan 15, 2014, at 4:06 PM, Barry Smith wrote: >>>> >>>>> Jay, >>>>> >>>>> This is our bug. We?ll need to figure out the fix and get back to you. >>>>> >>>>> Barry >>>>> >>>>> On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: >>>>> >>>>>> Everyone, >>>>>> >>>>>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. >>>>>> >>>>>> Jay >>>>>> >>>>>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>>> [0]PETSC ERROR: Arguments are incompatible! >>>>>> [1]PETSC ERROR: Arguments are incompatible! >>>>>> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>>> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>>> [1]PETSC ERROR: See docs/index.html for manual pages. >>>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>>> ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>>> >>>>>> -- >>>>>> Jay Jay Billings >>>>>> Oak Ridge National Laboratory >>>>>> Twitter Handle: @jayjaybillings >>>>>> -- Jay Jay Billings Oak Ridge National Laboratory Twitter Handle: @jayjaybillings From MAJones2 at mdanderson.org Thu Jan 16 17:43:16 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Thu, 16 Jan 2014 23:43:16 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu>, Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> Hi, This is the next error message after configuring and building with the triangle package when trying to run ex12 ./ex12 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c [0]PETSC ERROR: [0] SNES user function line 2088 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: [0] SNESComputeFunction line 2076 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c [0]PETSC ERROR: [0] SNESSolve line 3765 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa Thu Jan 16 17:41:23 2014 [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug --download-triangle [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 4:37 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander > wrote: Hi, I have downloaded and built the dev version you suggested. I think I need the triangle package to run this particular case. Is there any thing else that appears wrong in what I have done from the error messages below: Great! Its running. You can reconfigure like this: $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-triangle and then rebuild make and then rerun. You can load meshes, but its much easier to have triangle create them. Thanks for being patient, Matt [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: No support for this operation for this object type! [0]PETSC ERROR: Mesh generation needs external package support. Please reconfigure with --download-triangle.! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa Thu Jan 16 16:28:20 2014 [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local --with-clanguage=c++ --with-c2html=0 --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: DMPlexGenerate() line 4332 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c [0]PETSC ERROR: CreateMesh() line 295 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c [0]PETSC ERROR: main() line 659 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 4:06 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander > wrote: Hi. I changed the ENV variable to the correct entry. when I type make ex12 I get this: mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/home/mjonesa/PETSc/petsc-3.4.3/include -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni -D__INSDIR__=src/snes/examples/tutorials/ ex12.c ex12.c:14:18: fatal error: ex12.h: No such file or directory compilation terminated. make: *** [ex12.o] Error 1 Any help of yours is very much appreciated. Yes, this relates to my 3). This is not going to work for you with the release. Please see the link I sent. Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:58 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander > wrote: Thanks! You built with PETSC_ARCH=arch-linux2-cxx-debug Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:31 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander > wrote: Now I went to the directory where ex12.c sits and just did a ?make ex12.c? with the following error if this helps? : mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No such file or directory /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. Stop. 1) You would type 'make ex12' 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH (linux-gnu-cxx-debug) environment variables do not match what you built. Please send configure.log and make.log 3) Since it was only recently added, if you want to use the FEM functionality, you must use the development version: http://www.mcs.anl.gov/petsc/developers/index.html Thanks, Matt From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Thu Jan 16 18:28:08 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 16 Jan 2014 18:28:08 -0600 Subject: [petsc-users] SNES realted Message-ID: Hello, I am solving a set of equations with SNES F1 (x1,x2,x3) = 0 F2 (x1,x2,x3) = 0 F3 (x1,x2,x3) = 0 x1 and x2 are always > 0, how do i enforce that during the linesearch ? The system of equations is shown on page 1 of pdf here http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf F1 = equation 1 F2 = equation 2 F3 = equation 5 x1 = n, X2=p and X3 = psi Thanks Reddy From knepley at gmail.com Thu Jan 16 18:35:32 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 18:35:32 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Thu, Jan 16, 2014 at 5:43 PM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > Hi, This is the next error message after configuring and building with > the triangle package when trying to run ex12 > This is my fault for bad defaults. I will fix. Try running ./ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 for a representative run. Then you could try 3D ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem or a full run ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate -petscspace_order 1 ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate -petscspace_order 2 Let me know if those work. Thanks, Matt > ./ex12 > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point > Exception,probably divide by zero > [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [0]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSCERROR: or try > http://valgrind.org on GNU/linux and Apple Mac OS X to find memory > corruption errors > [0]PETSC ERROR: likely location of problem given in stack below > [0]PETSC ERROR: --------------------- Stack Frames > ------------------------------------ > [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not > available, > [0]PETSC ERROR: INSTEAD the line number of the start of the function > [0]PETSC ERROR: is given. > [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 > /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c > [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 > /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c > [0]PETSC ERROR: [0] SNES user function line 2088 > /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: [0] SNESComputeFunction line 2076 > /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 > /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c > [0]PETSC ERROR: [0] SNESSolve line 3765 > /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [0]PETSC ERROR: Signal received! > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT > Date: 2014-01-15 20:33:42 -0600 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa > Thu Jan 16 17:41:23 2014 > [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib > [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 > [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local > --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" > --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug > --download-triangle > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: User provided function() line 0 in unknown file > application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 > ------------------------------ > *From:* Matthew Knepley [knepley at gmail.com] > *Sent:* Thursday, January 16, 2014 4:37 PM > *To:* Jones,Martin Alexander > *Cc:* petsc-users at mcs.anl.gov > *Subject:* Re: [petsc-users] Problems running ex12.c > > On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > >> Hi, I have downloaded and built the dev version you suggested. I think >> I need the triangle package to run this particular case. Is there any thing >> else that appears wrong in what I have done from the error messages below: >> > > Great! Its running. You can reconfigure like this: > > $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py > --download-triangle > > and then rebuild > > make > > and then rerun. You can load meshes, but its much easier to have > triangle create them. > > Thanks for being patient, > > Matt > > >> [0]PETSC ERROR: --------------------- Error Message >> ------------------------------------ >> [0]PETSC ERROR: No support for this operation for this object type! >> [0]PETSC ERROR: Mesh generation needs external package support. >> Please reconfigure with --download-triangle.! >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT >> Date: 2014-01-15 20:33:42 -0600 >> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [0]PETSC ERROR: See docs/index.html for manual pages. >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa >> Thu Jan 16 16:28:20 2014 >> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >> [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 >> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >> --with-clanguage=c++ --with-c2html=0 >> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: DMPlexGenerate() line 4332 in >> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c >> [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in >> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c >> [0]PETSC ERROR: CreateMesh() line 295 in >> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >> [0]PETSC ERROR: main() line 659 in >> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >> application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 >> ------------------------------ >> *From:* Matthew Knepley [knepley at gmail.com] >> *Sent:* Thursday, January 16, 2014 4:06 PM >> *To:* Jones,Martin Alexander >> *Cc:* petsc-users at mcs.anl.gov >> *Subject:* Re: [petsc-users] Problems running ex12.c >> >> On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >>> Hi. I changed the ENV variable to the correct entry. when I type make >>> ex12 I get this: >>> >>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 >>> g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing >>> -Wno-unknown-pragmas -g -fPIC >>> -I/home/mjonesa/PETSc/petsc-3.4.3/include >>> -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include >>> -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni >>> -D__INSDIR__=src/snes/examples/tutorials/ ex12.c >>> ex12.c:14:18: fatal error: ex12.h: No such file or directory >>> compilation terminated. >>> make: *** [ex12.o] Error 1 >>> >>> Any help of yours is very much appreciated. >>> >> >> Yes, this relates to my 3). This is not going to work for you with the >> release. Please see the link I sent. >> >> Matt >> >> >>> ------------------------------ >>> *From:* Matthew Knepley [knepley at gmail.com] >>> *Sent:* Thursday, January 16, 2014 3:58 PM >>> *To:* Jones,Martin Alexander >>> *Cc:* petsc-users at mcs.anl.gov >>> *Subject:* Re: [petsc-users] Problems running ex12.c >>> >>> On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < >>> MAJones2 at mdanderson.org> wrote: >>> >>>> Thanks! >>>> >>> >>> You built with PETSC_ARCH=arch-linux2-cxx-debug >>> >>> Matt >>> >>> >>>> ------------------------------ >>>> *From:* Matthew Knepley [knepley at gmail.com] >>>> *Sent:* Thursday, January 16, 2014 3:31 PM >>>> *To:* Jones,Martin Alexander >>>> *Cc:* petsc-users at mcs.anl.gov >>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>> >>>> On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < >>>> MAJones2 at mdanderson.org> wrote: >>>> >>>>> Now I went to the directory where ex12.c sits and just did a ?make >>>>> ex12.c? with the following error if this helps? : >>>>> >>>>> >>>>> >>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>>> ex12.c >>>>> >>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >>>>> such file or directory >>>>> >>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >>>>> such file or directory >>>>> >>>>> make: *** No rule to make target >>>>> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >>>>> Stop. >>>>> >>>> >>>> 1) You would type 'make ex12' >>>> >>>> 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or >>>> PETSC_ARCH (linux-gnu-cxx-debug) environment variables >>>> do not match what you built. Please send configure.log and make.log >>>> >>>> 3) Since it was only recently added, if you want to use the FEM >>>> functionality, you must use the development version: >>>> >>>> http://www.mcs.anl.gov/petsc/developers/index.html >>>> >>>> Thanks, >>>> >>>> Matt >>>> >>>> >>>>> >>>>> >>>>> *From:* Matthew Knepley [mailto:knepley at gmail.com] >>>>> *Sent:* Thursday, January 16, 2014 2:48 PM >>>>> *To:* Jones,Martin Alexander >>>>> *Cc:* petsc-users at mcs.anl.gov >>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>> >>>>> >>>>> >>>>> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >>>>> MAJones2 at mdanderson.org> wrote: >>>>> >>>>> Hello To Whom it Concerns, >>>>> >>>>> >>>>> >>>>> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >>>>> dim order dim 1 laplacian dim order dim 1 boundary >>>>> src/snes/examples/tutorials/ex12.h' >>>>> but getting the following error: >>>>> >>>>> >>>>> >>>>> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >>>>> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >>>>> Traceback (most recent call last): >>>>> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in >>>>> >>>>> from FIAT.reference_element import default_simplex >>>>> ImportError: No module named FIAT.reference_element >>>>> >>>>> >>>>> I have removed the requirement of generating the header file (its now >>>>> all handled in C). I thought >>>>> >>>>> I changed the documentation everywhere (including the latest tutorial >>>>> slides). Can you try running >>>>> >>>>> with 'master' (or 'next'), and point me toward the old docs? >>>>> >>>>> >>>>> >>>>> Thanks, >>>>> >>>>> >>>>> >>>>> Matt >>>>> >>>>> >>>>> >>>>> -- >>>>> What most experimenters take for granted before they begin their >>>>> experiments is infinitely more interesting than any results to which their >>>>> experiments lead. >>>>> -- Norbert Wiener >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 16 18:46:27 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 16 Jan 2014 18:46:27 -0600 Subject: [petsc-users] SNES realted In-Reply-To: References: Message-ID: On Thu, Jan 16, 2014 at 6:28 PM, Dharmendar Reddy wrote: > Hello, > I am solving a set of equations with SNES > F1 (x1,x2,x3) = 0 > F2 (x1,x2,x3) = 0 > F3 (x1,x2,x3) = 0 > > x1 and x2 are always > 0, how do i enforce that during the linesearch ? > There are two options: a) Make your own line search that projects the step This is what we have traditionally done. It can destroy convergence, but its simple. b) Use SNESVI and set bounds on x1 and x2 This is supposed to work, but has hardly been tested at all. When we get some time we plan on beating on this. If you feel like being a guinea pig, do this. Matt > The system of equations is shown on page 1 of pdf here > http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf > > F1 = equation 1 > F2 = equation 2 > F3 = equation 5 > > x1 = n, X2=p and X3 = psi > > Thanks > Reddy > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Thu Jan 16 18:47:43 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 16 Jan 2014 18:47:43 -0600 Subject: [petsc-users] SNES realted In-Reply-To: References: Message-ID: <6934EA83-E20E-48F8-8534-9053C1D95F9F@mcs.anl.gov> On Jan 16, 2014, at 6:28 PM, Dharmendar Reddy wrote: > Hello, > I am solving a set of equations with SNES > F1 (x1,x2,x3) = 0 > F2 (x1,x2,x3) = 0 > F3 (x1,x2,x3) = 0 > > x1 and x2 are always > 0, how do i enforce that during the line search ? You don?t This is an example of a variational inequality. You use the SNESType of vinewtonrsls to solve it and call SNESVISetVariableBounds() to set the bounds on the variables. Good luck, Barry > > The system of equations is shown on page 1 of pdf here > http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf > > F1 = equation 1 > F2 = equation 2 > F3 = equation 5 > > x1 = n, X2=p and X3 = psi > > Thanks > Reddy From bsmith at mcs.anl.gov Thu Jan 16 18:53:05 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 16 Jan 2014 18:53:05 -0600 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: <52D842AB.3080105@ornl.gov> References: <52D6DDFA.2010801@ornl.gov> <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> <52D7E4C7.6050604@ornl.gov> <52D842AB.3080105@ornl.gov> Message-ID: Sorry, It is now fixed. After you pull you should rerun your ./configure with the additional options ?download-superlu_dist ?download-parmetis ?download-metis Then when you run the code use the additional option -pc_factor_mat_solver_package superlu_dist so it will do the parallel direct solver for you. Barry On Jan 16, 2014, at 2:35 PM, Jay Jay Billings wrote: > Hi Barry, > > It still fails in cd0e7f7. Error message below. > > Jay > > [1]PETSC ERROR: --------------------- Error Message ------------------------------------ > [1]PETSC ERROR: Arguments are incompatible! > [1]PETSC ERROR: Local size 7 not compatible with block size 13! > [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ > [0]PETSC ERROR: Arguments are incompatible! > [0]PETSC ERROR: Local size 7 not compatible with block size 13! > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 > ------------------------------------------------------------------------ > [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 > [1]PETSC ERROR: See docs/changes/index.html for recent updates. > [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [1]PETSC ERROR: See docs/index.html for manual pages. > [1]PETSC ERROR: ------------------------------------------------------------------------ > [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 > [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib > [1]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 > [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 > [1]PETSC ERROR: ------------------------------------------------------------------------ > [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c > [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib > [0]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 > [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 > [0]PETSC ERROR: ------------------------------------------------------------------------ > [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c > [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c > [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c > [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [1]PETSC ERROR: [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c > [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c > [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c > [1]PETSC ERROR: [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c > SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > [1]PETSC ERROR: [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c > [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c > TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp > [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp > > > On 01/16/2014 08:55 AM, Jay J. Billings wrote: >> Thanks very much Barry. I'll check it out. >> >> Jay >> >> On 01/15/2014 09:35 PM, Barry Smith wrote: >>> This is now fixed in master and next >>> >>> On Jan 15, 2014, at 4:06 PM, Barry Smith wrote: >>> >>>> Jay, >>>> >>>> This is our bug. We?ll need to figure out the fix and get back to you. >>>> >>>> Barry >>>> >>>> On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: >>>> >>>>> Everyone, >>>>> >>>>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. >>>>> >>>>> Jay >>>>> >>>>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>> [0]PETSC ERROR: Arguments are incompatible! >>>>> [1]PETSC ERROR: Arguments are incompatible! >>>>> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>> [1]PETSC ERROR: See docs/index.html for manual pages. >>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>> >>>>> -- >>>>> Jay Jay Billings >>>>> Oak Ridge National Laboratory >>>>> Twitter Handle: @jayjaybillings >>>>> > From billingsjj at ornl.gov Thu Jan 16 19:49:42 2014 From: billingsjj at ornl.gov (Jay Jay Billings) Date: Thu, 16 Jan 2014 20:49:42 -0500 Subject: [petsc-users] Local size 7 not compatible with block size 13 In-Reply-To: References: <52D6DDFA.2010801@ornl.gov> <8F4179FE-E13F-4A2F-96E5-5B593FC16712@mcs.anl.gov> <52D7E4C7.6050604@ornl.gov> <52D842AB.3080105@ornl.gov> Message-ID: <52D88C36.70706@ornl.gov> Barry, Thanks very much. I'll check it out in the morning and let you know. Jay On 01/16/2014 07:53 PM, Barry Smith wrote: > Sorry, > > It is now fixed. > > After you pull you should rerun your ./configure with the additional options ?download-superlu_dist ?download-parmetis ?download-metis > > Then when you run the code use the additional option -pc_factor_mat_solver_package superlu_dist so it will do the parallel direct solver for you. > > Barry > > On Jan 16, 2014, at 2:35 PM, Jay Jay Billings wrote: > >> Hi Barry, >> >> It still fails in cd0e7f7. Error message below. >> >> Jay >> >> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [1]PETSC ERROR: Arguments are incompatible! >> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [0]PETSC ERROR: Arguments are incompatible! >> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 >> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [0]PETSC ERROR: See docs/index.html for manual pages. >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 >> ------------------------------------------------------------------------ >> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 >> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [1]PETSC ERROR: See docs/index.html for manual pages. >> [1]PETSC ERROR: ------------------------------------------------------------------------ >> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Thu Jan 16 15:31:56 2014 >> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >> [1]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 >> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >> [1]PETSC ERROR: ------------------------------------------------------------------------ >> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >> [0]PETSC ERROR: Configure run at Thu Jan 16 14:29:58 2014 >> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >> [0]PETSC ERROR: ------------------------------------------------------------------------ >> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [1]PETSC ERROR: [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >> [1]PETSC ERROR: [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> [1]PETSC ERROR: [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >> TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >> >> >> On 01/16/2014 08:55 AM, Jay J. Billings wrote: >>> Thanks very much Barry. I'll check it out. >>> >>> Jay >>> >>> On 01/15/2014 09:35 PM, Barry Smith wrote: >>>> This is now fixed in master and next >>>> >>>> On Jan 15, 2014, at 4:06 PM, Barry Smith wrote: >>>> >>>>> Jay, >>>>> >>>>> This is our bug. We?ll need to figure out the fix and get back to you. >>>>> >>>>> Barry >>>>> >>>>> On Jan 15, 2014, at 1:14 PM, Jay J. Billings wrote: >>>>> >>>>>> Everyone, >>>>>> >>>>>> I'm trying to run PETSc in parallel and I'm getting an error I haven't seen before that the local and block size arguments don't match. Can anyone point me in the right direction on this? It happens right after I call TSSolve and, according to the backtrace, when TSSolve is trying to form the Jacobian. It doesn't look like it is actually calling my Jacobian routine, although I could be wrong about that. >>>>>> >>>>>> Jay >>>>>> >>>>>> [1]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>>>> [0]PETSC ERROR: Arguments are incompatible! >>>>>> [1]PETSC ERROR: Arguments are incompatible! >>>>>> [0]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>>> [1]PETSC ERROR: Local size 7 not compatible with block size 13! >>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>>> [1]PETSC ERROR: See docs/index.html for manual pages. >>>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [1]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>>> [1]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>>> [1]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>>> [1]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>>> [1]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [1]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>>> [1]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [1]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [1]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>>> [1]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [1]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [1]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [1]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>>> [1]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [1]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [1]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [1]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>>> ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2305-g52cd893 GIT Date: 2014-01-13 09:37:41 -0500 >>>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: ./xolotl on a arch-linux2-c-opt named box.ornl.gov by jay Wed Jan 15 14:12:23 2014 >>>>>> [0]PETSC ERROR: Libraries linked from /opt/petsc-latest_mpich-3.0.1/lib >>>>>> [0]PETSC ERROR: Configure run at Mon Jan 13 11:11:18 2014 >>>>>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-latest_mpich-3.0.1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif77 --with-debugging=no --download-f-blas-lapack=1 --FOPTFLAGS= --with-shared-libraries=1 --download-hypre=yes --with-debugging=0 >>>>>> [0]PETSC ERROR: ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: PetscLayoutSetBlockSize() line 464 in /home/jay/Programs/petsc/src/vec/is/utils/pmap.c >>>>>> [0]PETSC ERROR: MatSetBlockSizes() line 6772 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [0]PETSC ERROR: MatDuplicate_SeqAIJ() line 4158 in /home/jay/Programs/petsc/src/mat/impls/aij/seq/aij.c >>>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [0]PETSC ERROR: MatDuplicate_MPIAIJ() line 3395 in /home/jay/Programs/petsc/src/mat/impls/aij/mpi/mpiaij.c >>>>>> [0]PETSC ERROR: MatDuplicate() line 4116 in /home/jay/Programs/petsc/src/mat/interface/matrix.c >>>>>> [0]PETSC ERROR: TSGetRHSMats_Private() line 605 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: TSComputeIJacobian() line 782 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: SNESTSFormJacobian_ARKIMEX() line 1056 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [0]PETSC ERROR: SNESTSFormJacobian() line 3541 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: SNESComputeJacobian() line 2253 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 231 in /home/jay/Programs/petsc/src/snes/impls/ls/ls.c >>>>>> [0]PETSC ERROR: SNESSolve() line 3812 in /home/jay/Programs/petsc/src/snes/interface/snes.c >>>>>> [0]PETSC ERROR: TSStep_ARKIMEX() line 776 in /home/jay/Programs/petsc/src/ts/impls/arkimex/arkimex.c >>>>>> [0]PETSC ERROR: TSStep() line 2625 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: TSSolve() line 2741 in /home/jay/Programs/petsc/src/ts/interface/ts.c >>>>>> [0]PETSC ERROR: checkPetscError() line 65 in /home/jay/research/xolotl/xolotl_workspace/xolotl-Source at xolotl/xolotlSolver/PetscSolver.cpp >>>>>> >>>>>> -- >>>>>> Jay Jay Billings >>>>>> Oak Ridge National Laboratory >>>>>> Twitter Handle: @jayjaybillings >>>>>> -- Jay Jay Billings Oak Ridge National Laboratory Telephone: (865) 272-9420 Email:billingsjj at ornl.gov Twitter Handle: @jayjaybillings From dharmareddy84 at gmail.com Fri Jan 17 01:31:32 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 17 Jan 2014 01:31:32 -0600 Subject: [petsc-users] SNES realted In-Reply-To: <6934EA83-E20E-48F8-8534-9053C1D95F9F@mcs.anl.gov> References: <6934EA83-E20E-48F8-8534-9053C1D95F9F@mcs.anl.gov> Message-ID: Thanks. Tried the SNESVISetVariableBounds on a non linear Poisson solver. Works well. I was wondering if it makes senes to create a method for setting bounds for fields in the default petsc section used for dof setup. I mean, the user specifies field wise bounds as scalar numbers. Thanks Reddy On Thu, Jan 16, 2014 at 6:47 PM, Barry Smith wrote: > > On Jan 16, 2014, at 6:28 PM, Dharmendar Reddy wrote: > >> Hello, >> I am solving a set of equations with SNES >> F1 (x1,x2,x3) = 0 >> F2 (x1,x2,x3) = 0 >> F3 (x1,x2,x3) = 0 >> >> x1 and x2 are always > 0, how do i enforce that during the line search ? > > You don?t > > This is an example of a variational inequality. You use the SNESType of vinewtonrsls to solve it and call SNESVISetVariableBounds() to set the bounds on the variables. > > Good luck, > > Barry > > > >> >> The system of equations is shown on page 1 of pdf here >> http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf >> >> F1 = equation 1 >> F2 = equation 2 >> F3 = equation 5 >> >> x1 = n, X2=p and X3 = psi >> >> Thanks >> Reddy > -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From rupp at mcs.anl.gov Fri Jan 17 05:01:37 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Fri, 17 Jan 2014 12:01:37 +0100 Subject: [petsc-users] Fixing a non Delaunay mesh In-Reply-To: References: Message-ID: <52D90D91.4030801@mcs.anl.gov> Hi Reddy, > I there a way to fix a non Delauny mesh via call to any > DMPLex routine ? > I am looking at this scenario. > > I calculate the orthocenter of each element. If i find that for some > elements, the othocenter is outside the element, is there any way i > can fix it via a call to DMPLEx routine or do i have to go back to the > mesher and regenerate the mesh ? keep in mind that the Delaunay property only defines the duality of the simplex mesh and its dual (Voronoi) grid. As far as I remember, it does *not* require that each orthocenter is in the interior of the corresponding element. Best regards, Karli From MAJones2 at mdanderson.org Fri Jan 17 11:00:53 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Fri, 17 Jan 2014 17:00:53 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu>, Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1E22@DCPWPEXMBX02.mdanderson.edu> These examples all seem to run excepting the following command, ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem I get the following ouput: ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem Local function: Vec Object: 1 MPI processes type: seq 0 1 1 2 1 2 2 3 1.25 1.25 2.25 2.25 0.25 0.25 1.25 1.25 0.25 1.25 1.25 2.25 0.5 1.5 1.5 0.5 0.5 1.5 0.75 2.125 2.5625 1.8125 1.0625 1.6875 1.375 2.125 2.5625 1.8125 1.0625 1.375 1.625 1.5625 1.3125 1.0625 1.1875 0.875 0.8125 1.0625 0.625 0.5625 0.875 0.6875 1.3125 1.5625 1.625 1.1875 0.625 1.0625 0.8125 0.5625 1.125 2.125 2.5625 1.8125 1.375 1.8125 1.8125 2.0625 1.8125 1.625 1.125 1.125 1.5625 0.8125 0.875 1.3125 1.0625 0.625 0.6875 1.125 1.3125 1.0625 0.875 0.625 0.8125 0.5625 1.5625 1.125 1.1875 1.625 0.5625 0.3125 0.375 0.3125 2.0625 1.625 2.0625 1.625 0.3125 0.5625 0.375 0.3125 0.8125 1.5625 0.875 1.3125 0.125 0.0625 0.1875 0.125 0.3125 0.0625 0.375 0.125 0.3125 0.5625 0.625 0.6875 0.625 1.5625 0.8125 0.875 1.3125 0.0625 1.0625 1.125 1.0625 Initial guess Vec Object: 1 MPI processes type: seq 0.75 1.0625 1.6875 1.375 1.0625 1.375 1.0625 1.1875 0.875 0.5625 0.875 0.6875 1.1875 0.5625 1.375 0.875 0.6875 0.875 0.5625 1.1875 0.375 0.375 0.875 0.1875 0.375 0.6875 0.875 ./ex12: symbol lookup error: /opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so: undefined symbol: omp_get_num_procs ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 6:35 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 5:43 PM, Jones,Martin Alexander > wrote: Hi, This is the next error message after configuring and building with the triangle package when trying to run ex12 This is my fault for bad defaults. I will fix. Try running ./ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 for a representative run. Then you could try 3D ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem or a full run ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate -petscspace_order 1 ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate -petscspace_order 2 Let me know if those work. Thanks, Matt ./ex12 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c [0]PETSC ERROR: [0] SNES user function line 2088 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: [0] SNESComputeFunction line 2076 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c [0]PETSC ERROR: [0] SNESSolve line 3765 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa Thu Jan 16 17:41:23 2014 [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug --download-triangle [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 4:37 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander > wrote: Hi, I have downloaded and built the dev version you suggested. I think I need the triangle package to run this particular case. Is there any thing else that appears wrong in what I have done from the error messages below: Great! Its running. You can reconfigure like this: $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-triangle and then rebuild make and then rerun. You can load meshes, but its much easier to have triangle create them. Thanks for being patient, Matt [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: No support for this operation for this object type! [0]PETSC ERROR: Mesh generation needs external package support. Please reconfigure with --download-triangle.! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa Thu Jan 16 16:28:20 2014 [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local --with-clanguage=c++ --with-c2html=0 --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: DMPlexGenerate() line 4332 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c [0]PETSC ERROR: CreateMesh() line 295 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c [0]PETSC ERROR: main() line 659 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 4:06 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander > wrote: Hi. I changed the ENV variable to the correct entry. when I type make ex12 I get this: mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/home/mjonesa/PETSc/petsc-3.4.3/include -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni -D__INSDIR__=src/snes/examples/tutorials/ ex12.c ex12.c:14:18: fatal error: ex12.h: No such file or directory compilation terminated. make: *** [ex12.o] Error 1 Any help of yours is very much appreciated. Yes, this relates to my 3). This is not going to work for you with the release. Please see the link I sent. Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:58 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander > wrote: Thanks! You built with PETSC_ARCH=arch-linux2-cxx-debug Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:31 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander > wrote: Now I went to the directory where ex12.c sits and just did a ?make ex12.c? with the following error if this helps? : mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No such file or directory /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. Stop. 1) You would type 'make ex12' 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH (linux-gnu-cxx-debug) environment variables do not match what you built. Please send configure.log and make.log 3) Since it was only recently added, if you want to use the FEM functionality, you must use the development version: http://www.mcs.anl.gov/petsc/developers/index.html Thanks, Matt From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Jan 17 11:04:35 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 17 Jan 2014 11:04:35 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1E22@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E22@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Fri, Jan 17, 2014 at 11:00 AM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > These examples all seem to run excepting the following command, > > ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient > field -interpolate 1 -petscspace_order 2 -show_initial > -dm_plex_print_fem > > I get the following ouput: > > ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 > -variable_coefficient field -interpolate 1 -petscspace_order 2 > -show_initial -dm_plex_print_fem > Local function: > ./ex12: symbol lookup error: > /opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so: undefined > symbol: omp_get_num_procs > This is a build problem, but it should affect all the runs. Is this reproducible? Can you send configure.log? MKL is the worst. If this persists, I would just switch to --download-f-blas-lapack. Thanks, Matt > ------------------------------ > *From:* Matthew Knepley [knepley at gmail.com] > *Sent:* Thursday, January 16, 2014 6:35 PM > *To:* Jones,Martin Alexander > *Cc:* petsc-users at mcs.anl.gov > *Subject:* Re: [petsc-users] Problems running ex12.c > > On Thu, Jan 16, 2014 at 5:43 PM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > >> Hi, This is the next error message after configuring and building with >> the triangle package when trying to run ex12 >> > > This is my fault for bad defaults. I will fix. Try running > > ./ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet > -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 > > for a representative run. Then you could try 3D > > ex12 -run_type test -dim 3 -refinement_limit 0.0125 > -variable_coefficient field -interpolate 1 -petscspace_order 2 > -show_initial -dm_plex_print_fem > > or a full run > > ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate > -petscspace_order 1 > > ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate > -petscspace_order 2 > > Let me know if those work. > > Thanks, > > Matt > > >> ./ex12 >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point >> Exception,probably divide by zero >> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger >> [0]PETSC ERROR: or see >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSCERROR: or try >> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory >> corruption errors >> [0]PETSC ERROR: likely location of problem given in stack below >> [0]PETSC ERROR: --------------------- Stack Frames >> ------------------------------------ >> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not >> available, >> [0]PETSC ERROR: INSTEAD the line number of the start of the function >> [0]PETSC ERROR: is given. >> [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 >> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c >> [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 >> /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c >> [0]PETSC ERROR: [0] SNES user function line 2088 >> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: [0] SNESComputeFunction line 2076 >> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 >> /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c >> [0]PETSC ERROR: [0] SNESSolve line 3765 >> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >> [0]PETSC ERROR: --------------------- Error Message >> ------------------------------------ >> [0]PETSC ERROR: Signal received! >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT >> Date: 2014-01-15 20:33:42 -0600 >> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [0]PETSC ERROR: See docs/index.html for manual pages. >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa >> Thu Jan 16 17:41:23 2014 >> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >> [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 >> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >> --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug >> --download-triangle >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: User provided function() line 0 in unknown file >> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >> ------------------------------ >> *From:* Matthew Knepley [knepley at gmail.com] >> *Sent:* Thursday, January 16, 2014 4:37 PM >> *To:* Jones,Martin Alexander >> *Cc:* petsc-users at mcs.anl.gov >> *Subject:* Re: [petsc-users] Problems running ex12.c >> >> On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >>> Hi, I have downloaded and built the dev version you suggested. I think >>> I need the triangle package to run this particular case. Is there any thing >>> else that appears wrong in what I have done from the error messages below: >>> >> >> Great! Its running. You can reconfigure like this: >> >> $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py >> --download-triangle >> >> and then rebuild >> >> make >> >> and then rerun. You can load meshes, but its much easier to have >> triangle create them. >> >> Thanks for being patient, >> >> Matt >> >> >>> [0]PETSC ERROR: --------------------- Error Message >>> ------------------------------------ >>> [0]PETSC ERROR: No support for this operation for this object type! >>> [0]PETSC ERROR: Mesh generation needs external package support. >>> Please reconfigure with --download-triangle.! >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 >>> GIT Date: 2014-01-15 20:33:42 -0600 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa >>> Thu Jan 16 16:28:20 2014 >>> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >>> [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 >>> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >>> --with-clanguage=c++ --with-c2html=0 >>> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: DMPlexGenerate() line 4332 in >>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c >>> [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in >>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c >>> [0]PETSC ERROR: CreateMesh() line 295 in >>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>> [0]PETSC ERROR: main() line 659 in >>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>> application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 >>> ------------------------------ >>> *From:* Matthew Knepley [knepley at gmail.com] >>> *Sent:* Thursday, January 16, 2014 4:06 PM >>> *To:* Jones,Martin Alexander >>> *Cc:* petsc-users at mcs.anl.gov >>> *Subject:* Re: [petsc-users] Problems running ex12.c >>> >>> On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander < >>> MAJones2 at mdanderson.org> wrote: >>> >>>> Hi. I changed the ENV variable to the correct entry. when I type make >>>> ex12 I get this: >>>> >>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>> ex12 >>>> g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing >>>> -Wno-unknown-pragmas -g -fPIC >>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include >>>> -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include >>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni >>>> -D__INSDIR__=src/snes/examples/tutorials/ ex12.c >>>> ex12.c:14:18: fatal error: ex12.h: No such file or directory >>>> compilation terminated. >>>> make: *** [ex12.o] Error 1 >>>> >>>> Any help of yours is very much appreciated. >>>> >>> >>> Yes, this relates to my 3). This is not going to work for you with the >>> release. Please see the link I sent. >>> >>> Matt >>> >>> >>>> ------------------------------ >>>> *From:* Matthew Knepley [knepley at gmail.com] >>>> *Sent:* Thursday, January 16, 2014 3:58 PM >>>> *To:* Jones,Martin Alexander >>>> *Cc:* petsc-users at mcs.anl.gov >>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>> >>>> On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < >>>> MAJones2 at mdanderson.org> wrote: >>>> >>>>> Thanks! >>>>> >>>> >>>> You built with PETSC_ARCH=arch-linux2-cxx-debug >>>> >>>> Matt >>>> >>>> >>>>> ------------------------------ >>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>> *Sent:* Thursday, January 16, 2014 3:31 PM >>>>> *To:* Jones,Martin Alexander >>>>> *Cc:* petsc-users at mcs.anl.gov >>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>> >>>>> On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < >>>>> MAJones2 at mdanderson.org> wrote: >>>>> >>>>>> Now I went to the directory where ex12.c sits and just did a ?make >>>>>> ex12.c? with the following error if this helps? : >>>>>> >>>>>> >>>>>> >>>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>>>> ex12.c >>>>>> >>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >>>>>> such file or directory >>>>>> >>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >>>>>> such file or directory >>>>>> >>>>>> make: *** No rule to make target >>>>>> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >>>>>> Stop. >>>>>> >>>>> >>>>> 1) You would type 'make ex12' >>>>> >>>>> 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or >>>>> PETSC_ARCH (linux-gnu-cxx-debug) environment variables >>>>> do not match what you built. Please send configure.log and make.log >>>>> >>>>> 3) Since it was only recently added, if you want to use the FEM >>>>> functionality, you must use the development version: >>>>> >>>>> http://www.mcs.anl.gov/petsc/developers/index.html >>>>> >>>>> Thanks, >>>>> >>>>> Matt >>>>> >>>>> >>>>>> >>>>>> >>>>>> *From:* Matthew Knepley [mailto:knepley at gmail.com] >>>>>> *Sent:* Thursday, January 16, 2014 2:48 PM >>>>>> *To:* Jones,Martin Alexander >>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>> >>>>>> >>>>>> >>>>>> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >>>>>> MAJones2 at mdanderson.org> wrote: >>>>>> >>>>>> Hello To Whom it Concerns, >>>>>> >>>>>> >>>>>> >>>>>> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >>>>>> dim order dim 1 laplacian dim order dim 1 boundary >>>>>> src/snes/examples/tutorials/ex12.h' >>>>>> but getting the following error: >>>>>> >>>>>> >>>>>> >>>>>> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >>>>>> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >>>>>> Traceback (most recent call last): >>>>>> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in >>>>>> >>>>>> from FIAT.reference_element import default_simplex >>>>>> ImportError: No module named FIAT.reference_element >>>>>> >>>>>> >>>>>> I have removed the requirement of generating the header file (its now >>>>>> all handled in C). I thought >>>>>> >>>>>> I changed the documentation everywhere (including the latest tutorial >>>>>> slides). Can you try running >>>>>> >>>>>> with 'master' (or 'next'), and point me toward the old docs? >>>>>> >>>>>> >>>>>> >>>>>> Thanks, >>>>>> >>>>>> >>>>>> >>>>>> Matt >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> What most experimenters take for granted before they begin their >>>>>> experiments is infinitely more interesting than any results to which their >>>>>> experiments lead. >>>>>> -- Norbert Wiener >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> What most experimenters take for granted before they begin their >>>>> experiments is infinitely more interesting than any results to which their >>>>> experiments lead. >>>>> -- Norbert Wiener >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From MAJones2 at mdanderson.org Fri Jan 17 11:06:54 2014 From: MAJones2 at mdanderson.org (Jones,Martin Alexander) Date: Fri, 17 Jan 2014 17:06:54 +0000 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E22@DCPWPEXMBX02.mdanderson.edu>, Message-ID: <8448FFCE4362914496BCEAF8BE810C13EF1E50@DCPWPEXMBX02.mdanderson.edu> ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Friday, January 17, 2014 11:04 AM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Fri, Jan 17, 2014 at 11:00 AM, Jones,Martin Alexander > wrote: These examples all seem to run excepting the following command, ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem I get the following ouput: ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem Local function: ./ex12: symbol lookup error: /opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so: undefined symbol: omp_get_num_procs This is a build problem, but it should affect all the runs. Is this reproducible? Can you send configure.log? MKL is the worst. If this persists, I would just switch to --download-f-blas-lapack. Thanks, Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 6:35 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 5:43 PM, Jones,Martin Alexander > wrote: Hi, This is the next error message after configuring and building with the triangle package when trying to run ex12 This is my fault for bad defaults. I will fix. Try running ./ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 for a representative run. Then you could try 3D ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem or a full run ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate -petscspace_order 1 ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate -petscspace_order 2 Let me know if those work. Thanks, Matt ./ex12 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c [0]PETSC ERROR: [0] SNES user function line 2088 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: [0] SNESComputeFunction line 2076 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c [0]PETSC ERROR: [0] SNESSolve line 3765 /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa Thu Jan 16 17:41:23 2014 [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug --download-triangle [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 4:37 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander > wrote: Hi, I have downloaded and built the dev version you suggested. I think I need the triangle package to run this particular case. Is there any thing else that appears wrong in what I have done from the error messages below: Great! Its running. You can reconfigure like this: $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-triangle and then rebuild make and then rerun. You can load meshes, but its much easier to have triangle create them. Thanks for being patient, Matt [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: No support for this operation for this object type! [0]PETSC ERROR: Mesh generation needs external package support. Please reconfigure with --download-triangle.! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 GIT Date: 2014-01-15 20:33:42 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa Thu Jan 16 16:28:20 2014 [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local --with-clanguage=c++ --with-c2html=0 --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: DMPlexGenerate() line 4332 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c [0]PETSC ERROR: CreateMesh() line 295 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c [0]PETSC ERROR: main() line 659 in /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 4:06 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander > wrote: Hi. I changed the ENV variable to the correct entry. when I type make ex12 I get this: mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12 g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/home/mjonesa/PETSc/petsc-3.4.3/include -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni -D__INSDIR__=src/snes/examples/tutorials/ ex12.c ex12.c:14:18: fatal error: ex12.h: No such file or directory compilation terminated. make: *** [ex12.o] Error 1 Any help of yours is very much appreciated. Yes, this relates to my 3). This is not going to work for you with the release. Please see the link I sent. Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:58 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander > wrote: Thanks! You built with PETSC_ARCH=arch-linux2-cxx-debug Matt ________________________________ From: Matthew Knepley [knepley at gmail.com] Sent: Thursday, January 16, 2014 3:31 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander > wrote: Now I went to the directory where ex12.c sits and just did a ?make ex12.c? with the following error if this helps? : mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make ex12.c /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No such file or directory /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No such file or directory make: *** No rule to make target `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. Stop. 1) You would type 'make ex12' 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or PETSC_ARCH (linux-gnu-cxx-debug) environment variables do not match what you built. Please send configure.log and make.log 3) Since it was only recently added, if you want to use the FEM functionality, you must use the development version: http://www.mcs.anl.gov/petsc/developers/index.html Thanks, Matt From: Matthew Knepley [mailto:knepley at gmail.com] Sent: Thursday, January 16, 2014 2:48 PM To: Jones,Martin Alexander Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Problems running ex12.c On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander > wrote: Hello To Whom it Concerns, I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h' but getting the following error: $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h Traceback (most recent call last): File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, in from FIAT.reference_element import default_simplex ImportError: No module named FIAT.reference_element I have removed the requirement of generating the header file (its now all handled in C). I thought I changed the documentation everywhere (including the latest tutorial slides). Can you try running with 'master' (or 'next'), and point me toward the old docs? Thanks, Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... 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Name: configure.log Type: text/x-log Size: 1417333 bytes Desc: configure.log URL: From knepley at gmail.com Fri Jan 17 11:29:11 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 17 Jan 2014 11:29:11 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: <8448FFCE4362914496BCEAF8BE810C13EF1E50@DCPWPEXMBX02.mdanderson.edu> References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E22@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E50@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Fri, Jan 17, 2014 at 11:06 AM, Jones,Martin Alexander < MAJones2 at mdanderson.org> wrote: > > ------------------------------ > *From:* Matthew Knepley [knepley at gmail.com] > *Sent:* Friday, January 17, 2014 11:04 AM > *To:* Jones,Martin Alexander > *Cc:* petsc-users at mcs.anl.gov > *Subject:* Re: [petsc-users] Problems running ex12.c > > On Fri, Jan 17, 2014 at 11:00 AM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > >> These examples all seem to run excepting the following command, >> >> ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient >> field -interpolate 1 -petscspace_order 2 -show_initial >> -dm_plex_print_fem >> >> I get the following ouput: >> >> ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 >> -variable_coefficient field -interpolate 1 -petscspace_order 2 >> -show_initial -dm_plex_print_fem >> Local function: >> ./ex12: symbol lookup error: >> /opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so: undefined >> symbol: omp_get_num_procs >> > > This is a build problem, but it should affect all the runs. Is this > reproducible? Can you send configure.log? MKL is the worst. If this > persists, I would just switch to --download-f-blas-lapack. > Thanks. I have some advice on options --with-precision=single # I would not use this unless you are doing something special, like CUDA --with-clanguage=C++ # I would recommend switching to C, the build is much faster --with-mpi-dir=/usr --with-mpi4py=0 --with-shared-libraries --CFLAGS=-O0 --CXXFLAGS=-O0 --with-fc=0 --with-etags=1 # This is unnecessary --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" # Here is the problem, see below --download-metis --download-fiat=yes --download-generator --download-scientificpython # Get rid of these, they are obsolete Your MKL needs another library for the OpenMP symbols. I would recommend switching to --download-f2cblaslapack, or you can try and find that library. Thanks, Matt > Thanks, > > Matt > > >> ------------------------------ >> *From:* Matthew Knepley [knepley at gmail.com] >> *Sent:* Thursday, January 16, 2014 6:35 PM >> *To:* Jones,Martin Alexander >> *Cc:* petsc-users at mcs.anl.gov >> *Subject:* Re: [petsc-users] Problems running ex12.c >> >> On Thu, Jan 16, 2014 at 5:43 PM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >>> Hi, This is the next error message after configuring and building with >>> the triangle package when trying to run ex12 >>> >> >> This is my fault for bad defaults. I will fix. Try running >> >> ./ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet >> -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 >> >> for a representative run. Then you could try 3D >> >> ex12 -run_type test -dim 3 -refinement_limit 0.0125 >> -variable_coefficient field -interpolate 1 -petscspace_order 2 >> -show_initial -dm_plex_print_fem >> >> or a full run >> >> ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate >> -petscspace_order 1 >> >> ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate >> -petscspace_order 2 >> >> Let me know if those work. >> >> Thanks, >> >> Matt >> >> >>> ./ex12 >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point >>> Exception,probably divide by zero >>> [0]PETSC ERROR: Try option -start_in_debugger or >>> -on_error_attach_debugger >>> [0]PETSC ERROR: or see >>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSCERROR: or try >>> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory >>> corruption errors >>> [0]PETSC ERROR: likely location of problem given in stack below >>> [0]PETSC ERROR: --------------------- Stack Frames >>> ------------------------------------ >>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not >>> available, >>> [0]PETSC ERROR: INSTEAD the line number of the start of the >>> function >>> [0]PETSC ERROR: is given. >>> [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 >>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c >>> [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 >>> /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c >>> [0]PETSC ERROR: [0] SNES user function line 2088 >>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESComputeFunction line 2076 >>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 >>> /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c >>> [0]PETSC ERROR: [0] SNESSolve line 3765 >>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>> [0]PETSC ERROR: --------------------- Error Message >>> ------------------------------------ >>> [0]PETSC ERROR: Signal received! >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 >>> GIT Date: 2014-01-15 20:33:42 -0600 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by mjonesa >>> Thu Jan 16 17:41:23 2014 >>> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >>> [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 >>> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >>> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >>> --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug >>> --download-triangle >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: User provided function() line 0 in unknown file >>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>> ------------------------------ >>> *From:* Matthew Knepley [knepley at gmail.com] >>> *Sent:* Thursday, January 16, 2014 4:37 PM >>> *To:* Jones,Martin Alexander >>> *Cc:* petsc-users at mcs.anl.gov >>> *Subject:* Re: [petsc-users] Problems running ex12.c >>> >>> On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander < >>> MAJones2 at mdanderson.org> wrote: >>> >>>> Hi, I have downloaded and built the dev version you suggested. I >>>> think I need the triangle package to run this particular case. Is there any >>>> thing else that appears wrong in what I have done from the error messages >>>> below: >>>> >>> >>> Great! Its running. You can reconfigure like this: >>> >>> $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py >>> --download-triangle >>> >>> and then rebuild >>> >>> make >>> >>> and then rerun. You can load meshes, but its much easier to have >>> triangle create them. >>> >>> Thanks for being patient, >>> >>> Matt >>> >>> >>>> [0]PETSC ERROR: --------------------- Error Message >>>> ------------------------------------ >>>> [0]PETSC ERROR: No support for this operation for this object type! >>>> [0]PETSC ERROR: Mesh generation needs external package support. >>>> Please reconfigure with --download-triangle.! >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 >>>> GIT Date: 2014-01-15 20:33:42 -0600 >>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by >>>> mjonesa Thu Jan 16 16:28:20 2014 >>>> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >>>> [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 >>>> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >>>> --with-clanguage=c++ --with-c2html=0 >>>> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: DMPlexGenerate() line 4332 in >>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c >>>> [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in >>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c >>>> [0]PETSC ERROR: CreateMesh() line 295 in >>>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>>> [0]PETSC ERROR: main() line 659 in >>>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>>> application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 >>>> ------------------------------ >>>> *From:* Matthew Knepley [knepley at gmail.com] >>>> *Sent:* Thursday, January 16, 2014 4:06 PM >>>> *To:* Jones,Martin Alexander >>>> *Cc:* petsc-users at mcs.anl.gov >>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>> >>>> On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander < >>>> MAJones2 at mdanderson.org> wrote: >>>> >>>>> Hi. I changed the ENV variable to the correct entry. when I type >>>>> make ex12 I get this: >>>>> >>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>>> ex12 >>>>> g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing >>>>> -Wno-unknown-pragmas -g -fPIC >>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include >>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include >>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni >>>>> -D__INSDIR__=src/snes/examples/tutorials/ ex12.c >>>>> ex12.c:14:18: fatal error: ex12.h: No such file or directory >>>>> compilation terminated. >>>>> make: *** [ex12.o] Error 1 >>>>> >>>>> Any help of yours is very much appreciated. >>>>> >>>> >>>> Yes, this relates to my 3). This is not going to work for you with >>>> the release. Please see the link I sent. >>>> >>>> Matt >>>> >>>> >>>>> ------------------------------ >>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>> *Sent:* Thursday, January 16, 2014 3:58 PM >>>>> *To:* Jones,Martin Alexander >>>>> *Cc:* petsc-users at mcs.anl.gov >>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>> >>>>> On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < >>>>> MAJones2 at mdanderson.org> wrote: >>>>> >>>>>> Thanks! >>>>>> >>>>> >>>>> You built with PETSC_ARCH=arch-linux2-cxx-debug >>>>> >>>>> Matt >>>>> >>>>> >>>>>> ------------------------------ >>>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>>> *Sent:* Thursday, January 16, 2014 3:31 PM >>>>>> *To:* Jones,Martin Alexander >>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>> >>>>>> On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < >>>>>> MAJones2 at mdanderson.org> wrote: >>>>>> >>>>>>> Now I went to the directory where ex12.c sits and just did a ?make >>>>>>> ex12.c? with the following error if this helps? : >>>>>>> >>>>>>> >>>>>>> >>>>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>>>>> ex12.c >>>>>>> >>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >>>>>>> such file or directory >>>>>>> >>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >>>>>>> such file or directory >>>>>>> >>>>>>> make: *** No rule to make target >>>>>>> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >>>>>>> Stop. >>>>>>> >>>>>> >>>>>> 1) You would type 'make ex12' >>>>>> >>>>>> 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or >>>>>> PETSC_ARCH (linux-gnu-cxx-debug) environment variables >>>>>> do not match what you built. Please send configure.log and >>>>>> make.log >>>>>> >>>>>> 3) Since it was only recently added, if you want to use the FEM >>>>>> functionality, you must use the development version: >>>>>> >>>>>> http://www.mcs.anl.gov/petsc/developers/index.html >>>>>> >>>>>> Thanks, >>>>>> >>>>>> Matt >>>>>> >>>>>> >>>>>>> >>>>>>> >>>>>>> *From:* Matthew Knepley [mailto:knepley at gmail.com] >>>>>>> *Sent:* Thursday, January 16, 2014 2:48 PM >>>>>>> *To:* Jones,Martin Alexander >>>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >>>>>>> MAJones2 at mdanderson.org> wrote: >>>>>>> >>>>>>> Hello To Whom it Concerns, >>>>>>> >>>>>>> >>>>>>> >>>>>>> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >>>>>>> dim order dim 1 laplacian dim order dim 1 boundary >>>>>>> src/snes/examples/tutorials/ex12.h' >>>>>>> but getting the following error: >>>>>>> >>>>>>> >>>>>>> >>>>>>> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >>>>>>> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >>>>>>> Traceback (most recent call last): >>>>>>> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, >>>>>>> in >>>>>>> from FIAT.reference_element import default_simplex >>>>>>> ImportError: No module named FIAT.reference_element >>>>>>> >>>>>>> >>>>>>> I have removed the requirement of generating the header file (its >>>>>>> now all handled in C). I thought >>>>>>> >>>>>>> I changed the documentation everywhere (including the latest >>>>>>> tutorial slides). Can you try running >>>>>>> >>>>>>> with 'master' (or 'next'), and point me toward the old docs? >>>>>>> >>>>>>> >>>>>>> >>>>>>> Thanks, >>>>>>> >>>>>>> >>>>>>> >>>>>>> Matt >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> What most experimenters take for granted before they begin their >>>>>>> experiments is infinitely more interesting than any results to which their >>>>>>> experiments lead. >>>>>>> -- Norbert Wiener >>>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> What most experimenters take for granted before they begin their >>>>>> experiments is infinitely more interesting than any results to which their >>>>>> experiments lead. >>>>>> -- Norbert Wiener >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> What most experimenters take for granted before they begin their >>>>> experiments is infinitely more interesting than any results to which their >>>>> experiments lead. >>>>> -- Norbert Wiener >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Fri Jan 17 13:03:36 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 17 Jan 2014 13:03:36 -0600 Subject: [petsc-users] Fixing a non Delaunay mesh In-Reply-To: <52D90D91.4030801@mcs.anl.gov> References: <52D90D91.4030801@mcs.anl.gov> Message-ID: I should have worded the problem differently. I intended to say, fix an element to have its orthocenter inside the element to avoid errors in approximating the flux along an edge. Thanks Reddy On Fri, Jan 17, 2014 at 5:01 AM, Karl Rupp wrote: > Hi Reddy, > > >> I there a way to fix a non Delauny mesh via call to any >> >> DMPLex routine ? >> I am looking at this scenario. >> >> I calculate the orthocenter of each element. If i find that for some >> elements, the othocenter is outside the element, is there any way i >> can fix it via a call to DMPLEx routine or do i have to go back to the >> mesher and regenerate the mesh ? > > > keep in mind that the Delaunay property only defines the duality of the > simplex mesh and its dual (Voronoi) grid. As far as I remember, it does > *not* require that each orthocenter is in the interior of the corresponding > element. > > Best regards, > Karli > From dharmareddy84 at gmail.com Fri Jan 17 15:17:46 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 17 Jan 2014 15:17:46 -0600 Subject: [petsc-users] using SNES_VI_INF in variable initialization Message-ID: Hello, I am not sure if this is a petsc related issue. I am trying to use SNES_VI_{INF,NINF} to initialize a variable as shown below in the code. The code does not compile...How do i fix it ? Looks like SNES_VI_INF is not available via petscdef.h module test_m implicit none #include "finclude/petscdef.h" type Var_t real :: lb = SNES_VI_NINF real :: ub = SNES_VI_INF end type Var_t end module test_m program test implicit none #include "finclude/petsc.h" PetscErrorCode ierr type(Var_t) :: Var call PetscInitialize(PETSC_NULL_CHARACTER, ierr) print*, 'lb=',Var%lb print*, 'ub=',Var%ub call PetscFinalize(ierr) end program test From bsmith at mcs.anl.gov Fri Jan 17 15:36:02 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 17 Jan 2014 15:36:02 -0600 Subject: [petsc-users] using SNES_VI_INF in variable initialization In-Reply-To: References: Message-ID: Sorry, it is missing from Fortran. Use 1.0e20 and -1.0e20 for the values Barry Request-assigned: Barry define SNES_VI_INF and NINF for Fortran On Jan 17, 2014, at 3:17 PM, Dharmendar Reddy wrote: > Hello, > I am not sure if this is a petsc related issue. I am trying to > use SNES_VI_{INF,NINF} to initialize a variable as shown below in the > code. The code does not compile...How do i fix it ? Looks like > SNES_VI_INF is not available via petscdef.h > > module test_m > implicit none > #include "finclude/petscdef.h" > type Var_t > real :: lb = SNES_VI_NINF > real :: ub = SNES_VI_INF > end type Var_t > end module test_m > > program test > implicit none > #include "finclude/petsc.h" > PetscErrorCode ierr > type(Var_t) :: Var > call PetscInitialize(PETSC_NULL_CHARACTER, ierr) > print*, 'lb=',Var%lb > print*, 'ub=',Var%ub > call PetscFinalize(ierr) > end program test From dharmareddy84 at gmail.com Fri Jan 17 15:38:27 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 17 Jan 2014 15:38:27 -0600 Subject: [petsc-users] using SNES_VI_INF in variable initialization In-Reply-To: References: Message-ID: Ok, i fixed my code with the values. But was making sure if the usage pattern is correct. Thanks Reddy On Fri, Jan 17, 2014 at 3:36 PM, Barry Smith wrote: > > Sorry, it is missing from Fortran. Use 1.0e20 and -1.0e20 for the values > > Barry > > Request-assigned: Barry define SNES_VI_INF and NINF for Fortran > > On Jan 17, 2014, at 3:17 PM, Dharmendar Reddy wrote: > >> Hello, >> I am not sure if this is a petsc related issue. I am trying to >> use SNES_VI_{INF,NINF} to initialize a variable as shown below in the >> code. The code does not compile...How do i fix it ? Looks like >> SNES_VI_INF is not available via petscdef.h >> >> module test_m >> implicit none >> #include "finclude/petscdef.h" >> type Var_t >> real :: lb = SNES_VI_NINF >> real :: ub = SNES_VI_INF >> end type Var_t >> end module test_m >> >> program test >> implicit none >> #include "finclude/petsc.h" >> PetscErrorCode ierr >> type(Var_t) :: Var >> call PetscInitialize(PETSC_NULL_CHARACTER, ierr) >> print*, 'lb=',Var%lb >> print*, 'ub=',Var%ub >> call PetscFinalize(ierr) >> end program test > -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From bsmith at mcs.anl.gov Fri Jan 17 15:47:51 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 17 Jan 2014 15:47:51 -0600 Subject: [petsc-users] SNESSetFunction and MatMFFDSetFunction In-Reply-To: References: <10F9F249-BD2C-4A5A-B0E5-3B86FF831C50@mcs.anl.gov> <87fvp6wgu2.fsf@jedbrown.org> <52C6FEE7.8060005@newmerical.com> <4CAC0C20-40D3-408C-A98C-2162AD378ACB@mcs.anl.gov> Message-ID: On Jan 16, 2014, at 10:49 AM, Song Gao wrote: > I was looking at the example of MatMFFDSetFunction on website. > http://www.mcs.anl.gov/petsc/petsc-current/src/snes/examples/tutorials/ex22.c.html > I think, the line 312, the last snes should be ctx. > 312: MatMFFDSetFunction(*A,(PetscErrorCode (*)(void*,Vec,Vec))SNESComputeFunction > ,snes); No the code as in the example is correct. The first argument to SNESComputeFunction() is the SNES object http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/SNES/SNESComputeFunction.html#SNESComputeFunction > > > > > On Thu, Jan 16, 2014 at 11:04 AM, Song Gao wrote: > Thank you. > > I have found the bug in my codes. SNESSetFunction and MatMFFDSetFunction expect functions with different interfaces, but I passed the same function to them. > > > On Wed, Jan 8, 2014 at 11:52 PM, Barry Smith wrote: > > I suspect the problem is here: > > > > > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, > > > > @ ierrpet) > > In fact I am surprised it didn?t crash at this line, since we don?t have code to handle the PETSC_NULL_INTEGER > > Try adding the > > > call SNESGetFunction(snes,f,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,ierrpet); > > before the > > > MatMFFDSetBase(myJctx%mf,x,f,ierrpet); > > that I suggested before. > > Does that change anything? > > If you still get different values here is how I would debug it next > > 1) 1 process > > 2) run each version separately in the debugger (you can use the options -start_in_debugger noxterm ) > > 3) put a break point in MatMult(). In most debuggers you just use > > b MatMult > > 4) then type c to continue > > 5) when it stops in MatMult do > > VecView(x,0) > > 6) make sure both versions produce the exact same numbers (do they?) > > 7) then type next several times until it gets to the PetscFunctionReturn(0) line > > 8) do > > VecView(y,0) > > again are both answers identical? By all logic they will be different since the norms you print are different. > > If (6) produces the same numbers but (8) produces different ones then put a break point in MatMult_MFFD() > and call VecView() on ctx->current_u ctx->current_f and a. For both versions they should be the same. Are they? > > Barry > > > > On Jan 8, 2014, at 10:47 AM, Song Gao wrote: > > > Dear Barry, > > > > Thanks for reply. I basically implemented your codes. Then I have two > > questions. > > > > The first is I'm working on Fortran. So I can't use MatShellSetContext to > > set the structure. Therefore I let the variable I want to set, MyJctx, to > > be global. Is there other way to do that? > > > > The second question is I did some tests. let the D vec to be zero, I > > expect the code which I explicit set the matrix-free jacobian and the code > > which I use runtime option -snes_mf give the same residual history. But it > > doesn't. > > > > Here is the histories for > > > > -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type none -snes_view -snes_linesearch_type basic > > > > 0 SNES Function norm 4.272952196300e-02 > > > > 0 KSP Residual norm 4.272952196300e-02 > > 1 KSP Residual norm 4.234712668718e-02 > > 2 KSP Residual norm 3.683301946690e-02 > > > > 3 KSP Residual norm 3.465586805169e-02 > > > > 4 KSP Residual norm 3.452667066800e-02 > > 5 KSP Residual norm 3.451739518719e-02 > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 1 SNES Function norm 4.203973403992e-02 > > > > 0 KSP Residual norm 4.203973403992e-02 > > > > 1 KSP Residual norm 4.203070641961e-02 > > 2 KSP Residual norm 4.202387940443e-02 > > 3 KSP Residual norm 4.183739347023e-02 > > 4 KSP Residual norm 4.183629424897e-02 > > > > 5 KSP Residual norm 4.159456024825e-02 > > > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 2 SNES Function norm 4.200901009970e-02 > > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 > > > > > > Here is the histories for > > -snes_mf -snes_monitor -ksp_max_it 5 -snes_converged_reason -snes_max_it 2 -ksp_converged_reason -ksp_monitor -snes_max_linear_solve_fail 300 -pc_type none -snes_view -snes_linesearch_type basic > > > > > > 0 SNES Function norm 4.272952196300e-02 > > 0 KSP Residual norm 4.272952196300e-02 > > 1 KSP Residual norm 4.270267664569e-02 > > 2 KSP Residual norm 3.690026921954e-02 > > > > 3 KSP Residual norm 3.681740616743e-02 > > > > 4 KSP Residual norm 3.464377294985e-02 > > 5 KSP Residual norm 3.464376048536e-02 > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 1 SNES Function norm 3.461633424373e-02 > > > > 0 KSP Residual norm 3.461633424373e-02 > > > > 1 KSP Residual norm 3.461632119472e-02 > > 2 KSP Residual norm 3.406130197963e-02 > > 3 KSP Residual norm 3.406122155751e-02 > > 4 KSP Residual norm 3.403393397001e-02 > > > > 5 KSP Residual norm 3.403367748538e-02 > > > > Linear solve did not converge due to DIVERGED_ITS iterations 5 > > 2 SNES Function norm 3.403367847002e-02 > > Nonlinear solve did not converge due to DIVERGED_MAX_IT iterations 2 > > > > > > We can see that at 0 SNES 1 KSP step, the residual norms are different. Did I do something wrong here? > > > > The codes are like > > > > type MyJContext > > Mat mf > > Vec D > > Vec work > > end type MyJContext > > > > c > > > > type(MyJContext) myJctx > > > > -------------------------------------------------------------------------- > > call SNESCreate(PETSC_COMM_WORLD, snes, ierpetsc) > > call SNESSetFunction(snes, pet_rhs_snes, flowsolrhs, ctx, > > > > @ ierpetsc) > > > > c > > call MatCreateSNESMF(snes, myJctx%mf, ierpetsc) > > call MatMFFDSetFunction(myJctx%mf, flowsolrhs, ctx, ierpetsc) > > call VecDuplicate(pet_solu_snes, myJctx%D, ierpetsc) > > > > call VecDuplicate(pet_solu_snes, myJctx%work, ierpetsc) > > > > call VecSet(myJctx%D, 0.0D-3, ierpetsc) > > call MatCreateShell(PETSC_COMM_WORLD, pet_nfff, pet_nfff, > > @ PETSC_DETERMINE, PETSC_DETERMINE, ctx, myJ, ierpetsc) > > > > call MatShellSetOperation(myJ, MATOP_MULT, mymultply, > > > > @ ierpetsc) > > call SNESSetJacobian(snes, myJ, pet_mat_pre, > > @ flowsoljac, ctx, ierpetsc) > > > > -------------------------------------------------------------------------- > > > > > > subroutine mymultply ( A, x, y, ierpet) > > Mat :: A > > Vec :: x, y > > PetscErrorCode :: ierpet > > c > > call MatMult(myJctx%mf,x,y, ierpet) > > c > > end > > -------------------------------------------------------------------------- > > > > > > subroutine flowsoljac ( snes, pet_solu_snes, pet_mat_snes, > > @ pet_mat_pre, flag, ctxx, ierrpet ) > > > > c explicitly assemble pet_mat_pre matrix here > > c ......... > > c ......... > > > > call MatMFFDSetBase(myJctx%mf, pet_solu_snes, PETSC_NULL_INTEGER, > > > > @ ierrpet) > > > > end > > > > > > > > > > On Fri, Jan 3, 2014 at 6:46 PM, Barry Smith wrote: > > > > Dario, > > > > Your discussion below (SOR, ILU(200)) seems to imply that you are providing some actual explicit representation of the Jacobian, not just doing something completely matrix free. Is this correct? But the PETSc MatMFFD() is completely matrix free, it provides only a matrix-vector product and no access to the matrix entries, hence I am slightly confused. > > > > If you wish to use for the Jacobian something like D + J and do it completely matrix free then rather than than monkeying with ?changing the function? I would > > use the ?correct" function to compute J x using matrix free multiply and then apply the D to as an additional operation. Hence you would do something like > > > > typedef struct { /* data structure to store the usual matrix free matrix and the additional diagonal matrix */ > > Mat mf; > > Vec D; > > Vec work; > > } MyJContext; > > > > MyJContext myJctx; > > > > MatCreateSNESMF(SNES,&myJctx.mf); /* create the usual MFFD matrix using the real nonlinear function */ > > MatMFFDSetFunction(myJctx.mf,yournonlinearfunction,nonlinearfunctionctx); > > VecCreate(comm,&myJctx.D); > > /* set the correct sizes for D and fill up with your diagonal matrix entries */ > > VecDuplicate(&myJctx.D,&myJCtx.work); > > MatCreateShell(comm,?. &myJ); > > MatShellSetOperation(myJ,MATOP_MULT, mymultiply); > > MatShellSetContext(myJ,&myJctx); > > SNESSetJacobian(snes,myJ,myJ, myJFunction,NULL); > > > > where > > > > PetscErrorCode mymultply(Mat A,Vec x,Vec y) /* computes y = J x + D x > > { > > MyJContext *myJctx; > > > > MatShellGetContext(A,&myJctx); > > MatMult(myJctx->mf,x,y); > > VecPointwiseMult(myJctx->D,x,myJctx->work); > > VecAXPY(y,1.myJctx->work); > > } > > > > and > > > > PetscErrorCode myJFunction(SNES snes,Vec x,Mat *A,Mat *B,MatStructure *str,void* ctx) > > > > /* this is called for each new ?Jacobian? to set the point at which it is computed */ > > { > > MyJContext *myJctx; > > Vec f; > > MatShellGetContext(*A,&myJctx); > > SNESGetFunction(snes,&f); > > MatMFFDSetBase(myJctx->mf,x,f); > > > > /* change the D entries if they depend on the current solution etc */ > > return 0; > > } > > > > Sorry now that I have typed it out it looks a bit more complicated then it really is. It does what you want but without any trickery or confusing code. > > > > But, of course, since it is completely matrix free you cannot use SOR with it. Of course by making D suitably large you can make it as well conditioned as you want and thus get rapid linear convergence (though that may slow down or ruin the nonlinear convergence). > > > > Hope this helps, > > > > Barry > > > > > > > > > > > > On Jan 3, 2014, at 12:18 PM, Dario Isola wrote: > > > > > Dear, Barry and Jed, > > > > > > Thanks for your replies. > > > > > > We understand your doubts, so let me to put our question into context. In CFD it is standard practice to solve non-linear equations of conservation for steady flows by means of a inexact Newton method. The original Jacobian matrix is modified by adding terms on the diagonal which are proportional to the Courant number and to the lumped mass matrix. This allows us to obtain two things, "relax" the solution update and increase the diagonal dominance of the matrix itself. > > > > > > The latter is key when simple preconditioners are adopted, in our case point Jacobi or SOR. Indeed, if the original matrix was to be used, the GMRES method would converge only on very regular meshes and only when adopting ILU preconditioners with a very high level of fill-in. As result a higher number of non-linear iterations is traded with a simpler linear system to be solved. > > > > > > While exploring the SNES+MF capabilities we found out that we could successfully solve the linear system only with ILU(200) or so. Of course we do not want to touch the function used to evaluate the residual, which determines the final solution. However we think that a suitable modification of the function that Petsc differences to compute the matrix vector product would allow us to obtain a behavior similar to the inexact Newton method. > > > > > > Best regards, > > > Dario > > > > > > > > > On 01/03/2014 12:32 PM, Song Gao wrote: > > >> > > >> > > >> ---------- Forwarded message ---------- > > >> From: Jed Brown > > >> Date: Thu, Jan 2, 2014 at 10:20 AM > > >> Subject: Re: [petsc-users] SNESSetFunction and MatMFFDSetFunction > > >> To: Song Gao , Barry Smith > > >> Cc: petsc-users > > >> > > >> > > >> Song Gao writes: > > >> > > >> > Thanks, Barry. > > >> > > > >> > I mean 2) providing a function that I want PETSc to difference to evaluate > > >> > the matrix vector product. > > >> > > > >> > I want to make a slight modification of the matrix after PETSc evaluate the > > >> > matrix vector product. > > >> > > >> Performing a matrix-vector product is not supposed to modify the matrix. > > >> It's unlikely that you really want this. > > >> > > >> > > >> On Wed, Jan 1, 2014 at 3:01 PM, Barry Smith wrote: > > >> > > >> On Jan 1, 2014, at 11:09 AM, Song Gao wrote: > > >> > > >> > Dear all, > > >> > > > >> > Happy new year! > > >> > > > >> > I'm using the matrix-free method to solve NS equations. I call the SNESSetFunction to set the RHS function. I think SNES also uses that RHS function to evaluate the matrix vector product. > > >> > > >> Yes, PETSc differences this function to evaluate the matrix vector product. > > >> > > >> > > > >> > But I want to set one function to evaluate the residual, and another different function to evaluate the matrix vector product. > > >> > > >> Are you providing a function that > > >> > > >> 1) actually evaluates the matrix vector product or are you > > >> > > >> 2) providing a function that you want PETSc to difference to evaluate the matrix vector product? > > >> > > >> > How can I do that? Does MatMFFDSetFunction do this job? > > >> > > >> For 2) yes, but if the function you provide is different than the function provided with SNESSetFunction then the matrix-vector product obtained from differencing it will not be ?correct? Jacobian for the SNESSetFunction() you are providing so I don?t see why you would do it. > > >> > > >> For 1) you should use MatCreateShell() and MatShellSetOperation(mat,MATOP_MULT, ?.) and then pass that matrix to SNESSetJacobian(), then PETSc will use that ?matrix? to do its matrix-vector products. > > >> > > >> Barry > > >> > > >> > > >> > > >> > > > >> > Any suggestion is appreciated. Thank you. > > >> > > > >> > > > >> > Song > > >> > > > > > > > > > > From dharmareddy84 at gmail.com Fri Jan 17 16:58:21 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Fri, 17 Jan 2014 16:58:21 -0600 Subject: [petsc-users] SNESSetVariableBounds Message-ID: Hello, Can i destroy the ub and lb vectors after call to SNESSetVariableBounds ? Reddy From bsmith at mcs.anl.gov Fri Jan 17 17:18:21 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 17 Jan 2014 17:18:21 -0600 Subject: [petsc-users] SNESSetVariableBounds In-Reply-To: References: Message-ID: PETSc actually increases the reference counts for the Vecs so yes you can call VecDestroy() on them immediately after the set call. DO NOT use the vectors for some other purpose because it will overwrite the values you set. Barry On Jan 17, 2014, at 4:58 PM, Dharmendar Reddy wrote: > Hello, > Can i destroy the ub and lb vectors after call to SNESSetVariableBounds ? > > Reddy From abarua at iit.edu Sat Jan 18 01:33:15 2014 From: abarua at iit.edu (amlan barua) Date: Sat, 18 Jan 2014 13:03:15 +0530 Subject: [petsc-users] computing matrix exponentials Message-ID: Hi, Is there a way to compute matrix exponentials in Petsc? Amlan -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Sat Jan 18 01:36:28 2014 From: jed at jedbrown.org (Jed Brown) Date: Sat, 18 Jan 2014 00:36:28 -0700 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: Message-ID: <87k3dxyc5f.fsf@jedbrown.org> amlan barua writes: > Hi, > Is there a way to compute matrix exponentials in Petsc? There isn't a function to do it, but you can implement various algorithms using PETSc. What do you want to use the exponential for? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From abarua at iit.edu Sat Jan 18 01:39:08 2014 From: abarua at iit.edu (amlan barua) Date: Sat, 18 Jan 2014 13:09:08 +0530 Subject: [petsc-users] computing matrix exponentials In-Reply-To: <87k3dxyc5f.fsf@jedbrown.org> References: <87k3dxyc5f.fsf@jedbrown.org> Message-ID: I would like to explore some exponential time differencing schemes. Amlan On Sat, Jan 18, 2014 at 1:06 PM, Jed Brown wrote: > amlan barua writes: > > > Hi, > > Is there a way to compute matrix exponentials in Petsc? > > There isn't a function to do it, but you can implement various > algorithms using PETSc. What do you want to use the exponential for? > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jroman at dsic.upv.es Sat Jan 18 02:13:58 2014 From: jroman at dsic.upv.es (Jose E. Roman) Date: Sat, 18 Jan 2014 09:13:58 +0100 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: <87k3dxyc5f.fsf@jedbrown.org> Message-ID: <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> The latest SLEPc version can do exp(tA)*v with a Krylov method (similar to Expokit), see the MFN class. This is quite experimental. Send feedback to slepc-maint. Jose El 18/01/2014, a las 08:39, amlan barua escribi?: > I would like to explore some exponential time differencing schemes. > Amlan > > > On Sat, Jan 18, 2014 at 1:06 PM, Jed Brown wrote: > amlan barua writes: > > > Hi, > > Is there a way to compute matrix exponentials in Petsc? > > There isn't a function to do it, but you can implement various > algorithms using PETSc. What do you want to use the exponential for? > From jed at jedbrown.org Sat Jan 18 01:48:40 2014 From: jed at jedbrown.org (Jed Brown) Date: Sat, 18 Jan 2014 00:48:40 -0700 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: <87k3dxyc5f.fsf@jedbrown.org> Message-ID: <87ha91ybl3.fsf@jedbrown.org> amlan barua writes: > I would like to explore some exponential time differencing schemes. Okay, you that would be an interesting addition to TS. Keep in mind that a step of a linearized s-stage Gauss method is an (s,s) order Pad? approximation of the matrix exponential. It is only known how to use preconditioning to evaluate matrix exponentials for a small class of problems. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From abarua at iit.edu Sat Jan 18 03:00:26 2014 From: abarua at iit.edu (amlan barua) Date: Sat, 18 Jan 2014 14:30:26 +0530 Subject: [petsc-users] computing matrix exponentials In-Reply-To: <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> Message-ID: Jose, Thanks for pointing out slepc. Looks like I can get started. Can I bind slepc to petsc or currently it works independently? Amlan On Sat, Jan 18, 2014 at 1:43 PM, Jose E. Roman wrote: > The latest SLEPc version can do exp(tA)*v with a Krylov method (similar to > Expokit), see the MFN class. This is quite experimental. Send feedback to > slepc-maint. > > Jose > > > > El 18/01/2014, a las 08:39, amlan barua escribi?: > > > I would like to explore some exponential time differencing schemes. > > Amlan > > > > > > On Sat, Jan 18, 2014 at 1:06 PM, Jed Brown wrote: > > amlan barua writes: > > > > > Hi, > > > Is there a way to compute matrix exponentials in Petsc? > > > > There isn't a function to do it, but you can implement various > > algorithms using PETSc. What do you want to use the exponential for? > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jroman at dsic.upv.es Sat Jan 18 03:08:52 2014 From: jroman at dsic.upv.es (Jose E. Roman) Date: Sat, 18 Jan 2014 10:08:52 +0100 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> Message-ID: SLEPc sits on top of PETSc, it cannot be used independently. Jose El 18/01/2014, a las 10:00, amlan barua escribi?: > Jose, > Thanks for pointing out slepc. Looks like I can get started. Can I bind slepc to petsc or currently it works independently? > Amlan > > > On Sat, Jan 18, 2014 at 1:43 PM, Jose E. Roman wrote: > The latest SLEPc version can do exp(tA)*v with a Krylov method (similar to Expokit), see the MFN class. This is quite experimental. Send feedback to slepc-maint. > > Jose > > > > El 18/01/2014, a las 08:39, amlan barua escribi?: > > > I would like to explore some exponential time differencing schemes. > > Amlan > > > > > > On Sat, Jan 18, 2014 at 1:06 PM, Jed Brown wrote: > > amlan barua writes: > > > > > Hi, > > > Is there a way to compute matrix exponentials in Petsc? > > > > There isn't a function to do it, but you can implement various > > algorithms using PETSc. What do you want to use the exponential for? > > > > From jroman at dsic.upv.es Sat Jan 18 12:42:05 2014 From: jroman at dsic.upv.es (Jose E. Roman) Date: Sat, 18 Jan 2014 19:42:05 +0100 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> Message-ID: <9C497662-841D-4C4C-8449-4D8CC942CE19@dsic.upv.es> El 18/01/2014, a las 18:11, amlan barua escribi?: > Hi Jose, > I could run the slepc matrix exponential but I would like to clarify one thing with you. Suppose I need to compute exp(At)*v where the vector v keeps on changing but exp(At) is unchanged and therefore should be computed only once at the beginning of the problem. Will slepc do this or during each iteration it will compute exp(At) fresh? > Amlan > Please do Reply-all so that the answer goes to the list. The current method builds a Krylov subspace with v as starting vector, so a new v implies rebuilding the subspace. Jose From jroman at dsic.upv.es Sat Jan 18 12:42:11 2014 From: jroman at dsic.upv.es (Jose E. Roman) Date: Sat, 18 Jan 2014 19:42:11 +0100 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> Message-ID: <5A6CF977-F42E-413B-ADB2-BAAF7EC3D99B@dsic.upv.es> El 18/01/2014, a las 18:43, amlan barua escribi?: > Also I tried to get the first column of exp(A) by multiplying it with e_1 = (1,0,0,\cdots). The code crashes. I have attached the code. > Amlan > Please do Reply-all so that the answer goes to the list. There is a problem when ncv equals the matrix size (will add a fix when I have time). Instead of n=10, try a larger matrix. Or alternatively run with -mfn_ncv 9 Use VecView(y,NULL) to see the result. Jose From quecat001 at gmail.com Sat Jan 18 13:46:45 2014 From: quecat001 at gmail.com (Que Cat) Date: Sat, 18 Jan 2014 13:46:45 -0600 Subject: [petsc-users] KSP linear solver Message-ID: Dear Petsc-Users, I debug my code. I solve the small linear system using KSP. The matrix is: row 0: (0, -123354) (1, 6.92922e-310) (2, 123354) (3, 1.38582e-309) row 1: (0, 1.3858e-309) (1, 91156.6) (2, 6.92901e-310) (3, 91156.6) row 2: (0, 8768.96) (1, 2.47033e-323) (2, -171955) (3, 1.02212e-316) (4, 163186) (5, 0) row 3: (0, 0) (1, -59201.7) (2, 0) (3, 156037) (4, 0) (5, 93996.1) row 4: (2, 13422.8) (3, 0) (4, -13422.8) (5, 0) row 5: (2, 0) (3, -58000.3) (4, 0) (5, 59201.7) the RHS vector: -9115.66 -17760.5 -425.926 -35400.9 9541.58 -17520.2 the solution I got was: -2.00943e+52 -1.17929e+18 -2.00943e+52 7.121e+16 -2.00943e+52 -7.0943e+16 I checked with matlab and I got the totally different solution. I guess there is something wrong with the linear solver I set up as follow: KSPSetOperators(ksp, mat_A, mat_A, SAME_NONZERO_PATTERN); // set the linear solve options KSPSetType(ksp, KSPGMRES); KSPGMRESSetRestart(ksp, 100); // set preconditioning options KSPGetPC(ksp, &pc); PCSetType(pc, PCBJACOBI); KSPSetFromOptions(ksp); // Solve the linear system KSPSolve(ksp,vec_rhs,vec_sol); Could anyone give me a suggestion where should be the source of error? Thank you! Que -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Sat Jan 18 13:54:56 2014 From: knepley at gmail.com (Matthew Knepley) Date: Sat, 18 Jan 2014 13:54:56 -0600 Subject: [petsc-users] KSP linear solver In-Reply-To: References: Message-ID: On Sat, Jan 18, 2014 at 1:46 PM, Que Cat wrote: Dear Petsc-Users, > > > I debug my code. I solve the small linear system using KSP. > The matrix is: > > row 0: (0, -123354) (1, 6.92922e-310) (2, 123354) (3, 1.38582e-309) > row 1: (0, 1.3858e-309) (1, 91156.6) (2, 6.92901e-310) (3, 91156.6) > row 2: (0, 8768.96) (1, 2.47033e-323) (2, -171955) (3, 1.02212e-316) > (4, 163186) (5, 0) > row 3: (0, 0) (1, -59201.7) (2, 0) (3, 156037) (4, 0) (5, 93996.1) > row 4: (2, 13422.8) (3, 0) (4, -13422.8) (5, 0) > row 5: (2, 0) (3, -58000.3) (4, 0) (5, 59201.7) > > 1) Get rid of the entries that are 1e-300 or below > the RHS vector: > > -9115.66 > -17760.5 > -425.926 > -35400.9 > 9541.58 > -17520.2 > > the solution I got was: > > -2.00943e+52 > -1.17929e+18 > -2.00943e+52 > 7.121e+16 > -2.00943e+52 > -7.0943e+16 > > I checked with matlab and I got the totally different solution. I guess > there is something wrong with the linear solver I set up as follow: > > KSPSetOperators(ksp, mat_A, mat_A, SAME_NONZERO_PATTERN); > > // set the linear solve options > KSPSetType(ksp, KSPGMRES); > KSPGMRESSetRestart(ksp, 100); > // set preconditioning options > KSPGetPC(ksp, &pc); > PCSetType(pc, PCBJACOBI); > KSPSetFromOptions(ksp); > // Solve the linear system > KSPSolve(ksp,vec_rhs,vec_sol); > > Could anyone give me a suggestion where should be the source of error? > Thank you! > 2) Always start with -pc_type lu -ksp_type preonly 3) It appears that your matrix is close to singular (LU will check) Matt > Que > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Sat Jan 18 14:52:47 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Sat, 18 Jan 2014 14:52:47 -0600 Subject: [petsc-users] non linear solver options Message-ID: Hello, I am solving a set of equations with SNES F1 (x1,x2,x3) = 0 F2 (x1,x2,x3) = 0 F3 (x1,x2,x3) = 0 The system of equations is shown on page 1 of pdf here http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf F1 = equation 1 F2 = equation 2 F3 = equation 5 x1 = n, X2=p and X3 = psi, X1 and X2 have an exponential dependance on X1 after i scale the variables, X3 typically varies between say +/- 100 where as X1 and X2 vary between 0 to 2. norm(X) then may usually dominated by solution values of X3. Can you suggest me the snes options that i need to use to achieve the following: 1. X1 > 0 and X2 > 0 (as per previous emails, i can use SNESSetVariableBounds) 2. I want the updates to solution to have an adaptive stepping based on norm of (F) or norm(X). If norm(F) is decreasing as the iteration progresss, larger stepping others wise reduce the step size.. Similarly for Norm of X. Can i get the work done with existing petsc routines/ options ? Do i need to impliment the update method via SNESPOSTCheck ? Thanks Reddy From bsmith at mcs.anl.gov Sat Jan 18 15:20:09 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sat, 18 Jan 2014 15:20:09 -0600 Subject: [petsc-users] non linear solver options In-Reply-To: References: Message-ID: <26E09B42-0025-47FF-8B04-035D5BC8EA52@mcs.anl.gov> Does Newton?s method with SNESSetVariableBounds() fail to converge? Can you send the output of running with -ksp_monitor_true_residual -snes_monitor -snes_linesearch_monitor? I?m guessing you are trying to impose the additional conditions because Newton?s method "gets stuck?? Or why else do you want those additional constraints? Barry On Jan 18, 2014, at 2:52 PM, Dharmendar Reddy wrote: > Hello, > I am solving a set of equations with SNES > F1 (x1,x2,x3) = 0 > F2 (x1,x2,x3) = 0 > F3 (x1,x2,x3) = 0 > > The system of equations is shown on page 1 of pdf here > http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf > > F1 = equation 1 > F2 = equation 2 > F3 = equation 5 > > x1 = n, X2=p and X3 = psi, > X1 and X2 have an exponential dependance on X1 > after i scale the variables, X3 typically varies between say +/- 100 > where as X1 and X2 vary between 0 to 2. norm(X) then may usually > dominated by solution values of X3. > > Can you suggest me the snes options that i need to use to achieve the following: > > 1. X1 > 0 and X2 > 0 (as per previous emails, i can use SNESSetVariableBounds) > 2. I want the updates to solution to have an adaptive stepping based > on norm of (F) or norm(X). If norm(F) is decreasing as the iteration > progresss, larger stepping others wise reduce the step size.. > Similarly for Norm of X. > > Can i get the work done with existing petsc routines/ options ? > > Do i need to impliment the update method via SNESPOSTCheck ? > > > Thanks > Reddy From knepley at gmail.com Sat Jan 18 15:52:18 2014 From: knepley at gmail.com (Matthew Knepley) Date: Sat, 18 Jan 2014 15:52:18 -0600 Subject: [petsc-users] non linear solver options In-Reply-To: References: Message-ID: On Sat, Jan 18, 2014 at 2:52 PM, Dharmendar Reddy wrote: > Hello, > I am solving a set of equations with SNES > F1 (x1,x2,x3) = 0 > F2 (x1,x2,x3) = 0 > F3 (x1,x2,x3) = 0 > > The system of equations is shown on page 1 of pdf here > http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf > > F1 = equation 1 > F2 = equation 2 > F3 = equation 5 > > x1 = n, X2=p and X3 = psi, > X1 and X2 have an exponential dependance on X1 > This is important, and is why Gummel's method was invented. These guys discuss it (http://www.iue.tuwien.ac.at/phd/pourfath/node89.html), and point out that Newton can be hard to converge. I suspect that preconditioning Newton with something that looks like Gummel is the way to go. If you get this coded up, we can help you experiment with nonlinear preconditioning. Gummel is really a particular kind of nonlinear FieldSplit. Thanks, Matt > after i scale the variables, X3 typically varies between say +/- 100 > where as X1 and X2 vary between 0 to 2. norm(X) then may usually > dominated by solution values of X3. > > Can you suggest me the snes options that i need to use to achieve the > following: > > 1. X1 > 0 and X2 > 0 (as per previous emails, i can use > SNESSetVariableBounds) > 2. I want the updates to solution to have an adaptive stepping based > on norm of (F) or norm(X). If norm(F) is decreasing as the iteration > progresss, larger stepping others wise reduce the step size.. > Similarly for Norm of X. > > Can i get the work done with existing petsc routines/ options ? > > Do i need to impliment the update method via SNESPOSTCheck ? > > > Thanks > Reddy > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From rupp at mcs.anl.gov Sat Jan 18 15:54:49 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Sat, 18 Jan 2014 22:54:49 +0100 Subject: [petsc-users] non linear solver options In-Reply-To: References: Message-ID: <52DAF829.4030009@mcs.anl.gov> Hi, > I am solving a set of equations with SNES > F1 (x1,x2,x3) = 0 > F2 (x1,x2,x3) = 0 > F3 (x1,x2,x3) = 0 > > The system of equations is shown on page 1 of pdf here > http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf > > F1 = equation 1 > F2 = equation 2 > F3 = equation 5 > > x1 = n, X2=p and X3 = psi, > X1 and X2 have an exponential dependance on X1 > after i scale the variables, X3 typically varies between say +/- 100 > where as X1 and X2 vary between 0 to 2. norm(X) then may usually > dominated by solution values of X3. If you are solving the drift-diffusion system for semiconductors, which discretization do you use? How did you stabilize the strong advection? > Can you suggest me the snes options that i need to use to achieve the following: > > 1. X1 > 0 and X2 > 0 (as per previous emails, i can use SNESSetVariableBounds) Have you considered a transformation to quasi-fermi potentials, i.e. n ~ exp(phi_n), p ~ exp(phi_p) or Slotboom variables? This way you could get rid of the constraint entirely. Even if you solve for (n,p,psi), my experience is that positivity is preserved automatically when using a good discretization and step size control. > 2. I want the updates to solution to have an adaptive stepping based > on norm of (F) or norm(X). If norm(F) is decreasing as the iteration > progresss, larger stepping others wise reduce the step size.. > Similarly for Norm of X. A good damping for the drift-diffusion system is tricky. I know a couple of empirical expressions, but would be interested to know whether this can be handled in a more black-box manner as well. Best regards, Karli From dharmareddy84 at gmail.com Sat Jan 18 17:35:41 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Sat, 18 Jan 2014 17:35:41 -0600 Subject: [petsc-users] non linear solver options In-Reply-To: <26E09B42-0025-47FF-8B04-035D5BC8EA52@mcs.anl.gov> References: <26E09B42-0025-47FF-8B04-035D5BC8EA52@mcs.anl.gov> Message-ID: On Sat, Jan 18, 2014 at 3:20 PM, Barry Smith wrote: > > Does Newton?s method with SNESSetVariableBounds() fail to converge? Can you send the output of running with -ksp_monitor_true_residual -snes_monitor -snes_linesearch_monitor? > > I?m guessing you are trying to impose the additional conditions because Newton?s method "gets stuck?? Or why else do you want those additional constraints? There is no issue with the convergence when i set the bounds. To illustrate, i have Solved the problem with noBounds, wide range of bounds and a narrow range of bounds (here it the solver should fail) Please see the attache logs. noBounds: resNoBounds.log wideRange : resLargeRange.log Narrow Range : resNarrowRange.log At this point i solve only the non linear Poisson equation (F3). I am working on implementing other equations. Based on my experience using commercial tools for such problems and literature, i find that these coupled equation may require some kind of adaptive damping to stabilize. So i was trying to get some idea on how i should design the code. I have my own user options preprocessor, so i may need to provide interface for appropriate snes options. I have also attached the screen shot of the solution. Left side is the correct solution obtained using nobounds. With large bounds also looks similar. Right side is the solution with narrow bounds. Thanks Reddy > > Barry > > On Jan 18, 2014, at 2:52 PM, Dharmendar Reddy wrote: > >> Hello, >> I am solving a set of equations with SNES >> F1 (x1,x2,x3) = 0 >> F2 (x1,x2,x3) = 0 >> F3 (x1,x2,x3) = 0 >> >> The system of equations is shown on page 1 of pdf here >> http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf >> >> F1 = equation 1 >> F2 = equation 2 >> F3 = equation 5 >> >> x1 = n, X2=p and X3 = psi, >> X1 and X2 have an exponential dependance on X1 >> after i scale the variables, X3 typically varies between say +/- 100 >> where as X1 and X2 vary between 0 to 2. norm(X) then may usually >> dominated by solution values of X3. >> >> Can you suggest me the snes options that i need to use to achieve the following: >> >> 1. X1 > 0 and X2 > 0 (as per previous emails, i can use SNESSetVariableBounds) >> 2. I want the updates to solution to have an adaptive stepping based >> on norm of (F) or norm(X). If norm(F) is decreasing as the iteration >> progresss, larger stepping others wise reduce the step size.. >> Similarly for Norm of X. >> >> Can i get the work done with existing petsc routines/ options ? >> >> Do i need to impliment the update method via SNESPOSTCheck ? >> >> >> Thanks >> Reddy > -- ----------------------------------------------------- -------------- next part -------------- A non-text attachment was scrubbed... Name: resLargeRange.log Type: application/octet-stream Size: 15719 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: resNarrowRange.log Type: application/octet-stream Size: 2508 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: resNoBounds.log Type: application/octet-stream Size: 15719 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Solution.png Type: image/png Size: 69787 bytes Desc: not available URL: From dharmareddy84 at gmail.com Sat Jan 18 17:59:33 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Sat, 18 Jan 2014 17:59:33 -0600 Subject: [petsc-users] non linear solver options In-Reply-To: <52DAF829.4030009@mcs.anl.gov> References: <52DAF829.4030009@mcs.anl.gov> Message-ID: On Sat, Jan 18, 2014 at 3:54 PM, Karl Rupp wrote: > Hi, > > > >> I am solving a set of equations with SNES >> >> F1 (x1,x2,x3) = 0 >> F2 (x1,x2,x3) = 0 >> F3 (x1,x2,x3) = 0 >> >> The system of equations is shown on page 1 of pdf here >> http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf >> >> F1 = equation 1 >> F2 = equation 2 >> F3 = equation 5 >> >> x1 = n, X2=p and X3 = psi, >> X1 and X2 have an exponential dependance on X1 >> after i scale the variables, X3 typically varies between say +/- 100 >> where as X1 and X2 vary between 0 to 2. norm(X) then may usually >> dominated by solution values of X3. > > > If you are solving the drift-diffusion system for semiconductors, which > discretization do you use? How did you stabilize the strong advection? > > My plan is to use the discretization method described here. (http://www.iue.tuwien.ac.at/phd/triebl/node30.html ). The method typically used for for stabilizing the advection term is called Scharfetter-Gummel method described the above link. When i intially started the code design, i wanted to implement the approach mentioned in this paper (dx.doi.org/10.2172/1020517) . I am still learning about this things so..i am not sure which is the right way to go. For stabilizing, i implemented the bank n rose algorithm via SNESPostCheck, i am yet to test the efficacy of this method over the defualt snes methods. (http://www.iue.tuwien.ac.at/phd/ceric/node17.html) > >> Can you suggest me the snes options that i need to use to achieve the >> following: >> >> 1. X1 > 0 and X2 > 0 (as per previous emails, i can use >> SNESSetVariableBounds) > > > Have you considered a transformation to quasi-fermi potentials, i.e. > n ~ exp(phi_n), p ~ exp(phi_p) > or Slotboom variables? This way you could get rid of the constraint > entirely. Even if you solve for (n,p,psi), my experience is that positivity > is preserved automatically when using a good discretization and step size > control. > > > >> 2. I want the updates to solution to have an adaptive stepping based >> on norm of (F) or norm(X). If norm(F) is decreasing as the iteration >> progresss, larger stepping others wise reduce the step size.. >> Similarly for Norm of X. > > > A good damping for the drift-diffusion system is tricky. I know a couple of > empirical expressions, but would be interested to know whether this can be > handled in a more black-box manner as well. > > Best regards, > Karli > From dharmareddy84 at gmail.com Sat Jan 18 18:18:32 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Sat, 18 Jan 2014 18:18:32 -0600 Subject: [petsc-users] non linear solver options In-Reply-To: References: Message-ID: On Sat, Jan 18, 2014 at 3:52 PM, Matthew Knepley wrote: > On Sat, Jan 18, 2014 at 2:52 PM, Dharmendar Reddy > wrote: >> >> Hello, >> I am solving a set of equations with SNES >> F1 (x1,x2,x3) = 0 >> F2 (x1,x2,x3) = 0 >> F3 (x1,x2,x3) = 0 >> >> The system of equations is shown on page 1 of pdf here >> http://dunham.ee.washington.edu/ee531/notes/SemiRev.pdf >> >> F1 = equation 1 >> F2 = equation 2 >> F3 = equation 5 >> >> x1 = n, X2=p and X3 = psi, >> X1 and X2 have an exponential dependance on X1 > > > This is important, and is why Gummel's method was invented. These guys > discuss > it (http://www.iue.tuwien.ac.at/phd/pourfath/node89.html), and point out > that Newton > can be hard to converge. I suspect that preconditioning Newton with > something that > looks like Gummel is the way to go. > Hello, The algorithm described in the above link is a more accurate version (called Non Equilibrium Greens Function method for quantum transport) of the drift diffusion transport problem. I have part of it coded, and i could not get the convergence work well. The problem is basically, -del (grad(psi)) = n(psi) + C (1) V = diagMatrix(psi) and n(psi) = diagonal elements of integral ( inv (E - H - V ) dE ) . H is called Hamiltonian matrix now n(psi) has no closed form expression, In which case it is numerically very expensive to calculate the Jacobin for equation (1). The Gummel method is then a method for approximate expression for n(psi) which is similar to the classical expressions used in drift diffusion model. I am working on a problem where on a large part of the mesh, i will solve drift diffusion model and on a small part of the mesh, i will used the more accurate greens function method. I appreciate any help in methods for stabilizing the above mentioned algorithm. Thanks Reddy > If you get this coded up, we can help you experiment with nonlinear > preconditioning. > Gummel is really a particular kind of nonlinear FieldSplit. > > Thanks, > > Matt > >> >> after i scale the variables, X3 typically varies between say +/- 100 >> where as X1 and X2 vary between 0 to 2. norm(X) then may usually >> dominated by solution values of X3. >> >> Can you suggest me the snes options that i need to use to achieve the >> following: >> >> 1. X1 > 0 and X2 > 0 (as per previous emails, i can use >> SNESSetVariableBounds) >> 2. I want the updates to solution to have an adaptive stepping based >> on norm of (F) or norm(X). If norm(F) is decreasing as the iteration >> progresss, larger stepping others wise reduce the step size.. >> Similarly for Norm of X. >> >> Can i get the work done with existing petsc routines/ options ? >> >> Do i need to impliment the update method via SNESPOSTCheck ? >> >> >> Thanks >> Reddy > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From abarua at iit.edu Sun Jan 19 00:32:07 2014 From: abarua at iit.edu (amlan barua) Date: Sun, 19 Jan 2014 12:02:07 +0530 Subject: [petsc-users] computing matrix exponentials In-Reply-To: <5A6CF977-F42E-413B-ADB2-BAAF7EC3D99B@dsic.upv.es> References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> <5A6CF977-F42E-413B-ADB2-BAAF7EC3D99B@dsic.upv.es> Message-ID: Hi Jose, Thanks for the clarification. So if I want to compute the exponential matrix just once then I should extract the columns one by one and store them in a PetSc matrix. Amlan On Sun, Jan 19, 2014 at 12:12 AM, Jose E. Roman wrote: > > El 18/01/2014, a las 18:43, amlan barua escribi?: > > > Also I tried to get the first column of exp(A) by multiplying it with > e_1 = (1,0,0,\cdots). The code crashes. I have attached the code. > > Amlan > > > > Please do Reply-all so that the answer goes to the list. > > There is a problem when ncv equals the matrix size (will add a fix when I > have time). Instead of n=10, try a larger matrix. Or alternatively run with > -mfn_ncv 9 > Use VecView(y,NULL) to see the result. > > Jose > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Sun Jan 19 00:38:58 2014 From: jed at jedbrown.org (Jed Brown) Date: Sat, 18 Jan 2014 23:38:58 -0700 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> <5A6CF977-F42E-413B-ADB2-BAAF7EC3D99B@dsic.upv.es> Message-ID: <87a9eswk59.fsf@jedbrown.org> amlan barua writes: > Hi Jose, > Thanks for the clarification. So if I want to compute the exponential > matrix just once then I should extract the columns one by one and store > them in a PetSc matrix. Normally when people talk about efficient/scalable methods for matrix exponential, they mean evaluating y = exp(A*t) * x rather than computing the full matrix exp(A*t). Which do you want? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From abarua at iit.edu Sun Jan 19 02:22:33 2014 From: abarua at iit.edu (amlan barua) Date: Sun, 19 Jan 2014 13:52:33 +0530 Subject: [petsc-users] computing matrix exponentials In-Reply-To: <87a9eswk59.fsf@jedbrown.org> References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> <5A6CF977-F42E-413B-ADB2-BAAF7EC3D99B@dsic.upv.es> <87a9eswk59.fsf@jedbrown.org> Message-ID: Jed, Which one will give better performance - 1) a precomputed exp(A*t) and dense matrix-vector multiplication exp(A*t) v or 2) computing exp(A*t) v using Krylov subspace methods. My exp(A*t) will not change between time steps. Amlan On Sun, Jan 19, 2014 at 12:08 PM, Jed Brown wrote: > amlan barua writes: > > > Hi Jose, > > Thanks for the clarification. So if I want to compute the exponential > > matrix just once then I should extract the columns one by one and store > > them in a PetSc matrix. > > Normally when people talk about efficient/scalable methods for matrix > exponential, they mean evaluating > > y = exp(A*t) * x > > rather than computing the full matrix exp(A*t). Which do you want? > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jroman at dsic.upv.es Sun Jan 19 02:59:27 2014 From: jroman at dsic.upv.es (Jose E. Roman) Date: Sun, 19 Jan 2014 09:59:27 +0100 Subject: [petsc-users] computing matrix exponentials In-Reply-To: References: <87k3dxyc5f.fsf@jedbrown.org> <1004CF9C-0A36-4F28-9B11-495E8374ADED@dsic.upv.es> <5A6CF977-F42E-413B-ADB2-BAAF7EC3D99B@dsic.upv.es> <87a9eswk59.fsf@jedbrown.org> Message-ID: El 19/01/2014, a las 09:22, amlan barua escribi?: > Jed, > Which one will give better performance - 1) a precomputed exp(A*t) and dense matrix-vector multiplication exp(A*t) v or 2) computing exp(A*t) v using Krylov subspace methods. My exp(A*t) will not change between time steps. > Amlan > For large sparse A the best option is of course 2, provided that the method converges well. Jose From yan.chang.suse at gmail.com Sun Jan 19 03:39:31 2014 From: yan.chang.suse at gmail.com (yan chang) Date: Sun, 19 Jan 2014 17:39:31 +0800 Subject: [petsc-users] general problem with application based on PETSc Message-ID: I have used Eigen (a C++ template library ) to set up a spin dynamics simulation program, and now I would like to speed up the simulation in parallel using PETSc, mostly use sparse Mat and Vec operations. After some rewrite work (just replace the matrix operations by PETSc), I can firstly set up a spin system and calculate its relaxation matrix R. PetscErrorCode ierr; PetscInitialize(&argc, &argv, (char*) 0, help); SpinSystem sys; sys.set_magnet(14.1); sys.set_isotopes("1H 13C"); sys.set_basis("sphten_liouv"); sys.set_zeeman_eigs("(7 15 -22) (11 18 -29)"); sys.set_zeeman_euler("(1.0472 0.7854 0.6283) (0.5236 0.4488 0.3927)"); sys.set_coordinates("1 (0 0 0) 2 (0 0 1.02)"); sys.create(); Relaxation relax(sys); Mat R = relax.Rmat(); ierr = MatView(R, PETSC_VIEWER_STDOUT_WORLD); ierr = MatDestroy(&R); CHKERRQ(ierr); ierr = PetscFinalize(); And run it with mpirun -np 1 ./Release/spin-scenarios-petsc it is ok. However if I set the np to be 2 or more, the program would generate the same number of the spin system object and it is time consuming to get the result. I am very confused that in the implementation the Mat and Vec variables are not sequential like Eigen, so could you give me some advise how to organize my program based on PETSc? I am a beginner of both OPENMPI and PETSc. Also, after the simple set up part, there will be some more time consuming work to do, that's why I switch from Eigen to PETSc. Thanks a lot! -------------- next part -------------- An HTML attachment was scrubbed... URL: From rupp at mcs.anl.gov Sun Jan 19 04:16:37 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Sun, 19 Jan 2014 11:16:37 +0100 Subject: [petsc-users] non linear solver options In-Reply-To: References: <52DAF829.4030009@mcs.anl.gov> Message-ID: <52DBA605.1080305@mcs.anl.gov> Hi, > > My plan is to use the discretization method described here. > (http://www.iue.tuwien.ac.at/phd/triebl/node30.html ). It always strikes me how small the world is: I met Oliver Triebl just yesterday ;-) > The method typically used for for stabilizing the advection term is > called Scharfetter-Gummel method described the above link. Ok, good, so you know how to deal with it. :-) > When i intially started the code design, i wanted to implement the > approach mentioned in this paper (dx.doi.org/10.2172/1020517) . I am > still learning about this things so..i am not sure which is the right > way to go. You might want to have a look here: http://www.iue.tuwien.ac.at/phd/fischer/node89.html Unfortunately it is in German (use your favorite translator), but it is a good summary on the various attempts on stabilizing the DD system with Newton. From my own experience I can say that the damping described in 9.2.3 works surprisingly well and is also the one we implemented in ViennaSHE [1], where we use the solution of a DD solver for a full solution of the Boltzmann transport equation. I can dig out the parameters if required. Using this criterion with SNES should be straight-forward, but I haven't tried yet. Best regards, Karli From rupp at mcs.anl.gov Sun Jan 19 04:34:32 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Sun, 19 Jan 2014 11:34:32 +0100 Subject: [petsc-users] general problem with application based on PETSc In-Reply-To: References: Message-ID: <52DBAA38.4070404@mcs.anl.gov> Hi, On 01/19/2014 10:39 AM, yan chang wrote: > I have used Eigen (a C++ template library ) to set up a spin dynamics > simulation program, and now I would like to speed up the simulation in > parallel using PETSc, mostly use sparse Mat and Vec operations. After > some rewrite work (just replace the matrix operations by PETSc), I can > firstly set up a spin system and calculate its relaxation matrix R. > > PetscErrorCode ierr; > PetscInitialize(&argc, &argv, (char*) 0, help); > SpinSystem sys; > sys.set_magnet(14.1); > sys.set_isotopes("1H 13C"); > sys.set_basis("sphten_liouv"); > sys.set_zeeman_eigs("(7 15 -22) (11 18 -29)"); > sys.set_zeeman_euler("(1.0472 0.7854 0.6283) (0.5236 0.4488 0.3927)"); > sys.set_coordinates("1 (0 0 0) 2 (0 0 1.02)"); > sys.create(); > Relaxation relax(sys); > Mat R = relax.Rmat(); > ierr = MatView(R, PETSC_VIEWER_STDOUT_WORLD); > ierr = MatDestroy(&R); > CHKERRQ(ierr); > ierr = PetscFinalize(); > > And run it with mpirun -np 1 ./Release/spin-scenarios-petsc it is ok. Please don't forget to check the error code through CHKERRQ after *each* function call. > However if I set the np to be 2 or more, the program would generate the > same number of the spin system object and it is time consuming to get > the result. I am very confused that in the implementation the Mat and > Vec variables are not sequential like Eigen, so could you give me some > advise how to organize my program based on PETSc? a) Did you verify that you are using the correct 'mpirun'? You need to use the one you specified for the PETSc installation. Otherwise, the same executable will be called multiple times in sequential mode. Hint: MatView should report your matrix R as being equally split over the MPI ranks. b) To get reasonable performance and scalability you need to consider the multiple MPI ranks in your SpinSystem and Relaxation objects already. Each MPI rank should then set up its part of the global system. Have a look at e.g. the examples in src/ksp/ksp/examples/tutorials/ or src/snes/examples/tutorials to get an idea how this is done. Keep in mind that the distributed matrix is decomposed by rows, i.e. each MPI rank stores a horizontal strip of the full matrix R, but PETSc will take care of the details if you set values in rows which are not locally owned. > I am a beginner of both OPENMPI and PETSc. Also, after the simple set up > part, there will be some more time consuming work to do, that's why I > switch from Eigen to PETSc. > Thanks a lot! My advice is to familiarize yourself with some of the simpler tutorials on how simpler systems are set up in parallel. Then, incrementally migrate these techniques over to your use case. Best regards, Karli From yan.chang.suse at gmail.com Sun Jan 19 07:07:59 2014 From: yan.chang.suse at gmail.com (yan chang) Date: Sun, 19 Jan 2014 21:07:59 +0800 Subject: [petsc-users] general problem with application based on PETSc In-Reply-To: <52DBAA38.4070404@mcs.anl.gov> References: <52DBAA38.4070404@mcs.anl.gov> Message-ID: Dear Karli, Thanks for your suggestions! Right now I test 'src/ksp/ksp/examples/tutorials/ex11.c' with n=2 I rewrite the sample into a c++ class, and run it as mpirun -np 2 ..... I notice that the vector x is stored in 2 processors. But the matrix A seems not as you told me 'MatView should report your matrix R as being equally split over the MPI ranks.' Norm of error 1.19381e-16 iterations 4 Vector Object: 2 MPI processes type: mpi Process [0] 4.16334e-17 0 + 1.38778e-17 i Process [1] 0 1.11022e-16 Matrix Object: 1 MPI processes type: mpiaij row 0: (0, -7.11111 + 0.0800036 i) (1, -1) (2, -1) row 1: (0, -1) (1, -7.11111 + 0.00111359 i) (3, -1) row 2: (0, -1) (2, -7.11111 + 0.0601271 i) (3, -1) row 3: (1, -1) (2, -1) (3, -7.11111 + 0.0943018 i) I thought Matrix Object should have 2 MPI processes. And again thanks for your help. Best regards, Yan On Sun, Jan 19, 2014 at 6:34 PM, Karl Rupp wrote: > Hi, > > > On 01/19/2014 10:39 AM, yan chang wrote: > >> I have used Eigen (a C++ template library ) to set up a spin dynamics >> simulation program, and now I would like to speed up the simulation in >> parallel using PETSc, mostly use sparse Mat and Vec operations. After >> some rewrite work (just replace the matrix operations by PETSc), I can >> firstly set up a spin system and calculate its relaxation matrix R. >> >> PetscErrorCode ierr; >> PetscInitialize(&argc, &argv, (char*) 0, help); >> SpinSystem sys; >> sys.set_magnet(14.1); >> sys.set_isotopes("1H 13C"); >> sys.set_basis("sphten_liouv"); >> sys.set_zeeman_eigs("(7 15 -22) (11 18 -29)"); >> sys.set_zeeman_euler("(1.0472 0.7854 0.6283) (0.5236 0.4488 0.3927)"); >> sys.set_coordinates("1 (0 0 0) 2 (0 0 1.02)"); >> sys.create(); >> Relaxation relax(sys); >> Mat R = relax.Rmat(); >> ierr = MatView(R, PETSC_VIEWER_STDOUT_WORLD); >> ierr = MatDestroy(&R); >> CHKERRQ(ierr); >> ierr = PetscFinalize(); >> >> And run it with mpirun -np 1 ./Release/spin-scenarios-petsc it is ok. >> > > Please don't forget to check the error code through CHKERRQ after *each* > function call. > > > > However if I set the np to be 2 or more, the program would generate the >> same number of the spin system object and it is time consuming to get >> the result. I am very confused that in the implementation the Mat and >> Vec variables are not sequential like Eigen, so could you give me some >> advise how to organize my program based on PETSc? >> > > a) Did you verify that you are using the correct 'mpirun'? You need to use > the one you specified for the PETSc installation. Otherwise, the same > executable will be called multiple times in sequential mode. Hint: MatView > should report your matrix R as being equally split over the MPI ranks. > > b) To get reasonable performance and scalability you need to consider the > multiple MPI ranks in your SpinSystem and Relaxation objects already. Each > MPI rank should then set up its part of the global system. Have a look at > e.g. the examples in src/ksp/ksp/examples/tutorials/ or > src/snes/examples/tutorials to get an idea how this is done. Keep in mind > that the distributed matrix is decomposed by rows, i.e. each MPI rank > stores a horizontal strip of the full matrix R, but PETSc will take care of > the details if you set values in rows which are not locally owned. > > > > I am a beginner of both OPENMPI and PETSc. Also, after the simple set up >> part, there will be some more time consuming work to do, that's why I >> switch from Eigen to PETSc. >> Thanks a lot! >> > > My advice is to familiarize yourself with some of the simpler tutorials on > how simpler systems are set up in parallel. Then, incrementally migrate > these techniques over to your use case. > > Best regards, > Karli > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From rupp at mcs.anl.gov Sun Jan 19 07:11:12 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Sun, 19 Jan 2014 14:11:12 +0100 Subject: [petsc-users] general problem with application based on PETSc In-Reply-To: References: <52DBAA38.4070404@mcs.anl.gov> Message-ID: <52DBCEF0.4090208@mcs.anl.gov> Hi Yan, > Right now I test 'src/ksp/ksp/examples/tutorials/ex11.c' with n=2 > I rewrite the sample into a c++ class, and run it as mpirun -np 2 ..... > I notice that the vector x is stored in 2 processors. > But the matrix A seems not as you told me 'MatView should report your > matrix R as being equally split over the MPI ranks.' > > Norm of error 1.19381e-16 iterations 4 > Vector Object: 2 MPI processes > type: mpi > Process [0] > 4.16334e-17 > 0 + 1.38778e-17 i > Process [1] > 0 > 1.11022e-16 This looks good. > Matrix Object: 1 MPI processes > type: mpiaij > row 0: (0, -7.11111 + 0.0800036 i) (1, -1) (2, -1) > row 1: (0, -1) (1, -7.11111 + 0.00111359 i) (3, -1) > row 2: (0, -1) (2, -7.11111 + 0.0601271 i) (3, -1) > row 3: (1, -1) (2, -1) (3, -7.11111 + 0.0943018 i) This doesn't. How to do you create the matrix and set its sizes? Best regards, Karli From yan.chang.suse at gmail.com Sun Jan 19 07:33:27 2014 From: yan.chang.suse at gmail.com (yan chang) Date: Sun, 19 Jan 2014 21:33:27 +0800 Subject: [petsc-users] general problem with application based on PETSc In-Reply-To: <52DBCEF0.4090208@mcs.anl.gov> References: <52DBAA38.4070404@mcs.anl.gov> <52DBCEF0.4090208@mcs.anl.gov> Message-ID: Well, to make sure about the results, I again just copy the example and add two lines before the Destroy code, then ,compile. Example: http://www.mcs.anl.gov/petsc/petsc-current/src/ksp/ksp/examples/tutorials/ex11.c.html Run it with mpirun -np 2 ./Release/spin-scenarios-petsc -n 2 This is the results: 1+1i 1+1i Norm of error 1.19381e-16 iterations 4 Vector Object: 2 MPI processes type: mpi Process [0] 4.16334e-17 0 + 1.38778e-17 i Process [1] 0 1.11022e-16 Matrix Object: 1 MPI processes type: mpiaij row 0: (0, -7.11111 + 0.0800036 i) (1, -1) (2, -1) row 1: (0, -1) (1, -7.11111 + 0.00111359 i) (3, -1) row 2: (0, -1) (2, -7.11111 + 0.0601271 i) (3, -1) row 3: (1, -1) (2, -1) (3, -7.11111 + 0.0943018 i) I am not sure about it, but the results is the same as I tried before with c++ class. By the way, I install PETSc using --with-mpi-dir=/usr/local --with-scalar-type=complex --with-clanguage=cxx --with-fortran-kernels=1 --with-blas-lapack-dir=/opt/intel/composer_xe_2013_sp1.0.080/mkl --with-debugging=no Isn?t it strange? Or can you run it again to make sure about it? On Sun, Jan 19, 2014 at 9:11 PM, Karl Rupp wrote: > Hi Yan, > > > > Right now I test 'src/ksp/ksp/examples/tutorials/ex11.c' with n=2 > >> I rewrite the sample into a c++ class, and run it as mpirun -np 2 ..... >> I notice that the vector x is stored in 2 processors. >> But the matrix A seems not as you told me 'MatView should report your >> matrix R as being equally split over the MPI ranks.' >> >> Norm of error 1.19381e-16 iterations 4 >> Vector Object: 2 MPI processes >> type: mpi >> Process [0] >> 4.16334e-17 >> 0 + 1.38778e-17 i >> Process [1] >> 0 >> 1.11022e-16 >> > > This looks good. > > > Matrix Object: 1 MPI processes >> type: mpiaij >> row 0: (0, -7.11111 + 0.0800036 i) (1, -1) (2, -1) >> row 1: (0, -1) (1, -7.11111 + 0.00111359 i) (3, -1) >> row 2: (0, -1) (2, -7.11111 + 0.0601271 i) (3, -1) >> row 3: (1, -1) (2, -1) (3, -7.11111 + 0.0943018 i) >> > > This doesn't. How to do you create the matrix and set its sizes? > > Best regards, > Karli > -------------- next part -------------- An HTML attachment was scrubbed... URL: From rupp at mcs.anl.gov Sun Jan 19 08:10:02 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Sun, 19 Jan 2014 15:10:02 +0100 Subject: [petsc-users] general problem with application based on PETSc In-Reply-To: References: <52DBAA38.4070404@mcs.anl.gov> <52DBCEF0.4090208@mcs.anl.gov> Message-ID: <52DBDCBA.8090002@mcs.anl.gov> Hi, ah, sorry, the matrix view was okay, I'm still confused from a recent debugging session. If you want to verify that the distribution is okay, verify the return values of MatGetOwnerShipRange() to get the rows 'owned' by the respective process. In your example you should get {0,1} for the first MPI rank and {2,3} for the second. > Example: > http://www.mcs.anl.gov/petsc/petsc-current/src/ksp/ksp/examples/tutorials/ex11.c.html > Run it with > mpirun -np 2 ./Release/spin-scenarios-petsc -n 2 > This is the results: > 1+1i > 1+1i > Norm of error 1.19381e-16 iterations 4 > Vector Object: 2 MPI processes > type: mpi > Process [0] > 4.16334e-17 > 0 + 1.38778e-17 i > Process [1] > 0 > 1.11022e-16 > Matrix Object: 1 MPI processes > type: mpiaij > row 0: (0, -7.11111 + 0.0800036 i) (1, -1) (2, -1) > row 1: (0, -1) (1, -7.11111 + 0.00111359 i) (3, -1) > row 2: (0, -1) (2, -7.11111 + 0.0601271 i) (3, -1) > row 3: (1, -1) (2, -1) (3, -7.11111 + 0.0943018 i) > > I am not sure about it, but the results is the same as I tried before > with c++ class. The output looks okay to me - sorry for the confusion. > By the way, I install PETSc using > --with-mpi-dir=/usr/local --with-scalar-type=complex > --with-clanguage=cxx --with-fortran-kernels=1 > --with-blas-lapack-dir=/opt/intel/composer_xe_2013_sp1.0.080/mkl > --with-debugging=no Please perform *all* development using --with-debugging=yes and only use optimized builds once everything is working. Chances are high that this will save you a lot of headache :-) Best regards, Karli From yan.chang.suse at gmail.com Sun Jan 19 18:59:12 2014 From: yan.chang.suse at gmail.com (yan chang) Date: Mon, 20 Jan 2014 08:59:12 +0800 Subject: [petsc-users] general problem with application based on PETSc In-Reply-To: <52DBDCBA.8090002@mcs.anl.gov> References: <52DBAA38.4070404@mcs.anl.gov> <52DBCEF0.4090208@mcs.anl.gov> <52DBDCBA.8090002@mcs.anl.gov> Message-ID: ok, thank you very much!! On Sun, Jan 19, 2014 at 10:10 PM, Karl Rupp wrote: > Hi, > > ah, sorry, the matrix view was okay, I'm still confused from a recent > debugging session. If you want to verify that the distribution is okay, > verify the return values of MatGetOwnerShipRange() to get the rows 'owned' > by the respective process. In your example you should get {0,1} for the > first MPI rank and {2,3} for the second. > > > > Example: >> http://www.mcs.anl.gov/petsc/petsc-current/src/ksp/ksp/ >> examples/tutorials/ex11.c.html >> Run it with >> mpirun -np 2 ./Release/spin-scenarios-petsc -n 2 >> This is the results: >> 1+1i >> 1+1i >> Norm of error 1.19381e-16 iterations 4 >> Vector Object: 2 MPI processes >> type: mpi >> Process [0] >> 4.16334e-17 >> 0 + 1.38778e-17 i >> Process [1] >> 0 >> 1.11022e-16 >> Matrix Object: 1 MPI processes >> type: mpiaij >> row 0: (0, -7.11111 + 0.0800036 i) (1, -1) (2, -1) >> row 1: (0, -1) (1, -7.11111 + 0.00111359 i) (3, -1) >> row 2: (0, -1) (2, -7.11111 + 0.0601271 i) (3, -1) >> row 3: (1, -1) (2, -1) (3, -7.11111 + 0.0943018 i) >> >> I am not sure about it, but the results is the same as I tried before >> with c++ class. >> > > The output looks okay to me - sorry for the confusion. > > > By the way, I install PETSc using >> --with-mpi-dir=/usr/local --with-scalar-type=complex >> --with-clanguage=cxx --with-fortran-kernels=1 >> --with-blas-lapack-dir=/opt/intel/composer_xe_2013_sp1.0.080/mkl >> --with-debugging=no >> > > Please perform *all* development using --with-debugging=yes and only use > optimized builds once everything is working. Chances are high that this > will save you a lot of headache :-) > > Best regards, > Karli > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From ysbda at ysplastic.com Mon Jan 20 04:28:16 2014 From: ysbda at ysplastic.com (Nick Tang) Date: 20 Jan 2014 18:28:16 +0800 Subject: [petsc-users] YS China supplies total plastic solutions , 40T-200T-650T-1300T machine inhouse Message-ID: <20140120102835.428F3EC036@fbecsscrub20.seg.att.com> An HTML attachment was scrubbed... URL: From jed at jedbrown.org Mon Jan 20 07:38:11 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 20 Jan 2014 06:38:11 -0700 Subject: [petsc-users] cudaSetDevice In-Reply-To: References: Message-ID: <87r482n58c.fsf@jedbrown.org> Harshad Sahasrabudhe writes: > Hi Jed, > > Sometime back we talked about an interface which could handle other > libraries calling cudaSetDevice simultaneously with PETSc. For > example, in our case 2 different instances of PETSc calling > cudaSetDevice. > >>Sure, but how will we actually share the device between libraries? What >>if the other library was not PETSc, but something else, and they also >>called cudaSetDevice, but with a different default mapping strategy? > >>We need an interface that handles this case. > > Do we already have any solution for this? If not, can we start looking at this case? Yes, I'm hoping Karl and/or Dominic will weigh in. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From adrimacortes at gmail.com Mon Jan 20 08:38:47 2014 From: adrimacortes at gmail.com (=?ISO-8859-1?Q?Adriano_C=F4rtes?=) Date: Mon, 20 Jan 2014 12:38:47 -0200 Subject: [petsc-users] MINRES and PCFIELDSPLIT Message-ID: Hi all, I'm still trying to make MINRES and PCFIELDSPLIT working together in my code, but I am not understanding how things are going. Ok, first of all, I'm trying to solve a Stokes problem with an inf-sup stable element with all boundary of Dirichlet type, that is, my system is [ A B^t ] M = [ ] [ B 0 ] and its kernel is the column vector [zeros(ndof_vel,1) ; ones(ndof_press,1) ] (using Matlab notation) Lets say some facts that I'm sure of, since I damped the matrices using MatView to a Matlab file and inspected them: a. M is symmetric for sure and singular, with the kernel mentioned above; b. The block A is SPD (all eigenvalues are positive); c. S = - B * A^{-1} * B^t negative semi-definite (with only one zero eigenvalue and all others negative); that is -S is positive semi-definite; Now I will talk about my tests using MINRES and PCFIELDSPLIT to solve this problem: 1. MINRES without preconditioner converges (very slowly) to any specified tolerance; 2. MINRES without preconditioner AND using KSPSetNullspace to set the null space of the matrix as [zeros(ndof_vel,1) ; ones(ndof_press,1) ] converges to any specified tolerance, but the number of iterations are almost the same of the test above; 3. MINRES with PCFIELDSPLIT, using SPLIT = SCHUR, and SCHURFACT = DIAG, and letting Petsc managing the other options with default values (GMRES for the KPS and ILU(0) for PC). In this case I think Petsc is using [ A 0 ] P = [ ] [ 0 -S ] that in my case is symmetric positive semi-definite (by just one zero eigenvalue), but approximating with ksp(A) and ksp(-S). Before someone as I am also setting KSPSetNullspace as above for the MINRES iterations, plus passing the option -fieldsplit_p_ksp_constant_null_space for the Schur block, and what I obtain (with -ksp_rtol 1e-7) is 0 KSP preconditioned resid norm 4.632440509011e-01 true resid norm 2.987970930100e-02 ||r(i)||/||b|| 1.000000000000e+00 1 KSP preconditioned resid norm 1.484245122855e-01 true resid norm 3.127586084436e-03 ||r(i)||/||b|| 1.046725740512e-01 2 KSP preconditioned resid norm 1.474500219584e-01 true resid norm 3.303438991154e-03 ||r(i)||/||b|| 1.105579360855e-01 3 KSP preconditioned resid norm 3.685525320417e-06 true resid norm 2.519862718263e-07 ||r(i)||/||b|| 8.433357543339e-06 4 KSP preconditioned resid norm 3.665488598091e-06 true resid norm 2.739588290212e-07 ||r(i)||/||b|| 9.168724710853e-06 5 KSP preconditioned resid norm 9.845910914885e-07 true resid norm 2.763504619849e-07 ||r(i)||/||b|| 9.248766753419e-06 6 KSP preconditioned resid norm 9.519073659560e-08 true resid norm 1.490709049851e-07 ||r(i)||/||b|| 4.989034648343e-06 7 KSP preconditioned resid norm 9.490881783501e-08 true resid norm 1.489003256545e-07 ||r(i)||/||b|| 4.983325779864e-06 Linear solve did not converge due to DIVERGED_INDEFINITE_MAT iterations 8 So I ask: why this last line? What is computed inside Petsc that forces it to be printed? My guess is that o preconditioned norm used. Am I right? Then I decide to change some options for PCFIELDSPLIT, passing the options #Velocity -fieldsplit_u_ksp_type cg -fieldsplit_u_pc_type bjacobi -fieldsplit_u_ksp_rtol 1e-03 #Pressure -fieldsplit_p_ksp_type cg -fieldsplit_p_pc_type bjacobi -fieldsplit_p_ksp_rtol 1e-03 -fieldsplit_p_ksp_constant_null_space Then I obtained the -ksp_monitor (again with -ksp_rtol 1e-7): 0 KSP preconditioned resid norm 4.632522584339e-01 true resid norm 2.987970930100e-02 ||r(i)||/||b|| 1.000000000000e+00 1 KSP preconditioned resid norm 1.485092747354e-01 true resid norm 3.133707103392e-03 ||r(i)||/||b|| 1.048774294229e-01 2 KSP preconditioned resid norm 1.475544621957e-01 true resid norm 3.307719603712e-03 ||r(i)||/||b|| 1.107011976051e-01 3 KSP preconditioned resid norm 3.647747431146e-04 true resid norm 3.795610417928e-05 ||r(i)||/||b|| 1.270296969657e-03 4 KSP preconditioned resid norm 3.614914908198e-04 true resid norm 4.114945598888e-05 ||r(i)||/||b|| 1.377170559939e-03 5 KSP preconditioned resid norm 1.289144645113e-04 true resid norm 4.067177049739e-05 ||r(i)||/||b|| 1.361183607500e-03 6 KSP preconditioned resid norm 5.143993331403e-05 true resid norm 2.794092581519e-05 ||r(i)||/||b|| 9.351137099001e-04 7 KSP preconditioned resid norm 2.361302329725e-05 true resid norm 2.715477815463e-05 ||r(i)||/||b|| 9.088032912597e-04 8 KSP preconditioned resid norm 2.352126784416e-05 true resid norm 2.732009930616e-05 ||r(i)||/||b|| 9.143361814852e-04 Linear solve did not converge due to DIVERGED_INDEFINITE_MAT iterations 9 And again the same line is printed. Can somebody explain it for me? Thanks. Adriano Cortes From knepley at gmail.com Mon Jan 20 09:01:45 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 20 Jan 2014 09:01:45 -0600 Subject: [petsc-users] MINRES and PCFIELDSPLIT In-Reply-To: References: Message-ID: On Mon, Jan 20, 2014 at 8:38 AM, Adriano C?rtes wrote: > Hi all, > > I'm still trying to make MINRES and PCFIELDSPLIT working together in > my code, but I am not understanding how things are going. > Ok, first of all, I'm trying to solve a Stokes problem with an inf-sup > stable element with all boundary of Dirichlet type, that is, my system > is > > [ A B^t ] > M = [ ] > [ B 0 ] > > and its kernel is the column vector [zeros(ndof_vel,1) ; > ones(ndof_press,1) ] (using Matlab notation) > > Lets say some facts that I'm sure of, since I damped the matrices > using MatView to a Matlab file and inspected them: > > a. M is symmetric for sure and singular, with the kernel mentioned above; > b. The block A is SPD (all eigenvalues are positive); > c. S = - B * A^{-1} * B^t negative semi-definite (with only one zero > eigenvalue and all others negative); that is -S is positive > semi-definite; > > Now I will talk about my tests using MINRES and PCFIELDSPLIT to solve > this problem: > > 1. MINRES without preconditioner converges (very slowly) to any > specified tolerance; > > 2. MINRES without preconditioner AND using KSPSetNullspace to set the > null space of the matrix as [zeros(ndof_vel,1) ; ones(ndof_press,1) ] > converges to any specified tolerance, but the number of iterations are > almost the same of the test above; > > 3. MINRES with PCFIELDSPLIT, using SPLIT = SCHUR, and SCHURFACT = > DIAG, and letting Petsc managing the other options with default values > (GMRES for the KPS and ILU(0) for PC). In this case I think Petsc is > using > > [ A 0 ] > P = [ ] > [ 0 -S ] > > that in my case is symmetric positive semi-definite (by just one zero > eigenvalue), but approximating with ksp(A) and ksp(-S). Before someone > as I am also setting KSPSetNullspace as above for the MINRES > iterations, plus passing the option > -fieldsplit_p_ksp_constant_null_space for the Schur block, and what I > obtain (with -ksp_rtol 1e-7) is > > 0 KSP preconditioned resid norm 4.632440509011e-01 true resid norm > 2.987970930100e-02 ||r(i)||/||b|| 1.000000000000e+00 > 1 KSP preconditioned resid norm 1.484245122855e-01 true resid norm > 3.127586084436e-03 ||r(i)||/||b|| 1.046725740512e-01 > 2 KSP preconditioned resid norm 1.474500219584e-01 true resid norm > 3.303438991154e-03 ||r(i)||/||b|| 1.105579360855e-01 > 3 KSP preconditioned resid norm 3.685525320417e-06 true resid norm > 2.519862718263e-07 ||r(i)||/||b|| 8.433357543339e-06 > 4 KSP preconditioned resid norm 3.665488598091e-06 true resid norm > 2.739588290212e-07 ||r(i)||/||b|| 9.168724710853e-06 > 5 KSP preconditioned resid norm 9.845910914885e-07 true resid norm > 2.763504619849e-07 ||r(i)||/||b|| 9.248766753419e-06 > 6 KSP preconditioned resid norm 9.519073659560e-08 true resid norm > 1.490709049851e-07 ||r(i)||/||b|| 4.989034648343e-06 > 7 KSP preconditioned resid norm 9.490881783501e-08 true resid norm > 1.489003256545e-07 ||r(i)||/||b|| 4.983325779864e-06 > Linear solve did not converge due to DIVERGED_INDEFINITE_MAT iterations 8 > > So I ask: why this last line? What is computed inside Petsc that > forces it to be printed? My guess is that o preconditioned norm used. > Am I right? > The problem here is the definition of S. In order for the theory to work, S needs to be accurate, so you should always start by solving A exactly, -fieldsplit_u_ksp_type preonly -fieldsplit_y_pc_type lu If after you see 3 iterate (I think) convergence, then you can back off this solver, but you likely need to solve A inside S accurately, which you can do using -fieldsplit_p_inner_ksp_type preonly -fieldsplit_p_inner_pc_type lu See http://people.cs.uchicago.edu/~knepley/presentations/SIAMCSE13.pdf. You can then backoff LU and see the change in convergence. Eventually, if the solve is inaccurate enough, you can destroy the definiteness. Matt Then I decide to change some options for PCFIELDSPLIT, passing the options > > #Velocity > -fieldsplit_u_ksp_type cg > -fieldsplit_u_pc_type bjacobi > -fieldsplit_u_ksp_rtol 1e-03 > > #Pressure > -fieldsplit_p_ksp_type cg > -fieldsplit_p_pc_type bjacobi > -fieldsplit_p_ksp_rtol 1e-03 > -fieldsplit_p_ksp_constant_null_space > > Then I obtained the -ksp_monitor (again with -ksp_rtol 1e-7): > > 0 KSP preconditioned resid norm 4.632522584339e-01 true resid norm > 2.987970930100e-02 ||r(i)||/||b|| 1.000000000000e+00 > 1 KSP preconditioned resid norm 1.485092747354e-01 true resid norm > 3.133707103392e-03 ||r(i)||/||b|| 1.048774294229e-01 > 2 KSP preconditioned resid norm 1.475544621957e-01 true resid norm > 3.307719603712e-03 ||r(i)||/||b|| 1.107011976051e-01 > 3 KSP preconditioned resid norm 3.647747431146e-04 true resid norm > 3.795610417928e-05 ||r(i)||/||b|| 1.270296969657e-03 > 4 KSP preconditioned resid norm 3.614914908198e-04 true resid norm > 4.114945598888e-05 ||r(i)||/||b|| 1.377170559939e-03 > 5 KSP preconditioned resid norm 1.289144645113e-04 true resid norm > 4.067177049739e-05 ||r(i)||/||b|| 1.361183607500e-03 > 6 KSP preconditioned resid norm 5.143993331403e-05 true resid norm > 2.794092581519e-05 ||r(i)||/||b|| 9.351137099001e-04 > 7 KSP preconditioned resid norm 2.361302329725e-05 true resid norm > 2.715477815463e-05 ||r(i)||/||b|| 9.088032912597e-04 > 8 KSP preconditioned resid norm 2.352126784416e-05 true resid norm > 2.732009930616e-05 ||r(i)||/||b|| 9.143361814852e-04 > Linear solve did not converge due to DIVERGED_INDEFINITE_MAT iterations 9 > > And again the same line is printed. Can somebody explain it for me? > Thanks. > > Adriano Cortes > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From pengxwang at hotmail.com Mon Jan 20 09:20:00 2014 From: pengxwang at hotmail.com (Roc Wang) Date: Mon, 20 Jan 2014 09:20:00 -0600 Subject: [petsc-users] Scalability of PETSc on vesta.alcf Message-ID: Hello, I am testing a petsc program on vesta.alcf.acl.gov. The scalability was fine when the number of ranks is less then 1024. However, when the 2048 ranks were used, the computation time increased. ( see below) No. of cores No. of iter timing (s) 1 & out of memory & 2 & out of memory & 4 & 300 & 3208.4 8 & 280 & 1521.52 16 & 335 & 901.54 32 & 340 & 456.06 64 & 356 & 253.41 128 & 371 & 132.43 256 & 374 & 63.8 512 & 396 & 32.13 1024 & 434 & 17.64 2048 & 455 & 30.76 The number of grid nodes in each dimension is 320*320*320. The number of ranks in each dimension for 1024 ranks is 8*8*16 and for 2048 ranks is 16*8*16. The Mat and Vec in the program were managed by DMDA. I believe PETSc has good scalability, however, it's just strange for me the computation time for 2048 ranks increased very much. I am wondering is it because of the memories shared by the cores of one node? Since the cases with less than 1024 ranks used 1024 node and one core per node while 2048 case used 32 by 64 cores. If it is because the amount of memories available for one core, how can I get better scalability for more cores (say 4096 cores)? I attached the runtime log files for 1024 by 1 and 2048(32by64). -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: p1024_p1_153436.output Type: application/octet-stream Size: 138709 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: p2048_32c64_148588.output Type: application/octet-stream Size: 249371 bytes Desc: not available URL: From jianjun.xiao at kit.edu Mon Jan 20 09:33:07 2014 From: jianjun.xiao at kit.edu (Xiao, Jianjun (IKET)) Date: Mon, 20 Jan 2014 16:33:07 +0100 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix Message-ID: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu> Dear developers, I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & & PETSC_NULL_INTEGER,da,ierr) CALL DMSetMatType(da,MATMPISBAIJ,ierr) CALL DMCreateMatrix(da,mat,ierr) A cluster with 64 processors was used for the testing. When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ mpirun: [25]PETSC ERROR: Argument out of range! mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. CALL DMSetMatType(da,MATMPIBAIJ,ierr) CALL DMCreateMatrix(da,gfmat,ierr) Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. JJ From quecat001 at gmail.com Mon Jan 20 09:51:06 2014 From: quecat001 at gmail.com (Que Cat) Date: Mon, 20 Jan 2014 09:51:06 -0600 Subject: [petsc-users] KSP linear solver In-Reply-To: References: Message-ID: Dear Matt, On Sat, Jan 18, 2014 at 1:54 PM, Matthew Knepley wrote: > On Sat, Jan 18, 2014 at 1:46 PM, Que Cat wrote: > Dear Petsc-Users, >> >> >> I debug my code. I solve the small linear system using KSP. >> The matrix is: >> >> row 0: (0, -123354) (1, 6.92922e-310) (2, 123354) (3, 1.38582e-309) >> row 1: (0, 1.3858e-309) (1, 91156.6) (2, 6.92901e-310) (3, 91156.6) >> row 2: (0, 8768.96) (1, 2.47033e-323) (2, -171955) (3, 1.02212e-316) >> (4, 163186) (5, 0) >> row 3: (0, 0) (1, -59201.7) (2, 0) (3, 156037) (4, 0) (5, 93996.1) >> row 4: (2, 13422.8) (3, 0) (4, -13422.8) (5, 0) >> row 5: (2, 0) (3, -58000.3) (4, 0) (5, 59201.7) >> >> > 1) Get rid of the entries that are 1e-300 or below > > Is there any way to get rid of these entries automatically? Or we have to do this explicitly? Thank you. Que > the RHS vector: >> >> -9115.66 >> -17760.5 >> -425.926 >> -35400.9 >> 9541.58 >> -17520.2 >> >> the solution I got was: >> >> -2.00943e+52 >> -1.17929e+18 >> -2.00943e+52 >> 7.121e+16 >> -2.00943e+52 >> -7.0943e+16 >> >> I checked with matlab and I got the totally different solution. I guess >> there is something wrong with the linear solver I set up as follow: >> >> KSPSetOperators(ksp, mat_A, mat_A, SAME_NONZERO_PATTERN); >> >> // set the linear solve options >> KSPSetType(ksp, KSPGMRES); >> KSPGMRESSetRestart(ksp, 100); >> // set preconditioning options >> KSPGetPC(ksp, &pc); >> PCSetType(pc, PCBJACOBI); >> KSPSetFromOptions(ksp); >> // Solve the linear system >> KSPSolve(ksp,vec_rhs,vec_sol); >> >> Could anyone give me a suggestion where should be the source of error? >> Thank you! >> > > 2) Always start with -pc_type lu -ksp_type preonly > > 3) It appears that your matrix is close to singular (LU will check) > > Matt > > >> Que >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Mon Jan 20 09:33:29 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 20 Jan 2014 08:33:29 -0700 Subject: [petsc-users] Scalability of PETSc on vesta.alcf In-Reply-To: References: Message-ID: <87iotemzw6.fsf@jedbrown.org> Roc Wang writes: > Hello, > > I am testing a petsc program on vesta.alcf.acl.gov. The scalability > was fine when the number of ranks is less then 1024. However, when > the 2048 ranks were used, Are you using c64 mode in all cases or did you run smaller fewer processes per node out to 1024? You can't do fair scaling with different modes because BG/Q has only 16 cores per node. The four hardware threads per core only cover latency, but do not significantly improve memory bandwidth. We're seeing most of the time in MatSolve, which does no communication. (Also MatMult, but your large fill makes the factors much heavier than the matrix itself.) -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From dmeiser at txcorp.com Mon Jan 20 10:27:47 2014 From: dmeiser at txcorp.com (Dominic Meiser) Date: Mon, 20 Jan 2014 09:27:47 -0700 Subject: [petsc-users] cudaSetDevice In-Reply-To: References: Message-ID: <52DD4E83.2020609@txcorp.com> Hi Jed, Harshad, A different solution to the problem of PETSc and a user code stepping on each other's feet with cudaSetDevice might be to use the CUDA driver API for device selection rather than the runtime API. If we were to explicitly manage a PETSc CUDA context using the driver API we can control what devices are being used without interfering with the mechanisms used by other parts of a client code for CUDA device selection (e.g. cudaSetDevice). PETSc's device management would be completely decoupled from the rest of an application. Of course this approach can be combined with lazy initialization as proposed by Karl. Whenever the first device function is called we create the PETSc CUDA context. The advantages of lazy initialization mentioned by Karl and Jed ensue (e.g. ability to run on machines without GPUs provided one is not using GPU functionality). Another advantage of a solution using the driver API is that device and context management would be very similar between CUDA and OpenCL backends. I realize that this proposal might be impractical as a near term solution since it involves a pretty major refactor of the CUDA context infrastructure. Furthermore, as far as I can tell, third party libraries that we rely on (e.g. cusp and cusparse) assume the runtime api. Perhaps these difficulties can be overcome? A possible near term solution would be to turn this around and to have applications with advanced device selection requirements use the driver API. Harshad, I'm not familiar with your code but would it be possible for you to use the driver API on your end to avoid conflicts with cudaSetDevice calls inside PETSc? Cheers, Dominic On 01/14/2014 09:27 AM, Harshad Sahasrabudhe wrote: > Hi Jed, > > Sometime back we talked about an interface which could handle other > libraries calling cudaSetDevice simultaneously with PETSc. For > example, in our case 2 different instances of PETSc calling cudaSetDevice. > > >Sure, but how will we actually share the device between libraries? What > >if the other library was not PETSc, but something else, and they also > >called cudaSetDevice, but with a different default mapping strategy? > > >We need an interface that handles this case. > > Do we already have any solution for this? If not, can we start looking > at this case? > > Thanks, > Harshad -- Dominic Meiser Tech-X Corporation 5621 Arapahoe Avenue Boulder, CO 80303 USA Telephone: 303-996-2036 Fax: 303-448-7756 www.txcorp.com From jed at jedbrown.org Mon Jan 20 10:59:47 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 20 Jan 2014 09:59:47 -0700 Subject: [petsc-users] Scalability of PETSc on vesta.alcf In-Reply-To: References: <87iotemzw6.fsf@jedbrown.org> Message-ID: <87a9eqmvwc.fsf@jedbrown.org> Please always use "reply-all" so that your messages go to the list. This is standard mailing list etiquette. It is important to preserve threading for people who find this discussion later and so that we do not waste our time re-answering the same questions that have already been answered in private side-conversations. You'll likely get an answer faster that way too. Roc Wang writes: > Thanks, Jed > > >> From: jed at jedbrown.org >> To: pengxwang at hotmail.com; petsc-users at mcs.anl.gov >> Subject: Re: [petsc-users] Scalability of PETSc on vesta.alcf >> Date: Mon, 20 Jan 2014 08:33:29 -0700 >> >> Roc Wang writes: >> >> > Hello, >> > >> > I am testing a petsc program on vesta.alcf.acl.gov. The scalability >> > was fine when the number of ranks is less then 1024. However, when >> > the 2048 ranks were used, >> >> Are you using c64 mode in all cases or did you run smaller fewer >> processes per node out to 1024? You can't do fair scaling with >> different modes because BG/Q has only 16 cores per node. > The ranks=2048 was with mode c64 and ranks <1024 were with c1. That is completely different. I recommend running c16 for all sizes; that should be efficient and reproducible. >> The four hardware threads per core only cover latency, but do not significantly >> improve memory bandwidth. > So, the bandwidth of c64 mode is kept same as c1, and it makes the computation slow down, right? > > I run a case of 1024 cores with c64 mode, the timing is 56.74 s which > is larger than c1 mode. So, it is still possible to have shorter > computation time with 4096 ranks in the same mode c64 compared with > 2048 (c64) and 1024(c64), right? Yes, that indicates that you're still scaling well. >>We're seeing most of the time in MatSolve, >> which does no communication. (Also MatMult, but your large fill makes >> the factors much heavier than the matrix itself.) > > Which fill did you meant to larger? Is there any solution to make the large fill better? ILU(3). Reduce the number of levels to reduce MatSolve time. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From hsahasra at purdue.edu Mon Jan 20 11:10:26 2014 From: hsahasra at purdue.edu (Harshad Sahasrabudhe) Date: Mon, 20 Jan 2014 12:10:26 -0500 Subject: [petsc-users] cudaSetDevice In-Reply-To: <52DD4E83.2020609@txcorp.com> References: <52DD4E83.2020609@txcorp.com> Message-ID: Hi Dominic, We use external libraries such as MAGMA and cuSPARSE. It looks like they use the runtime API as you mentioned above. At the moment, conflict is between the two instances of PETSc that we run (one each for real and complex). We are planning to write some code in CUDA and will use the driver API if need be. Does moving to the driver API look like something that can be included in PETSc 3.5? Harshad On Mon, Jan 20, 2014 at 11:27 AM, Dominic Meiser wrote: > Hi Jed, Harshad, > > A different solution to the problem of PETSc and a user code stepping on > each other's feet with cudaSetDevice might be to use the CUDA driver API > for device selection rather than the runtime API. If we were to explicitly > manage a PETSc CUDA context using the driver API we can control what > devices are being used without interfering with the mechanisms used by > other parts of a client code for CUDA device selection (e.g. > cudaSetDevice). PETSc's device management would be completely decoupled > from the rest of an application. > > Of course this approach can be combined with lazy initialization as > proposed by Karl. Whenever the first device function is called we create > the PETSc CUDA context. The advantages of lazy initialization mentioned by > Karl and Jed ensue (e.g. ability to run on machines without GPUs provided > one is not using GPU functionality). > > Another advantage of a solution using the driver API is that device and > context management would be very similar between CUDA and OpenCL backends. > > I realize that this proposal might be impractical as a near term solution > since it involves a pretty major refactor of the CUDA context > infrastructure. Furthermore, as far as I can tell, third party libraries > that we rely on (e.g. cusp and cusparse) assume the runtime api. Perhaps > these difficulties can be overcome? > > A possible near term solution would be to turn this around and to have > applications with advanced device selection requirements use the driver > API. Harshad, I'm not familiar with your code but would it be possible for > you to use the driver API on your end to avoid conflicts with cudaSetDevice > calls inside PETSc? > > Cheers, > Dominic > > > On 01/14/2014 09:27 AM, Harshad Sahasrabudhe wrote: > >> Hi Jed, >> >> Sometime back we talked about an interface which could handle other >> libraries calling cudaSetDevice simultaneously with PETSc. For example, in >> our case 2 different instances of PETSc calling cudaSetDevice. >> >> >Sure, but how will we actually share the device between libraries? What >> >if the other library was not PETSc, but something else, and they also >> >called cudaSetDevice, but with a different default mapping strategy? >> >> >We need an interface that handles this case. >> >> Do we already have any solution for this? If not, can we start looking at >> this case? >> >> Thanks, >> Harshad >> > > > -- > Dominic Meiser > Tech-X Corporation > 5621 Arapahoe Avenue > Boulder, CO 80303 > USA > Telephone: 303-996-2036 > Fax: 303-448-7756 > www.txcorp.com > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Jan 20 11:11:23 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 20 Jan 2014 11:11:23 -0600 Subject: [petsc-users] KSP linear solver In-Reply-To: References: Message-ID: On Mon, Jan 20, 2014 at 9:51 AM, Que Cat wrote: > Dear Matt, > > On Sat, Jan 18, 2014 at 1:54 PM, Matthew Knepley wrote: > >> On Sat, Jan 18, 2014 at 1:46 PM, Que Cat wrote: >> Dear Petsc-Users, >>> >>> >>> I debug my code. I solve the small linear system using KSP. >>> The matrix is: >>> >>> row 0: (0, -123354) (1, 6.92922e-310) (2, 123354) (3, 1.38582e-309) >>> row 1: (0, 1.3858e-309) (1, 91156.6) (2, 6.92901e-310) (3, 91156.6) >>> row 2: (0, 8768.96) (1, 2.47033e-323) (2, -171955) (3, 1.02212e-316) >>> (4, 163186) (5, 0) >>> row 3: (0, 0) (1, -59201.7) (2, 0) (3, 156037) (4, 0) (5, 93996.1) >>> row 4: (2, 13422.8) (3, 0) (4, -13422.8) (5, 0) >>> row 5: (2, 0) (3, -58000.3) (4, 0) (5, 59201.7) >>> >>> >> 1) Get rid of the entries that are 1e-300 or below >> >> > > Is there any way to get rid of these entries automatically? Or we have to > do this explicitly? Thank you. > I would do it manually, since it implies that something is wrong with your code. However, if you use the development branch, there is MatChop(). Matt > Que > > > > > >> the RHS vector: >>> >>> -9115.66 >>> -17760.5 >>> -425.926 >>> -35400.9 >>> 9541.58 >>> -17520.2 >>> >>> the solution I got was: >>> >>> -2.00943e+52 >>> -1.17929e+18 >>> -2.00943e+52 >>> 7.121e+16 >>> -2.00943e+52 >>> -7.0943e+16 >>> >>> I checked with matlab and I got the totally different solution. I guess >>> there is something wrong with the linear solver I set up as follow: >>> >>> KSPSetOperators(ksp, mat_A, mat_A, SAME_NONZERO_PATTERN); >>> >>> // set the linear solve options >>> KSPSetType(ksp, KSPGMRES); >>> KSPGMRESSetRestart(ksp, 100); >>> // set preconditioning options >>> KSPGetPC(ksp, &pc); >>> PCSetType(pc, PCBJACOBI); >>> KSPSetFromOptions(ksp); >>> // Solve the linear system >>> KSPSolve(ksp,vec_rhs,vec_sol); >>> >>> Could anyone give me a suggestion where should be the source of error? >>> Thank you! >>> >> >> 2) Always start with -pc_type lu -ksp_type preonly >> >> 3) It appears that your matrix is close to singular (LU will check) >> >> Matt >> >> >>> Que >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From pengxwang at hotmail.com Mon Jan 20 11:20:42 2014 From: pengxwang at hotmail.com (Roc Wang) Date: Mon, 20 Jan 2014 11:20:42 -0600 Subject: [petsc-users] Scalability of PETSc on vesta.alcf In-Reply-To: <87a9eqmvwc.fsf@jedbrown.org> References: <87iotemzw6.fsf@jedbrown.org> , <87a9eqmvwc.fsf@jedbrown.org> Message-ID: > From: jed at jedbrown.org > To: pengxwang at hotmail.com > CC: petsc-users at mcs.anl.gov > Subject: RE: [petsc-users] Scalability of PETSc on vesta.alcf > Date: Mon, 20 Jan 2014 09:59:47 -0700 > > Please always use "reply-all" so that your messages go to the list. > This is standard mailing list etiquette. It is important to preserve > threading for people who find this discussion later and so that we do > not waste our time re-answering the same questions that have already > been answered in private side-conversations. You'll likely get an > answer faster that way too. > > Roc Wang writes: > > > Thanks, Jed > > > > > >> From: jed at jedbrown.org > >> To: pengxwang at hotmail.com; petsc-users at mcs.anl.gov > >> Subject: Re: [petsc-users] Scalability of PETSc on vesta.alcf > >> Date: Mon, 20 Jan 2014 08:33:29 -0700 > >> > >> Roc Wang writes: > >> > >> > Hello, > >> > > >> > I am testing a petsc program on vesta.alcf.acl.gov. The scalability > >> > was fine when the number of ranks is less then 1024. However, when > >> > the 2048 ranks were used, > >> > >> Are you using c64 mode in all cases or did you run smaller fewer > >> processes per node out to 1024? You can't do fair scaling with > >> different modes because BG/Q has only 16 cores per node. > > The ranks=2048 was with mode c64 and ranks <1024 were with c1. > > That is completely different. I recommend running c16 for all sizes; > that should be efficient and reproducible. I tried c16 for 1024 ranks and 2048 ranks, but the job cannot run successfully. It seems the job was started but the program didn't execute. Please take a look at the attached log file for 1024 with c16 mode. Is this because some environment parameters I didn't set right? Actually, the same program is only able to run with 1024 ranks in c1, c2 and c32, c64 modes and 2048 ranks in c64 mode. > > >> The four hardware threads per core only cover latency, but do not significantly > >> improve memory bandwidth. > > So, the bandwidth of c64 mode is kept same as c1, and it makes the computation slow down, right? > > > > I run a case of 1024 cores with c64 mode, the timing is 56.74 s which > > is larger than c1 mode. So, it is still possible to have shorter > > computation time with 4096 ranks in the same mode c64 compared with > > 2048 (c64) and 1024(c64), right? > > Yes, that indicates that you're still scaling well. > > >>We're seeing most of the time in MatSolve, > >> which does no communication. (Also MatMult, but your large fill makes > >> the factors much heavier than the matrix itself.) > > > > Which fill did you meant to larger? Is there any solution to make the large fill better? > > ILU(3). Reduce the number of levels to reduce MatSolve time. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: p1024_p16_153427.cobaltlog Type: application/octet-stream Size: 1926 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: p1024_p16_153427.error Type: application/octet-stream Size: 2191 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: p1024_p16_153427.output Type: application/octet-stream Size: 27 bytes Desc: not available URL: From dmeiser at txcorp.com Mon Jan 20 11:31:11 2014 From: dmeiser at txcorp.com (Dominic Meiser) Date: Mon, 20 Jan 2014 10:31:11 -0700 Subject: [petsc-users] cudaSetDevice In-Reply-To: References: <52DD4E83.2020609@txcorp.com> Message-ID: <52DD5D5F.3050801@txcorp.com> Hi Harshad, On Mon 20 Jan 2014 10:10:26 AM MST, Harshad Sahasrabudhe wrote: > > Hi Dominic, > > We use external libraries such as MAGMA and cuSPARSE. It looks like > they use the runtime API as you mentioned above. At the moment, > conflict is between the two instances of PETSc that we run (one each > for real and complex). We are planning to write some code in CUDA and > will use the driver API if need be. Karl seems to know how to resolve the conflict between the two instances of PETSc. I'm not sure how exactly he is going to resolve this issue but apparently he thinks it's rather easy to do. > > Does moving to the driver API look like something that can be included > in PETSc 3.5? I doubt it given the challenge of dealing with third party libraries via the driver API. Quite possible somebody with a better understanding of the PETSc roadmap has a more informed opinion. Cheers, Dominic > > Harshad > > > On Mon, Jan 20, 2014 at 11:27 AM, Dominic Meiser > wrote: > > Hi Jed, Harshad, > > A different solution to the problem of PETSc and a user code > stepping on each other's feet with cudaSetDevice might be to use > the CUDA driver API for device selection rather than the runtime > API. If we were to explicitly manage a PETSc CUDA context using > the driver API we can control what devices are being used without > interfering with the mechanisms used by other parts of a client > code for CUDA device selection (e.g. cudaSetDevice). PETSc's > device management would be completely decoupled from the rest of > an application. > > Of course this approach can be combined with lazy initialization > as proposed by Karl. Whenever the first device function is called > we create the PETSc CUDA context. The advantages of lazy > initialization mentioned by Karl and Jed ensue (e.g. ability to > run on machines without GPUs provided one is not using GPU > functionality). > > Another advantage of a solution using the driver API is that > device and context management would be very similar between CUDA > and OpenCL backends. > > I realize that this proposal might be impractical as a near term > solution since it involves a pretty major refactor of the CUDA > context infrastructure. Furthermore, as far as I can tell, third > party libraries that we rely on (e.g. cusp and cusparse) assume > the runtime api. Perhaps these difficulties can be overcome? > > A possible near term solution would be to turn this around and to > have applications with advanced device selection requirements use > the driver API. Harshad, I'm not familiar with your code but would > it be possible for you to use the driver API on your end to avoid > conflicts with cudaSetDevice calls inside PETSc? > > Cheers, > Dominic > > > On 01/14/2014 09:27 AM, Harshad Sahasrabudhe wrote: > > Hi Jed, > > Sometime back we talked about an interface which could handle > other libraries calling cudaSetDevice simultaneously with > PETSc. For example, in our case 2 different instances of PETSc > calling cudaSetDevice. > > >Sure, but how will we actually share the device between > libraries? What > >if the other library was not PETSc, but something else, and > they also > >called cudaSetDevice, but with a different default mapping > strategy? > > >We need an interface that handles this case. > > Do we already have any solution for this? If not, can we start > looking at this case? > > Thanks, > Harshad > > > > -- > Dominic Meiser > Tech-X Corporation > 5621 Arapahoe Avenue > Boulder, CO 80303 > USA > Telephone: 303-996-2036 > Fax: 303-448-7756 > www.txcorp.com > > -- Dominic Meiser Tech-X Corporation 5621 Arapahoe Avenue Boulder, CO 80303 USA Telephone: 303-996-2036 Fax: 303-448-7756 www.txcorp.com From rupp at mcs.anl.gov Mon Jan 20 11:29:27 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Mon, 20 Jan 2014 18:29:27 +0100 Subject: [petsc-users] cudaSetDevice In-Reply-To: References: <52DD4E83.2020609@txcorp.com> Message-ID: <52DD5CF7.4080806@mcs.anl.gov> Hi guys, > We use external libraries such as MAGMA and cuSPARSE. It looks like they > use the runtime API as you mentioned above. At the moment, conflict is > between the two instances of PETSc that we run (one each for real and > complex). We are planning to write some code in CUDA and will use the > driver API if need be. > > Does moving to the driver API look like something that can be included > in PETSc 3.5? I can implement the lazy instantiation mechanism in early February. As for the CUDA driver API, this depends on the external libraries. PETSc's goal should be to stay away from low-level GPU fiddling as much as possible and only provide the glue needed to leverage existing GPU libraries in an MPI context. For example, I need to check whether e.g. thrust and CUSP are able to deal with such a context information. If not, then we have no other option but to rely on cudaSetDevice() anyway... Best regards, Karli > > On Mon, Jan 20, 2014 at 11:27 AM, Dominic Meiser > wrote: > > Hi Jed, Harshad, > > A different solution to the problem of PETSc and a user code > stepping on each other's feet with cudaSetDevice might be to use the > CUDA driver API for device selection rather than the runtime API. If > we were to explicitly manage a PETSc CUDA context using the driver > API we can control what devices are being used without interfering > with the mechanisms used by other parts of a client code for CUDA > device selection (e.g. cudaSetDevice). PETSc's device management > would be completely decoupled from the rest of an application. > > Of course this approach can be combined with lazy initialization as > proposed by Karl. Whenever the first device function is called we > create the PETSc CUDA context. The advantages of lazy initialization > mentioned by Karl and Jed ensue (e.g. ability to run on machines > without GPUs provided one is not using GPU functionality). > > Another advantage of a solution using the driver API is that device > and context management would be very similar between CUDA and OpenCL > backends. > > I realize that this proposal might be impractical as a near term > solution since it involves a pretty major refactor of the CUDA > context infrastructure. Furthermore, as far as I can tell, third > party libraries that we rely on (e.g. cusp and cusparse) assume the > runtime api. Perhaps these difficulties can be overcome? > > A possible near term solution would be to turn this around and to > have applications with advanced device selection requirements use > the driver API. Harshad, I'm not familiar with your code but would > it be possible for you to use the driver API on your end to avoid > conflicts with cudaSetDevice calls inside PETSc? > > Cheers, > Dominic > > > On 01/14/2014 09:27 AM, Harshad Sahasrabudhe wrote: > > Hi Jed, > > Sometime back we talked about an interface which could handle > other libraries calling cudaSetDevice simultaneously with PETSc. > For example, in our case 2 different instances of PETSc calling > cudaSetDevice. > > >Sure, but how will we actually share the device between > libraries? What > >if the other library was not PETSc, but something else, and > they also > >called cudaSetDevice, but with a different default mapping > strategy? > > >We need an interface that handles this case. > > Do we already have any solution for this? If not, can we start > looking at this case? > > Thanks, > Harshad > > > > -- > Dominic Meiser > Tech-X Corporation > 5621 Arapahoe Avenue > Boulder, CO 80303 > USA > Telephone: 303-996-2036 > Fax: 303-448-7756 > www.txcorp.com > > From jed at jedbrown.org Mon Jan 20 11:32:32 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 20 Jan 2014 10:32:32 -0700 Subject: [petsc-users] Scalability of PETSc on vesta.alcf In-Reply-To: References: <87iotemzw6.fsf@jedbrown.org> <87a9eqmvwc.fsf@jedbrown.org> Message-ID: <871u02mudr.fsf@jedbrown.org> Roc Wang writes: > I tried c16 for 1024 ranks and 2048 ranks, but the job cannot run > successfully. It seems the job was started but the program didn't > execute. Please take a look at the attached log file for 1024 with > c16 mode. Is this because some environment parameters I didn't set > right? Actually, the same program is only able to run with 1024 > ranks in c1, c2 and c32, c64 modes and 2048 ranks in c64 mode. You have non-scalable "Generate Vector" and VecView (the latter maybe because you don't use MPI-IO?). It is probably failing at this step. | qsub -A SUGAR -t 00:10:00 -n 512 --proccount 2048 --mode script ./vesta.job I thought you said you were trying c16? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From hsahasra at purdue.edu Mon Jan 20 11:39:32 2014 From: hsahasra at purdue.edu (Harshad Sahasrabudhe) Date: Mon, 20 Jan 2014 12:39:32 -0500 Subject: [petsc-users] cudaSetDevice In-Reply-To: <52DD5D5F.3050801@txcorp.com> References: <52DD4E83.2020609@txcorp.com> <52DD5D5F.3050801@txcorp.com> Message-ID: Hi Dominic, According to Karl, setting up an option for PETSc which specifies whether to call cudaSetDevice is easy with the lazy instantiation. So this seems to be the plan. Harshad On Mon, Jan 20, 2014 at 12:31 PM, Dominic Meiser wrote: > Hi Harshad, > > > On Mon 20 Jan 2014 10:10:26 AM MST, Harshad Sahasrabudhe wrote: > >> >> Hi Dominic, >> >> We use external libraries such as MAGMA and cuSPARSE. It looks like >> they use the runtime API as you mentioned above. At the moment, >> conflict is between the two instances of PETSc that we run (one each >> for real and complex). We are planning to write some code in CUDA and >> will use the driver API if need be. >> > Karl seems to know how to resolve the conflict between the two instances > of PETSc. I'm not sure how exactly he is going to resolve this issue but > apparently he thinks it's rather easy to do. > > >> Does moving to the driver API look like something that can be included >> in PETSc 3.5? >> > I doubt it given the challenge of dealing with third party libraries via > the driver API. Quite possible somebody with a better understanding of the > PETSc roadmap has a more informed opinion. > > Cheers, > Dominic > >> >> Harshad >> >> >> On Mon, Jan 20, 2014 at 11:27 AM, Dominic Meiser > > wrote: >> >> Hi Jed, Harshad, >> >> A different solution to the problem of PETSc and a user code >> stepping on each other's feet with cudaSetDevice might be to use >> the CUDA driver API for device selection rather than the runtime >> API. If we were to explicitly manage a PETSc CUDA context using >> the driver API we can control what devices are being used without >> interfering with the mechanisms used by other parts of a client >> code for CUDA device selection (e.g. cudaSetDevice). PETSc's >> device management would be completely decoupled from the rest of >> an application. >> >> Of course this approach can be combined with lazy initialization >> as proposed by Karl. Whenever the first device function is called >> we create the PETSc CUDA context. The advantages of lazy >> initialization mentioned by Karl and Jed ensue (e.g. ability to >> run on machines without GPUs provided one is not using GPU >> functionality). >> >> Another advantage of a solution using the driver API is that >> device and context management would be very similar between CUDA >> and OpenCL backends. >> >> I realize that this proposal might be impractical as a near term >> solution since it involves a pretty major refactor of the CUDA >> context infrastructure. Furthermore, as far as I can tell, third >> party libraries that we rely on (e.g. cusp and cusparse) assume >> the runtime api. Perhaps these difficulties can be overcome? >> >> A possible near term solution would be to turn this around and to >> have applications with advanced device selection requirements use >> the driver API. Harshad, I'm not familiar with your code but would >> it be possible for you to use the driver API on your end to avoid >> conflicts with cudaSetDevice calls inside PETSc? >> >> Cheers, >> Dominic >> >> >> On 01/14/2014 09:27 AM, Harshad Sahasrabudhe wrote: >> >> Hi Jed, >> >> Sometime back we talked about an interface which could handle >> other libraries calling cudaSetDevice simultaneously with >> PETSc. For example, in our case 2 different instances of PETSc >> calling cudaSetDevice. >> >> >Sure, but how will we actually share the device between >> libraries? What >> >if the other library was not PETSc, but something else, and >> they also >> >called cudaSetDevice, but with a different default mapping >> strategy? >> >> >We need an interface that handles this case. >> >> Do we already have any solution for this? If not, can we start >> looking at this case? >> >> Thanks, >> Harshad >> >> >> >> -- >> Dominic Meiser >> Tech-X Corporation >> 5621 Arapahoe Avenue >> Boulder, CO 80303 >> USA >> Telephone: 303-996-2036 >> Fax: 303-448-7756 >> www.txcorp.com >> >> >> > > > -- > Dominic Meiser > Tech-X Corporation > 5621 Arapahoe Avenue > Boulder, CO 80303 > USA > Telephone: 303-996-2036 > Fax: 303-448-7756 > www.txcorp.com > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Mon Jan 20 12:46:39 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 20 Jan 2014 12:46:39 -0600 Subject: [petsc-users] SNES convergence conditons Message-ID: Hello, I have a doubt regarding error condition for SNES. For F(X) = 0, where X is a vector X = [x1 x2 x3 ....]', my understanding is, for convergence criteria based on X, SNES checks for 1) norm2(dX)/(rTol*norm2(X) + absTol) < 1 and converged if true. I have two other options to consider, 2) 1/N * norm1 ( dX/ (rTol*abs(X)+aTol)) < 1 where N is the size of (X) 3) norm_infinity ( dX/ (rTol*abs(X)+aTol) ) < 1 Which is a better option ? rather how should one decide which one to use ? I am trying to solve the semiconductor transport equations (poisson + particle convection). I use a comercial solver called synopsys TCAD, and it uses option 2 to test the convergence along with option 1 applied for testing convergence based on Function norm. I am inclined towards option 3 is more local and a stronger condition than 1. If i solve a set of couple equation F1(X1,X2,X3) = 0, F2(X1,X2,X3) = 0, F3(X1,X2,X3) = 0 How do i use different absTol for X1, X2, and X3 to test the convergence criteria. Thanks Reddy From knepley at gmail.com Mon Jan 20 12:53:20 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 20 Jan 2014 12:53:20 -0600 Subject: [petsc-users] SNES convergence conditons In-Reply-To: References: Message-ID: On Mon, Jan 20, 2014 at 12:46 PM, Dharmendar Reddy wrote: > Hello, > I have a doubt regarding error condition for SNES. For F(X) = > 0, where X is a vector X = [x1 x2 x3 ....]', my understanding is, for > convergence criteria based on X, SNES checks for Convergence criteria should depend on what physics you want to resolve, the experiments you want to compare with, etc. I don't think we can tell you what to use. However, a) Your use of dX below is strange. Tolerances like these are vulnerable to stagnation of the iteration and I would never use them. PETSc uses something like norm2(F(x^k))/norm2(F(x^0)) < relTol || norm2(F(x^k)) < absTol which will tell you whether you have actually solved the equations b) The choice of norm depends on what needs to be accurate. norm2 is appropriate for energies (and other quadratic things), whereas norm1 makes sense for mass (and additive things). I don't have a physical motivation for norm_inf. c) You can always set your own convergence test Matt > 1) norm2(dX)/(rTol*norm2(X) + absTol) < 1 and converged if true. > > I have two other options to consider, > > 2) 1/N * norm1 ( dX/ (rTol*abs(X)+aTol)) < 1 where N is the size of (X) > > 3) norm_infinity ( dX/ (rTol*abs(X)+aTol) ) < 1 > > Which is a better option ? rather how should one decide which one to > use ? I am trying to solve the semiconductor transport equations > (poisson + particle convection). I use a comercial solver called > synopsys TCAD, and it uses option 2 to test the convergence along with > option 1 applied for testing convergence based on Function norm. > > I am inclined towards option 3 is more local and a stronger condition than > 1. > > If i solve a set of couple equation > > F1(X1,X2,X3) = 0, > F2(X1,X2,X3) = 0, > F3(X1,X2,X3) = 0 > > How do i use different absTol for X1, X2, and X3 to test the > convergence criteria. > > Thanks > Reddy > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Mon Jan 20 13:37:03 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 20 Jan 2014 13:37:03 -0600 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix In-Reply-To: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu> References: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu> Message-ID: <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> Thanks for reporting the problem. This is our error. Could you please send us the code that generates the error so we can reproduce the problem, determine the cause and fix it. Barry We need to know the exact values of imax,jmax, kmax etc to reproduce the problem. On Jan 20, 2014, at 9:33 AM, Xiao, Jianjun (IKET) wrote: > Dear developers, > > I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. > > CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & > & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & > & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& > & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & > & PETSC_NULL_INTEGER,da,ierr) > > CALL DMSetMatType(da,MATMPISBAIJ,ierr) > CALL DMCreateMatrix(da,mat,ierr) > > A cluster with 64 processors was used for the testing. > > When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. > > For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. > > When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. > > > mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ > mpirun: [25]PETSC ERROR: Argument out of range! > mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! > mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ > mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. > mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. > mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ > mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c > mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c > mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c > mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c > mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c > mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c > > Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. > > CALL DMSetMatType(da,MATMPIBAIJ,ierr) > CALL DMCreateMatrix(da,gfmat,ierr) > > Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. > > JJ From dharmareddy84 at gmail.com Mon Jan 20 15:58:16 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 20 Jan 2014 15:58:16 -0600 Subject: [petsc-users] KSP Tolerances for SNES Message-ID: Hello, I want to set KSP Tolerances for an SNES solver for F(X) = 0 as absTolKSP = maxval ( norm2F, absTolF_SNES) I am doing the above step based on Corollary 4 in the paper (http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.10.8477&rep=rep1&type=pdf) Since norm2(F) chnages as the simulation progress, how to change the tolerence for the ksp ? I am trying via KSPConvergenceTest by doing the following calls inside the test funciton call KSPSetTolerances call KSPDefaultConverged now for the second call i need to pass KSPDefaultConvergedCtx , how do i do this from Fortran ? Thanks Reddy From knepley at gmail.com Mon Jan 20 16:17:47 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 20 Jan 2014 16:17:47 -0600 Subject: [petsc-users] KSP Tolerances for SNES In-Reply-To: References: Message-ID: On Mon, Jan 20, 2014 at 3:58 PM, Dharmendar Reddy wrote: > Hello, > I want to set KSP Tolerances for an SNES solver for F(X) = 0 > > as absTolKSP = maxval ( norm2F, absTolF_SNES) > > I am doing the above step based on Corollary 4 in the paper > ( > http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.10.8477&rep=rep1&type=pdf > ) > It appears that Mike's paper was published before the reference everyone uses for this: S. C. Eisenstat and H. F. Walker, "Choosing the forcing terms in an inexact Newton method", SISC 17 (1), pp.16-32, 1996. We have it in PETSc: http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/SNES/SNESKSPSetUseEW.html Thanks, Matt > Since norm2(F) chnages as the simulation progress, how to change the > tolerence for the ksp ? > > I am trying via KSPConvergenceTest by doing the following calls inside > the test funciton > > call KSPSetTolerances > call KSPDefaultConverged > > now for the second call i need to pass KSPDefaultConvergedCtx , how do > i do this from Fortran ? > > Thanks > Reddy > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Mon Jan 20 16:27:08 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 20 Jan 2014 16:27:08 -0600 Subject: [petsc-users] KSP Tolerances for SNES In-Reply-To: References: Message-ID: Aaah...nice saves me work :) . Thanks On Mon, Jan 20, 2014 at 4:17 PM, Matthew Knepley wrote: > On Mon, Jan 20, 2014 at 3:58 PM, Dharmendar Reddy > wrote: >> >> Hello, >> I want to set KSP Tolerances for an SNES solver for F(X) = 0 >> >> as absTolKSP = maxval ( norm2F, absTolF_SNES) >> >> I am doing the above step based on Corollary 4 in the paper >> >> (http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.10.8477&rep=rep1&type=pdf) > > > It appears that Mike's paper was published before the reference everyone > uses for this: > > S. C. Eisenstat and H. F. Walker, "Choosing the forcing terms in an inexact > Newton method", SISC 17 (1), pp.16-32, 1996. > > We have it in PETSc: > > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/SNES/SNESKSPSetUseEW.html > > Thanks, > > Matt > >> >> Since norm2(F) chnages as the simulation progress, how to change the >> tolerence for the ksp ? >> >> I am trying via KSPConvergenceTest by doing the following calls inside >> the test funciton >> >> call KSPSetTolerances >> call KSPDefaultConverged >> >> now for the second call i need to pass KSPDefaultConvergedCtx , how do >> i do this from Fortran ? >> >> Thanks >> Reddy > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener From dharmareddy84 at gmail.com Mon Jan 20 19:14:17 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 20 Jan 2014 19:14:17 -0600 Subject: [petsc-users] SNESSetConvergenceTest Message-ID: Hello, I am getting a segmentation fault when i use SNESSetConvergenceTest from Fortran. I use the following: call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, this,PETSC_NULL_FUNCTION, ierr) (Line 1) where the soubtoutine is subroutine SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) implicit none #include "finclude/petsc.h" ! IO Variables SNES :: snes integer :: it PetscReal :: xnorm PetscReal :: gnorm PetscReal :: fnorm SNESConvergedReason :: reason type(Solver_t) :: this PetscErrorCode :: ierr ! Local Variables Vec :: X, dX Vec :: F, W, G real(WP) :: lambda print*, 'Calling custom test',it,xnorm,fnorm,gnorm !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) reason = SNES_DIVERGED_FUNCTION_COUNT end subroutine SNESConvergenceTest_snes Code works fine if the call at Line 1 is commented i.e, if i donot set the convergencetest I have attached the stack trace when the code fails (traceFail.log) and stack trace of the code which runs well (tracePass.log). Thanks Reddy -------------- next part -------------- A non-text attachment was scrubbed... Name: traceFail.log Type: application/octet-stream Size: 2142 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: tracePass.log Type: application/octet-stream Size: 2209 bytes Desc: not available URL: From pengxwang at hotmail.com Tue Jan 21 10:01:45 2014 From: pengxwang at hotmail.com (Roc Wang) Date: Tue, 21 Jan 2014 10:01:45 -0600 Subject: [petsc-users] Scalability of PETSc on vesta.alcf In-Reply-To: <871u02mudr.fsf@jedbrown.org> References: <87iotemzw6.fsf@jedbrown.org> <87a9eqmvwc.fsf@jedbrown.org> , <871u02mudr.fsf@jedbrown.org> Message-ID: > From: jed at jedbrown.org > To: pengxwang at hotmail.com > CC: petsc-users at mcs.anl.gov > Subject: RE: [petsc-users] Scalability of PETSc on vesta.alcf > Date: Mon, 20 Jan 2014 10:32:32 -0700 > > Roc Wang writes: > > I tried c16 for 1024 ranks and 2048 ranks, but the job cannot run > > successfully. It seems the job was started but the program didn't > > execute. Please take a look at the attached log file for 1024 with > > c16 mode. Is this because some environment parameters I didn't set > > right? Actually, the same program is only able to run with 1024 > > ranks in c1, c2 and c32, c64 modes and 2048 ranks in c64 mode. > > You have non-scalable "Generate Vector" and VecView (the latter maybe > because you don't use MPI-IO?). It is probably failing at this step. > > | qsub -A SUGAR -t 00:10:00 -n 512 --proccount 2048 --mode script ./vesta.job > > I thought you said you were trying c16? Yes, I said so. But, I tried both ways: qsub the executable and qsub script. The command is like this: qsub -n 64 -t 10 --mode c16 -O p1024_c16 --env "F00=a:BAR=b" ./x.r -ksp_type bcgsl -ksp_bcgsl_ell 1 -sub_pc_type ilu -sub_pc_factor_levels 3 -sub_ksp_type preonly -my_ksp_monitor true -ksp_view -log_summary the script: #!/bin/bash proN=1024 preName=p$proN echo "Script JOB with Jobid COBALT_JOBID="$preName qsub -A SUGAR -t 00:10:00 -n 64 --proccount $proN --mode script ./vesta.job and vesta.job: #!/bin/sh Nrank=1024 echo Starting Cobalt job script LOCARGS="--block $COBALT_PARTNAME ${COBALT_CORNER:+--corner} $COBALT_CORNER ${COBALT_SHAPE:+--shape} $COBALT_SHAPE" runjob $LOCARGS -n $Nrank -p 16 : x.r -ksp_type bcgsl -ksp_bcgsl_ell 1 -sub_pc_type ilu -sub_pc_factor_levels 3 -sub_ksp_type preonly -my_ksp_monitor true -ksp_view -log_summary echo End of jobscript.sh exit 0 Both of them cannot run the program successfully. In these two ways, the runtime log showed the job started but no output to stdout file. I just run the same program by: qsub -n 16 -t 10 --mode c64 -O n1024_c64 --env "F00=a:BAR=b" ./x.r -ksp_type bcgsl -ksp_bcgsl_ell 1 -sub_pc_type ilu -sub_pc_factor_levels 3 -sub_ksp_type preonly -my_ksp_monitor true -ksp_view -log_summary The job was able to run and the stdout file showed all the runtime output. If there is non-scalable "Generate Vector" and VecView (the latter maybe> because you don't use MPI-IO?), why is c64 mode able to run? It's sort of strange to me. Thanks. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: n1024_c16_mode.cobaltlog Type: application/octet-stream Size: 6317 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: n1024_c16_mode.error Type: application/octet-stream Size: 2179 bytes Desc: not available URL: From pengxwang at hotmail.com Tue Jan 21 13:14:04 2014 From: pengxwang at hotmail.com (Roc Wang) Date: Tue, 21 Jan 2014 13:14:04 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options Message-ID: Hi, I am trying to run a PETSc program with 1024 MPI ranks on vesta.alcf.anl.gov. The original program which was debugged and run successfully on other clusters and on vesta with a small number of ranks included many PETSc functions to use KSP solver, but they are commented off to test the PETSc initialization. Therefore, only PetscInitialize() and PetscFinalize() and some output functions are in the program. The command to run the job is: qsub -n -t 10 --mode --env "F00=a:BAR=b" ./x.r The total number of ranks is 1024 with different combinations of and , such as -n 64 --mode c16 or -n 16 --mode 64. The results showed that PetscInitialize() cannot start the petsc process with -n 64 --mode c16 since there is no output printed to stdout. The .cobaltlog file shows the job started but just .output file didn't record any output. The .error file is like: 2014-01-21 16:31:50.414 (INFO ) [0x40000a3bc20] 32092:ibm.runjob.AbstractOptions: using properties file /bgsys/local/etc/bg.properties 2014-01-21 16:31:50.416 (INFO ) [0x40000a3bc20] 32092:ibm.runjob.AbstractOptions: max open file descriptors: 65536 2014-01-21 16:31:50.416 (INFO ) [0x40000a3bc20] 32092:ibm.runjob.AbstractOptions: core file limit: 18446744073709551615 2014-01-21 16:31:50.416 (INFO ) [0x40000a3bc20] 32092:tatu.runjob.client: scheduler job id is 154599 2014-01-21 16:31:50.419 (INFO ) [0x400004034e0] 32092:tatu.runjob.monitor: monitor started 2014-01-21 16:31:50.421 (INFO ) [0x40000a3bc20] VST-00420-11731-64:32092:ibm.runjob.client.options.Parser: set local socket to runjob_mux from properties file 2014-01-21 16:31:53.111 (INFO ) [0x40000a3bc20] VST-00420-11731-64:729041:ibm.runjob.client.Job: job 729041 started 2014-01-21 16:32:03.603 (WARN ) [0x400004034e0] 32092:tatu.runjob.monitor: tracklib terminated with exit code 1 2014-01-21 16:41:09.554 (WARN ) [0x40000a3bc20] VST-00420-11731-64:ibm.runjob.LogSignalInfo: received signal 15 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] VST-00420-11731-64:ibm.runjob.LogSignalInfo: signal sent from USER 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] VST-00420-11731-64:ibm.runjob.LogSignalInfo: sent from pid 5894 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] VST-00420-11731-64:ibm.runjob.LogSignalInfo: could not read /proc/5894/exe 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] VST-00420-11731-64:ibm.runjob.LogSignalInfo: Permission denied 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] VST-00420-11731-64:ibm.runjob.LogSignalInfo: sent from uid 0 (root) 2014-01-21 16:41:11.248 (WARN ) [0x40000a3bc20] VST-00420-11731-64:729041:ibm.runjob.client.Job: terminated by signal 9 2014-01-21 16:41:11.248 (WARN ) [0x40000a3bc20] VST-00420-11731-64:729041:ibm.runjob.client.Job: abnormal termination by signal 9 from rank 720 2014-01-21 16:41:11.248 (INFO ) [0x40000a3bc20] tatu.runjob.client: task terminated by signal 9 2014-01-21 16:41:11.248 (INFO ) [0x400004034e0] 32092:tatu.runjob.monitor: monitor terminating 2014-01-21 16:41:11.250 (INFO ) [0x40000a3bc20] tatu.runjob.client: monitor completed The petsc can start with -n 16 --mode 64 and -n 1024 --mode c1. I also replaced PetscInitialize() with MPI_Init() and the program can start correctly with all combinations of the options. What is the reason cause this strange result? Thanks. -------------- next part -------------- An HTML attachment was scrubbed... URL: From quecat001 at gmail.com Tue Jan 21 13:22:34 2014 From: quecat001 at gmail.com (Que Cat) Date: Tue, 21 Jan 2014 13:22:34 -0600 Subject: [petsc-users] MatSetValue Message-ID: Hi Petsc-users, I confused about the MatSetValue from the manual. For example, I need to assembly three values A[0,1]=1 , A[3,2]=10 , A[5,2]=20 to the parallel matrix A. I can create a dense subblock matrix values that has dimension of m=1, n=3: values=[1 10 20], idxm=[0 3 5], idxn=[1 2 2]. But the manual says that "the value to be put in row idxm[i] and column idxn[j] is located in values[i*n+j]". So, for example i=1,j=1 will add values[1*3+1] to the matrix, which does not exist in values. What do I misunderstand the manual? We can set separate value to the parallel matrix, but it says that it is better to set a subblock matrix. Thank you. Que. -------------- next part -------------- An HTML attachment was scrubbed... URL: From billingsjj at ornl.gov Tue Jan 21 13:30:57 2014 From: billingsjj at ornl.gov (Jay J. Billings) Date: Tue, 21 Jan 2014 14:30:57 -0500 Subject: [petsc-users] Missing header file in 54f71ec? Message-ID: <52DECAF1.90405@ornl.gov> Everyone, I just merged master (54f71ec), compiled it and tried to compile against it. It fails with: /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h: In function ?PetscErrorCode PetscMemcpy(void*, const void*, size_t)?: /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h:1900: error: ?memcpy? was not declared in this scope /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h: In function ?PetscErrorCode PetscMemzero(void*, size_t)?: /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h:1949: error: ?memset? was not declared in this scope It worked with my build from Friday. I have stdlib and memory on my machine, a RHEL6 x86_64 box with gcc-4.4.7. I can probably fix it locally by adding the include and circumventing the macros, but I thought you guys might want to look into it. Jay -- Jay Jay Billings Oak Ridge National Laboratory Twitter Handle: @jayjaybillings From billingsjj at ornl.gov Tue Jan 21 13:34:48 2014 From: billingsjj at ornl.gov (Jay J. Billings) Date: Tue, 21 Jan 2014 14:34:48 -0500 Subject: [petsc-users] Missing header file in 54f71ec? In-Reply-To: <52DECAF1.90405@ornl.gov> References: <52DECAF1.90405@ornl.gov> Message-ID: <52DECBD8.5000302@ornl.gov> It looks like this might have been caused by the change to configure.py and petscsys.h in 5affe1d: https://bitbucket.org/petsc/petsc/commits/5affe1da4b5ff6ba9c99ae0e08ad5ae60b099835 Jay On 01/21/2014 02:30 PM, Jay J. Billings wrote: > Everyone, > > I just merged master (54f71ec), compiled it and tried to compile against > it. It fails with: > > /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h: In > function ?PetscErrorCode PetscMemcpy(void*, const void*, size_t)?: > /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h:1900: > error: ?memcpy? was not declared in this scope > /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h: In > function ?PetscErrorCode PetscMemzero(void*, size_t)?: > /home/jay/programs/petsc-latest_mpich-3.0.1/include/petscsys.h:1949: > error: ?memset? was not declared in this scope > > It worked with my build from Friday. I have stdlib and memory on my > machine, a RHEL6 x86_64 box with gcc-4.4.7. I can probably fix it > locally by adding the include and circumventing the macros, but I > thought you guys might want to look into it. > > Jay > -- Jay Jay Billings Oak Ridge National Laboratory Twitter Handle: @jayjaybillings From bsmith at mcs.anl.gov Tue Jan 21 14:25:08 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 21 Jan 2014 14:25:08 -0600 Subject: [petsc-users] MatSetValue In-Reply-To: References: Message-ID: On Jan 21, 2014, at 1:22 PM, Que Cat wrote: > Hi Petsc-users, > I confused about the MatSetValue from the manual. > For example, I need to assembly three values A[0,1]=1 , A[3,2]=10 , A[5,2]=20 to the parallel matrix A. I can create a dense subblock matrix values that has dimension of m=1, n=3: values=[1 10 20], idxm=[0 3 5], idxn=[1 2 2]. No this does not do that. the above idxm, idxn does not mean you are setting entries (0,1) (3,2) (5,2) it means you are setting the 1, 2 and 2 columns of the 0th, 3rd and 5th rows so 9 = 3x3 values. (which doesn?t make sense since you won?t set the 2 columns twice). > But the manual says that "the value to be put in row idxm[i] and column idxn[j] is located in values[i*n+j]". So, for example i=1,j=1 will add values[1*3+1] to the matrix, which does not exist in values. What do I misunderstand the manual? We can set separate value to the parallel matrix, but it says that it is better to set a subblock matrix. > Thank you. > > Que. From quecat001 at gmail.com Tue Jan 21 15:26:08 2014 From: quecat001 at gmail.com (Que Cat) Date: Tue, 21 Jan 2014 15:26:08 -0600 Subject: [petsc-users] MatSetValue In-Reply-To: References: Message-ID: Hi Barry, Thanks for your correction. This mean I have to set up values to be a 3x3 values matrix and set values[0]=1, values[4]=10, values[8]=20 and all other elements of values[i]=0 for i=1,2,3,5,6,7. But, by doing this way, it will also assembly 0 to other 6 location of the global matrix at (0,2) (3,1) (3,2) ..... and it may break the sparse matrix format of A. To prevent this, we must assembly one by one element (do the MatSetValues three times for this case) or is there any other way to set three elements of A at one time? On Tue, Jan 21, 2014 at 2:25 PM, Barry Smith wrote: > > On Jan 21, 2014, at 1:22 PM, Que Cat wrote: > > > Hi Petsc-users, > > I confused about the MatSetValue from the manual. > > For example, I need to assembly three values A[0,1]=1 , A[3,2]=10 , > A[5,2]=20 to the parallel matrix A. I can create a dense subblock matrix > values that has dimension of m=1, n=3: values=[1 10 20], idxm=[0 3 5], > idxn=[1 2 2]. > > No this does not do that. the above idxm, idxn does not mean you are > setting entries (0,1) (3,2) (5,2) it means you are setting the 1, 2 and 2 > columns of the 0th, 3rd and 5th rows so 9 = 3x3 values. (which doesn?t make > sense since you won?t set the 2 columns twice). > > But the manual says that "the value to be put in row idxm[i] and column > idxn[j] is located in values[i*n+j]". So, for example i=1,j=1 will add > values[1*3+1] to the matrix, which does not exist in values. What do I > misunderstand the manual? We can set separate value to the parallel matrix, > but it says that it is better to set a subblock matrix. > > Thank you. > > > > Que. > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Tue Jan 21 15:44:36 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 21 Jan 2014 15:44:36 -0600 Subject: [petsc-users] MatSetValue In-Reply-To: References: Message-ID: <5C7586CA-2659-457D-B883-AF3E1D6778B3@mcs.anl.gov> On Jan 21, 2014, at 3:26 PM, Que Cat wrote: > Hi Barry, > > Thanks for your correction. This mean I have to set up values to be a 3x3 values matrix and set values[0]=1, values[4]=10, values[8]=20 and all other elements of values[i]=0 for i=1,2,3,5,6,7. But, by doing this way, it will also assembly 0 to other 6 location of the global matrix at (0,2) (3,1) (3,2) ..... and it may break the sparse matrix format of A. To prevent this, we must assembly one by one element (do the MatSetValues three times for this case) or is there any other way to set three elements of A at one time? Just set the three values with three calls. You should set blocks WHEN you can set blocks but not set blocks when you cannot set blocks. > > > On Tue, Jan 21, 2014 at 2:25 PM, Barry Smith wrote: > > On Jan 21, 2014, at 1:22 PM, Que Cat wrote: > > > Hi Petsc-users, > > I confused about the MatSetValue from the manual. > > For example, I need to assembly three values A[0,1]=1 , A[3,2]=10 , A[5,2]=20 to the parallel matrix A. I can create a dense subblock matrix values that has dimension of m=1, n=3: values=[1 10 20], idxm=[0 3 5], idxn=[1 2 2]. > > No this does not do that. the above idxm, idxn does not mean you are setting entries (0,1) (3,2) (5,2) it means you are setting the 1, 2 and 2 columns of the 0th, 3rd and 5th rows so 9 = 3x3 values. (which doesn?t make sense since you won?t set the 2 columns twice). > > But the manual says that "the value to be put in row idxm[i] and column idxn[j] is located in values[i*n+j]". So, for example i=1,j=1 will add values[1*3+1] to the matrix, which does not exist in values. What do I misunderstand the manual? We can set separate value to the parallel matrix, but it says that it is better to set a subblock matrix. > > Thank you. > > > > Que. > > From dharmareddy84 at gmail.com Tue Jan 21 21:52:41 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Tue, 21 Jan 2014 21:52:41 -0600 Subject: [petsc-users] DMLocalToGlobal Message-ID: Hello, I am trying to understand the usage rule for DMLocalToGlobalBegin/End. I have a sequence of calls like this: call DMLocalToGlobalBegin(dm, localLB, INSERT_VALUES, LB, ierr) ----- (1) call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ------ (2) call DMLocalToGlobalEnd(dm, localLB, INSERT_VALUES, LB, ierr) ------- (3) call DMLocalToGlobalEnd(dm, localUB, INSERT_VALUES, UB, ierr) --------(4) call SNESVISetVariableBounds(snes,LB,UB, ierr) SNES fails to run. I get function norm zero right in the first call and simulation ends. If i change the order of DM calls above to 1,3,2,4 then code works as expected Does that mean the End call should occur immediately after Begin call ? Thanks Reddy From bsmith at mcs.anl.gov Tue Jan 21 22:04:26 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 21 Jan 2014 22:04:26 -0600 Subject: [petsc-users] DMLocalToGlobal In-Reply-To: References: Message-ID: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> On Jan 21, 2014, at 9:52 PM, Dharmendar Reddy wrote: > Hello, > I am trying to understand the usage rule for DMLocalToGlobalBegin/End. > > I have a sequence of calls like this: > > call DMLocalToGlobalBegin(dm, localLB, INSERT_VALUES, LB, ierr) ----- (1) > > call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ------ (2) > > call DMLocalToGlobalEnd(dm, localLB, INSERT_VALUES, LB, ierr) ------- (3) > > call DMLocalToGlobalEnd(dm, localUB, INSERT_VALUES, UB, ierr) --------(4) > > > call SNESVISetVariableBounds(snes,LB,UB, ierr) > > > SNES fails to run. I get function norm zero right in the first call > and simulation ends. > > > If i change the order of DM calls above to > > 1,3,2,4 then code works as expected > > > Does that mean the End call should occur immediately after Begin call ? Currently they do need to be called in that order. Note that if you checked the ierr after (2) it would have indicated an error condition. I am surprised that PETSc didn?t print an error message ?Scatter ctx already in use?. Note in FORTRAN you can do a lazy check of ierr with call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ; CHKERRQ(ierr) so it does not make the Fortran code particularly ugly just put the CHKERRQ(ierr) on the same line as the code Barry > > > Thanks > Reddy From dharmareddy84 at gmail.com Tue Jan 21 22:21:24 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Tue, 21 Jan 2014 22:21:24 -0600 Subject: [petsc-users] DMLocalToGlobal In-Reply-To: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> References: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> Message-ID: Thanks. I assumed it to work. Can you add a note to man pages ? It took me a lot of iterations to identify the incorrect usage as the cause. I will use CHKERRQ. Thanks Reddy On Tue, Jan 21, 2014 at 10:04 PM, Barry Smith wrote: > > On Jan 21, 2014, at 9:52 PM, Dharmendar Reddy wrote: > >> Hello, >> I am trying to understand the usage rule for DMLocalToGlobalBegin/End. >> >> I have a sequence of calls like this: >> >> call DMLocalToGlobalBegin(dm, localLB, INSERT_VALUES, LB, ierr) ----- (1) >> >> call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ------ (2) >> >> call DMLocalToGlobalEnd(dm, localLB, INSERT_VALUES, LB, ierr) ------- (3) >> >> call DMLocalToGlobalEnd(dm, localUB, INSERT_VALUES, UB, ierr) --------(4) >> >> >> call SNESVISetVariableBounds(snes,LB,UB, ierr) >> >> >> SNES fails to run. I get function norm zero right in the first call >> and simulation ends. >> >> >> If i change the order of DM calls above to >> >> 1,3,2,4 then code works as expected >> >> >> Does that mean the End call should occur immediately after Begin call ? > > Currently they do need to be called in that order. Note that if you checked the ierr after (2) it would have indicated an error condition. I am surprised that PETSc didn?t print an error message ?Scatter ctx already in use?. Note in FORTRAN you can do a lazy check of ierr with > > call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ; CHKERRQ(ierr) > > so it does not make the Fortran code particularly ugly just put the CHKERRQ(ierr) on the same line as the code > > > Barry > > >> >> >> Thanks >> Reddy > -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From dharmareddy84 at gmail.com Tue Jan 21 22:52:41 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Tue, 21 Jan 2014 22:52:41 -0600 Subject: [petsc-users] DMLocalToGlobal In-Reply-To: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> References: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> Message-ID: Hello, I did the test again with CHKERRQ(ierr) after each line in sequence 1 to 4. I get ierr = 0 lb begin: 0 ub begin: 0 lb end: 0 ub end : 0 Thanks Reddy On Tue, Jan 21, 2014 at 10:04 PM, Barry Smith wrote: > > On Jan 21, 2014, at 9:52 PM, Dharmendar Reddy wrote: > >> Hello, >> I am trying to understand the usage rule for DMLocalToGlobalBegin/End. >> >> I have a sequence of calls like this: >> >> call DMLocalToGlobalBegin(dm, localLB, INSERT_VALUES, LB, ierr) ----- (1) >> >> call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ------ (2) >> >> call DMLocalToGlobalEnd(dm, localLB, INSERT_VALUES, LB, ierr) ------- (3) >> >> call DMLocalToGlobalEnd(dm, localUB, INSERT_VALUES, UB, ierr) --------(4) >> >> >> call SNESVISetVariableBounds(snes,LB,UB, ierr) >> >> >> SNES fails to run. I get function norm zero right in the first call >> and simulation ends. >> >> >> If i change the order of DM calls above to >> >> 1,3,2,4 then code works as expected >> >> >> Does that mean the End call should occur immediately after Begin call ? > > Currently they do need to be called in that order. Note that if you checked the ierr after (2) it would have indicated an error condition. I am surprised that PETSc didn?t print an error message ?Scatter ctx already in use?. Note in FORTRAN you can do a lazy check of ierr with > > call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ; CHKERRQ(ierr) > > so it does not make the Fortran code particularly ugly just put the CHKERRQ(ierr) on the same line as the code > > > Barry > > >> >> >> Thanks >> Reddy > -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From jianjun.xiao at kit.edu Wed Jan 22 05:15:34 2014 From: jianjun.xiao at kit.edu (Xiao, Jianjun (IKET)) Date: Wed, 22 Jan 2014 12:15:34 +0100 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix In-Reply-To: <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> References: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu>, <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> Message-ID: <56D054AF2E93E044AC1D2685709D2868CA00A26069@KIT-MSX-07.kit.edu> Dear Barry, I modified ex44f.F90, and ran the case on my 64-processors cluster. Please find the file in the attachment. I tried various number of processors. It seems that for number of processors: 1, 2, 3, 4, 5, 6, 7, 8, 16, 32 and 64 it works fine. For numbers such as 20, 30, 31, 60, 61 and 62, I got the error below. This time, even for MATMPIBAIJ I got error. I did not try all the numbers between 1-64. If you need more information, please let me know. Thank you for your help. Best regards JJ For MATMPISBAIJ, I got the error like this: [55]PETSC ERROR: [55] MatAssemblyBegin_MPISBAIJ line 483 src/mat/impls/sbaij/mpi/mpisbaij.c [55]PETSC ERROR: [55] MatAssemblyBegin line 4865 src/mat/interface/matrix.c [55]PETSC ERROR: [55] DMCreateMatrix_DA_3d_MPISBAIJ line 1694 src/dm/impls/da/fdda.c [55]PETSC ERROR: [55] DMCreateMatrix_DA line 626 src/dm/impls/da/fdda.c [55]PETSC ERROR: [55] DMCreateMatrix line 1002 src/dm/interface/dm.c [55]PETSC ERROR: --------------------- Error Message ------------------------------------ [55]PETSC ERROR: Signal received! [55]PETSC ERROR: ------------------------------------------------------------------------ [55]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 [55]PETSC ERROR: See docs/changes/index.html for recent updates. [55]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [55]PETSC ERROR: See docs/index.html for manual pages. [55]PETSC ERROR: ------------------------------------------------------------------------ [55]PETSC ERROR: ./ex44f on a linux-gnu named cluster07 by xiao Wed Jan 22 11:54:32 2014 [55]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib [55]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 [55]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 [55]PETSC ERROR: ------------------------------------------------------------------------ [55]PETSC ERROR: User provided function() line 0 in unknown file For MATMPIBAIJ, I got the error like this: [44]PETSC ERROR: --------------------- Error Message ------------------------------------ [44]PETSC ERROR: Argument out of range! [44]PETSC ERROR: Trying to set preallocation for row 6678 less than first local row 6714! [44]PETSC ERROR: ------------------------------------------------------------------------ [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 [44]PETSC ERROR: See docs/changes/index.html for recent updates. [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [44]PETSC ERROR: See docs/index.html for manual pages. [44]PETSC ERROR: ------------------------------------------------------------------------ [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 [44]PETSC ERROR: ------------------------------------------------------------------------ [44]PETSC ERROR: DMCreateMatrix_DA_3d_MPIBAIJ() line 1508 in src/dm/impls/da/fdda.c [44]PETSC ERROR: DMCreateMatrix_DA() line 771 in src/dm/impls/da/fdda.c [44]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c [44]PETSC ERROR: --------------------- Error Message ------------------------------------ [44]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind! [44]PETSC ERROR: Invalid Pointer to Object: Parameter # 1! [44]PETSC ERROR: ------------------------------------------------------------------------ [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 [44]PETSC ERROR: See docs/changes/index.html for recent updates. [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [44]PETSC ERROR: See docs/index.html for manual pages. [44]PETSC ERROR: ------------------------------------------------------------------------ [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 [44]PETSC ERROR: ------------------------------------------------------------------------ [44]PETSC ERROR: MatDestroy() line 1029 in src/mat/interface/matrix.c ________________________________________ From: Barry Smith [bsmith at mcs.anl.gov] Sent: Monday, January 20, 2014 8:37 PM To: Xiao, Jianjun (IKET) Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix Thanks for reporting the problem. This is our error. Could you please send us the code that generates the error so we can reproduce the problem, determine the cause and fix it. Barry We need to know the exact values of imax,jmax, kmax etc to reproduce the problem. On Jan 20, 2014, at 9:33 AM, Xiao, Jianjun (IKET) wrote: > Dear developers, > > I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. > > CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & > & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & > & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& > & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & > & PETSC_NULL_INTEGER,da,ierr) > > CALL DMSetMatType(da,MATMPISBAIJ,ierr) > CALL DMCreateMatrix(da,mat,ierr) > > A cluster with 64 processors was used for the testing. > > When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. > > For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. > > When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. > > > mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ > mpirun: [25]PETSC ERROR: Argument out of range! > mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! > mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ > mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. > mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. > mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ > mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c > mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c > mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c > mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c > mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c > mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c > > Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. > > CALL DMSetMatType(da,MATMPIBAIJ,ierr) > CALL DMCreateMatrix(da,gfmat,ierr) > > Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. > > JJ -------------- next part -------------- A non-text attachment was scrubbed... Name: ex44f.F90 Type: text/x-fortran Size: 3322 bytes Desc: ex44f.F90 URL: From icelee.lee at gmail.com Wed Jan 22 08:30:17 2014 From: icelee.lee at gmail.com (Bin Li) Date: Wed, 22 Jan 2014 15:30:17 +0100 Subject: [petsc-users] PETSC with LBFGS solver Message-ID: Dear All, I want to use the LBFGS solver, but I can not find any example on how to code it ? If anyone have some example or can give me some tips ? Thank you very much. -- Best regard. Bin -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Wed Jan 22 08:40:38 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 08:40:38 -0600 Subject: [petsc-users] PETSC with LBFGS solver In-Reply-To: References: Message-ID: On Wed, Jan 22, 2014 at 8:30 AM, Bin Li wrote: > Dear All, > > I want to use the LBFGS solver, but I can not find any example on how to > code it ? > It is the default for -snes_type qn. Use -snes_view to check Matt > If anyone have some example or can give me some tips ? Thank you very > much. > > -- > > Best regard. > > Bin > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From daveliu at mit.edu Wed Jan 22 09:17:05 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 22 Jan 2014 10:17:05 -0500 Subject: [petsc-users] "--with-cxx=CC" option for ./configure? Message-ID: Hi, I?m trying to run a solver code I wrote in C++ on the Kraken supercomputer. Apparently Kraken already has a pre-built version of Petsc that is optimized for their Cray architecture. So I try compiling my code, and as expected, get an error message saying that ?? not found, which I?m guessing is because Petsc wasn?t configured with ?-with-c-language=cxx?. Fair enough. However, at the end of the error message, it gives me the list of things it *was* configured with, and I see the flags ?--with-cc=cc? and ?--with-cxx=CC?. Does anyone know what that second flag means? best, David -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Jan 22 09:28:31 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 09:28:31 -0600 Subject: [petsc-users] "--with-cxx=CC" option for ./configure? In-Reply-To: References: Message-ID: <9D494451-FB3B-4306-8A4E-880C0B0E8391@mcs.anl.gov> On Jan 22, 2014, at 9:17 AM, David Liu wrote: > Hi, > > I?m trying to run a solver code I wrote in C++ on the Kraken supercomputer. Apparently Kraken already has a pre-built version of Petsc that is optimized for their Cray architecture. So I try compiling my code, and as expected, get an error message saying that ?? not found, which I?m guessing is because Petsc wasn?t configured with ?-with-c-language=cxx?. Fair enough. You can still use the C++ compiler to compiler YOUR code even without PETSc being built with -with-c-language=cxx > > However, at the end of the error message, it gives me the list of things it *was* configured with, and I see the flags ?--with-cc=cc? and ?--with-cxx=CC?. Does anyone know what that second flag means? That is the C++ compiler. So in this case just use CC to compile your code. (note Cray auto-magically has the compiler know all about the MPI includes etc). Barry > > best, > David From jed at jedbrown.org Tue Jan 21 10:13:29 2014 From: jed at jedbrown.org (Jed Brown) Date: Tue, 21 Jan 2014 09:13:29 -0700 Subject: [petsc-users] Scalability of PETSc on vesta.alcf In-Reply-To: References: <87iotemzw6.fsf@jedbrown.org> <87a9eqmvwc.fsf@jedbrown.org> <871u02mudr.fsf@jedbrown.org> Message-ID: <87k3dtia8m.fsf@jedbrown.org> Roc Wang writes: >> From: jed at jedbrown.org >> To: pengxwang at hotmail.com >> CC: petsc-users at mcs.anl.gov >> Subject: RE: [petsc-users] Scalability of PETSc on vesta.alcf >> Date: Mon, 20 Jan 2014 10:32:32 -0700 >> >> Roc Wang writes: >> > I tried c16 for 1024 ranks and 2048 ranks, but the job cannot run >> > successfully. It seems the job was started but the program didn't >> > execute. Please take a look at the attached log file for 1024 with >> > c16 mode. Is this because some environment parameters I didn't set >> > right? Actually, the same program is only able to run with 1024 >> > ranks in c1, c2 and c32, c64 modes and 2048 ranks in c64 mode. >> >> You have non-scalable "Generate Vector" and VecView (the latter maybe >> because you don't use MPI-IO?). It is probably failing at this step. >> >> | qsub -A SUGAR -t 00:10:00 -n 512 --proccount 2048 --mode script ./vesta.job >> >> I thought you said you were trying c16? > > Yes, I said so. But, I tried both ways: qsub the executable and qsub script. The command is like this: I was trying to rectify the inconsistency between "-n 512 --proccount 2048" and using c16. Anyway, I suspect something going wrong in your I/O or (possibly, we've seen a few lately) tripping over a system bug causing something to hang. You should start reducing the code/problem size and perhaps profiling with more wall time to see what is taking so long. Find something that doesn't crash/hang/exceed wall time, then bisect to identify the underlying problem. We can't say more with the information you have provided. > qsub -n 64 -t 10 --mode c16 -O p1024_c16 --env "F00=a:BAR=b" ./x.r -ksp_type bcgsl -ksp_bcgsl_ell 1 -sub_pc_type ilu -sub_pc_factor_levels 3 -sub_ksp_type preonly -my_ksp_monitor true -ksp_view -log_summary > > the script: > > #!/bin/bash > > proN=1024 > > preName=p$proN > > echo "Script JOB with Jobid COBALT_JOBID="$preName > > > qsub -A SUGAR -t 00:10:00 -n 64 --proccount $proN --mode script ./vesta.job > > > and vesta.job: > > #!/bin/sh > Nrank=1024 > echo Starting Cobalt job script > > LOCARGS="--block $COBALT_PARTNAME ${COBALT_CORNER:+--corner} $COBALT_CORNER ${COBALT_SHAPE:+--shape} $COBALT_SHAPE" > > runjob $LOCARGS -n $Nrank -p 16 : x.r -ksp_type bcgsl -ksp_bcgsl_ell 1 -sub_pc_type ilu -sub_pc_factor_levels 3 -sub_ksp_type preonly -my_ksp_monitor true -ksp_view -log_summary > > echo End of jobscript.sh > > exit 0 > > Both of them cannot run the program successfully. In these two ways, the runtime log showed the job started but no output to stdout file. > > I just run the same program by: > qsub -n 16 -t 10 --mode c64 -O n1024_c64 --env "F00=a:BAR=b" ./x.r -ksp_type bcgsl -ksp_bcgsl_ell 1 -sub_pc_type ilu -sub_pc_factor_levels 3 -sub_ksp_type preonly -my_ksp_monitor true -ksp_view -log_summary > > The job was able to run and the stdout file showed all the runtime output. If there is non-scalable "Generate Vector" and VecView (the latter maybe> because you don't use MPI-IO?), why is c64 mode able to run? It's sort of strange to me. Thanks. > -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jed at jedbrown.org Tue Jan 21 21:53:19 2014 From: jed at jedbrown.org (Jed Brown) Date: Tue, 21 Jan 2014 20:53:19 -0700 Subject: [petsc-users] Missing header file in 54f71ec? In-Reply-To: <52DECBD8.5000302@ornl.gov> References: <52DECAF1.90405@ornl.gov> <52DECBD8.5000302@ornl.gov> Message-ID: <87ob34hdu8.fsf@jedbrown.org> "Jay J. Billings" writes: > It looks like this might have been caused by the change to configure.py > and petscsys.h in 5affe1d: > > https://bitbucket.org/petsc/petsc/commits/5affe1da4b5ff6ba9c99ae0e08ad5ae60b099835 Please send configure.log and make.log. C89 and others (SVr4, 4.3BSD, C99, POSIX.1-2001) say that string.h provides memcpy and memset. string.h is included and this change built cleanly on all our test machines. commit a3aaec0ab474bb386780073594fdc8ac7d2aa0be Author: Jed Brown Date: Thu Jan 9 14:40:33 2014 -0700 petscsys.h: find memcpy and memset in string.h C89 and later say that memcpy and memset are in string.h. With glibc, memory.h merely includes string.h, and one user reported an error due to undefined memset (which I cannot reproduce). So quit bothering with nonstandard memory.h and just include string.h. Reported-by: Alexander Krimm -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jed at jedbrown.org Tue Jan 21 23:42:14 2014 From: jed at jedbrown.org (Jed Brown) Date: Tue, 21 Jan 2014 22:42:14 -0700 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: References: Message-ID: <87d2jkh8sp.fsf@jedbrown.org> Roc Wang writes: > Hi, > > I am trying to run a PETSc program with 1024 MPI ranks on > vesta.alcf.anl.gov. The original program which was debugged and > run successfully on other clusters and on vesta with a small number > of ranks included many PETSc functions to use KSP solver, but they > are commented off to test the PETSc initialization. Therefore, only > PetscInitialize() and PetscFinalize() and some output functions are > in the program. The command to run the job is: > > qsub -n -t 10 --mode --env > "F00=a:BAR=b" ./x.r > > The total number of ranks is 1024 with different combinations of > and , such as -n 64 --mode c16 or -n > 16 --mode 64. Please send configure.log. Also try running with PAMID_COLLECTIVES=0 in the environment. Vesta periodically has "upgraded" versions of drivers From IBM, but those "upgrades" frequently introduce bugs (like hanging in collectives). Usually PAMID_COLLECTIVES=0 gets around this by falling back to the MPICH reference implementations (which are debugged in advance). Note that you can also turn on core dumps and then get a stack trace to figure out what caused the hang. > The results showed that PetscInitialize() cannot start the petsc > process with -n 64 --mode c16 since there is no output printed to > stdout. The .cobaltlog file shows the job started but just .output > file didn't record any output. The .error file is like: > > 2014-01-21 16:31:50.414 (INFO ) [0x40000a3bc20] > 32092:ibm.runjob.AbstractOptions: using properties file > /bgsys/local/etc/bg.properties 2014-01-21 16:31:50.416 (INFO ) > [0x40000a3bc20] 32092:ibm.runjob.AbstractOptions: max open file > descriptors: 65536 2014-01-21 16:31:50.416 (INFO ) [0x40000a3bc20] > 32092:ibm.runjob.AbstractOptions: core file limit: > 18446744073709551615 2014-01-21 16:31:50.416 (INFO ) [0x40000a3bc20] > 32092:tatu.runjob.client: scheduler job id is 154599 2014-01-21 > 16:31:50.419 (INFO ) [0x400004034e0] 32092:tatu.runjob.monitor: > monitor started 2014-01-21 16:31:50.421 (INFO ) [0x40000a3bc20] > VST-00420-11731-64:32092:ibm.runjob.client.options.Parser: set local > socket to runjob_mux from properties file 2014-01-21 16:31:53.111 > (INFO ) [0x40000a3bc20] > VST-00420-11731-64:729041:ibm.runjob.client.Job: job 729041 started > 2014-01-21 16:32:03.603 (WARN ) [0x400004034e0] > 32092:tatu.runjob.monitor: tracklib terminated with exit code 1 > 2014-01-21 16:41:09.554 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:ibm.runjob.LogSignalInfo: received signal 15 > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:ibm.runjob.LogSignalInfo: signal sent from USER > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:ibm.runjob.LogSignalInfo: sent from pid 5894 > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:ibm.runjob.LogSignalInfo: could not read > /proc/5894/exe 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:ibm.runjob.LogSignalInfo: Permission denied > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:ibm.runjob.LogSignalInfo: sent from uid 0 (root) > 2014-01-21 16:41:11.248 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:729041:ibm.runjob.client.Job: terminated by signal > 9 2014-01-21 16:41:11.248 (WARN ) [0x40000a3bc20] > VST-00420-11731-64:729041:ibm.runjob.client.Job: abnormal termination > by signal 9 from rank 720 2014-01-21 16:41:11.248 (INFO ) > [0x40000a3bc20] tatu.runjob.client: task terminated by signal 9 > 2014-01-21 16:41:11.248 (INFO ) [0x400004034e0] > 32092:tatu.runjob.monitor: monitor terminating 2014-01-21 16:41:11.250 > (INFO ) [0x40000a3bc20] tatu.runjob.client: monitor completed > > > The petsc can start with -n 16 --mode 64 and -n 1024 --mode c1. I > also replaced PetscInitialize() with MPI_Init() and the program can > start correctly with all combinations of the options. > > What is the reason cause this strange result? Thanks. > > > > -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jed at jedbrown.org Wed Jan 22 08:39:26 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 07:39:26 -0700 Subject: [petsc-users] PETSC with LBFGS solver In-Reply-To: References: Message-ID: <87r480f5cx.fsf@jedbrown.org> Bin Li writes: > Dear All, > > I want to use the LBFGS solver, but I can not find any example on how to > code it ? SNESSetFunction and run with -snes_type qn. See also http://59A2.org/files/BrownBrune-LowRankQuasiNewtonRobustJacobianLagging-2013.pdf -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From billingsjj at ornl.gov Wed Jan 22 11:18:55 2014 From: billingsjj at ornl.gov (Jay J. Billings) Date: Wed, 22 Jan 2014 12:18:55 -0500 Subject: [petsc-users] Missing header file in 54f71ec? In-Reply-To: <87ob34hdu8.fsf@jedbrown.org> References: <52DECAF1.90405@ornl.gov> <52DECBD8.5000302@ornl.gov> <87ob34hdu8.fsf@jedbrown.org> Message-ID: <52DFFD7F.9010304@ornl.gov> Jed, I just tried to rebuild it on another system and it wasn't a problem there. If it pops back up on the first machine I used then I will let you know and send you the log files. I'm having some configuration issues with that machine that may be the problem. Thanks, Jay On 01/21/2014 10:53 PM, Jed Brown wrote: > "Jay J. Billings" writes: > >> It looks like this might have been caused by the change to configure.py >> and petscsys.h in 5affe1d: >> >> https://bitbucket.org/petsc/petsc/commits/5affe1da4b5ff6ba9c99ae0e08ad5ae60b099835 > Please send configure.log and make.log. C89 and others (SVr4, 4.3BSD, > C99, POSIX.1-2001) say that string.h provides memcpy and memset. > string.h is included and this change built cleanly on all our test > machines. > > commit a3aaec0ab474bb386780073594fdc8ac7d2aa0be > Author: Jed Brown > Date: Thu Jan 9 14:40:33 2014 -0700 > > petscsys.h: find memcpy and memset in string.h > > C89 and later say that memcpy and memset are in string.h. With glibc, > memory.h merely includes string.h, and one user reported an error due to > undefined memset (which I cannot reproduce). So quit bothering with > nonstandard memory.h and just include string.h. > > Reported-by: Alexander Krimm -- Jay Jay Billings Oak Ridge National Laboratory Twitter Handle: @jayjaybillings From jed at jedbrown.org Wed Jan 22 11:42:27 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 10:42:27 -0700 Subject: [petsc-users] PETSC with LBFGS solver In-Reply-To: References: <87r480f5cx.fsf@jedbrown.org> Message-ID: <87ob33dibg.fsf@jedbrown.org> Please always use "reply-all" so that your messages go to the list. This is standard mailing list etiquette. It is important to preserve threading for people who find this discussion later and so that we do not waste our time re-answering the same questions that have already been answered in private side-conversations. You'll likely get an answer faster that way too. Bin Li writes: > Dear Jed, > > If we use SNESSetFunction with -snes_type qn, then I do not need call > > SNESSetJacobian( ), the Jacobian approximation was done in the qn.c code. No, standard BFGS does not use the Jacobian, but if you want to use "jacobian" scaling (as in the paper), you need to SNESSetJacobian. > Am I right ? Thank you ! > > > > On Wed, Jan 22, 2014 at 3:39 PM, Jed Brown wrote: > >> Bin Li writes: >> >> > Dear All, >> > >> > I want to use the LBFGS solver, but I can not find any example on how to >> > code it ? >> >> SNESSetFunction and run with -snes_type qn. >> >> See also >> http://59A2.org/files/BrownBrune-LowRankQuasiNewtonRobustJacobianLagging-2013.pdf >> > > > > -- > > Best regard. > > Bin -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From pengxwang at hotmail.com Wed Jan 22 12:04:53 2014 From: pengxwang at hotmail.com (Roc Wang) Date: Wed, 22 Jan 2014 12:04:53 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: <87d2jkh8sp.fsf@jedbrown.org> References: , <87d2jkh8sp.fsf@jedbrown.org> Message-ID: > From: jed at jedbrown.org > To: pengxwang at hotmail.com; petsc-users at mcs.anl.gov > Subject: Re: [petsc-users] Petsc cannot be initialized on vesta in some --mode options > Date: Tue, 21 Jan 2014 22:42:14 -0700 > > Roc Wang writes: > > > Hi, > > > > I am trying to run a PETSc program with 1024 MPI ranks on > > vesta.alcf.anl.gov. The original program which was debugged and > > run successfully on other clusters and on vesta with a small number > > of ranks included many PETSc functions to use KSP solver, but they > > are commented off to test the PETSc initialization. Therefore, only > > PetscInitialize() and PetscFinalize() and some output functions are > > in the program. The command to run the job is: > > > > qsub -n -t 10 --mode --env > > "F00=a:BAR=b" ./x.r > > > > The total number of ranks is 1024 with different combinations of > > and , such as -n 64 --mode c16 or -n > > 16 --mode 64. > > Please send configure.log. Also try running with PAMID_COLLECTIVES=0 in > the environment. Vesta periodically has "upgraded" versions of drivers > From IBM, but those "upgrades" frequently introduce bugs (like hanging > in collectives). Usually PAMID_COLLECTIVES=0 gets around this by > falling back to the MPICH reference implementations (which are debugged > in advance). Note that you can also turn on core dumps and then get a > stack trace to figure out what caused the hang. The configure.log is attached. I also tried running the program with command like: qsub -n -t 10 --mode --env "F00=a:BAR=b:PAMID_COLLECTIVES=0" ./x.r For 1024 as the total number of ranks, the program was able to run in c1, c16, c32, and c64 mode, but still petsc cannot be initialized in c2, c4, and c8 mode. The runtime log files for c8 mode were attached. Thanks. > > > The results showed that PetscInitialize() cannot start the petsc > > process with -n 64 --mode c16 since there is no output printed to > > stdout. The .cobaltlog file shows the job started but just .output > > file didn't record any output. The .error file is like: > > > > 2014-01-21 16:31:50.414 (INFO ) [0x40000a3bc20] > > 32092:ibm.runjob.AbstractOptions: using properties file > > /bgsys/local/etc/bg.properties 2014-01-21 16:31:50.416 (INFO ) > > [0x40000a3bc20] 32092:ibm.runjob.AbstractOptions: max open file > > descriptors: 65536 2014-01-21 16:31:50.416 (INFO ) [0x40000a3bc20] > > 32092:ibm.runjob.AbstractOptions: core file limit: > > 18446744073709551615 2014-01-21 16:31:50.416 (INFO ) [0x40000a3bc20] > > 32092:tatu.runjob.client: scheduler job id is 154599 2014-01-21 > > 16:31:50.419 (INFO ) [0x400004034e0] 32092:tatu.runjob.monitor: > > monitor started 2014-01-21 16:31:50.421 (INFO ) [0x40000a3bc20] > > VST-00420-11731-64:32092:ibm.runjob.client.options.Parser: set local > > socket to runjob_mux from properties file 2014-01-21 16:31:53.111 > > (INFO ) [0x40000a3bc20] > > VST-00420-11731-64:729041:ibm.runjob.client.Job: job 729041 started > > 2014-01-21 16:32:03.603 (WARN ) [0x400004034e0] > > 32092:tatu.runjob.monitor: tracklib terminated with exit code 1 > > 2014-01-21 16:41:09.554 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:ibm.runjob.LogSignalInfo: received signal 15 > > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:ibm.runjob.LogSignalInfo: signal sent from USER > > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:ibm.runjob.LogSignalInfo: sent from pid 5894 > > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:ibm.runjob.LogSignalInfo: could not read > > /proc/5894/exe 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:ibm.runjob.LogSignalInfo: Permission denied > > 2014-01-21 16:41:09.555 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:ibm.runjob.LogSignalInfo: sent from uid 0 (root) > > 2014-01-21 16:41:11.248 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:729041:ibm.runjob.client.Job: terminated by signal > > 9 2014-01-21 16:41:11.248 (WARN ) [0x40000a3bc20] > > VST-00420-11731-64:729041:ibm.runjob.client.Job: abnormal termination > > by signal 9 from rank 720 2014-01-21 16:41:11.248 (INFO ) > > [0x40000a3bc20] tatu.runjob.client: task terminated by signal 9 > > 2014-01-21 16:41:11.248 (INFO ) [0x400004034e0] > > 32092:tatu.runjob.monitor: monitor terminating 2014-01-21 16:41:11.250 > > (INFO ) [0x40000a3bc20] tatu.runjob.client: monitor completed > > > > > > The petsc can start with -n 16 --mode 64 and -n 1024 --mode c1. I > > also replaced PetscInitialize() with MPI_Init() and the program can > > start correctly with all combinations of the options. > > > > What is the reason cause this strange result? Thanks. > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: configure.log URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: n1024_c8_Petsc_PAMID0_154932.cobaltlog Type: application/octet-stream Size: 6044 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: n1024_c8_Petsc_PAMID0_154932.error Type: application/octet-stream Size: 67949 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: n1024_c8_Petsc_PAMID0_154932.output Type: application/octet-stream Size: 13440 bytes Desc: not available URL: From jed at jedbrown.org Wed Jan 22 12:24:21 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 11:24:21 -0700 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: References: <87d2jkh8sp.fsf@jedbrown.org> Message-ID: <87d2jjdgdm.fsf@jedbrown.org> Roc Wang writes: > The configure.log is attached. > I also tried running the program with command like: > qsub -n -t 10 --mode --env "F00=a:BAR=b:PAMID_COLLECTIVES=0" ./x.r > > For 1024 as the total number of ranks, the program was able to run in > c1, c16, c32, and c64 mode, but still petsc cannot be initialized in > c2, c4, and c8 mode. The runtime log files for c8 mode were > attached. Thanks. Hmm, appears to be this line erroring. ierr = MPI_Bcast(&len,1,MPIU_SIZE_T,0,PETSC_COMM_WORLD);CHKERRQ(ierr); But at least some processes are stuck in an earlier PetscOptionsInsertFile (which contains MPI_Bcast). This is like the problem we have seen before, but it used to go away with PAMID_COLLECTIVES=0. Can you run with -skip_petscrc? That will skip a couple MPI_Bcasts and might get it working again. Jeff, has the Vesta stack changed recently? Any reason why PAMID_COLLECTIVES=0 would not be taking effect here? I'll try to reproduce Roc's findings later today. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jeff.science at gmail.com Wed Jan 22 12:32:00 2014 From: jeff.science at gmail.com (Jeff Hammond) Date: Wed, 22 Jan 2014 12:32:00 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: <87d2jjdgdm.fsf@jedbrown.org> References: <87d2jkh8sp.fsf@jedbrown.org> <87d2jjdgdm.fsf@jedbrown.org> Message-ID: On Wed, Jan 22, 2014 at 12:24 PM, Jed Brown wrote: > Roc Wang writes: >> The configure.log is attached. >> I also tried running the program with command like: >> qsub -n -t 10 --mode --env "F00=a:BAR=b:PAMID_COLLECTIVES=0" ./x.r >> >> For 1024 as the total number of ranks, the program was able to run in >> c1, c16, c32, and c64 mode, but still petsc cannot be initialized in >> c2, c4, and c8 mode. The runtime log files for c8 mode were >> attached. Thanks. > > Hmm, appears to be this line erroring. > > ierr = MPI_Bcast(&len,1,MPIU_SIZE_T,0,PETSC_COMM_WORLD);CHKERRQ(ierr); > > But at least some processes are stuck in an earlier > PetscOptionsInsertFile (which contains MPI_Bcast). This is like the > problem we have seen before, but it used to go away with > PAMID_COLLECTIVES=0. Can you run with -skip_petscrc? That will skip a > couple MPI_Bcasts and might get it working again. I've always thought that MPI_Bcast wasn't actually the problem anyways but rather it was the POSIX calls that were breaking PETSc_Init. > Jeff, has the Vesta stack changed recently? Any reason why > PAMID_COLLECTIVES=0 would not be taking effect here? No and no. Jeff -- Jeff Hammond jeff.science at gmail.com From jed at jedbrown.org Wed Jan 22 12:38:13 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 11:38:13 -0700 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: References: <87d2jkh8sp.fsf@jedbrown.org> <87d2jjdgdm.fsf@jedbrown.org> Message-ID: <87zjmnc162.fsf@jedbrown.org> Jeff Hammond writes: > I've always thought that MPI_Bcast wasn't actually the problem anyways > but rather it was the POSIX calls that were breaking PETSc_Init. Can you elaborate? PETSc uses fopen on rank 0 (these are small user-configuration files). In this case, it made it through three of these, then got an error in a size_t MPI_Bcast. Setting PAMID_COLLECTIVES=0 used to fix this. I'll update later when I have time to reproduce. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From pengxwang at hotmail.com Wed Jan 22 12:39:36 2014 From: pengxwang at hotmail.com (Roc Wang) Date: Wed, 22 Jan 2014 12:39:36 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: <87d2jjdgdm.fsf@jedbrown.org> References: <87d2jkh8sp.fsf@jedbrown.org> , <87d2jjdgdm.fsf@jedbrown.org> Message-ID: > From: jed at jedbrown.org > To: pengxwang at hotmail.com; petsc-users at mcs.anl.gov > CC: jeff.science at gmail.com > Subject: RE: [petsc-users] Petsc cannot be initialized on vesta in some --mode options > Date: Wed, 22 Jan 2014 11:24:21 -0700 > > Roc Wang writes: > > The configure.log is attached. > > I also tried running the program with command like: > > qsub -n -t 10 --mode --env "F00=a:BAR=b:PAMID_COLLECTIVES=0" ./x.r > > > > For 1024 as the total number of ranks, the program was able to run in > > c1, c16, c32, and c64 mode, but still petsc cannot be initialized in > > c2, c4, and c8 mode. The runtime log files for c8 mode were > > attached. Thanks. > > Hmm, appears to be this line erroring. > > ierr = MPI_Bcast(&len,1,MPIU_SIZE_T,0,PETSC_COMM_WORLD);CHKERRQ(ierr); > > But at least some processes are stuck in an earlier > PetscOptionsInsertFile (which contains MPI_Bcast). This is like the > problem we have seen before, but it used to go away with > PAMID_COLLECTIVES=0. Can you run with -skip_petscrc? That will skip a > couple MPI_Bcasts and might get it working again. > > > Jeff, has the Vesta stack changed recently? Any reason why > PAMID_COLLECTIVES=0 would not be taking effect here? > > I'll try to reproduce Roc's findings later today. Yeah. The program works with -skip_petscrc. I am trying to run the full PETSc solver and take a look what will happen. I just recalled there was an error caused by calling MPI_Bcast() when I transferred the program from other machine to vesta. At that time I just replace the MPI_Bcast(). I am not sure whether it is the same problem as what we have here. But just for your information. -------------- next part -------------- An HTML attachment was scrubbed... URL: From jeff.science at gmail.com Wed Jan 22 12:50:28 2014 From: jeff.science at gmail.com (Jeff Hammond) Date: Wed, 22 Jan 2014 12:50:28 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: References: <87d2jkh8sp.fsf@jedbrown.org> <87d2jjdgdm.fsf@jedbrown.org> Message-ID: >> From: jed at jedbrown.org >> To: pengxwang at hotmail.com; petsc-users at mcs.anl.gov >> CC: jeff.science at gmail.com >> Subject: RE: [petsc-users] Petsc cannot be initialized on vesta in some >> --mode options >> Date: Wed, 22 Jan 2014 11:24:21 -0700 > >> >> Roc Wang writes: >> > The configure.log is attached. >> > I also tried running the program with command like: >> > qsub -n -t 10 --mode --env >> > "F00=a:BAR=b:PAMID_COLLECTIVES=0" ./x.r >> > >> > For 1024 as the total number of ranks, the program was able to run in >> > c1, c16, c32, and c64 mode, but still petsc cannot be initialized in >> > c2, c4, and c8 mode. The runtime log files for c8 mode were >> > attached. Thanks. >> >> Hmm, appears to be this line erroring. >> >> ierr = MPI_Bcast(&len,1,MPIU_SIZE_T,0,PETSC_COMM_WORLD);CHKERRQ(ierr); >> >> But at least some processes are stuck in an earlier >> PetscOptionsInsertFile (which contains MPI_Bcast). This is like the >> problem we have seen before, but it used to go away with >> PAMID_COLLECTIVES=0. Can you run with -skip_petscrc? That will skip a >> couple MPI_Bcasts and might get it working again. >> >> >> Jeff, has the Vesta stack changed recently? Any reason why >> PAMID_COLLECTIVES=0 would not be taking effect here? >> >> I'll try to reproduce Roc's findings later today. > > Yeah. The program works with -skip_petscrc. I am trying to run the full > PETSc solver and take a look what will happen. > > I just recalled there was an error caused by calling MPI_Bcast() when I > transferred the program from other machine to vesta. At that time I just > replace the MPI_Bcast(). I am not sure whether it is the same problem as > what we have here. But just for your information. You cannot relocate Blue Gene binaries to machines with a different driver. Vesta has a different driver than Mira/Cetus right now. Jeff -- Jeff Hammond jeff.science at gmail.com From jeff.science at gmail.com Wed Jan 22 12:51:50 2014 From: jeff.science at gmail.com (Jeff Hammond) Date: Wed, 22 Jan 2014 12:51:50 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: <87zjmnc162.fsf@jedbrown.org> References: <87d2jkh8sp.fsf@jedbrown.org> <87d2jjdgdm.fsf@jedbrown.org> <87zjmnc162.fsf@jedbrown.org> Message-ID: On Wed, Jan 22, 2014 at 12:38 PM, Jed Brown wrote: > Jeff Hammond writes: >> I've always thought that MPI_Bcast wasn't actually the problem anyways >> but rather it was the POSIX calls that were breaking PETSc_Init. > > Can you elaborate? PETSc uses fopen on rank 0 (these are small > user-configuration files). In this case, it made it through three of > these, then got an error in a size_t MPI_Bcast. Setting > PAMID_COLLECTIVES=0 used to fix this. I'll update later when I have > time to reproduce. I cannot. It is just my intuition. I have not verified it experimentally. It just seems rather unlikely that MPI_Bcast is broken given how much it is used. On the other hand, I believe that multiple people (including PETSc developers) have demonstrated that the getpwid etc. stuff is buggy on BGQ. Jeff -- Jeff Hammond jeff.science at gmail.com From pengxwang at hotmail.com Wed Jan 22 13:01:32 2014 From: pengxwang at hotmail.com (Roc Wang) Date: Wed, 22 Jan 2014 13:01:32 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: References: <87d2jkh8sp.fsf@jedbrown.org>, <87d2jjdgdm.fsf@jedbrown.org> , Message-ID: > From: jeff.science at gmail.com > Date: Wed, 22 Jan 2014 12:50:28 -0600 > Subject: Re: [petsc-users] Petsc cannot be initialized on vesta in some --mode options > To: pengxwang at hotmail.com > CC: jed at jedbrown.org; petsc-users at mcs.anl.gov > > >> From: jed at jedbrown.org > >> To: pengxwang at hotmail.com; petsc-users at mcs.anl.gov > >> CC: jeff.science at gmail.com > >> Subject: RE: [petsc-users] Petsc cannot be initialized on vesta in some > >> --mode options > >> Date: Wed, 22 Jan 2014 11:24:21 -0700 > > > >> > >> Roc Wang writes: > >> > The configure.log is attached. > >> > I also tried running the program with command like: > >> > qsub -n -t 10 --mode --env > >> > "F00=a:BAR=b:PAMID_COLLECTIVES=0" ./x.r > >> > > >> > For 1024 as the total number of ranks, the program was able to run in > >> > c1, c16, c32, and c64 mode, but still petsc cannot be initialized in > >> > c2, c4, and c8 mode. The runtime log files for c8 mode were > >> > attached. Thanks. > >> > >> Hmm, appears to be this line erroring. > >> > >> ierr = MPI_Bcast(&len,1,MPIU_SIZE_T,0,PETSC_COMM_WORLD);CHKERRQ(ierr); > >> > >> But at least some processes are stuck in an earlier > >> PetscOptionsInsertFile (which contains MPI_Bcast). This is like the > >> problem we have seen before, but it used to go away with > >> PAMID_COLLECTIVES=0. Can you run with -skip_petscrc? That will skip a > >> couple MPI_Bcasts and might get it working again. > >> > >> > >> Jeff, has the Vesta stack changed recently? Any reason why > >> PAMID_COLLECTIVES=0 would not be taking effect here? > >> > >> I'll try to reproduce Roc's findings later today. > > > > Yeah. The program works with -skip_petscrc. I am trying to run the full > > PETSc solver and take a look what will happen. > > > > I just recalled there was an error caused by calling MPI_Bcast() when I > > transferred the program from other machine to vesta. At that time I just > > replace the MPI_Bcast(). I am not sure whether it is the same problem as > > what we have here. But just for your information. > > You cannot relocate Blue Gene binaries to machines with a different > driver. Vesta has a different driver than Mira/Cetus right now. > There may be some misunderstanding. When I said "transferred the program" I meant that the code was compiled successfully on other machines (local PC and cluster on other institution) and copy the source code and compile it to vesta, not just copy the executable binary file. > Jeff > > -- > Jeff Hammond > jeff.science at gmail.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Wed Jan 22 13:37:45 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 13:37:45 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: Message-ID: Hello, Can you please help me with the problem described below. Thanks Reddy On Mon, Jan 20, 2014 at 7:14 PM, Dharmendar Reddy wrote: > Hello, > I am getting a segmentation fault when i use > SNESSetConvergenceTest from Fortran. > > I use the following: > > call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, > this,PETSC_NULL_FUNCTION, ierr) (Line 1) > > where the soubtoutine is > > subroutine SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) > implicit none > #include "finclude/petsc.h" > ! IO Variables > SNES :: snes > integer :: it > PetscReal :: xnorm > PetscReal :: gnorm > PetscReal :: fnorm > SNESConvergedReason :: reason > type(Solver_t) :: this > PetscErrorCode :: ierr > ! Local Variables > Vec :: X, dX > Vec :: F, W, G > real(WP) :: lambda > print*, 'Calling custom test',it,xnorm,fnorm,gnorm > !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) > !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) > !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) > reason = SNES_DIVERGED_FUNCTION_COUNT > end subroutine SNESConvergenceTest_snes > > Code works fine if the call at Line 1 is commented i.e, if i donot > set the convergencetest > > I have attached the stack trace when the code fails (traceFail.log) > and stack trace of the code which runs well (tracePass.log). > > > > Thanks > Reddy -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From bsmith at mcs.anl.gov Wed Jan 22 13:52:36 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 13:52:36 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: Message-ID: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> We need more information to track this down. Could you make a simple standalone code that reproduces the problem? Just creates a this, creates a SNES, sets the function, sets the test code and then crashes when runs. But since it is not crashing in the SNESConvergenceTest_snes routine I suspect it may be memory corruption. Have you run your code under valgrind? http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind Barry On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy wrote: > Hello, > I am getting a segmentation fault when i use > SNESSetConvergenceTest from Fortran. > > I use the following: > > call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, > this,PETSC_NULL_FUNCTION, ierr) (Line 1) > > where the soubtoutine is > > subroutine SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) > implicit none > #include "finclude/petsc.h" > ! IO Variables > SNES :: snes > integer :: it > PetscReal :: xnorm > PetscReal :: gnorm > PetscReal :: fnorm > SNESConvergedReason :: reason > type(Solver_t) :: this > PetscErrorCode :: ierr > ! Local Variables > Vec :: X, dX > Vec :: F, W, G > real(WP) :: lambda > print*, 'Calling custom test',it,xnorm,fnorm,gnorm > !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) > !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) > !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) > reason = SNES_DIVERGED_FUNCTION_COUNT > end subroutine SNESConvergenceTest_snes > > Code works fine if the call at Line 1 is commented i.e, if i donot > set the convergencetest > > I have attached the stack trace when the code fails (traceFail.log) > and stack trace of the code which runs well (tracePass.log). > > > > Thanks > Reddy > From knepley at gmail.com Wed Jan 22 13:53:26 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 13:53:26 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> Message-ID: On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith wrote: > > We need more information to track this down. Could you make a simple > standalone code that reproduces the problem? Just creates a this, creates a > SNES, sets the function, sets the test code and then crashes when runs. > > But since it is not crashing in the SNESConvergenceTest_snes routine I > suspect it may be memory corruption. Have you run your code under valgrind? > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind I am putting his convergence test into ex5f right now. This can be valgrinded. I will send an update when it runs. Matt > > Barry > > On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy > wrote: > > > Hello, > > I am getting a segmentation fault when i use > > SNESSetConvergenceTest from Fortran. > > > > I use the following: > > > > call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, > > this,PETSC_NULL_FUNCTION, ierr) (Line 1) > > > > where the soubtoutine is > > > > subroutine > SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) > > implicit none > > #include "finclude/petsc.h" > > ! IO Variables > > SNES :: snes > > integer :: it > > PetscReal :: xnorm > > PetscReal :: gnorm > > PetscReal :: fnorm > > SNESConvergedReason :: reason > > type(Solver_t) :: this > > PetscErrorCode :: ierr > > ! Local Variables > > Vec :: X, dX > > Vec :: F, W, G > > real(WP) :: lambda > > print*, 'Calling custom test',it,xnorm,fnorm,gnorm > > !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) > > !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) > > !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) > > reason = SNES_DIVERGED_FUNCTION_COUNT > > end subroutine SNESConvergenceTest_snes > > > > Code works fine if the call at Line 1 is commented i.e, if i donot > > set the convergencetest > > > > I have attached the stack trace when the code fails (traceFail.log) > > and stack trace of the code which runs well (tracePass.log). > > > > > > > > Thanks > > Reddy > > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From danyang.su at gmail.com Wed Jan 22 14:11:59 2014 From: danyang.su at gmail.com (Danyang Su) Date: Wed, 22 Jan 2014 12:11:59 -0800 Subject: [petsc-users] Questions on dense and sparse matrix block Message-ID: <52E0260F.8050902@gmail.com> Dear All, I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. Does anyone run into this problem before? Thanks and regards, Danyang -------------- next part -------------- %%MatrixMarket matrix coordinate real general %================================================================================= % % This ASCII file represents a sparse MxN matrix with L % nonzeros in the following Matrix Market format: % % +----------------------------------------------+ % |%%MatrixMarket matrix coordinate real general | <--- header line % |% | <--+ % |% comments | |-- 0 or more comment lines % |% | <--+ % | M N L | <--- rows, columns, entries % | I1 J1 A(I1, J1) | <--+ % | I2 J2 A(I2, J2) | | % | I3 J3 A(I3, J3) | |-- L lines % | . . . | | % | IL JL A(IL, JL) | <--+ % +----------------------------------------------+ % % Indices are 1-based, i.e. A(1,1) is the first element. % %================================================================================= 1010 1010 30100 1 1 0.48972610E+04 1 2 0.00000000E+00 1 3 0.00000000E+00 1 4 0.00000000E+00 1 5 0.00000000E+00 1 6 0.39942105E+02 1 7 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<--- header line % |% | <--+ % |% comments | |-- 0 or more comment lines % |% | <--+ % | M N L | <--- rows, columns, entries % | I1 J1 A(I1, J1) | <--+ % | I2 J2 A(I2, J2) | | % | I3 J3 A(I3, J3) | |-- L lines % | . . . | | % | IL JL A(IL, JL) | <--+ % +----------------------------------------------+ % % Indices are 1-based, i.e. A(1,1) is the first element. % %================================================================================= 1010 1010 12448 1 1 0.48972610E+04 1 6 0.39942105E+02 1 7 0.38058900E+02 1 10 0.18153565E+04 1 11 -0.35206361E-04 1 16 -0.28714265E-06 1 17 -0.27360508E-06 1 20 -0.13050579E-04 2 2 0.30832492E+04 2 4 0.31725108E+01 2 5 0.31725108E+01 2 7 -0.10568165E+02 2 10 0.12417046E+03 2 12 -0.22157848E-04 2 20 -0.89266026E-06 3 3 0.39041096E+03 3 13 -0.28066608E-05 4 4 0.67047646E+03 4 2 0.31721936E+01 4 5 0.95175325E+01 4 7 -0.32918410E+02 4 14 -0.47516275E-05 4 17 0.87268201E-08 5 5 0.95264187E+01 5 2 0.31721936E+01 5 4 0.95175325E+01 5 7 -0.31738933E+02 5 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-8.172444363259551E-008 -3.245775030622441E-007 1.671410817918572E-023 -4.511238904473879E-006 -0.333100933635656 1.278781779885479E-005 -1.075860002643647E-005 1.640922585910439E-002 -7.034779299623005E-008 -2.414605603251850E-008 -8.209124113379910E-008 -3.245972836115867E-007 -2.314284091831468E-023 -4.511238873458133E-006 -0.333100936400708 1.278741742523692E-005 -1.075874996559076E-005 1.640924447385321E-002 -7.069331747825346E-008 -2.439252848938491E-008 -8.209121355937312E-008 -3.245972976663730E-007 4.334725525655337E-023 -4.511238930543843E-006 -0.333100937970644 1.278733948844182E-005 -1.075867139732722E-005 1.640925932589955E-002 -7.069322024100353E-008 -2.439253596826105E-008 -8.209119122846005E-008 -3.245973089039781E-007 -3.781426697047465E-023 -4.511238976413339E-006 -0.333100939236334 1.278727665297279E-005 -1.075860805315832E-005 1.640927129975742E-002 -7.069314190689124E-008 -2.439254211600485E-008 -8.209117312006287E-008 -3.245973181642273E-007 8.166393188012209E-018 -4.511239013472271E-006 -0.333100940256744 1.278722599589484E-005 -1.075855698580898E-005 1.640928095316266E-002 -7.069307873192055E-008 -2.439254705141506E-008 -8.209115711877414E-008 -3.245973254746535E-007 -4.050809044659268E-017 -4.511239032758687E-006 -0.333100941059827 1.278717931814685E-005 -1.075850994347849E-005 1.640934441282033E-002 -7.069290061386267E-008 -2.439255004791285E-008 -2.494112243329667E-007 -3.479029262868195E-007 -1.137580248718141E-008 -4.472608004520357E-006 -0.333009969822696 -2.034575101356445E-005 1.655702340979619E-005 175.430613487105 3.625848640257070E-005 5.537502804194373E-007 From bsmith at mcs.anl.gov Wed Jan 22 14:29:23 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 14:29:23 -0600 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix In-Reply-To: <56D054AF2E93E044AC1D2685709D2868CA00A26069@KIT-MSX-07.kit.edu> References: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu>, <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> <56D054AF2E93E044AC1D2685709D2868CA00A26069@KIT-MSX-07.kit.edu> Message-ID: There was an error in your code; because you did not use implicit none in the main program it did not tell you CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & 1 Error: Symbol 'dmda_boundary_none' at (1) has no IMPLICIT type ex1f.F90:14.26: & DMDA_STENCIL_BOX,-1002,-3,-3,PETSC_DECIDE,PETSC_DECIDE,& 1 Error: Symbol 'dmda_stencil_box' at (1) has no IMPLICIT type I fixed the code by adding use petscdmda and the implicit none and it ran without error on those number of processes on both a MacOS and a Linux system program main ! Solves the linear system J x = f use petscksp; use petscdm; use petscdmda implicit none #include Please let me know if you still have a problem. Barry On Jan 22, 2014, at 5:15 AM, Xiao, Jianjun (IKET) wrote: > Dear Barry, > > I modified ex44f.F90, and ran the case on my 64-processors cluster. Please find the file in the attachment. > > I tried various number of processors. It seems that for number of processors: 1, 2, 3, 4, 5, 6, 7, 8, 16, 32 and 64 it works fine. For numbers such as 20, 30, 31, 60, 61 and 62, I got the error below. This time, even for MATMPIBAIJ I got error. I did not try all the numbers between 1-64. If you need more information, please let me know. > > Thank you for your help. > > Best regards > JJ > > > For MATMPISBAIJ, I got the error like this: > > [55]PETSC ERROR: [55] MatAssemblyBegin_MPISBAIJ line 483 src/mat/impls/sbaij/mpi/mpisbaij.c > [55]PETSC ERROR: [55] MatAssemblyBegin line 4865 src/mat/interface/matrix.c > [55]PETSC ERROR: [55] DMCreateMatrix_DA_3d_MPISBAIJ line 1694 src/dm/impls/da/fdda.c > [55]PETSC ERROR: [55] DMCreateMatrix_DA line 626 src/dm/impls/da/fdda.c > [55]PETSC ERROR: [55] DMCreateMatrix line 1002 src/dm/interface/dm.c > [55]PETSC ERROR: --------------------- Error Message ------------------------------------ > [55]PETSC ERROR: Signal received! > [55]PETSC ERROR: ------------------------------------------------------------------------ > [55]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > [55]PETSC ERROR: See docs/changes/index.html for recent updates. > [55]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [55]PETSC ERROR: See docs/index.html for manual pages. > [55]PETSC ERROR: ------------------------------------------------------------------------ > [55]PETSC ERROR: ./ex44f on a linux-gnu named cluster07 by xiao Wed Jan 22 11:54:32 2014 > [55]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [55]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 > [55]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [55]PETSC ERROR: ------------------------------------------------------------------------ > [55]PETSC ERROR: User provided function() line 0 in unknown file > > > For MATMPIBAIJ, I got the error like this: > > [44]PETSC ERROR: --------------------- Error Message ------------------------------------ > [44]PETSC ERROR: Argument out of range! > [44]PETSC ERROR: Trying to set preallocation for row 6678 less than first local row 6714! > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > [44]PETSC ERROR: See docs/changes/index.html for recent updates. > [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [44]PETSC ERROR: See docs/index.html for manual pages. > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 > [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 > [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: DMCreateMatrix_DA_3d_MPIBAIJ() line 1508 in src/dm/impls/da/fdda.c > [44]PETSC ERROR: DMCreateMatrix_DA() line 771 in src/dm/impls/da/fdda.c > [44]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c > [44]PETSC ERROR: --------------------- Error Message ------------------------------------ > [44]PETSC ERROR: Corrupt argument: > see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind! > [44]PETSC ERROR: Invalid Pointer to Object: Parameter # 1! > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > [44]PETSC ERROR: See docs/changes/index.html for recent updates. > [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [44]PETSC ERROR: See docs/index.html for manual pages. > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 > [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 > [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: MatDestroy() line 1029 in src/mat/interface/matrix.c > > ________________________________________ > From: Barry Smith [bsmith at mcs.anl.gov] > Sent: Monday, January 20, 2014 8:37 PM > To: Xiao, Jianjun (IKET) > Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov > Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix > > Thanks for reporting the problem. This is our error. Could you please send us the code that generates the error so we can reproduce the problem, determine the cause and fix it. > > Barry > > We need to know the exact values of imax,jmax, kmax etc to reproduce the problem. > > > > On Jan 20, 2014, at 9:33 AM, Xiao, Jianjun (IKET) wrote: > >> Dear developers, >> >> I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. >> >> CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & >> & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & >> & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& >> & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & >> & PETSC_NULL_INTEGER,da,ierr) >> >> CALL DMSetMatType(da,MATMPISBAIJ,ierr) >> CALL DMCreateMatrix(da,mat,ierr) >> >> A cluster with 64 processors was used for the testing. >> >> When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. >> >> For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. >> >> When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. >> >> >> mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ >> mpirun: [25]PETSC ERROR: Argument out of range! >> mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! >> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >> mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. >> mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. >> mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c >> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c >> mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c >> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c >> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c >> mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >> >> Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. >> >> CALL DMSetMatType(da,MATMPIBAIJ,ierr) >> CALL DMCreateMatrix(da,gfmat,ierr) >> >> Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. >> >> JJ > > From dharmareddy84 at gmail.com Wed Jan 22 14:33:57 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 14:33:57 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> Message-ID: Hello, I will also try to create a stand alone test case. Thanks Reddy On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley wrote: > On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith wrote: >> >> >> We need more information to track this down. Could you make a simple >> standalone code that reproduces the problem? Just creates a this, creates a >> SNES, sets the function, sets the test code and then crashes when runs. >> >> But since it is not crashing in the SNESConvergenceTest_snes routine I >> suspect it may be memory corruption. Have you run your code under valgrind? >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > > > I am putting his convergence test into ex5f right now. This can be > valgrinded. I will send an update when it runs. > > Matt > >> >> >> Barry >> >> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >> wrote: >> >> > Hello, >> > I am getting a segmentation fault when i use >> > SNESSetConvergenceTest from Fortran. >> > >> > I use the following: >> > >> > call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, >> > this,PETSC_NULL_FUNCTION, ierr) (Line 1) >> > >> > where the soubtoutine is >> > >> > subroutine >> > SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) >> > implicit none >> > #include "finclude/petsc.h" >> > ! IO Variables >> > SNES :: snes >> > integer :: it >> > PetscReal :: xnorm >> > PetscReal :: gnorm >> > PetscReal :: fnorm >> > SNESConvergedReason :: reason >> > type(Solver_t) :: this >> > PetscErrorCode :: ierr >> > ! Local Variables >> > Vec :: X, dX >> > Vec :: F, W, G >> > real(WP) :: lambda >> > print*, 'Calling custom test',it,xnorm,fnorm,gnorm >> > !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >> > !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) >> > !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) >> > reason = SNES_DIVERGED_FUNCTION_COUNT >> > end subroutine SNESConvergenceTest_snes >> > >> > Code works fine if the call at Line 1 is commented i.e, if i donot >> > set the convergencetest >> > >> > I have attached the stack trace when the code fails (traceFail.log) >> > and stack trace of the code which runs well (tracePass.log). >> > >> > >> > >> > Thanks >> > Reddy >> > >> > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From dharmareddy84 at gmail.com Wed Jan 22 15:31:01 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 15:31:01 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> Message-ID: Hello, I tried using the SNESSetConvergenceTest in ex5f90.F using my subroutine. Works as expected. I will try to run my code through valgrind. Thanks Reddy On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy wrote: > Hello, > I will also try to create a stand alone test case. > > Thanks > Reddy > > On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley wrote: >> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith wrote: >>> >>> >>> We need more information to track this down. Could you make a simple >>> standalone code that reproduces the problem? Just creates a this, creates a >>> SNES, sets the function, sets the test code and then crashes when runs. >>> >>> But since it is not crashing in the SNESConvergenceTest_snes routine I >>> suspect it may be memory corruption. Have you run your code under valgrind? >>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >> >> >> I am putting his convergence test into ex5f right now. This can be >> valgrinded. I will send an update when it runs. >> >> Matt >> >>> >>> >>> Barry >>> >>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >>> wrote: >>> >>> > Hello, >>> > I am getting a segmentation fault when i use >>> > SNESSetConvergenceTest from Fortran. >>> > >>> > I use the following: >>> > >>> > call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, >>> > this,PETSC_NULL_FUNCTION, ierr) (Line 1) >>> > >>> > where the soubtoutine is >>> > >>> > subroutine >>> > SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) >>> > implicit none >>> > #include "finclude/petsc.h" >>> > ! IO Variables >>> > SNES :: snes >>> > integer :: it >>> > PetscReal :: xnorm >>> > PetscReal :: gnorm >>> > PetscReal :: fnorm >>> > SNESConvergedReason :: reason >>> > type(Solver_t) :: this >>> > PetscErrorCode :: ierr >>> > ! Local Variables >>> > Vec :: X, dX >>> > Vec :: F, W, G >>> > real(WP) :: lambda >>> > print*, 'Calling custom test',it,xnorm,fnorm,gnorm >>> > !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >>> > !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) >>> > !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) >>> > reason = SNES_DIVERGED_FUNCTION_COUNT >>> > end subroutine SNESConvergenceTest_snes >>> > >>> > Code works fine if the call at Line 1 is commented i.e, if i donot >>> > set the convergencetest >>> > >>> > I have attached the stack trace when the code fails (traceFail.log) >>> > and stack trace of the code which runs well (tracePass.log). >>> > >>> > >>> > >>> > Thanks >>> > Reddy >>> > >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their experiments >> is infinitely more interesting than any results to which their experiments >> lead. >> -- Norbert Wiener > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From bsmith at mcs.anl.gov Wed Jan 22 15:42:57 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 15:42:57 -0600 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <52E0260F.8050902@gmail.com> References: <52E0260F.8050902@gmail.com> Message-ID: <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> Linear solvers based on ILU will behave very differently when extra zeros are kept in the matrix; they generally converge much faster because the ILU behaves more like an LU (especially in 1d). So first run one 1 process with dense and sparse formats and -pc_type lu; do they behave differently? (they pretty much shouldn?t). Next run the sparse format version with -ksp_monitor_true_residual and see how the solver is converging compared to the dense format version. Barry On Jan 22, 2014, at 2:11 PM, Danyang Su wrote: > Dear All, > > I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). > > I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. > > Does anyone run into this problem before? > > Thanks and regards, > > Danyang > From dharmareddy84 at gmail.com Wed Jan 22 16:02:50 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 16:02:50 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> Message-ID: Hello, The code works fine if i run with valgrind --leak-check=yes exename args it fails if i run valgrind exename args Any suggestions on what to look for my code? Thanks Reddy On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy wrote: > Hello, > I tried using the SNESSetConvergenceTest in ex5f90.F using my > subroutine. Works as expected. I will try to run my code through > valgrind. > > Thanks > Reddy > > On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy > wrote: >> Hello, >> I will also try to create a stand alone test case. >> >> Thanks >> Reddy >> >> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley wrote: >>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith wrote: >>>> >>>> >>>> We need more information to track this down. Could you make a simple >>>> standalone code that reproduces the problem? Just creates a this, creates a >>>> SNES, sets the function, sets the test code and then crashes when runs. >>>> >>>> But since it is not crashing in the SNESConvergenceTest_snes routine I >>>> suspect it may be memory corruption. Have you run your code under valgrind? >>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >>> >>> >>> I am putting his convergence test into ex5f right now. This can be >>> valgrinded. I will send an update when it runs. >>> >>> Matt >>> >>>> >>>> >>>> Barry >>>> >>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >>>> wrote: >>>> >>>> > Hello, >>>> > I am getting a segmentation fault when i use >>>> > SNESSetConvergenceTest from Fortran. >>>> > >>>> > I use the following: >>>> > >>>> > call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, >>>> > this,PETSC_NULL_FUNCTION, ierr) (Line 1) >>>> > >>>> > where the soubtoutine is >>>> > >>>> > subroutine >>>> > SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) >>>> > implicit none >>>> > #include "finclude/petsc.h" >>>> > ! IO Variables >>>> > SNES :: snes >>>> > integer :: it >>>> > PetscReal :: xnorm >>>> > PetscReal :: gnorm >>>> > PetscReal :: fnorm >>>> > SNESConvergedReason :: reason >>>> > type(Solver_t) :: this >>>> > PetscErrorCode :: ierr >>>> > ! Local Variables >>>> > Vec :: X, dX >>>> > Vec :: F, W, G >>>> > real(WP) :: lambda >>>> > print*, 'Calling custom test',it,xnorm,fnorm,gnorm >>>> > !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >>>> > !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) >>>> > !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) >>>> > reason = SNES_DIVERGED_FUNCTION_COUNT >>>> > end subroutine SNESConvergenceTest_snes >>>> > >>>> > Code works fine if the call at Line 1 is commented i.e, if i donot >>>> > set the convergencetest >>>> > >>>> > I have attached the stack trace when the code fails (traceFail.log) >>>> > and stack trace of the code which runs well (tracePass.log). >>>> > >>>> > >>>> > >>>> > Thanks >>>> > Reddy >>>> > >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their experiments >>> is infinitely more interesting than any results to which their experiments >>> lead. >>> -- Norbert Wiener >> >> >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> Graduate Student >> Microelectronics Research center, >> University of Texas at Austin, >> 10100 Burnet Road, Bldg. 160 >> MER 2.608F, TX 78758-4445 >> e-mail: dharmareddy84 at gmail.com >> Phone: +1-512-350-9082 >> United States of America. >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From knepley at gmail.com Wed Jan 22 16:04:44 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 16:04:44 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> Message-ID: On Wed, Jan 22, 2014 at 4:02 PM, Dharmendar Reddy wrote: > Hello, > The code works fine if i run with valgrind --leak-check=yes > exename args > it fails if i run valgrind exename args > What is the error msg? Thanks, Matt > Any suggestions on what to look for my code? > > Thanks > Reddy > > On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy > wrote: > > Hello, > > I tried using the SNESSetConvergenceTest in ex5f90.F using my > > subroutine. Works as expected. I will try to run my code through > > valgrind. > > > > Thanks > > Reddy > > > > On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy > > wrote: > >> Hello, > >> I will also try to create a stand alone test case. > >> > >> Thanks > >> Reddy > >> > >> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley > wrote: > >>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith > wrote: > >>>> > >>>> > >>>> We need more information to track this down. Could you make a simple > >>>> standalone code that reproduces the problem? Just creates a this, > creates a > >>>> SNES, sets the function, sets the test code and then crashes when > runs. > >>>> > >>>> But since it is not crashing in the SNESConvergenceTest_snes > routine I > >>>> suspect it may be memory corruption. Have you run your code under > valgrind? > >>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > >>> > >>> > >>> I am putting his convergence test into ex5f right now. This can be > >>> valgrinded. I will send an update when it runs. > >>> > >>> Matt > >>> > >>>> > >>>> > >>>> Barry > >>>> > >>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > >>>> wrote: > >>>> > >>>> > Hello, > >>>> > I am getting a segmentation fault when i use > >>>> > SNESSetConvergenceTest from Fortran. > >>>> > > >>>> > I use the following: > >>>> > > >>>> > call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, > >>>> > this,PETSC_NULL_FUNCTION, ierr) (Line 1) > >>>> > > >>>> > where the soubtoutine is > >>>> > > >>>> > subroutine > >>>> > SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, > ierr) > >>>> > implicit none > >>>> > #include "finclude/petsc.h" > >>>> > ! IO Variables > >>>> > SNES :: snes > >>>> > integer :: it > >>>> > PetscReal :: xnorm > >>>> > PetscReal :: gnorm > >>>> > PetscReal :: fnorm > >>>> > SNESConvergedReason :: reason > >>>> > type(Solver_t) :: this > >>>> > PetscErrorCode :: ierr > >>>> > ! Local Variables > >>>> > Vec :: X, dX > >>>> > Vec :: F, W, G > >>>> > real(WP) :: lambda > >>>> > print*, 'Calling custom test',it,xnorm,fnorm,gnorm > >>>> > !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) > >>>> > !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) > >>>> > !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, > ierr) > >>>> > reason = SNES_DIVERGED_FUNCTION_COUNT > >>>> > end subroutine SNESConvergenceTest_snes > >>>> > > >>>> > Code works fine if the call at Line 1 is commented i.e, if i donot > >>>> > set the convergencetest > >>>> > > >>>> > I have attached the stack trace when the code fails (traceFail.log) > >>>> > and stack trace of the code which runs well (tracePass.log). > >>>> > > >>>> > > >>>> > > >>>> > Thanks > >>>> > Reddy > >>>> > > >>>> > >>> > >>> > >>> > >>> -- > >>> What most experimenters take for granted before they begin their > experiments > >>> is infinitely more interesting than any results to which their > experiments > >>> lead. > >>> -- Norbert Wiener > >> > >> > >> > >> -- > >> ----------------------------------------------------- > >> Dharmendar Reddy Palle > >> Graduate Student > >> Microelectronics Research center, > >> University of Texas at Austin, > >> 10100 Burnet Road, Bldg. 160 > >> MER 2.608F, TX 78758-4445 > >> e-mail: dharmareddy84 at gmail.com > >> Phone: +1-512-350-9082 > >> United States of America. > >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > > > > > -- > > ----------------------------------------------------- > > Dharmendar Reddy Palle > > Graduate Student > > Microelectronics Research center, > > University of Texas at Austin, > > 10100 Burnet Road, Bldg. 160 > > MER 2.608F, TX 78758-4445 > > e-mail: dharmareddy84 at gmail.com > > Phone: +1-512-350-9082 > > United States of America. > > Homepage: https://webspace.utexas.edu/~dpr342 > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Jan 22 16:14:04 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 16:14:04 -0600 Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN In-Reply-To: References: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> Message-ID: Jed and Matt, This SF stuff is broken! Please fix. PetscErrorCode DMLocalToGlobalBegin(DM dm,Vec l,InsertMode mode,Vec g) { PetscSF sf; PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(dm,DM_CLASSID,1); ierr = DMGetDefaultSF(dm, &sf);CHKERRQ(ierr); if (sf) { MPI_Op op; PetscScalar *lArray, *gArray; switch (mode) { case INSERT_VALUES: case INSERT_ALL_VALUES: op = MPIU_REPLACE; break; case ADD_VALUES: case ADD_ALL_VALUES: op = MPI_SUM; break; default: SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %D", mode); } ierr = VecGetArray(l, &lArray);CHKERRQ(ierr); ierr = VecGetArray(g, &gArray);CHKERRQ(ierr); ierr = PetscSFReduceBegin(sf, MPIU_SCALAR, lArray, gArray, op);CHKERRQ(ierr); ierr = VecRestoreArray(l, &lArray);CHKERRQ(ierr); ierr = VecRestoreArray(g, &gArray);CHKERRQ(ierr); But the PetscSF stuff has no way of managing multiple begin/begin in flight and no error checking to warn people against it. Likely the fix belongs in maint Barry On Jan 21, 2014, at 10:21 PM, Dharmendar Reddy wrote: > Thanks. I assumed it to work. Can you add a note to man pages ? It > took me a lot of iterations to identify the incorrect usage as the > cause. > > I will use CHKERRQ. > > > Thanks > Reddy > > On Tue, Jan 21, 2014 at 10:04 PM, Barry Smith wrote: >> >> On Jan 21, 2014, at 9:52 PM, Dharmendar Reddy wrote: >> >>> Hello, >>> I am trying to understand the usage rule for DMLocalToGlobalBegin/End. >>> >>> I have a sequence of calls like this: >>> >>> call DMLocalToGlobalBegin(dm, localLB, INSERT_VALUES, LB, ierr) ----- (1) >>> >>> call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ------ (2) >>> >>> call DMLocalToGlobalEnd(dm, localLB, INSERT_VALUES, LB, ierr) ------- (3) >>> >>> call DMLocalToGlobalEnd(dm, localUB, INSERT_VALUES, UB, ierr) --------(4) >>> >>> >>> call SNESVISetVariableBounds(snes,LB,UB, ierr) >>> >>> >>> SNES fails to run. I get function norm zero right in the first call >>> and simulation ends. >>> >>> >>> If i change the order of DM calls above to >>> >>> 1,3,2,4 then code works as expected >>> >>> >>> Does that mean the End call should occur immediately after Begin call ? >> >> Currently they do need to be called in that order. Note that if you checked the ierr after (2) it would have indicated an error condition. I am surprised that PETSc didn?t print an error message ?Scatter ctx already in use?. Note in FORTRAN you can do a lazy check of ierr with >> >> call DMLocalToGlobalBegin(dm, localUB, INSERT_VALUES, UB, ierr) ; CHKERRQ(ierr) >> >> so it does not make the Fortran code particularly ugly just put the CHKERRQ(ierr) on the same line as the code >> >> >> Barry >> >> >>> >>> >>> Thanks >>> Reddy >> > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 From daveliu at mit.edu Wed Jan 22 16:17:52 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 22 Jan 2014 17:17:52 -0500 Subject: [petsc-users] "--with-cxx=CC" option for ./configure? In-Reply-To: <9D494451-FB3B-4306-8A4E-880C0B0E8391@mcs.anl.gov> References: <9D494451-FB3B-4306-8A4E-880C0B0E8391@mcs.anl.gov> Message-ID: Cool that works. I was wondering is there an easy way to do this, however? Right now I am just copy and pasting the huge block of text that make generates, and then replacing the C compiler with the C++ compiler. To the best of my understanding, the makefile rule to make an executable called "codeout" is codeout: code.o ${CLINKER} blah blah $< $@ blah blah I find that if I redefine CLINKER=, then the make step going from code.o to the executable works, but the step going from code.c to code.o still uses the original value of CLINKER. best, David On Wed, Jan 22, 2014 at 10:28 AM, Barry Smith wrote: > > On Jan 22, 2014, at 9:17 AM, David Liu wrote: > > > Hi, > > > > I?m trying to run a solver code I wrote in C++ on the Kraken > supercomputer. Apparently Kraken already has a pre-built version of Petsc > that is optimized for their Cray architecture. So I try compiling my code, > and as expected, get an error message saying that ?? not found, > which I?m guessing is because Petsc wasn?t configured with > ?-with-c-language=cxx?. Fair enough. > > You can still use the C++ compiler to compiler YOUR code even without > PETSc being built with -with-c-language=cxx > > > > > However, at the end of the error message, it gives me the list of things > it *was* configured with, and I see the flags ?--with-cc=cc? and > ?--with-cxx=CC?. Does anyone know what that second flag means? > > That is the C++ compiler. > > So in this case just use CC to compile your code. (note Cray > auto-magically has the compiler know all about the MPI includes etc). > > Barry > > > > > > > best, > > David > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Wed Jan 22 16:23:49 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Wed, 22 Jan 2014 16:23:49 -0600 Subject: [petsc-users] "--with-cxx=CC" option for ./configure? In-Reply-To: References: <9D494451-FB3B-4306-8A4E-880C0B0E8391@mcs.anl.gov> Message-ID: You can use the petsc makefile for this and then add the following lines after "include ${PETSC_DIR}/conf/rules" line.. PCC=${CXX} PCC_LINKER=${CXX} Now your code will be compiled and linked in with the c++ compiler [assuming petsc is configured with a c++ compiler] Satish On Wed, 22 Jan 2014, David Liu wrote: > Cool that works. > > I was wondering is there an easy way to do this, however? Right now I am > just copy and pasting the huge block of text that make generates, and then > replacing the C compiler with the C++ compiler. > > To the best of my understanding, the makefile rule to make an executable > called "codeout" is > > codeout: code.o > ${CLINKER} blah blah $< $@ blah blah > > I find that if I redefine CLINKER=, then the make step going > from code.o to the executable works, but the step going from code.c to > code.o still uses the original value of CLINKER. > > best, > David > > > > > On Wed, Jan 22, 2014 at 10:28 AM, Barry Smith wrote: > > > > > On Jan 22, 2014, at 9:17 AM, David Liu wrote: > > > > > Hi, > > > > > > I?m trying to run a solver code I wrote in C++ on the Kraken > > supercomputer. Apparently Kraken already has a pre-built version of Petsc > > that is optimized for their Cray architecture. So I try compiling my code, > > and as expected, get an error message saying that ?? not found, > > which I?m guessing is because Petsc wasn?t configured with > > ?-with-c-language=cxx?. Fair enough. > > > > You can still use the C++ compiler to compiler YOUR code even without > > PETSc being built with -with-c-language=cxx > > > > > > > > However, at the end of the error message, it gives me the list of things > > it *was* configured with, and I see the flags ?--with-cc=cc? and > > ?--with-cxx=CC?. Does anyone know what that second flag means? > > > > That is the C++ compiler. > > > > So in this case just use CC to compile your code. (note Cray > > auto-magically has the compiler know all about the MPI includes etc). > > > > Barry > > > > > > > > > > > > best, > > > David > > > > > From jed at jedbrown.org Wed Jan 22 16:24:30 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 15:24:30 -0700 Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN In-Reply-To: References: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> Message-ID: <87ha8vac4h.fsf@jedbrown.org> Barry Smith writes: > Jed and Matt, > > This SF stuff is broken! Please fix. > > PetscErrorCode DMLocalToGlobalBegin(DM dm,Vec l,InsertMode mode,Vec g) > { > PetscSF sf; > PetscErrorCode ierr; > > PetscFunctionBegin; > PetscValidHeaderSpecific(dm,DM_CLASSID,1); > ierr = DMGetDefaultSF(dm, &sf);CHKERRQ(ierr); > if (sf) { > MPI_Op op; > PetscScalar *lArray, *gArray; > > switch (mode) { > case INSERT_VALUES: > case INSERT_ALL_VALUES: > op = MPIU_REPLACE; break; > case ADD_VALUES: > case ADD_ALL_VALUES: > op = MPI_SUM; break; > default: > SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %D", mode); > } > ierr = VecGetArray(l, &lArray);CHKERRQ(ierr); > ierr = VecGetArray(g, &gArray);CHKERRQ(ierr); > ierr = PetscSFReduceBegin(sf, MPIU_SCALAR, lArray, gArray, op);CHKERRQ(ierr); > ierr = VecRestoreArray(l, &lArray);CHKERRQ(ierr); > ierr = VecRestoreArray(g, &gArray);CHKERRQ(ierr); > > But the PetscSF stuff has no way of managing multiple begin/begin > in flight and no error checking to warn people against it. SF holds a linked list of in-flight operations (indexed by the rootdata pointer), see PetscSFBasicGetPackInUse. However, I don't see a specific test so it could have broken. Note that VecScatter does not support this at all. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Wed Jan 22 16:30:58 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 16:30:58 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> Message-ID: <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> The thing to use in valgrind is -q --tool=memcheck This checks for corrupted and illegally accessed memory, uninitialized memory etc It shows the exact lines that memory is used incorrectly so you can fix your code. Barry On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy wrote: > Hello, > The code works fine if i run with valgrind --leak-check=yes exename args > it fails if i run valgrind exename args > > Any suggestions on what to look for my code? > > Thanks > Reddy > > On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy > wrote: >> Hello, >> I tried using the SNESSetConvergenceTest in ex5f90.F using my >> subroutine. Works as expected. I will try to run my code through >> valgrind. >> >> Thanks >> Reddy >> >> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy >> wrote: >>> Hello, >>> I will also try to create a stand alone test case. >>> >>> Thanks >>> Reddy >>> >>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley wrote: >>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith wrote: >>>>> >>>>> >>>>> We need more information to track this down. Could you make a simple >>>>> standalone code that reproduces the problem? Just creates a this, creates a >>>>> SNES, sets the function, sets the test code and then crashes when runs. >>>>> >>>>> But since it is not crashing in the SNESConvergenceTest_snes routine I >>>>> suspect it may be memory corruption. Have you run your code under valgrind? >>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >>>> >>>> >>>> I am putting his convergence test into ex5f right now. This can be >>>> valgrinded. I will send an update when it runs. >>>> >>>> Matt >>>> >>>>> >>>>> >>>>> Barry >>>>> >>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >>>>> wrote: >>>>> >>>>>> Hello, >>>>>> I am getting a segmentation fault when i use >>>>>> SNESSetConvergenceTest from Fortran. >>>>>> >>>>>> I use the following: >>>>>> >>>>>> call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, >>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) >>>>>> >>>>>> where the soubtoutine is >>>>>> >>>>>> subroutine >>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) >>>>>> implicit none >>>>>> #include "finclude/petsc.h" >>>>>> ! IO Variables >>>>>> SNES :: snes >>>>>> integer :: it >>>>>> PetscReal :: xnorm >>>>>> PetscReal :: gnorm >>>>>> PetscReal :: fnorm >>>>>> SNESConvergedReason :: reason >>>>>> type(Solver_t) :: this >>>>>> PetscErrorCode :: ierr >>>>>> ! Local Variables >>>>>> Vec :: X, dX >>>>>> Vec :: F, W, G >>>>>> real(WP) :: lambda >>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm >>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) >>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) >>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT >>>>>> end subroutine SNESConvergenceTest_snes >>>>>> >>>>>> Code works fine if the call at Line 1 is commented i.e, if i donot >>>>>> set the convergencetest >>>>>> >>>>>> I have attached the stack trace when the code fails (traceFail.log) >>>>>> and stack trace of the code which runs well (tracePass.log). >>>>>> >>>>>> >>>>>> >>>>>> Thanks >>>>>> Reddy >>>>>> >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their experiments >>>> is infinitely more interesting than any results to which their experiments >>>> lead. >>>> -- Norbert Wiener >>> >>> >>> >>> -- >>> ----------------------------------------------------- >>> Dharmendar Reddy Palle >>> Graduate Student >>> Microelectronics Research center, >>> University of Texas at Austin, >>> 10100 Burnet Road, Bldg. 160 >>> MER 2.608F, TX 78758-4445 >>> e-mail: dharmareddy84 at gmail.com >>> Phone: +1-512-350-9082 >>> United States of America. >>> Homepage: https://webspace.utexas.edu/~dpr342 >> >> >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> Graduate Student >> Microelectronics Research center, >> University of Texas at Austin, >> 10100 Burnet Road, Bldg. 160 >> MER 2.608F, TX 78758-4445 >> e-mail: dharmareddy84 at gmail.com >> Phone: +1-512-350-9082 >> United States of America. >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 From bsmith at mcs.anl.gov Wed Jan 22 16:35:11 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 16:35:11 -0600 Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN In-Reply-To: <87ha8vac4h.fsf@jedbrown.org> References: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> <87ha8vac4h.fsf@jedbrown.org> Message-ID: <223E08D0-F6AF-4D26-9FA5-062B2CDA5F68@mcs.anl.gov> On Jan 22, 2014, at 4:24 PM, Jed Brown wrote: > Barry Smith writes: > >> Jed and Matt, >> >> >> But the PetscSF stuff has no way of managing multiple begin/begin >> in flight and no error checking to warn people against it. > > SF holds a linked list of in-flight operations (indexed by the rootdata > pointer), see PetscSFBasicGetPackInUse. Ok, well the damn code is so convoluted it is hard to see that it is even trying to do things right for multiple independent calls. You?ll have to pry out of Dhamendar his test case that fails. It must be using PetscSF because it cannot be using VecScatter or it would have ended with the nice error message. > However, I don't see a specific > test so it could have broken. Note that VecScatter does not support > this at all. Nope, it provides a nice error message and stops. Barry From jed at jedbrown.org Wed Jan 22 16:39:54 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 15:39:54 -0700 Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN In-Reply-To: <223E08D0-F6AF-4D26-9FA5-062B2CDA5F68@mcs.anl.gov> References: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> <87ha8vac4h.fsf@jedbrown.org> <223E08D0-F6AF-4D26-9FA5-062B2CDA5F68@mcs.anl.gov> Message-ID: <87eh3zabet.fsf@jedbrown.org> Barry Smith writes: > Ok, well the damn code is so convoluted it is hard to see that it > is even trying to do things right for multiple independent calls. How would you change this to make it less convoluted? static PetscErrorCode PetscSFReduceEnd_Basic(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) { void (*UnpackOp)(PetscInt,const PetscInt*,void*,const void*); PetscErrorCode ierr; PetscSFBasicPack link; PetscInt i,nrootranks; const PetscInt *rootoffset,*rootloc; PetscFunctionBegin; ierr = PetscSFBasicGetPackInUse(sf,unit,rootdata,PETSC_OWN_POINTER,&link);CHKERRQ(ierr); /* This implementation could be changed to unpack as receives arrive, at the cost of non-determinism */ ierr = PetscSFBasicPackWaitall(sf,link);CHKERRQ(ierr); ierr = PetscSFBasicGetRootInfo(sf,&nrootranks,NULL,&rootoffset,&rootloc);CHKERRQ(ierr); ierr = PetscSFBasicPackGetUnpackOp(sf,link,op,&UnpackOp);CHKERRQ(ierr); for (i=0; iroot+rootoffset[i]*link->unitbytes; (*UnpackOp)(n,rootloc+rootoffset[i],rootdata,packstart); } ierr = PetscSFBasicReclaimPack(sf,&link);CHKERRQ(ierr); PetscFunctionReturn(0); } > You?ll have to pry out of Dhamendar his test case that fails. That would be useful. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jed at jedbrown.org Wed Jan 22 16:41:23 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 15:41:23 -0700 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: <87bnz3abcc.fsf@jedbrown.org> Barry Smith writes: > The thing to use in valgrind is -q --tool=memcheck memcheck is the default. >> The code works fine if i run with valgrind --leak-check=yes exename args >> it fails if i run valgrind exename args This shouldn't happen. What version of valgrind? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From dharmareddy84 at gmail.com Wed Jan 22 16:50:01 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 16:50:01 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: I take back my earlier email... I see the error irrespective of valgrind options. I did a clean compile to test it few times now. See the attached valgrind.log Now the difference between, ex5f90.F and my code is that i use DMSNESSetFunctionLocal in the case where the code fails. I have also attached the solver.F90 which wraps the calls to snes, Now the solver has to interface (1) for equations which are handled with a DM and (2) for equation with out DM , here i use SNESSetFunction, and this part of the code runs fine with the test case in the code which can be compiled with -DTestSolver and standard petsc makefile The case with DM is linked deeply into my code, i am trying to get to a test case for that. thanks Reddy On Wed, Jan 22, 2014 at 4:30 PM, Barry Smith wrote: > > The thing to use in valgrind is -q --tool=memcheck > > This checks for corrupted and illegally accessed memory, uninitialized memory etc It shows the exact lines that memory is used incorrectly so you can fix your code. > > Barry > > On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy wrote: > >> Hello, >> The code works fine if i run with valgrind --leak-check=yes exename args >> it fails if i run valgrind exename args >> >> Any suggestions on what to look for my code? >> >> Thanks >> Reddy >> >> On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy >> wrote: >>> Hello, >>> I tried using the SNESSetConvergenceTest in ex5f90.F using my >>> subroutine. Works as expected. I will try to run my code through >>> valgrind. >>> >>> Thanks >>> Reddy >>> >>> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy >>> wrote: >>>> Hello, >>>> I will also try to create a stand alone test case. >>>> >>>> Thanks >>>> Reddy >>>> >>>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley wrote: >>>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith wrote: >>>>>> >>>>>> >>>>>> We need more information to track this down. Could you make a simple >>>>>> standalone code that reproduces the problem? Just creates a this, creates a >>>>>> SNES, sets the function, sets the test code and then crashes when runs. >>>>>> >>>>>> But since it is not crashing in the SNESConvergenceTest_snes routine I >>>>>> suspect it may be memory corruption. Have you run your code under valgrind? >>>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >>>>> >>>>> >>>>> I am putting his convergence test into ex5f right now. This can be >>>>> valgrinded. I will send an update when it runs. >>>>> >>>>> Matt >>>>> >>>>>> >>>>>> >>>>>> Barry >>>>>> >>>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >>>>>> wrote: >>>>>> >>>>>>> Hello, >>>>>>> I am getting a segmentation fault when i use >>>>>>> SNESSetConvergenceTest from Fortran. >>>>>>> >>>>>>> I use the following: >>>>>>> >>>>>>> call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, >>>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) >>>>>>> >>>>>>> where the soubtoutine is >>>>>>> >>>>>>> subroutine >>>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, ierr) >>>>>>> implicit none >>>>>>> #include "finclude/petsc.h" >>>>>>> ! IO Variables >>>>>>> SNES :: snes >>>>>>> integer :: it >>>>>>> PetscReal :: xnorm >>>>>>> PetscReal :: gnorm >>>>>>> PetscReal :: fnorm >>>>>>> SNESConvergedReason :: reason >>>>>>> type(Solver_t) :: this >>>>>>> PetscErrorCode :: ierr >>>>>>> ! Local Variables >>>>>>> Vec :: X, dX >>>>>>> Vec :: F, W, G >>>>>>> real(WP) :: lambda >>>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm >>>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >>>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) >>>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, ierr) >>>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT >>>>>>> end subroutine SNESConvergenceTest_snes >>>>>>> >>>>>>> Code works fine if the call at Line 1 is commented i.e, if i donot >>>>>>> set the convergencetest >>>>>>> >>>>>>> I have attached the stack trace when the code fails (traceFail.log) >>>>>>> and stack trace of the code which runs well (tracePass.log). >>>>>>> >>>>>>> >>>>>>> >>>>>>> Thanks >>>>>>> Reddy >>>>>>> >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> What most experimenters take for granted before they begin their experiments >>>>> is infinitely more interesting than any results to which their experiments >>>>> lead. >>>>> -- Norbert Wiener >>>> >>>> >>>> >>>> -- >>>> ----------------------------------------------------- >>>> Dharmendar Reddy Palle >>>> Graduate Student >>>> Microelectronics Research center, >>>> University of Texas at Austin, >>>> 10100 Burnet Road, Bldg. 160 >>>> MER 2.608F, TX 78758-4445 >>>> e-mail: dharmareddy84 at gmail.com >>>> Phone: +1-512-350-9082 >>>> United States of America. >>>> Homepage: https://webspace.utexas.edu/~dpr342 >>> >>> >>> >>> -- >>> ----------------------------------------------------- >>> Dharmendar Reddy Palle >>> Graduate Student >>> Microelectronics Research center, >>> University of Texas at Austin, >>> 10100 Burnet Road, Bldg. 160 >>> MER 2.608F, TX 78758-4445 >>> e-mail: dharmareddy84 at gmail.com >>> Phone: +1-512-350-9082 >>> United States of America. >>> Homepage: https://webspace.utexas.edu/~dpr342 >> >> >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> Graduate Student >> Microelectronics Research center, >> University of Texas at Austin, >> 10100 Burnet Road, Bldg. 160 >> MER 2.608F, TX 78758-4445 >> e-mail: dharmareddy84 at gmail.com >> Phone: +1-512-350-9082 >> United States of America. >> Homepage: https://webspace.utexas.edu/~dpr342 > -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. 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Name: valgrind.log Type: application/octet-stream Size: 932728 bytes Desc: not available URL: From danyang.su at gmail.com Wed Jan 22 17:05:12 2014 From: danyang.su at gmail.com (Danyang Su) Date: Wed, 22 Jan 2014 15:05:12 -0800 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> References: <52E0260F.8050902@gmail.com> <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> Message-ID: <52E04EA8.9080603@gmail.com> On 22/01/2014 1:42 PM, Barry Smith wrote: > Linear solvers based on ILU will behave very differently when extra zeros are kept in the matrix; they generally converge much faster because the ILU behaves more like an LU (especially in 1d). So first run one 1 process with dense and sparse formats and -pc_type lu; do they behave differently? (they pretty much shouldn?t). It does not behave differently with the option '-pc_type lu'. > > Next run the sparse format version with -ksp_monitor_true_residual and see how the solver is converging compared to the dense format version. The converging is quite different. ---Sparse format 0 KSP preconditioned resid norm 5.242977405897e-004 true resid norm 3.927123490361e-006 ||r(i)||/||b|| 1.000000000000e+000 1 KSP preconditioned resid norm 6.118580743238e-006 true resid norm 2.917502282301e-008 ||r(i)||/||b|| 7.429107562985e-003 2 KSP preconditioned resid norm 9.271130393116e-007 true resid norm 9.649272009380e-009 ||r(i)||/||b|| 2.457083927476e-003 3 KSP preconditioned resid norm 5.812641606714e-009 true resid norm 4.073757311146e-011 ||r(i)||/||b|| 1.037338734355e-005 4 KSP preconditioned resid norm 1.992914862465e-010 true resid norm 1.261636843933e-012 ||r(i)||/||b|| 3.212623303112e-007 5 KSP preconditioned resid norm 1.422122839379e-012 true resid norm 2.393761421284e-014 ||r(i)||/||b|| 6.095457469466e-009 ---Dense format 0 KSP preconditioned resid norm 2.948306125658e+000 true resid norm 2.436662454678e-004 ||r(i)||/||b|| 1.000000000000e+000 1 KSP preconditioned resid norm 9.798852520841e-015 true resid norm 1.267168968393e-018 ||r(i)||/||b|| 5.200428832315e-015 The convergence seems difficult for the sparse format and the number of outer newton iteration is usually much larger than dense format. So the time step cannot increase due to this. Thanks, Danyang > > Barry > > On Jan 22, 2014, at 2:11 PM, Danyang Su wrote: > >> Dear All, >> >> I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). >> >> I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. >> >> Does anyone run into this problem before? >> >> Thanks and regards, >> >> Danyang >> From jianjun.xiao at kit.edu Wed Jan 22 17:04:46 2014 From: jianjun.xiao at kit.edu (Xiao, Jianjun (IKET)) Date: Thu, 23 Jan 2014 00:04:46 +0100 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix In-Reply-To: References: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu>, <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> <56D054AF2E93E044AC1D2685709D2868CA00A26069@KIT-MSX-07.kit.edu>, Message-ID: <56D054AF2E93E044AC1D2685709D2868CA00A2606B@KIT-MSX-07.kit.edu> I changed the code as you suggested, and I updated the nightly tarball. Unfortunately, I still got the error below with number of processors, say 22, 55, 61, 62 ... on the Linux cluster. And I think the number might be different on your machine. Could you please try other numbers, say 50~63? It seems the errors could be from my side. Could you please give me some idea on how to debug such a problem? Thank you. [60]PETSC ERROR: ------------------------------------------------------------------------ [60]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [60]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [60]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[60]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [60]PETSC ERROR: likely location of problem given in stack below [60]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [60]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [60]PETSC ERROR: INSTEAD the line number of the start of the function [60]PETSC ERROR: is given. [60]PETSC ERROR: [60] MatAssemblyBegin_MPISBAIJ line 483 /home/xiao/Local/petsc-dev-debug/src/mat/impls/sbaij/mpi/mpisbaij.c [60]PETSC ERROR: [60] MatAssemblyBegin line 4854 /home/xiao/Local/petsc-dev-debug/src/mat/interface/matrix.c [60]PETSC ERROR: [60] DMCreateMatrix_DA_3d_MPISBAIJ line 1679 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c [60]PETSC ERROR: [60] DMCreateMatrix_DA line 625 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c [60]PETSC ERROR: [60] DMCreateMatrix line 961 /home/xiao/Local/petsc-dev-debug/src/dm/interface/dm.c [60]PETSC ERROR: --------------------- Error Message ------------------------------------ [60]PETSC ERROR: Signal received! [60]PETSC ERROR: ------------------------------------------------------------------------ [60]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2332-g54f71ec GIT Date: 2014-01-20 14:12:11 -0700 [60]PETSC ERROR: See docs/changes/index.html for recent updates. [60]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [60]PETSC ERROR: See docs/index.html for manual pages. [60]PETSC ERROR: ------------------------------------------------------------------------ [60]PETSC ERROR: ./ex44f on a linux-gnu named cluster08 by xiao Wed Jan 22 23:51:36 2014 [60]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib [60]PETSC ERROR: Configure run at Wed Jan 22 23:45:50 2014 [60]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 [60]PETSC ERROR: ------------------------------------------------------------------------ JJ _________ _______________________________ From: Barry Smith [bsmith at mcs.anl.gov] Sent: Wednesday, January 22, 2014 9:29 PM To: Xiao, Jianjun (IKET) Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix There was an error in your code; because you did not use implicit none in the main program it did not tell you CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & 1 Error: Symbol 'dmda_boundary_none' at (1) has no IMPLICIT type ex1f.F90:14.26: & DMDA_STENCIL_BOX,-1002,-3,-3,PETSC_DECIDE,PETSC_DECIDE,& 1 Error: Symbol 'dmda_stencil_box' at (1) has no IMPLICIT type I fixed the code by adding use petscdmda and the implicit none and it ran without error on those number of processes on both a MacOS and a Linux system program main ! Solves the linear system J x = f use petscksp; use petscdm; use petscdmda implicit none #include Please let me know if you still have a problem. Barry On Jan 22, 2014, at 5:15 AM, Xiao, Jianjun (IKET) wrote: > Dear Barry, > > I modified ex44f.F90, and ran the case on my 64-processors cluster. Please find the file in the attachment. > > I tried various number of processors. It seems that for number of processors: 1, 2, 3, 4, 5, 6, 7, 8, 16, 32 and 64 it works fine. For numbers such as 20, 30, 31, 60, 61 and 62, I got the error below. This time, even for MATMPIBAIJ I got error. I did not try all the numbers between 1-64. If you need more information, please let me know. > > Thank you for your help. > > Best regards > JJ > > > For MATMPISBAIJ, I got the error like this: > > [55]PETSC ERROR: [55] MatAssemblyBegin_MPISBAIJ line 483 src/mat/impls/sbaij/mpi/mpisbaij.c > [55]PETSC ERROR: [55] MatAssemblyBegin line 4865 src/mat/interface/matrix.c > [55]PETSC ERROR: [55] DMCreateMatrix_DA_3d_MPISBAIJ line 1694 src/dm/impls/da/fdda.c > [55]PETSC ERROR: [55] DMCreateMatrix_DA line 626 src/dm/impls/da/fdda.c > [55]PETSC ERROR: [55] DMCreateMatrix line 1002 src/dm/interface/dm.c > [55]PETSC ERROR: --------------------- Error Message ------------------------------------ > [55]PETSC ERROR: Signal received! > [55]PETSC ERROR: ------------------------------------------------------------------------ > [55]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > [55]PETSC ERROR: See docs/changes/index.html for recent updates. > [55]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [55]PETSC ERROR: See docs/index.html for manual pages. > [55]PETSC ERROR: ------------------------------------------------------------------------ > [55]PETSC ERROR: ./ex44f on a linux-gnu named cluster07 by xiao Wed Jan 22 11:54:32 2014 > [55]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [55]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 > [55]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [55]PETSC ERROR: ------------------------------------------------------------------------ > [55]PETSC ERROR: User provided function() line 0 in unknown file > > > For MATMPIBAIJ, I got the error like this: > > [44]PETSC ERROR: --------------------- Error Message ------------------------------------ > [44]PETSC ERROR: Argument out of range! > [44]PETSC ERROR: Trying to set preallocation for row 6678 less than first local row 6714! > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > [44]PETSC ERROR: See docs/changes/index.html for recent updates. > [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [44]PETSC ERROR: See docs/index.html for manual pages. > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 > [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 > [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: DMCreateMatrix_DA_3d_MPIBAIJ() line 1508 in src/dm/impls/da/fdda.c > [44]PETSC ERROR: DMCreateMatrix_DA() line 771 in src/dm/impls/da/fdda.c > [44]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c > [44]PETSC ERROR: --------------------- Error Message ------------------------------------ > [44]PETSC ERROR: Corrupt argument: > see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind! > [44]PETSC ERROR: Invalid Pointer to Object: Parameter # 1! > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 > [44]PETSC ERROR: See docs/changes/index.html for recent updates. > [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [44]PETSC ERROR: See docs/index.html for manual pages. > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 > [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 > [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [44]PETSC ERROR: ------------------------------------------------------------------------ > [44]PETSC ERROR: MatDestroy() line 1029 in src/mat/interface/matrix.c > > ________________________________________ > From: Barry Smith [bsmith at mcs.anl.gov] > Sent: Monday, January 20, 2014 8:37 PM > To: Xiao, Jianjun (IKET) > Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov > Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix > > Thanks for reporting the problem. This is our error. Could you please send us the code that generates the error so we can reproduce the problem, determine the cause and fix it. > > Barry > > We need to know the exact values of imax,jmax, kmax etc to reproduce the problem. > > > > On Jan 20, 2014, at 9:33 AM, Xiao, Jianjun (IKET) wrote: > >> Dear developers, >> >> I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. >> >> CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & >> & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & >> & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& >> & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & >> & PETSC_NULL_INTEGER,da,ierr) >> >> CALL DMSetMatType(da,MATMPISBAIJ,ierr) >> CALL DMCreateMatrix(da,mat,ierr) >> >> A cluster with 64 processors was used for the testing. >> >> When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. >> >> For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. >> >> When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. >> >> >> mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ >> mpirun: [25]PETSC ERROR: Argument out of range! >> mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! >> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >> mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. >> mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. >> mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c >> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c >> mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c >> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c >> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c >> mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >> >> Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. >> >> CALL DMSetMatType(da,MATMPIBAIJ,ierr) >> CALL DMCreateMatrix(da,gfmat,ierr) >> >> Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. >> >> JJ > > -------------- next part -------------- A non-text attachment was scrubbed... Name: ex44f.F90 Type: text/x-fortran Size: 3356 bytes Desc: ex44f.F90 URL: From balay at mcs.anl.gov Wed Jan 22 17:20:08 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Wed, 22 Jan 2014 17:20:08 -0600 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: References: <87d2jkh8sp.fsf@jedbrown.org>, <87d2jjdgdm.fsf@jedbrown.org> , Message-ID: On Wed, 22 Jan 2014, Roc Wang wrote: > > > Yeah. The program works with -skip_petscrc. I am trying to run the full > > > PETSc solver and take a look what will happen. > > > > > > I just recalled there was an error caused by calling MPI_Bcast() when I > > > transferred the program from other machine to vesta. At that time I just > > > replace the MPI_Bcast(). I am not sure whether it is the same problem as > > > what we have here. But just for your information. > > > > You cannot relocate Blue Gene binaries to machines with a different > > driver. Vesta has a different driver than Mira/Cetus right now. > > > There may be some misunderstanding. When I said "transferred the program" I meant that the code was compiled successfully on other machines (local PC and cluster on other institution) and copy the source code and compile it to vesta, not just copy the executable binary file. Working directory: /gpfs/vesta-home/pwang/Zsoft/petsc-3.3-p6 -skip_petscrc is the right fix for petsc-3.3 Its best to use latest petsc-3.4 which has the code fix. Satish From dharmareddy84 at gmail.com Wed Jan 22 17:26:18 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 17:26:18 -0600 Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN In-Reply-To: <87eh3zabet.fsf@jedbrown.org> References: <94A22CE9-F306-4284-8ADB-E93F2CEBFC49@mcs.anl.gov> <87ha8vac4h.fsf@jedbrown.org> <223E08D0-F6AF-4D26-9FA5-062B2CDA5F68@mcs.anl.gov> <87eh3zabet.fsf@jedbrown.org> Message-ID: Hello, I have attached the test case which demonstrates the problem. The following is the issue: globalX1=1.0 globalX2=2.0 localX1=-1.0 localX2=-2.0 Begin: localX1 to globalX1 Begin: localX2 to globalX2 End: localX1 to globalX1 End: localX2 to globalX2 i get globalX1 = -2 and globalX2 = -1.0 instead of globalX1 = -1 and globalX2 = -2.0 When my code crashed, i was doing this to set the ub and lb vectors for SNES and (now) obviously the code did not progress as the ub and lb were swaped. Should the snes warn for such case where lb < ub is not valid, by user error or otherwise as in this case. On Wed, Jan 22, 2014 at 4:39 PM, Jed Brown wrote: > Barry Smith writes: >> Ok, well the damn code is so convoluted it is hard to see that it >> is even trying to do things right for multiple independent calls. > > How would you change this to make it less convoluted? > > static PetscErrorCode PetscSFReduceEnd_Basic(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) > { > void (*UnpackOp)(PetscInt,const PetscInt*,void*,const void*); > PetscErrorCode ierr; > PetscSFBasicPack link; > PetscInt i,nrootranks; > const PetscInt *rootoffset,*rootloc; > > PetscFunctionBegin; > ierr = PetscSFBasicGetPackInUse(sf,unit,rootdata,PETSC_OWN_POINTER,&link);CHKERRQ(ierr); > /* This implementation could be changed to unpack as receives arrive, at the cost of non-determinism */ > ierr = PetscSFBasicPackWaitall(sf,link);CHKERRQ(ierr); > ierr = PetscSFBasicGetRootInfo(sf,&nrootranks,NULL,&rootoffset,&rootloc);CHKERRQ(ierr); > ierr = PetscSFBasicPackGetUnpackOp(sf,link,op,&UnpackOp);CHKERRQ(ierr); > for (i=0; i PetscMPIInt n = rootoffset[i+1] - rootoffset[i]; > const void *packstart = link->root+rootoffset[i]*link->unitbytes; > > (*UnpackOp)(n,rootloc+rootoffset[i],rootdata,packstart); > } > ierr = PetscSFBasicReclaimPack(sf,&link);CHKERRQ(ierr); > PetscFunctionReturn(0); > } > > >> You?ll have to pry out of Dhamendar his test case that fails. > > That would be useful. -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 -------------- next part -------------- A non-text attachment was scrubbed... Name: testDMLToG.F90 Type: application/octet-stream Size: 3241 bytes Desc: not available URL: From jed at jedbrown.org Wed Jan 22 17:27:21 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 16:27:21 -0700 Subject: [petsc-users] Petsc cannot be initialized on vesta in some --mode options In-Reply-To: References: <87d2jkh8sp.fsf@jedbrown.org> <87d2jjdgdm.fsf@jedbrown.org> Message-ID: <87wqhr8una.fsf@jedbrown.org> Satish Balay writes: > Working directory: /gpfs/vesta-home/pwang/Zsoft/petsc-3.3-p6 Crap, good eye Satish. Somehow I confused this with another thread in which I verified that 3.4.3 was being used. Roc, please use the current version of PETSc. Jeff, false alarm. This is an indirect effect of the old posix issue. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Wed Jan 22 17:33:34 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 17:33:34 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: On Wed, Jan 22, 2014 at 4:50 PM, Dharmendar Reddy wrote: > I take back my earlier email... > Do you have the threadcomm stuff turned on? Matt > I see the error irrespective of valgrind options. I did a clean > compile to test it few times now. > See the attached valgrind.log > > Now the difference between, ex5f90.F and my code is that i use > DMSNESSetFunctionLocal in the case where the code fails. > > I have also attached the solver.F90 which wraps the calls to snes, Now > the solver has to interface (1) for equations which are handled with a > DM and (2) for equation with out DM , here i use SNESSetFunction, and > this part of the code runs fine with the test case in the code which > can be compiled with -DTestSolver and standard petsc makefile > > The case with DM is linked deeply into my code, i am trying to get to > a test case for that. > > thanks > Reddy > > On Wed, Jan 22, 2014 at 4:30 PM, Barry Smith wrote: > > > > The thing to use in valgrind is -q --tool=memcheck > > > > This checks for corrupted and illegally accessed memory, > uninitialized memory etc It shows the exact lines that memory is used > incorrectly so you can fix your code. > > > > Barry > > > > On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy > wrote: > > > >> Hello, > >> The code works fine if i run with valgrind --leak-check=yes > exename args > >> it fails if i run valgrind exename args > >> > >> Any suggestions on what to look for my code? > >> > >> Thanks > >> Reddy > >> > >> On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy > >> wrote: > >>> Hello, > >>> I tried using the SNESSetConvergenceTest in ex5f90.F using my > >>> subroutine. Works as expected. I will try to run my code through > >>> valgrind. > >>> > >>> Thanks > >>> Reddy > >>> > >>> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy > >>> wrote: > >>>> Hello, > >>>> I will also try to create a stand alone test case. > >>>> > >>>> Thanks > >>>> Reddy > >>>> > >>>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley > wrote: > >>>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith > wrote: > >>>>>> > >>>>>> > >>>>>> We need more information to track this down. Could you make a > simple > >>>>>> standalone code that reproduces the problem? Just creates a this, > creates a > >>>>>> SNES, sets the function, sets the test code and then crashes when > runs. > >>>>>> > >>>>>> But since it is not crashing in the SNESConvergenceTest_snes > routine I > >>>>>> suspect it may be memory corruption. Have you run your code under > valgrind? > >>>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > >>>>> > >>>>> > >>>>> I am putting his convergence test into ex5f right now. This can be > >>>>> valgrinded. I will send an update when it runs. > >>>>> > >>>>> Matt > >>>>> > >>>>>> > >>>>>> > >>>>>> Barry > >>>>>> > >>>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > >>>>>> wrote: > >>>>>> > >>>>>>> Hello, > >>>>>>> I am getting a segmentation fault when i use > >>>>>>> SNESSetConvergenceTest from Fortran. > >>>>>>> > >>>>>>> I use the following: > >>>>>>> > >>>>>>> call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, > >>>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) > >>>>>>> > >>>>>>> where the soubtoutine is > >>>>>>> > >>>>>>> subroutine > >>>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, > ierr) > >>>>>>> implicit none > >>>>>>> #include "finclude/petsc.h" > >>>>>>> ! IO Variables > >>>>>>> SNES :: snes > >>>>>>> integer :: it > >>>>>>> PetscReal :: xnorm > >>>>>>> PetscReal :: gnorm > >>>>>>> PetscReal :: fnorm > >>>>>>> SNESConvergedReason :: reason > >>>>>>> type(Solver_t) :: this > >>>>>>> PetscErrorCode :: ierr > >>>>>>> ! Local Variables > >>>>>>> Vec :: X, dX > >>>>>>> Vec :: F, W, G > >>>>>>> real(WP) :: lambda > >>>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm > >>>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) > >>>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) > >>>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, > ierr) > >>>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT > >>>>>>> end subroutine SNESConvergenceTest_snes > >>>>>>> > >>>>>>> Code works fine if the call at Line 1 is commented i.e, if i donot > >>>>>>> set the convergencetest > >>>>>>> > >>>>>>> I have attached the stack trace when the code fails (traceFail.log) > >>>>>>> and stack trace of the code which runs well (tracePass.log). > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> Thanks > >>>>>>> Reddy > >>>>>>> > >>>>>> > >>>>> > >>>>> > >>>>> > >>>>> -- > >>>>> What most experimenters take for granted before they begin their > experiments > >>>>> is infinitely more interesting than any results to which their > experiments > >>>>> lead. > >>>>> -- Norbert Wiener > >>>> > >>>> > >>>> > >>>> -- > >>>> ----------------------------------------------------- > >>>> Dharmendar Reddy Palle > >>>> Graduate Student > >>>> Microelectronics Research center, > >>>> University of Texas at Austin, > >>>> 10100 Burnet Road, Bldg. 160 > >>>> MER 2.608F, TX 78758-4445 > >>>> e-mail: dharmareddy84 at gmail.com > >>>> Phone: +1-512-350-9082 > >>>> United States of America. > >>>> Homepage: https://webspace.utexas.edu/~dpr342 > >>> > >>> > >>> > >>> -- > >>> ----------------------------------------------------- > >>> Dharmendar Reddy Palle > >>> Graduate Student > >>> Microelectronics Research center, > >>> University of Texas at Austin, > >>> 10100 Burnet Road, Bldg. 160 > >>> MER 2.608F, TX 78758-4445 > >>> e-mail: dharmareddy84 at gmail.com > >>> Phone: +1-512-350-9082 > >>> United States of America. > >>> Homepage: https://webspace.utexas.edu/~dpr342 > >> > >> > >> > >> -- > >> ----------------------------------------------------- > >> Dharmendar Reddy Palle > >> Graduate Student > >> Microelectronics Research center, > >> University of Texas at Austin, > >> 10100 Burnet Road, Bldg. 160 > >> MER 2.608F, TX 78758-4445 > >> e-mail: dharmareddy84 at gmail.com > >> Phone: +1-512-350-9082 > >> United States of America. > >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From daveliu at mit.edu Wed Jan 22 17:37:40 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 22 Jan 2014 18:37:40 -0500 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? Message-ID: Hi, I'm running a very simple code, consisting of just PetscFinalize and PetscInitialize and nothing else. I'm running it with valgrind using the command "valgrind ./run" I also tried (as the petsc homepage suggests) ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off For both cases, I get tons of error messages like "Conditional jump or move depends on uninitialised value(s)" "Use of uninitialised value of size 8" "Invalid read of size 8" "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" with a final valgrind summary that includes things like ==29401== definitely lost: 5,956 bytes in 55 blocks ==29401== indirectly lost: 3,722 bytes in 22 blocks ==29401== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from 4) Is this normal or is there something wrong with my petsc/valgrind installation? For the record, valgrind was already there when I compiled petsc. -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Wed Jan 22 17:37:59 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 17:37:59 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: On Wed, Jan 22, 2014 at 5:33 PM, Matthew Knepley wrote: > > On Wed, Jan 22, 2014 at 4:50 PM, Dharmendar Reddy > wrote: >> >> I take back my earlier email... > > > Do you have the threadcomm stuff turned on? I do not know what this means. Is related to compile time flags for my fortran code ? I link to mkl which is threaded. But otherwise, i guess, the answer is no. > > Matt > >> >> I see the error irrespective of valgrind options. I did a clean >> compile to test it few times now. >> See the attached valgrind.log >> >> Now the difference between, ex5f90.F and my code is that i use >> DMSNESSetFunctionLocal in the case where the code fails. >> >> I have also attached the solver.F90 which wraps the calls to snes, Now >> the solver has to interface (1) for equations which are handled with a >> DM and (2) for equation with out DM , here i use SNESSetFunction, and >> this part of the code runs fine with the test case in the code which >> can be compiled with -DTestSolver and standard petsc makefile >> >> The case with DM is linked deeply into my code, i am trying to get to >> a test case for that. >> >> thanks >> Reddy >> >> On Wed, Jan 22, 2014 at 4:30 PM, Barry Smith wrote: >> > >> > The thing to use in valgrind is -q --tool=memcheck >> > >> > This checks for corrupted and illegally accessed memory, >> > uninitialized memory etc It shows the exact lines that memory is used >> > incorrectly so you can fix your code. >> > >> > Barry >> > >> > On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy >> > wrote: >> > >> >> Hello, >> >> The code works fine if i run with valgrind --leak-check=yes >> >> exename args >> >> it fails if i run valgrind exename args >> >> >> >> Any suggestions on what to look for my code? >> >> >> >> Thanks >> >> Reddy >> >> >> >> On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy >> >> wrote: >> >>> Hello, >> >>> I tried using the SNESSetConvergenceTest in ex5f90.F using my >> >>> subroutine. Works as expected. I will try to run my code through >> >>> valgrind. >> >>> >> >>> Thanks >> >>> Reddy >> >>> >> >>> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy >> >>> wrote: >> >>>> Hello, >> >>>> I will also try to create a stand alone test case. >> >>>> >> >>>> Thanks >> >>>> Reddy >> >>>> >> >>>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley >> >>>> wrote: >> >>>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith >> >>>>> wrote: >> >>>>>> >> >>>>>> >> >>>>>> We need more information to track this down. Could you make a >> >>>>>> simple >> >>>>>> standalone code that reproduces the problem? Just creates a this, >> >>>>>> creates a >> >>>>>> SNES, sets the function, sets the test code and then crashes when >> >>>>>> runs. >> >>>>>> >> >>>>>> But since it is not crashing in the SNESConvergenceTest_snes >> >>>>>> routine I >> >>>>>> suspect it may be memory corruption. Have you run your code under >> >>>>>> valgrind? >> >>>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >> >>>>> >> >>>>> >> >>>>> I am putting his convergence test into ex5f right now. This can be >> >>>>> valgrinded. I will send an update when it runs. >> >>>>> >> >>>>> Matt >> >>>>> >> >>>>>> >> >>>>>> >> >>>>>> Barry >> >>>>>> >> >>>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >> >>>>>> >> >>>>>> wrote: >> >>>>>> >> >>>>>>> Hello, >> >>>>>>> I am getting a segmentation fault when i use >> >>>>>>> SNESSetConvergenceTest from Fortran. >> >>>>>>> >> >>>>>>> I use the following: >> >>>>>>> >> >>>>>>> call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, >> >>>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) >> >>>>>>> >> >>>>>>> where the soubtoutine is >> >>>>>>> >> >>>>>>> subroutine >> >>>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, >> >>>>>>> ierr) >> >>>>>>> implicit none >> >>>>>>> #include "finclude/petsc.h" >> >>>>>>> ! IO Variables >> >>>>>>> SNES :: snes >> >>>>>>> integer :: it >> >>>>>>> PetscReal :: xnorm >> >>>>>>> PetscReal :: gnorm >> >>>>>>> PetscReal :: fnorm >> >>>>>>> SNESConvergedReason :: reason >> >>>>>>> type(Solver_t) :: this >> >>>>>>> PetscErrorCode :: ierr >> >>>>>>> ! Local Variables >> >>>>>>> Vec :: X, dX >> >>>>>>> Vec :: F, W, G >> >>>>>>> real(WP) :: lambda >> >>>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm >> >>>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >> >>>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, ierr) >> >>>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, >> >>>>>>> ierr) >> >>>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT >> >>>>>>> end subroutine SNESConvergenceTest_snes >> >>>>>>> >> >>>>>>> Code works fine if the call at Line 1 is commented i.e, if i >> >>>>>>> donot >> >>>>>>> set the convergencetest >> >>>>>>> >> >>>>>>> I have attached the stack trace when the code fails >> >>>>>>> (traceFail.log) >> >>>>>>> and stack trace of the code which runs well (tracePass.log). >> >>>>>>> >> >>>>>>> >> >>>>>>> >> >>>>>>> Thanks >> >>>>>>> Reddy >> >>>>>>> >> >>>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> -- >> >>>>> What most experimenters take for granted before they begin their >> >>>>> experiments >> >>>>> is infinitely more interesting than any results to which their >> >>>>> experiments >> >>>>> lead. >> >>>>> -- Norbert Wiener >> >>>> >> >>>> >> >>>> >> >>>> -- >> >>>> ----------------------------------------------------- >> >>>> Dharmendar Reddy Palle >> >>>> Graduate Student >> >>>> Microelectronics Research center, >> >>>> University of Texas at Austin, >> >>>> 10100 Burnet Road, Bldg. 160 >> >>>> MER 2.608F, TX 78758-4445 >> >>>> e-mail: dharmareddy84 at gmail.com >> >>>> Phone: +1-512-350-9082 >> >>>> United States of America. >> >>>> Homepage: https://webspace.utexas.edu/~dpr342 >> >>> >> >>> >> >>> >> >>> -- >> >>> ----------------------------------------------------- >> >>> Dharmendar Reddy Palle >> >>> Graduate Student >> >>> Microelectronics Research center, >> >>> University of Texas at Austin, >> >>> 10100 Burnet Road, Bldg. 160 >> >>> MER 2.608F, TX 78758-4445 >> >>> e-mail: dharmareddy84 at gmail.com >> >>> Phone: +1-512-350-9082 >> >>> United States of America. >> >>> Homepage: https://webspace.utexas.edu/~dpr342 >> >> >> >> >> >> >> >> -- >> >> ----------------------------------------------------- >> >> Dharmendar Reddy Palle >> >> Graduate Student >> >> Microelectronics Research center, >> >> University of Texas at Austin, >> >> 10100 Burnet Road, Bldg. 160 >> >> MER 2.608F, TX 78758-4445 >> >> e-mail: dharmareddy84 at gmail.com >> >> Phone: +1-512-350-9082 >> >> United States of America. >> >> Homepage: https://webspace.utexas.edu/~dpr342 >> > >> >> >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> Graduate Student >> Microelectronics Research center, >> University of Texas at Austin, >> 10100 Burnet Road, Bldg. 160 >> MER 2.608F, TX 78758-4445 >> e-mail: dharmareddy84 at gmail.com >> Phone: +1-512-350-9082 >> United States of America. >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From knepley at gmail.com Wed Jan 22 17:39:15 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 17:39:15 -0600 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: References: Message-ID: On Wed, Jan 22, 2014 at 5:37 PM, David Liu wrote: > Hi, I'm running a very simple code, consisting of just PetscFinalize and > PetscInitialize and nothing else. > > I'm running it with valgrind using the command > "valgrind ./run" > > I also tried (as the petsc homepage suggests) > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off > > For both cases, I get tons of error messages like > "Conditional jump or move depends on uninitialised value(s)" > "Use of uninitialised value of size 8" > "Invalid read of size 8" > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" > > with a final valgrind summary that includes things like > ==29401== definitely lost: 5,956 bytes in 55 blocks > ==29401== indirectly lost: 3,722 bytes in 22 blocks > ==29401== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from 4) > > Is this normal or is there something wrong with my petsc/valgrind > installation? For the record, valgrind was already there when I compiled > petsc. > You could include the log so we could verify, but this is common due to MPI which is rarely valgrind clean. Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Wed Jan 22 17:39:24 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 16:39:24 -0700 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: <87r47z8u37.fsf@jedbrown.org> Dharmendar Reddy writes: > On Wed, Jan 22, 2014 at 5:33 PM, Matthew Knepley wrote: >> >> Do you have the threadcomm stuff turned on? > > I do not know what this means. Is related to compile time flags for my > fortran code ? It would have been a configure flag for PETSc. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jed at jedbrown.org Wed Jan 22 17:40:50 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 16:40:50 -0700 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: References: Message-ID: <87ob338u0t.fsf@jedbrown.org> David Liu writes: > Hi, I'm running a very simple code, consisting of just PetscFinalize and > PetscInitialize and nothing else. > > I'm running it with valgrind using the command > "valgrind ./run" > > I also tried (as the petsc homepage suggests) > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off > > For both cases, I get tons of error messages like > "Conditional jump or move depends on uninitialised value(s)" > "Use of uninitialised value of size 8" > "Invalid read of size 8" > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" You have to send the *exact and complete* output, not snippets. Are you using Open MPI? Chances are this is in the stack somewhere because we regularly test PETSc itself using valgrind. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Wed Jan 22 17:45:03 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 17:45:03 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: On Wed, Jan 22, 2014 at 5:37 PM, Dharmendar Reddy wrote: > On Wed, Jan 22, 2014 at 5:33 PM, Matthew Knepley > wrote: > > > > On Wed, Jan 22, 2014 at 4:50 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > > wrote: > >> > >> I take back my earlier email... > > > > > > Do you have the threadcomm stuff turned on? > > I do not know what this means. Is related to compile time flags for my > fortran code ? I link to mkl which is threaded. But otherwise, i > guess, the answer is no. > The weird business looks like its in pthreads, so could you reconfigure without MKL? $PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-f-blas-lapack --PETSC_ARCH=arch-testing It would not surprise me if this was the problem. Matt > > > > > Matt > > > >> > >> I see the error irrespective of valgrind options. I did a clean > >> compile to test it few times now. > >> See the attached valgrind.log > >> > >> Now the difference between, ex5f90.F and my code is that i use > >> DMSNESSetFunctionLocal in the case where the code fails. > >> > >> I have also attached the solver.F90 which wraps the calls to snes, Now > >> the solver has to interface (1) for equations which are handled with a > >> DM and (2) for equation with out DM , here i use SNESSetFunction, and > >> this part of the code runs fine with the test case in the code which > >> can be compiled with -DTestSolver and standard petsc makefile > >> > >> The case with DM is linked deeply into my code, i am trying to get to > >> a test case for that. > >> > >> thanks > >> Reddy > >> > >> On Wed, Jan 22, 2014 at 4:30 PM, Barry Smith > wrote: > >> > > >> > The thing to use in valgrind is -q --tool=memcheck > >> > > >> > This checks for corrupted and illegally accessed memory, > >> > uninitialized memory etc It shows the exact lines that memory is used > >> > incorrectly so you can fix your code. > >> > > >> > Barry > >> > > >> > On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > >> > wrote: > >> > > >> >> Hello, > >> >> The code works fine if i run with valgrind --leak-check=yes > >> >> exename args > >> >> it fails if i run valgrind exename args > >> >> > >> >> Any suggestions on what to look for my code? > >> >> > >> >> Thanks > >> >> Reddy > >> >> > >> >> On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy > >> >> wrote: > >> >>> Hello, > >> >>> I tried using the SNESSetConvergenceTest in ex5f90.F using my > >> >>> subroutine. Works as expected. I will try to run my code through > >> >>> valgrind. > >> >>> > >> >>> Thanks > >> >>> Reddy > >> >>> > >> >>> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy > >> >>> wrote: > >> >>>> Hello, > >> >>>> I will also try to create a stand alone test case. > >> >>>> > >> >>>> Thanks > >> >>>> Reddy > >> >>>> > >> >>>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley < > knepley at gmail.com> > >> >>>> wrote: > >> >>>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith > >> >>>>> wrote: > >> >>>>>> > >> >>>>>> > >> >>>>>> We need more information to track this down. Could you make a > >> >>>>>> simple > >> >>>>>> standalone code that reproduces the problem? Just creates a this, > >> >>>>>> creates a > >> >>>>>> SNES, sets the function, sets the test code and then crashes when > >> >>>>>> runs. > >> >>>>>> > >> >>>>>> But since it is not crashing in the SNESConvergenceTest_snes > >> >>>>>> routine I > >> >>>>>> suspect it may be memory corruption. Have you run your code under > >> >>>>>> valgrind? > >> >>>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > >> >>>>> > >> >>>>> > >> >>>>> I am putting his convergence test into ex5f right now. This can be > >> >>>>> valgrinded. I will send an update when it runs. > >> >>>>> > >> >>>>> Matt > >> >>>>> > >> >>>>>> > >> >>>>>> > >> >>>>>> Barry > >> >>>>>> > >> >>>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy > >> >>>>>> > >> >>>>>> wrote: > >> >>>>>> > >> >>>>>>> Hello, > >> >>>>>>> I am getting a segmentation fault when i use > >> >>>>>>> SNESSetConvergenceTest from Fortran. > >> >>>>>>> > >> >>>>>>> I use the following: > >> >>>>>>> > >> >>>>>>> call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, > >> >>>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) > >> >>>>>>> > >> >>>>>>> where the soubtoutine is > >> >>>>>>> > >> >>>>>>> subroutine > >> >>>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, > >> >>>>>>> ierr) > >> >>>>>>> implicit none > >> >>>>>>> #include "finclude/petsc.h" > >> >>>>>>> ! IO Variables > >> >>>>>>> SNES :: snes > >> >>>>>>> integer :: it > >> >>>>>>> PetscReal :: xnorm > >> >>>>>>> PetscReal :: gnorm > >> >>>>>>> PetscReal :: fnorm > >> >>>>>>> SNESConvergedReason :: reason > >> >>>>>>> type(Solver_t) :: this > >> >>>>>>> PetscErrorCode :: ierr > >> >>>>>>> ! Local Variables > >> >>>>>>> Vec :: X, dX > >> >>>>>>> Vec :: F, W, G > >> >>>>>>> real(WP) :: lambda > >> >>>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm > >> >>>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) > >> >>>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, > ierr) > >> >>>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, reason, > >> >>>>>>> ierr) > >> >>>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT > >> >>>>>>> end subroutine SNESConvergenceTest_snes > >> >>>>>>> > >> >>>>>>> Code works fine if the call at Line 1 is commented i.e, if i > >> >>>>>>> donot > >> >>>>>>> set the convergencetest > >> >>>>>>> > >> >>>>>>> I have attached the stack trace when the code fails > >> >>>>>>> (traceFail.log) > >> >>>>>>> and stack trace of the code which runs well (tracePass.log). > >> >>>>>>> > >> >>>>>>> > >> >>>>>>> > >> >>>>>>> Thanks > >> >>>>>>> Reddy > >> >>>>>>> > >> >>>>>> > >> >>>>> > >> >>>>> > >> >>>>> > >> >>>>> -- > >> >>>>> What most experimenters take for granted before they begin their > >> >>>>> experiments > >> >>>>> is infinitely more interesting than any results to which their > >> >>>>> experiments > >> >>>>> lead. > >> >>>>> -- Norbert Wiener > >> >>>> > >> >>>> > >> >>>> > >> >>>> -- > >> >>>> ----------------------------------------------------- > >> >>>> Dharmendar Reddy Palle > >> >>>> Graduate Student > >> >>>> Microelectronics Research center, > >> >>>> University of Texas at Austin, > >> >>>> 10100 Burnet Road, Bldg. 160 > >> >>>> MER 2.608F, TX 78758-4445 > >> >>>> e-mail: dharmareddy84 at gmail.com > >> >>>> Phone: +1-512-350-9082 > >> >>>> United States of America. > >> >>>> Homepage: https://webspace.utexas.edu/~dpr342 > >> >>> > >> >>> > >> >>> > >> >>> -- > >> >>> ----------------------------------------------------- > >> >>> Dharmendar Reddy Palle > >> >>> Graduate Student > >> >>> Microelectronics Research center, > >> >>> University of Texas at Austin, > >> >>> 10100 Burnet Road, Bldg. 160 > >> >>> MER 2.608F, TX 78758-4445 > >> >>> e-mail: dharmareddy84 at gmail.com > >> >>> Phone: +1-512-350-9082 > >> >>> United States of America. > >> >>> Homepage: https://webspace.utexas.edu/~dpr342 > >> >> > >> >> > >> >> > >> >> -- > >> >> ----------------------------------------------------- > >> >> Dharmendar Reddy Palle > >> >> Graduate Student > >> >> Microelectronics Research center, > >> >> University of Texas at Austin, > >> >> 10100 Burnet Road, Bldg. 160 > >> >> MER 2.608F, TX 78758-4445 > >> >> e-mail: dharmareddy84 at gmail.com > >> >> Phone: +1-512-350-9082 > >> >> United States of America. > >> >> Homepage: https://webspace.utexas.edu/~dpr342 > >> > > >> > >> > >> > >> -- > >> ----------------------------------------------------- > >> Dharmendar Reddy Palle > >> Graduate Student > >> Microelectronics Research center, > >> University of Texas at Austin, > >> 10100 Burnet Road, Bldg. 160 > >> MER 2.608F, TX 78758-4445 > >> e-mail: dharmareddy84 at gmail.com > >> Phone: +1-512-350-9082 > >> United States of America. > >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From daveliu at mit.edu Wed Jan 22 17:53:58 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 22 Jan 2014 18:53:58 -0500 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: <87ob338u0t.fsf@jedbrown.org> References: <87ob338u0t.fsf@jedbrown.org> Message-ID: sure thing. Here's what I get when I directly run the executable (no MPI if I understand correctly). If I do "mpirun -n 1 valgrind ./run", I get the exact same thing. ==29900== Memcheck, a memory error detector ==29900== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et al. ==29900== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright info ==29900== Command: ./run ==29900== ==29900== Conditional jump or move depends on uninitialised value(s) ==29900== at 0xACE64AF: ____strtoul_l_internal (strtol_l.c:438) ==29900== by 0x71C2EE2: gotoblas_affinity_init (in /usr/lib/openblas-base/libopenblas.so.0) ==29900== by 0x6E9811A: gotoblas_init (in /usr/lib/openblas-base/libopenblas.so.0) ==29900== by 0x400DF7F: call_init (dl-init.c:85) ==29900== by 0x400E076: _dl_init (dl-init.c:134) ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) ==29900== ==29900== Conditional jump or move depends on uninitialised value(s) ==29900== at 0xACE6427: ____strtoul_l_internal (strtol_l.c:442) ==29900== by 0x71C2EE2: gotoblas_affinity_init (in /usr/lib/openblas-base/libopenblas.so.0) ==29900== by 0x6E9811A: gotoblas_init (in /usr/lib/openblas-base/libopenblas.so.0) ==29900== by 0x400DF7F: call_init (dl-init.c:85) ==29900== by 0x400E076: _dl_init (dl-init.c:134) ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) ==29900== ==29900== Use of uninitialised value of size 8 ==29900== at 0xACE6465: ____strtoul_l_internal (strtol_l.c:466) ==29900== by 0x71C2EE2: gotoblas_affinity_init (in /usr/lib/openblas-base/libopenblas.so.0) ==29900== by 0x6E9811A: gotoblas_init (in /usr/lib/openblas-base/libopenblas.so.0) ==29900== by 0x400DF7F: call_init (dl-init.c:85) ==29900== by 0x400E076: _dl_init (dl-init.c:134) ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) ==29900== ==29900== Invalid read of size 8 ==29900== at 0xAD378CD: _wordcopy_fwd_dest_aligned (wordcopy.c:205) ==29900== by 0xAD3156E: __GI_memmove (memmove.c:76) ==29900== by 0xAD38B7B: argz_insert (argz-insert.c:55) ==29900== by 0xA4405E5: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA4407FF: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA43FFC8: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA440F57: lt_dlforeachfile (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA447FCE: mca_base_component_find (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA448AC1: mca_base_components_open (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA463C44: opal_paffinity_base_open (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA439AD2: opal_init (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA1E6B3E: orte_init (in /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) ==29900== Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd ==29900== at 0x4C28BED: malloc (vg_replace_malloc.c:263) ==29900== by 0xA43F658: lt__malloc (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA44078E: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA43FFC8: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA440F57: lt_dlforeachfile (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA447FCE: mca_base_component_find (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA448AC1: mca_base_components_open (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA463C44: opal_paffinity_base_open (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA439AD2: opal_init (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA1E6B3E: orte_init (in /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x9F7F20D: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== ==29900== Syscall param sched_setaffinity(mask) points to unaddressable byte(s) ==29900== at 0xAD852F9: syscall (syscall.S:39) ==29900== by 0xFD75621: ??? (in /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) ==29900== by 0xFD75A3C: ??? (in /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) ==29900== by 0xFD76599: ??? (in /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) ==29900== by 0xFD754AC: ??? (in /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) ==29900== by 0xA463AEA: opal_paffinity_base_select (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA439B0D: opal_init (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA1E6B3E: orte_init (in /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x9F7F20D: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) ==29900== by 0x400CC6: main (prog.c:5) ==29900== Address 0x0 is not stack'd, malloc'd or (recently) free'd ==29900== ==29900== Conditional jump or move depends on uninitialised value(s) ==29900== at 0x9F5E578: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x9F7F20D: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) ==29900== by 0x400CC6: main (prog.c:5) ==29900== ==29900== Conditional jump or move depends on uninitialised value(s) ==29900== at 0x9F5E57C: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x9F7F20D: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) ==29900== by 0x400CC6: main (prog.c:5) ==29900== ==29900== Syscall param writev(vector[...]) points to uninitialised byte(s) ==29900== at 0xAD81BE7: writev (writev.c:56) ==29900== by 0x11397E22: ??? (in /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) ==29900== by 0x11398C5C: ??? (in /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) ==29900== by 0x1139C2EB: ??? (in /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) ==29900== by 0x1118E7BD: ??? (in /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) ==29900== by 0x1118EDB8: ??? (in /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) ==29900== by 0x10D85AD8: ??? (in /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) ==29900== by 0x10D854DE: ??? (in /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x9F7F20D: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) ==29900== by 0x400CC6: main (prog.c:5) ==29900== Address 0x1815faf7 is 87 bytes inside a block of size 256 alloc'd ==29900== at 0x4C28CCE: realloc (vg_replace_malloc.c:632) ==29900== by 0xA43ADB7: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0xA43B8CD: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) ==29900== by 0x10D85AAC: ??? (in /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) ==29900== by 0x10D854DE: ??? (in /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x9F7F20D: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) ==29900== by 0x400CC6: main (prog.c:5) ==29900== ==29900== ==29900== HEAP SUMMARY: ==29900== in use at exit: 258,198 bytes in 2,787 blocks ==29900== total heap usage: 11,718 allocs, 8,931 frees, 17,060,981 bytes allocated ==29900== ==29900== LEAK SUMMARY: ==29900== definitely lost: 5,956 bytes in 55 blocks ==29900== indirectly lost: 3,722 bytes in 22 blocks ==29900== possibly lost: 0 bytes in 0 blocks ==29900== still reachable: 248,520 bytes in 2,710 blocks ==29900== suppressed: 0 bytes in 0 blocks ==29900== Rerun with --leak-check=full to see details of leaked memory ==29900== ==29900== For counts of detected and suppressed errors, rerun with: -v ==29900== Use --track-origins=yes to see where uninitialised values come from ==29900== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from 4) On Wed, Jan 22, 2014 at 6:40 PM, Jed Brown wrote: > David Liu writes: > > > Hi, I'm running a very simple code, consisting of just PetscFinalize and > > PetscInitialize and nothing else. > > > > I'm running it with valgrind using the command > > "valgrind ./run" > > > > I also tried (as the petsc homepage suggests) > > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off > > > > For both cases, I get tons of error messages like > > "Conditional jump or move depends on uninitialised value(s)" > > "Use of uninitialised value of size 8" > > "Invalid read of size 8" > > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" > > You have to send the *exact and complete* output, not snippets. Are you > using Open MPI? Chances are this is in the stack somewhere because we > regularly test PETSc itself using valgrind. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Wed Jan 22 17:57:25 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 17:57:25 -0600 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: References: <87ob338u0t.fsf@jedbrown.org> Message-ID: On Wed, Jan 22, 2014 at 5:53 PM, David Liu wrote: > sure thing. Here's what I get when I directly run the executable (no MPI > if I understand correctly). If I do "mpirun -n 1 valgrind ./run", I get the > exact same thing. > As you can see, the problems are flagged in MPI and GotoBLAS. Matt > ==29900== Memcheck, a memory error detector > > ==29900== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et al. > > ==29900== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright info > > ==29900== Command: ./run > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0xACE64AF: ____strtoul_l_internal (strtol_l.c:438) > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x6E9811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0xACE6427: ____strtoul_l_internal (strtol_l.c:442) > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x6E9811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==29900== > > ==29900== Use of uninitialised value of size 8 > > ==29900== at 0xACE6465: ____strtoul_l_internal (strtol_l.c:466) > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x6E9811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==29900== > > ==29900== Invalid read of size 8 > > ==29900== at 0xAD378CD: _wordcopy_fwd_dest_aligned (wordcopy.c:205) > > ==29900== by 0xAD3156E: __GI_memmove (memmove.c:76) > > ==29900== by 0xAD38B7B: argz_insert (argz-insert.c:55) > > ==29900== by 0xA4405E5: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA4407FF: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA43FFC8: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA440F57: lt_dlforeachfile (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA447FCE: mca_base_component_find (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA448AC1: mca_base_components_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA463C44: opal_paffinity_base_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA439AD2: opal_init (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA1E6B3E: orte_init (in > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > ==29900== Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd > > ==29900== at 0x4C28BED: malloc (vg_replace_malloc.c:263) > > ==29900== by 0xA43F658: lt__malloc (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA44078E: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA43FFC8: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA440F57: lt_dlforeachfile (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA447FCE: mca_base_component_find (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA448AC1: mca_base_components_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA463C44: opal_paffinity_base_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA439AD2: opal_init (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA1E6B3E: orte_init (in > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== > > ==29900== Syscall param sched_setaffinity(mask) points to unaddressable > byte(s) > > ==29900== at 0xAD852F9: syscall (syscall.S:39) > > ==29900== by 0xFD75621: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xFD75A3C: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xFD76599: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xFD754AC: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xA463AEA: opal_paffinity_base_select (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA439B0D: opal_init (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA1E6B3E: orte_init (in > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== Address 0x0 is not stack'd, malloc'd or (recently) free'd > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0x9F5E578: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0x9F5E57C: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== > > ==29900== Syscall param writev(vector[...]) points to uninitialised byte(s) > > ==29900== at 0xAD81BE7: writev (writev.c:56) > > ==29900== by 0x11397E22: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > ==29900== by 0x11398C5C: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > ==29900== by 0x1139C2EB: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > ==29900== by 0x1118E7BD: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > > ==29900== by 0x1118EDB8: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > > ==29900== by 0x10D85AD8: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x10D854DE: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== Address 0x1815faf7 is 87 bytes inside a block of size 256 > alloc'd > > ==29900== at 0x4C28CCE: realloc (vg_replace_malloc.c:632) > > ==29900== by 0xA43ADB7: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA43B8CD: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0x10D85AAC: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x10D854DE: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== > > ==29900== > > ==29900== HEAP SUMMARY: > > ==29900== in use at exit: 258,198 bytes in 2,787 blocks > > ==29900== total heap usage: 11,718 allocs, 8,931 frees, 17,060,981 bytes > allocated > > ==29900== > > ==29900== LEAK SUMMARY: > > ==29900== definitely lost: 5,956 bytes in 55 blocks > > ==29900== indirectly lost: 3,722 bytes in 22 blocks > > ==29900== possibly lost: 0 bytes in 0 blocks > > ==29900== still reachable: 248,520 bytes in 2,710 blocks > > ==29900== suppressed: 0 bytes in 0 blocks > > ==29900== Rerun with --leak-check=full to see details of leaked memory > > ==29900== > > ==29900== For counts of detected and suppressed errors, rerun with: -v > > ==29900== Use --track-origins=yes to see where uninitialised values come > from > > ==29900== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from 4) > > > On Wed, Jan 22, 2014 at 6:40 PM, Jed Brown wrote: > >> David Liu writes: >> >> > Hi, I'm running a very simple code, consisting of just PetscFinalize and >> > PetscInitialize and nothing else. >> > >> > I'm running it with valgrind using the command >> > "valgrind ./run" >> > >> > I also tried (as the petsc homepage suggests) >> > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off >> > >> > For both cases, I get tons of error messages like >> > "Conditional jump or move depends on uninitialised value(s)" >> > "Use of uninitialised value of size 8" >> > "Invalid read of size 8" >> > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" >> >> You have to send the *exact and complete* output, not snippets. Are you >> using Open MPI? Chances are this is in the stack somewhere because we >> regularly test PETSc itself using valgrind. >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Wed Jan 22 17:57:48 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 16:57:48 -0700 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: References: <87ob338u0t.fsf@jedbrown.org> Message-ID: <87iotb8t8j.fsf@jedbrown.org> David Liu writes: > sure thing. Here's what I get when I directly run the executable (no MPI if > I understand correctly). No, you are linked to Open MPI and it is very noisy under Valgrind. Use MPICH if you want something tight. I don't know if the gotoblas noise has been fixed, but that project has evolved into OpenBLAS, which you may as well use since it is the maintained code base. http://www.openblas.net/ > If I do "mpirun -n 1 valgrind ./run", I get the exact same thing. > > ==29900== Memcheck, a memory error detector > > ==29900== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et al. > > ==29900== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright info > > ==29900== Command: ./run > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0xACE64AF: ____strtoul_l_internal (strtol_l.c:438) > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x6E9811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0xACE6427: ____strtoul_l_internal (strtol_l.c:442) > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x6E9811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==29900== > > ==29900== Use of uninitialised value of size 8 > > ==29900== at 0xACE6465: ____strtoul_l_internal (strtol_l.c:466) > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x6E9811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==29900== > > ==29900== Invalid read of size 8 > > ==29900== at 0xAD378CD: _wordcopy_fwd_dest_aligned (wordcopy.c:205) > > ==29900== by 0xAD3156E: __GI_memmove (memmove.c:76) > > ==29900== by 0xAD38B7B: argz_insert (argz-insert.c:55) > > ==29900== by 0xA4405E5: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA4407FF: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA43FFC8: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA440F57: lt_dlforeachfile (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA447FCE: mca_base_component_find (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA448AC1: mca_base_components_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA463C44: opal_paffinity_base_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA439AD2: opal_init (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA1E6B3E: orte_init (in > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > ==29900== Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd > > ==29900== at 0x4C28BED: malloc (vg_replace_malloc.c:263) > > ==29900== by 0xA43F658: lt__malloc (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA44078E: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA43FFC8: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA440F57: lt_dlforeachfile (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA447FCE: mca_base_component_find (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA448AC1: mca_base_components_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA463C44: opal_paffinity_base_open (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA439AD2: opal_init (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA1E6B3E: orte_init (in > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== > > ==29900== Syscall param sched_setaffinity(mask) points to unaddressable > byte(s) > > ==29900== at 0xAD852F9: syscall (syscall.S:39) > > ==29900== by 0xFD75621: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xFD75A3C: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xFD76599: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xFD754AC: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > ==29900== by 0xA463AEA: opal_paffinity_base_select (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA439B0D: opal_init (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA1E6B3E: orte_init (in > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== Address 0x0 is not stack'd, malloc'd or (recently) free'd > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0x9F5E578: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== > > ==29900== Conditional jump or move depends on uninitialised value(s) > > ==29900== at 0x9F5E57C: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== > > ==29900== Syscall param writev(vector[...]) points to uninitialised byte(s) > > ==29900== at 0xAD81BE7: writev (writev.c:56) > > ==29900== by 0x11397E22: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > ==29900== by 0x11398C5C: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > ==29900== by 0x1139C2EB: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > ==29900== by 0x1118E7BD: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > > ==29900== by 0x1118EDB8: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > > ==29900== by 0x10D85AD8: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x10D854DE: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== Address 0x1815faf7 is 87 bytes inside a block of size 256 alloc'd > > ==29900== at 0x4C28CCE: realloc (vg_replace_malloc.c:632) > > ==29900== by 0xA43ADB7: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0xA43B8CD: ??? (in > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > ==29900== by 0x10D85AAC: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x10D854DE: ??? (in > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > ==29900== by 0x400CC6: main (prog.c:5) > > ==29900== > > ==29900== > > ==29900== HEAP SUMMARY: > > ==29900== in use at exit: 258,198 bytes in 2,787 blocks > > ==29900== total heap usage: 11,718 allocs, 8,931 frees, 17,060,981 bytes > allocated > > ==29900== > > ==29900== LEAK SUMMARY: > > ==29900== definitely lost: 5,956 bytes in 55 blocks > > ==29900== indirectly lost: 3,722 bytes in 22 blocks > > ==29900== possibly lost: 0 bytes in 0 blocks > > ==29900== still reachable: 248,520 bytes in 2,710 blocks > > ==29900== suppressed: 0 bytes in 0 blocks > > ==29900== Rerun with --leak-check=full to see details of leaked memory > > ==29900== > > ==29900== For counts of detected and suppressed errors, rerun with: -v > > ==29900== Use --track-origins=yes to see where uninitialised values come > from > > ==29900== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from 4) > > > On Wed, Jan 22, 2014 at 6:40 PM, Jed Brown wrote: > >> David Liu writes: >> >> > Hi, I'm running a very simple code, consisting of just PetscFinalize and >> > PetscInitialize and nothing else. >> > >> > I'm running it with valgrind using the command >> > "valgrind ./run" >> > >> > I also tried (as the petsc homepage suggests) >> > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off >> > >> > For both cases, I get tons of error messages like >> > "Conditional jump or move depends on uninitialised value(s)" >> > "Use of uninitialised value of size 8" >> > "Invalid read of size 8" >> > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" >> >> You have to send the *exact and complete* output, not snippets. Are you >> using Open MPI? Chances are this is in the stack somewhere because we >> regularly test PETSc itself using valgrind. >> -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Wed Jan 22 18:28:31 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 18:28:31 -0600 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix In-Reply-To: <56D054AF2E93E044AC1D2685709D2868CA00A2606B@KIT-MSX-07.kit.edu> References: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu>, <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> <56D054AF2E93E044AC1D2685709D2868CA00A26069@KIT-MSX-07.kit.edu>, <56D054AF2E93E044AC1D2685709D2868CA00A2606B@KIT-MSX-07.kit.edu> Message-ID: <68BA05D1-8122-4A62-B08E-8ACF645AEFCC@mcs.anl.gov> Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end This is a very different problem. Something on your cluster is deciding to kill your job. Perhaps you are not suppose to be running there? The matrix is very small so it is not likely due to using too much memory. You need to talk directly with the system administrator for that systems and show him/her the message above. It is not a bug in PETSc. Barry I ran with 50-60 processes under valgrind and it ran fine for all cases. On Jan 22, 2014, at 5:04 PM, Xiao, Jianjun (IKET) wrote: > I changed the code as you suggested, and I updated the nightly tarball. > > Unfortunately, I still got the error below with number of processors, say 22, 55, 61, 62 ... on the Linux cluster. And I think the number might be different on your machine. Could you please try other numbers, say 50~63? > > It seems the errors could be from my side. Could you please give me some idea on how to debug such a problem? > > Thank you. > > [60]PETSC ERROR: ------------------------------------------------------------------------ > [60]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end > [60]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [60]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[60]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors > [60]PETSC ERROR: likely location of problem given in stack below > [60]PETSC ERROR: --------------------- Stack Frames ------------------------------------ > [60]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, > [60]PETSC ERROR: INSTEAD the line number of the start of the function > [60]PETSC ERROR: is given. > [60]PETSC ERROR: [60] MatAssemblyBegin_MPISBAIJ line 483 /home/xiao/Local/petsc-dev-debug/src/mat/impls/sbaij/mpi/mpisbaij.c > [60]PETSC ERROR: [60] MatAssemblyBegin line 4854 /home/xiao/Local/petsc-dev-debug/src/mat/interface/matrix.c > [60]PETSC ERROR: [60] DMCreateMatrix_DA_3d_MPISBAIJ line 1679 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c > [60]PETSC ERROR: [60] DMCreateMatrix_DA line 625 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c > [60]PETSC ERROR: [60] DMCreateMatrix line 961 /home/xiao/Local/petsc-dev-debug/src/dm/interface/dm.c > [60]PETSC ERROR: --------------------- Error Message ------------------------------------ > [60]PETSC ERROR: Signal received! > [60]PETSC ERROR: ------------------------------------------------------------------------ > [60]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2332-g54f71ec GIT Date: 2014-01-20 14:12:11 -0700 > [60]PETSC ERROR: See docs/changes/index.html for recent updates. > [60]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [60]PETSC ERROR: See docs/index.html for manual pages. > [60]PETSC ERROR: ------------------------------------------------------------------------ > [60]PETSC ERROR: ./ex44f on a linux-gnu named cluster08 by xiao Wed Jan 22 23:51:36 2014 > [60]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [60]PETSC ERROR: Configure run at Wed Jan 22 23:45:50 2014 > [60]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [60]PETSC ERROR: ------------------------------------------------------------------------ > > JJ > _________ > _______________________________ > From: Barry Smith [bsmith at mcs.anl.gov] > Sent: Wednesday, January 22, 2014 9:29 PM > To: Xiao, Jianjun (IKET) > Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov > Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix > > There was an error in your code; because you did not use implicit none in the main program it did not tell you > CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & > 1 > Error: Symbol 'dmda_boundary_none' at (1) has no IMPLICIT type > ex1f.F90:14.26: > > & DMDA_STENCIL_BOX,-1002,-3,-3,PETSC_DECIDE,PETSC_DECIDE,& > 1 > Error: Symbol 'dmda_stencil_box' at (1) has no IMPLICIT type > > > I fixed the code by adding use petscdmda and the implicit none and it ran without error on those number of processes on both a MacOS and a Linux system > > program main ! Solves the linear system J x = f > use petscksp; use petscdm; use petscdmda > implicit none > #include > > Please let me know if you still have a problem. > > Barry > > > On Jan 22, 2014, at 5:15 AM, Xiao, Jianjun (IKET) wrote: > >> Dear Barry, >> >> I modified ex44f.F90, and ran the case on my 64-processors cluster. Please find the file in the attachment. >> >> I tried various number of processors. It seems that for number of processors: 1, 2, 3, 4, 5, 6, 7, 8, 16, 32 and 64 it works fine. For numbers such as 20, 30, 31, 60, 61 and 62, I got the error below. This time, even for MATMPIBAIJ I got error. I did not try all the numbers between 1-64. If you need more information, please let me know. >> >> Thank you for your help. >> >> Best regards >> JJ >> >> >> For MATMPISBAIJ, I got the error like this: >> >> [55]PETSC ERROR: [55] MatAssemblyBegin_MPISBAIJ line 483 src/mat/impls/sbaij/mpi/mpisbaij.c >> [55]PETSC ERROR: [55] MatAssemblyBegin line 4865 src/mat/interface/matrix.c >> [55]PETSC ERROR: [55] DMCreateMatrix_DA_3d_MPISBAIJ line 1694 src/dm/impls/da/fdda.c >> [55]PETSC ERROR: [55] DMCreateMatrix_DA line 626 src/dm/impls/da/fdda.c >> [55]PETSC ERROR: [55] DMCreateMatrix line 1002 src/dm/interface/dm.c >> [55]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [55]PETSC ERROR: Signal received! >> [55]PETSC ERROR: ------------------------------------------------------------------------ >> [55]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> [55]PETSC ERROR: See docs/changes/index.html for recent updates. >> [55]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [55]PETSC ERROR: See docs/index.html for manual pages. >> [55]PETSC ERROR: ------------------------------------------------------------------------ >> [55]PETSC ERROR: ./ex44f on a linux-gnu named cluster07 by xiao Wed Jan 22 11:54:32 2014 >> [55]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >> [55]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >> [55]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> [55]PETSC ERROR: ------------------------------------------------------------------------ >> [55]PETSC ERROR: User provided function() line 0 in unknown file >> >> >> For MATMPIBAIJ, I got the error like this: >> >> [44]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [44]PETSC ERROR: Argument out of range! >> [44]PETSC ERROR: Trying to set preallocation for row 6678 less than first local row 6714! >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> [44]PETSC ERROR: See docs/changes/index.html for recent updates. >> [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [44]PETSC ERROR: See docs/index.html for manual pages. >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 >> [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >> [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >> [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: DMCreateMatrix_DA_3d_MPIBAIJ() line 1508 in src/dm/impls/da/fdda.c >> [44]PETSC ERROR: DMCreateMatrix_DA() line 771 in src/dm/impls/da/fdda.c >> [44]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >> [44]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [44]PETSC ERROR: Corrupt argument: >> see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind! >> [44]PETSC ERROR: Invalid Pointer to Object: Parameter # 1! >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> [44]PETSC ERROR: See docs/changes/index.html for recent updates. >> [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [44]PETSC ERROR: See docs/index.html for manual pages. >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 >> [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >> [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >> [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: MatDestroy() line 1029 in src/mat/interface/matrix.c >> >> ________________________________________ >> From: Barry Smith [bsmith at mcs.anl.gov] >> Sent: Monday, January 20, 2014 8:37 PM >> To: Xiao, Jianjun (IKET) >> Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov >> Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix >> >> Thanks for reporting the problem. This is our error. Could you please send us the code that generates the error so we can reproduce the problem, determine the cause and fix it. >> >> Barry >> >> We need to know the exact values of imax,jmax, kmax etc to reproduce the problem. >> >> >> >> On Jan 20, 2014, at 9:33 AM, Xiao, Jianjun (IKET) wrote: >> >>> Dear developers, >>> >>> I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. >>> >>> CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & >>> & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & >>> & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& >>> & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & >>> & PETSC_NULL_INTEGER,da,ierr) >>> >>> CALL DMSetMatType(da,MATMPISBAIJ,ierr) >>> CALL DMCreateMatrix(da,mat,ierr) >>> >>> A cluster with 64 processors was used for the testing. >>> >>> When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. >>> >>> For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. >>> >>> When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. >>> >>> >>> mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ >>> mpirun: [25]PETSC ERROR: Argument out of range! >>> mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! >>> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >>> mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >>> mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. >>> mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. >>> mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >>> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c >>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c >>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c >>> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c >>> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c >>> mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >>> >>> Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. >>> >>> CALL DMSetMatType(da,MATMPIBAIJ,ierr) >>> CALL DMCreateMatrix(da,gfmat,ierr) >>> >>> Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. >>> >>> JJ >> >> > > From bsmith at mcs.anl.gov Wed Jan 22 18:32:47 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 18:32:47 -0600 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <52E04EA8.9080603@gmail.com> References: <52E0260F.8050902@gmail.com> <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> <52E04EA8.9080603@gmail.com> Message-ID: <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> What ODE integrator are you using? Your own? One in PETSc? You could just use -pc_type lu and the sparse format right? Or is that too slow? Barry Jed and Emil, do we have any integrators that keep the time-step small due to slow convergence of Newton in TS? On Jan 22, 2014, at 5:05 PM, Danyang Su wrote: > On 22/01/2014 1:42 PM, Barry Smith wrote: >> Linear solvers based on ILU will behave very differently when extra zeros are kept in the matrix; they generally converge much faster because the ILU behaves more like an LU (especially in 1d). So first run one 1 process with dense and sparse formats and -pc_type lu; do they behave differently? (they pretty much shouldn?t). > It does not behave differently with the option '-pc_type lu'. >> >> Next run the sparse format version with -ksp_monitor_true_residual and see how the solver is converging compared to the dense format version. > The converging is quite different. > ---Sparse format > 0 KSP preconditioned resid norm 5.242977405897e-004 true resid norm 3.927123490361e-006 ||r(i)||/||b|| 1.000000000000e+000 > 1 KSP preconditioned resid norm 6.118580743238e-006 true resid norm 2.917502282301e-008 ||r(i)||/||b|| 7.429107562985e-003 > 2 KSP preconditioned resid norm 9.271130393116e-007 true resid norm 9.649272009380e-009 ||r(i)||/||b|| 2.457083927476e-003 > 3 KSP preconditioned resid norm 5.812641606714e-009 true resid norm 4.073757311146e-011 ||r(i)||/||b|| 1.037338734355e-005 > 4 KSP preconditioned resid norm 1.992914862465e-010 true resid norm 1.261636843933e-012 ||r(i)||/||b|| 3.212623303112e-007 > 5 KSP preconditioned resid norm 1.422122839379e-012 true resid norm 2.393761421284e-014 ||r(i)||/||b|| 6.095457469466e-009 > ---Dense format > 0 KSP preconditioned resid norm 2.948306125658e+000 true resid norm 2.436662454678e-004 ||r(i)||/||b|| 1.000000000000e+000 > 1 KSP preconditioned resid norm 9.798852520841e-015 true resid norm 1.267168968393e-018 ||r(i)||/||b|| 5.200428832315e-015 > > The convergence seems difficult for the sparse format and the number of outer newton iteration is usually much larger than dense format. > So the time step cannot increase due to this. > > Thanks, > > Danyang >> >> Barry >> >> On Jan 22, 2014, at 2:11 PM, Danyang Su wrote: >> >>> Dear All, >>> >>> I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). >>> >>> I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. >>> >>> Does anyone run into this problem before? >>> >>> Thanks and regards, >>> >>> Danyang >>> > From jed at jedbrown.org Wed Jan 22 18:43:29 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 22 Jan 2014 17:43:29 -0700 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> References: <52E0260F.8050902@gmail.com> <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> <52E04EA8.9080603@gmail.com> <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> Message-ID: <874n4v8r4e.fsf@jedbrown.org> Barry Smith writes: > Jed and Emil, do we have any integrators that keep the time-step small due to slow convergence of Newton in TS? Anything that uses TSAdapt will cut the step back if SNES fails. If you set -snes_max_it 5, it will avoid doing 50 iterations and just shorten the step. Perhaps combine that with -ts_adapt_basic_clip 0.1,1.5 so that step size is increased conservatively. (Default is 0.1,10, so it will increase by 10x if the local error estimate thinks accuracy would be maintained with that.) We don't have something that looks at the number of iterations and proactively adjusts the step. It would be a fine addition to TSAdapt. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From danyang.su at gmail.com Wed Jan 22 19:15:14 2014 From: danyang.su at gmail.com (Danyang Su) Date: Wed, 22 Jan 2014 17:15:14 -0800 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> References: <52E0260F.8050902@gmail.com> <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> <52E04EA8.9080603@gmail.com> <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> Message-ID: <52E06D22.2080009@gmail.com> On 22/01/2014 4:32 PM, Barry Smith wrote: > What ODE integrator are you using? Your own? One in PETSc? I use my own integrator and PETSc is used as KSP solver. I may need to test more cases especially 2D cases to see the behavior of dense format and sparse format. > > You could just use -pc_type lu and the sparse format right? Or is that too slow? > > Barry > > Jed and Emil, do we have any integrators that keep the time-step small due to slow convergence of Newton in TS? > > > On Jan 22, 2014, at 5:05 PM, Danyang Su wrote: > >> On 22/01/2014 1:42 PM, Barry Smith wrote: >>> Linear solvers based on ILU will behave very differently when extra zeros are kept in the matrix; they generally converge much faster because the ILU behaves more like an LU (especially in 1d). So first run one 1 process with dense and sparse formats and -pc_type lu; do they behave differently? (they pretty much shouldn?t). >> It does not behave differently with the option '-pc_type lu'. >>> Next run the sparse format version with -ksp_monitor_true_residual and see how the solver is converging compared to the dense format version. >> The converging is quite different. >> ---Sparse format >> 0 KSP preconditioned resid norm 5.242977405897e-004 true resid norm 3.927123490361e-006 ||r(i)||/||b|| 1.000000000000e+000 >> 1 KSP preconditioned resid norm 6.118580743238e-006 true resid norm 2.917502282301e-008 ||r(i)||/||b|| 7.429107562985e-003 >> 2 KSP preconditioned resid norm 9.271130393116e-007 true resid norm 9.649272009380e-009 ||r(i)||/||b|| 2.457083927476e-003 >> 3 KSP preconditioned resid norm 5.812641606714e-009 true resid norm 4.073757311146e-011 ||r(i)||/||b|| 1.037338734355e-005 >> 4 KSP preconditioned resid norm 1.992914862465e-010 true resid norm 1.261636843933e-012 ||r(i)||/||b|| 3.212623303112e-007 >> 5 KSP preconditioned resid norm 1.422122839379e-012 true resid norm 2.393761421284e-014 ||r(i)||/||b|| 6.095457469466e-009 >> ---Dense format >> 0 KSP preconditioned resid norm 2.948306125658e+000 true resid norm 2.436662454678e-004 ||r(i)||/||b|| 1.000000000000e+000 >> 1 KSP preconditioned resid norm 9.798852520841e-015 true resid norm 1.267168968393e-018 ||r(i)||/||b|| 5.200428832315e-015 >> >> The convergence seems difficult for the sparse format and the number of outer newton iteration is usually much larger than dense format. >> So the time step cannot increase due to this. >> >> Thanks, >> >> Danyang >>> Barry >>> >>> On Jan 22, 2014, at 2:11 PM, Danyang Su wrote: >>> >>>> Dear All, >>>> >>>> I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). >>>> >>>> I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. >>>> >>>> Does anyone run into this problem before? >>>> >>>> Thanks and regards, >>>> >>>> Danyang >>>> From daveliu at mit.edu Wed Jan 22 19:22:14 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 22 Jan 2014 20:22:14 -0500 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: <87iotb8t8j.fsf@jedbrown.org> References: <87ob338u0t.fsf@jedbrown.org> <87iotb8t8j.fsf@jedbrown.org> Message-ID: Okay, I reinstalled Petsc with Mpich, and the list of errors is a lot shorter: It looks like I already have openblas here too. Is this the best I can get? ==22666== Memcheck, a memory error detector ==22666== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et al. ==22666== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright info ==22666== Command: ./run ==22666== ==22666== Conditional jump or move depends on uninitialised value(s) ==22666== at 0xAE774AF: ____strtoul_l_internal (strtol_l.c:438) ==22666== by 0x7442EE2: gotoblas_affinity_init (in /usr/lib/openblas-base/libopenblas.so.0) ==22666== by 0x711811A: gotoblas_init (in /usr/lib/openblas-base/libopenblas.so.0) ==22666== by 0x400DF7F: call_init (dl-init.c:85) ==22666== by 0x400E076: _dl_init (dl-init.c:134) ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) ==22666== ==22666== Conditional jump or move depends on uninitialised value(s) ==22666== at 0xAE77427: ____strtoul_l_internal (strtol_l.c:442) ==22666== by 0x7442EE2: gotoblas_affinity_init (in /usr/lib/openblas-base/libopenblas.so.0) ==22666== by 0x711811A: gotoblas_init (in /usr/lib/openblas-base/libopenblas.so.0) ==22666== by 0x400DF7F: call_init (dl-init.c:85) ==22666== by 0x400E076: _dl_init (dl-init.c:134) ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) ==22666== ==22666== Use of uninitialised value of size 8 ==22666== at 0xAE77465: ____strtoul_l_internal (strtol_l.c:466) ==22666== by 0x7442EE2: gotoblas_affinity_init (in /usr/lib/openblas-base/libopenblas.so.0) ==22666== by 0x711811A: gotoblas_init (in /usr/lib/openblas-base/libopenblas.so.0) ==22666== by 0x400DF7F: call_init (dl-init.c:85) ==22666== by 0x400E076: _dl_init (dl-init.c:134) ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) ==22666== ==22666== ==22666== HEAP SUMMARY: ==22666== in use at exit: 0 bytes in 0 blocks ==22666== total heap usage: 222 allocs, 222 frees, 117,046 bytes allocated ==22666== ==22666== All heap blocks were freed -- no leaks are possible ==22666== ==22666== For counts of detected and suppressed errors, rerun with: -v ==22666== Use --track-origins=yes to see where uninitialised values come from ==22666== ERROR SUMMARY: 6 errors from 3 contexts (suppressed: 4 from 4) On Wed, Jan 22, 2014 at 6:57 PM, Jed Brown wrote: > David Liu writes: > > > sure thing. Here's what I get when I directly run the executable (no MPI > if > > I understand correctly). > > No, you are linked to Open MPI and it is very noisy under Valgrind. Use > MPICH if you want something tight. I don't know if the gotoblas noise > has been fixed, but that project has evolved into OpenBLAS, which you > may as well use since it is the maintained code base. > > http://www.openblas.net/ > > > If I do "mpirun -n 1 valgrind ./run", I get the exact same thing. > > > > ==29900== Memcheck, a memory error detector > > > > ==29900== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et al. > > > > ==29900== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright > info > > > > ==29900== Command: ./run > > > > ==29900== > > > > ==29900== Conditional jump or move depends on uninitialised value(s) > > > > ==29900== at 0xACE64AF: ____strtoul_l_internal (strtol_l.c:438) > > > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==29900== by 0x6E9811A: gotoblas_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > > > ==29900== > > > > ==29900== Conditional jump or move depends on uninitialised value(s) > > > > ==29900== at 0xACE6427: ____strtoul_l_internal (strtol_l.c:442) > > > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==29900== by 0x6E9811A: gotoblas_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > > > ==29900== > > > > ==29900== Use of uninitialised value of size 8 > > > > ==29900== at 0xACE6465: ____strtoul_l_internal (strtol_l.c:466) > > > > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==29900== by 0x6E9811A: gotoblas_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > > > > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > > > > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > > > ==29900== > > > > ==29900== Invalid read of size 8 > > > > ==29900== at 0xAD378CD: _wordcopy_fwd_dest_aligned (wordcopy.c:205) > > > > ==29900== by 0xAD3156E: __GI_memmove (memmove.c:76) > > > > ==29900== by 0xAD38B7B: argz_insert (argz-insert.c:55) > > > > ==29900== by 0xA4405E5: ??? (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA4407FF: ??? (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA43FFC8: ??? (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA440F57: lt_dlforeachfile (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA447FCE: mca_base_component_find (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA448AC1: mca_base_components_open (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA463C44: opal_paffinity_base_open (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA439AD2: opal_init (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA1E6B3E: orte_init (in > > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > > > ==29900== Address 0xc15a998 is 40 bytes inside a block of size 47 > alloc'd > > > > ==29900== at 0x4C28BED: malloc (vg_replace_malloc.c:263) > > > > ==29900== by 0xA43F658: lt__malloc (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA44078E: ??? (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA43FFC8: ??? (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA440F57: lt_dlforeachfile (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA447FCE: mca_base_component_find (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA448AC1: mca_base_components_open (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA463C44: opal_paffinity_base_open (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA439AD2: opal_init (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA1E6B3E: orte_init (in > > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > > > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== > > > > ==29900== Syscall param sched_setaffinity(mask) points to unaddressable > > byte(s) > > > > ==29900== at 0xAD852F9: syscall (syscall.S:39) > > > > ==29900== by 0xFD75621: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > > > ==29900== by 0xFD75A3C: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > > > ==29900== by 0xFD76599: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > > > ==29900== by 0xFD754AC: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > > > > ==29900== by 0xA463AEA: opal_paffinity_base_select (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA439B0D: opal_init (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA1E6B3E: orte_init (in > > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > > > > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > > > ==29900== by 0x400CC6: main (prog.c:5) > > > > ==29900== Address 0x0 is not stack'd, malloc'd or (recently) free'd > > > > ==29900== > > > > ==29900== Conditional jump or move depends on uninitialised value(s) > > > > ==29900== at 0x9F5E578: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > > > ==29900== by 0x400CC6: main (prog.c:5) > > > > ==29900== > > > > ==29900== Conditional jump or move depends on uninitialised value(s) > > > > ==29900== at 0x9F5E57C: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > > > ==29900== by 0x400CC6: main (prog.c:5) > > > > ==29900== > > > > ==29900== Syscall param writev(vector[...]) points to uninitialised > byte(s) > > > > ==29900== at 0xAD81BE7: writev (writev.c:56) > > > > ==29900== by 0x11397E22: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > > > ==29900== by 0x11398C5C: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > > > ==29900== by 0x1139C2EB: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > > > > ==29900== by 0x1118E7BD: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > > > > ==29900== by 0x1118EDB8: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > > > > ==29900== by 0x10D85AD8: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > > > ==29900== by 0x10D854DE: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > > > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > > > ==29900== by 0x400CC6: main (prog.c:5) > > > > ==29900== Address 0x1815faf7 is 87 bytes inside a block of size 256 > alloc'd > > > > ==29900== at 0x4C28CCE: realloc (vg_replace_malloc.c:632) > > > > ==29900== by 0xA43ADB7: ??? (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0xA43B8CD: ??? (in > > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > > > > ==29900== by 0x10D85AAC: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > > > ==29900== by 0x10D854DE: ??? (in > > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > > > > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > > > > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > > > > ==29900== by 0x400CC6: main (prog.c:5) > > > > ==29900== > > > > ==29900== > > > > ==29900== HEAP SUMMARY: > > > > ==29900== in use at exit: 258,198 bytes in 2,787 blocks > > > > ==29900== total heap usage: 11,718 allocs, 8,931 frees, 17,060,981 > bytes > > allocated > > > > ==29900== > > > > ==29900== LEAK SUMMARY: > > > > ==29900== definitely lost: 5,956 bytes in 55 blocks > > > > ==29900== indirectly lost: 3,722 bytes in 22 blocks > > > > ==29900== possibly lost: 0 bytes in 0 blocks > > > > ==29900== still reachable: 248,520 bytes in 2,710 blocks > > > > ==29900== suppressed: 0 bytes in 0 blocks > > > > ==29900== Rerun with --leak-check=full to see details of leaked memory > > > > ==29900== > > > > ==29900== For counts of detected and suppressed errors, rerun with: -v > > > > ==29900== Use --track-origins=yes to see where uninitialised values come > > from > > > > ==29900== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from > 4) > > > > > > On Wed, Jan 22, 2014 at 6:40 PM, Jed Brown wrote: > > > >> David Liu writes: > >> > >> > Hi, I'm running a very simple code, consisting of just PetscFinalize > and > >> > PetscInitialize and nothing else. > >> > > >> > I'm running it with valgrind using the command > >> > "valgrind ./run" > >> > > >> > I also tried (as the petsc homepage suggests) > >> > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off > >> > > >> > For both cases, I get tons of error messages like > >> > "Conditional jump or move depends on uninitialised value(s)" > >> > "Use of uninitialised value of size 8" > >> > "Invalid read of size 8" > >> > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" > >> > >> You have to send the *exact and complete* output, not snippets. Are you > >> using Open MPI? Chances are this is in the stack somewhere because we > >> regularly test PETSc itself using valgrind. > >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Jan 22 19:28:11 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 19:28:11 -0600 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <52E06D22.2080009@gmail.com> References: <52E0260F.8050902@gmail.com> <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> <52E04EA8.9080603@gmail.com> <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> <52E06D22.2080009@gmail.com> Message-ID: With a 1d problem likely the sparse format and -pc_type lu is the way to go. Barry On Jan 22, 2014, at 7:15 PM, Danyang Su wrote: > On 22/01/2014 4:32 PM, Barry Smith wrote: >> What ODE integrator are you using? Your own? One in PETSc? > I use my own integrator and PETSc is used as KSP solver. I may need to test more cases especially 2D cases to see the behavior of dense format and sparse format. >> >> You could just use -pc_type lu and the sparse format right? Or is that too slow? >> >> Barry >> >> Jed and Emil, do we have any integrators that keep the time-step small due to slow convergence of Newton in TS? >> >> >> On Jan 22, 2014, at 5:05 PM, Danyang Su wrote: >> >>> On 22/01/2014 1:42 PM, Barry Smith wrote: >>>> Linear solvers based on ILU will behave very differently when extra zeros are kept in the matrix; they generally converge much faster because the ILU behaves more like an LU (especially in 1d). So first run one 1 process with dense and sparse formats and -pc_type lu; do they behave differently? (they pretty much shouldn?t). >>> It does not behave differently with the option '-pc_type lu'. >>>> Next run the sparse format version with -ksp_monitor_true_residual and see how the solver is converging compared to the dense format version. >>> The converging is quite different. >>> ---Sparse format >>> 0 KSP preconditioned resid norm 5.242977405897e-004 true resid norm 3.927123490361e-006 ||r(i)||/||b|| 1.000000000000e+000 >>> 1 KSP preconditioned resid norm 6.118580743238e-006 true resid norm 2.917502282301e-008 ||r(i)||/||b|| 7.429107562985e-003 >>> 2 KSP preconditioned resid norm 9.271130393116e-007 true resid norm 9.649272009380e-009 ||r(i)||/||b|| 2.457083927476e-003 >>> 3 KSP preconditioned resid norm 5.812641606714e-009 true resid norm 4.073757311146e-011 ||r(i)||/||b|| 1.037338734355e-005 >>> 4 KSP preconditioned resid norm 1.992914862465e-010 true resid norm 1.261636843933e-012 ||r(i)||/||b|| 3.212623303112e-007 >>> 5 KSP preconditioned resid norm 1.422122839379e-012 true resid norm 2.393761421284e-014 ||r(i)||/||b|| 6.095457469466e-009 >>> ---Dense format >>> 0 KSP preconditioned resid norm 2.948306125658e+000 true resid norm 2.436662454678e-004 ||r(i)||/||b|| 1.000000000000e+000 >>> 1 KSP preconditioned resid norm 9.798852520841e-015 true resid norm 1.267168968393e-018 ||r(i)||/||b|| 5.200428832315e-015 >>> >>> The convergence seems difficult for the sparse format and the number of outer newton iteration is usually much larger than dense format. >>> So the time step cannot increase due to this. >>> >>> Thanks, >>> >>> Danyang >>>> Barry >>>> >>>> On Jan 22, 2014, at 2:11 PM, Danyang Su wrote: >>>> >>>>> Dear All, >>>>> >>>>> I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). >>>>> >>>>> I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. >>>>> >>>>> Does anyone run into this problem before? >>>>> >>>>> Thanks and regards, >>>>> >>>>> Danyang >>>>> > From knepley at gmail.com Wed Jan 22 19:29:29 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 22 Jan 2014 19:29:29 -0600 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: References: <87ob338u0t.fsf@jedbrown.org> <87iotb8t8j.fsf@jedbrown.org> Message-ID: On Wed, Jan 22, 2014 at 7:22 PM, David Liu wrote: > Okay, I reinstalled Petsc with Mpich, and the list of errors is a lot > shorter: It looks like I already have openblas here too. Is this the best I > can get? > The common solution is to put these in a valgrind suppressions file. Matt > ==22666== Memcheck, a memory error detector > > ==22666== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et al. > > ==22666== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright info > > ==22666== Command: ./run > > ==22666== > > ==22666== Conditional jump or move depends on uninitialised value(s) > > ==22666== at 0xAE774AF: ____strtoul_l_internal (strtol_l.c:438) > > ==22666== by 0x7442EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==22666== by 0x711811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==22666== by 0x400DF7F: call_init (dl-init.c:85) > > ==22666== by 0x400E076: _dl_init (dl-init.c:134) > > ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==22666== > > ==22666== Conditional jump or move depends on uninitialised value(s) > > ==22666== at 0xAE77427: ____strtoul_l_internal (strtol_l.c:442) > > ==22666== by 0x7442EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==22666== by 0x711811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==22666== by 0x400DF7F: call_init (dl-init.c:85) > > ==22666== by 0x400E076: _dl_init (dl-init.c:134) > > ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==22666== > > ==22666== Use of uninitialised value of size 8 > > ==22666== at 0xAE77465: ____strtoul_l_internal (strtol_l.c:466) > > ==22666== by 0x7442EE2: gotoblas_affinity_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==22666== by 0x711811A: gotoblas_init (in > /usr/lib/openblas-base/libopenblas.so.0) > > ==22666== by 0x400DF7F: call_init (dl-init.c:85) > > ==22666== by 0x400E076: _dl_init (dl-init.c:134) > > ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > ==22666== > > ==22666== > > ==22666== HEAP SUMMARY: > > ==22666== in use at exit: 0 bytes in 0 blocks > > ==22666== total heap usage: 222 allocs, 222 frees, 117,046 bytes > allocated > > ==22666== > > ==22666== All heap blocks were freed -- no leaks are possible > > ==22666== > > ==22666== For counts of detected and suppressed errors, rerun with: -v > > ==22666== Use --track-origins=yes to see where uninitialised values come > from > > ==22666== ERROR SUMMARY: 6 errors from 3 contexts (suppressed: 4 from 4) > > > On Wed, Jan 22, 2014 at 6:57 PM, Jed Brown wrote: > >> David Liu writes: >> >> > sure thing. Here's what I get when I directly run the executable (no >> MPI if >> > I understand correctly). >> >> No, you are linked to Open MPI and it is very noisy under Valgrind. Use >> MPICH if you want something tight. I don't know if the gotoblas noise >> has been fixed, but that project has evolved into OpenBLAS, which you >> may as well use since it is the maintained code base. >> >> http://www.openblas.net/ >> >> > If I do "mpirun -n 1 valgrind ./run", I get the exact same thing. >> > >> > ==29900== Memcheck, a memory error detector >> > >> > ==29900== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et >> al. >> > >> > ==29900== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright >> info >> > >> > ==29900== Command: ./run >> > >> > ==29900== >> > >> > ==29900== Conditional jump or move depends on uninitialised value(s) >> > >> > ==29900== at 0xACE64AF: ____strtoul_l_internal (strtol_l.c:438) >> > >> > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in >> > /usr/lib/openblas-base/libopenblas.so.0) >> > >> > ==29900== by 0x6E9811A: gotoblas_init (in >> > /usr/lib/openblas-base/libopenblas.so.0) >> > >> > ==29900== by 0x400DF7F: call_init (dl-init.c:85) >> > >> > ==29900== by 0x400E076: _dl_init (dl-init.c:134) >> > >> > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) >> > >> > ==29900== >> > >> > ==29900== Conditional jump or move depends on uninitialised value(s) >> > >> > ==29900== at 0xACE6427: ____strtoul_l_internal (strtol_l.c:442) >> > >> > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in >> > /usr/lib/openblas-base/libopenblas.so.0) >> > >> > ==29900== by 0x6E9811A: gotoblas_init (in >> > /usr/lib/openblas-base/libopenblas.so.0) >> > >> > ==29900== by 0x400DF7F: call_init (dl-init.c:85) >> > >> > ==29900== by 0x400E076: _dl_init (dl-init.c:134) >> > >> > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) >> > >> > ==29900== >> > >> > ==29900== Use of uninitialised value of size 8 >> > >> > ==29900== at 0xACE6465: ____strtoul_l_internal (strtol_l.c:466) >> > >> > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in >> > /usr/lib/openblas-base/libopenblas.so.0) >> > >> > ==29900== by 0x6E9811A: gotoblas_init (in >> > /usr/lib/openblas-base/libopenblas.so.0) >> > >> > ==29900== by 0x400DF7F: call_init (dl-init.c:85) >> > >> > ==29900== by 0x400E076: _dl_init (dl-init.c:134) >> > >> > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) >> > >> > ==29900== >> > >> > ==29900== Invalid read of size 8 >> > >> > ==29900== at 0xAD378CD: _wordcopy_fwd_dest_aligned (wordcopy.c:205) >> > >> > ==29900== by 0xAD3156E: __GI_memmove (memmove.c:76) >> > >> > ==29900== by 0xAD38B7B: argz_insert (argz-insert.c:55) >> > >> > ==29900== by 0xA4405E5: ??? (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA4407FF: ??? (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA43FFC8: ??? (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA440F57: lt_dlforeachfile (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA447FCE: mca_base_component_find (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA448AC1: mca_base_components_open (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA463C44: opal_paffinity_base_open (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA439AD2: opal_init (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA1E6B3E: orte_init (in >> > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) >> > >> > ==29900== Address 0xc15a998 is 40 bytes inside a block of size 47 >> alloc'd >> > >> > ==29900== at 0x4C28BED: malloc (vg_replace_malloc.c:263) >> > >> > ==29900== by 0xA43F658: lt__malloc (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA44078E: ??? (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA43FFC8: ??? (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA440F57: lt_dlforeachfile (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA447FCE: mca_base_component_find (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA448AC1: mca_base_components_open (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA463C44: opal_paffinity_base_open (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA439AD2: opal_init (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA1E6B3E: orte_init (in >> > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) >> > >> > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== >> > >> > ==29900== Syscall param sched_setaffinity(mask) points to unaddressable >> > byte(s) >> > >> > ==29900== at 0xAD852F9: syscall (syscall.S:39) >> > >> > ==29900== by 0xFD75621: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) >> > >> > ==29900== by 0xFD75A3C: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) >> > >> > ==29900== by 0xFD76599: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) >> > >> > ==29900== by 0xFD754AC: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) >> > >> > ==29900== by 0xA463AEA: opal_paffinity_base_select (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA439B0D: opal_init (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA1E6B3E: orte_init (in >> > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) >> > >> > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) >> > >> > ==29900== by 0x400CC6: main (prog.c:5) >> > >> > ==29900== Address 0x0 is not stack'd, malloc'd or (recently) free'd >> > >> > ==29900== >> > >> > ==29900== Conditional jump or move depends on uninitialised value(s) >> > >> > ==29900== at 0x9F5E578: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) >> > >> > ==29900== by 0x400CC6: main (prog.c:5) >> > >> > ==29900== >> > >> > ==29900== Conditional jump or move depends on uninitialised value(s) >> > >> > ==29900== at 0x9F5E57C: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) >> > >> > ==29900== by 0x400CC6: main (prog.c:5) >> > >> > ==29900== >> > >> > ==29900== Syscall param writev(vector[...]) points to uninitialised >> byte(s) >> > >> > ==29900== at 0xAD81BE7: writev (writev.c:56) >> > >> > ==29900== by 0x11397E22: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) >> > >> > ==29900== by 0x11398C5C: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) >> > >> > ==29900== by 0x1139C2EB: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) >> > >> > ==29900== by 0x1118E7BD: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) >> > >> > ==29900== by 0x1118EDB8: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) >> > >> > ==29900== by 0x10D85AD8: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) >> > >> > ==29900== by 0x10D854DE: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) >> > >> > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) >> > >> > ==29900== by 0x400CC6: main (prog.c:5) >> > >> > ==29900== Address 0x1815faf7 is 87 bytes inside a block of size 256 >> alloc'd >> > >> > ==29900== at 0x4C28CCE: realloc (vg_replace_malloc.c:632) >> > >> > ==29900== by 0xA43ADB7: ??? (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0xA43B8CD: ??? (in >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) >> > >> > ==29900== by 0x10D85AAC: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) >> > >> > ==29900== by 0x10D854DE: ??? (in >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) >> > >> > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) >> > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) >> > >> > ==29900== by 0x400CC6: main (prog.c:5) >> > >> > ==29900== >> > >> > ==29900== >> > >> > ==29900== HEAP SUMMARY: >> > >> > ==29900== in use at exit: 258,198 bytes in 2,787 blocks >> > >> > ==29900== total heap usage: 11,718 allocs, 8,931 frees, 17,060,981 >> bytes >> > allocated >> > >> > ==29900== >> > >> > ==29900== LEAK SUMMARY: >> > >> > ==29900== definitely lost: 5,956 bytes in 55 blocks >> > >> > ==29900== indirectly lost: 3,722 bytes in 22 blocks >> > >> > ==29900== possibly lost: 0 bytes in 0 blocks >> > >> > ==29900== still reachable: 248,520 bytes in 2,710 blocks >> > >> > ==29900== suppressed: 0 bytes in 0 blocks >> > >> > ==29900== Rerun with --leak-check=full to see details of leaked memory >> > >> > ==29900== >> > >> > ==29900== For counts of detected and suppressed errors, rerun with: -v >> > >> > ==29900== Use --track-origins=yes to see where uninitialised values come >> > from >> > >> > ==29900== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from >> 4) >> > >> > >> > On Wed, Jan 22, 2014 at 6:40 PM, Jed Brown wrote: >> > >> >> David Liu writes: >> >> >> >> > Hi, I'm running a very simple code, consisting of just PetscFinalize >> and >> >> > PetscInitialize and nothing else. >> >> > >> >> > I'm running it with valgrind using the command >> >> > "valgrind ./run" >> >> > >> >> > I also tried (as the petsc homepage suggests) >> >> > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off >> >> > >> >> > For both cases, I get tons of error messages like >> >> > "Conditional jump or move depends on uninitialised value(s)" >> >> > "Use of uninitialised value of size 8" >> >> > "Invalid read of size 8" >> >> > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" >> >> >> >> You have to send the *exact and complete* output, not snippets. Are >> you >> >> using Open MPI? Chances are this is in the stack somewhere because we >> >> regularly test PETSc itself using valgrind. >> >> >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Wed Jan 22 19:36:31 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Wed, 22 Jan 2014 19:36:31 -0600 Subject: [petsc-users] tons of valgrind errors with simply PetscInitialize and PetscFinalize? In-Reply-To: References: <87ob338u0t.fsf@jedbrown.org> <87iotb8t8j.fsf@jedbrown.org> Message-ID: Or use --download-f-blas-lapack. For debugging [with valgrind] - its best to use system blas or --download-f-blas-lapack with --download-mpich [with the default --with-debugging=1] And use a different PETSC_ARCH for this debug build - so that you can use different higher performing blas/mpi/other stuff for performance runs. Satish On Wed, 22 Jan 2014, Matthew Knepley wrote: > On Wed, Jan 22, 2014 at 7:22 PM, David Liu wrote: > > > Okay, I reinstalled Petsc with Mpich, and the list of errors is a lot > > shorter: It looks like I already have openblas here too. Is this the best I > > can get? > > > > The common solution is to put these in a valgrind suppressions file. > > Matt > > > > ==22666== Memcheck, a memory error detector > > > > ==22666== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et al. > > > > ==22666== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright info > > > > ==22666== Command: ./run > > > > ==22666== > > > > ==22666== Conditional jump or move depends on uninitialised value(s) > > > > ==22666== at 0xAE774AF: ____strtoul_l_internal (strtol_l.c:438) > > > > ==22666== by 0x7442EE2: gotoblas_affinity_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==22666== by 0x711811A: gotoblas_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==22666== by 0x400DF7F: call_init (dl-init.c:85) > > > > ==22666== by 0x400E076: _dl_init (dl-init.c:134) > > > > ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > > > ==22666== > > > > ==22666== Conditional jump or move depends on uninitialised value(s) > > > > ==22666== at 0xAE77427: ____strtoul_l_internal (strtol_l.c:442) > > > > ==22666== by 0x7442EE2: gotoblas_affinity_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==22666== by 0x711811A: gotoblas_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==22666== by 0x400DF7F: call_init (dl-init.c:85) > > > > ==22666== by 0x400E076: _dl_init (dl-init.c:134) > > > > ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > > > ==22666== > > > > ==22666== Use of uninitialised value of size 8 > > > > ==22666== at 0xAE77465: ____strtoul_l_internal (strtol_l.c:466) > > > > ==22666== by 0x7442EE2: gotoblas_affinity_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==22666== by 0x711811A: gotoblas_init (in > > /usr/lib/openblas-base/libopenblas.so.0) > > > > ==22666== by 0x400DF7F: call_init (dl-init.c:85) > > > > ==22666== by 0x400E076: _dl_init (dl-init.c:134) > > > > ==22666== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > > > > ==22666== > > > > ==22666== > > > > ==22666== HEAP SUMMARY: > > > > ==22666== in use at exit: 0 bytes in 0 blocks > > > > ==22666== total heap usage: 222 allocs, 222 frees, 117,046 bytes > > allocated > > > > ==22666== > > > > ==22666== All heap blocks were freed -- no leaks are possible > > > > ==22666== > > > > ==22666== For counts of detected and suppressed errors, rerun with: -v > > > > ==22666== Use --track-origins=yes to see where uninitialised values come > > from > > > > ==22666== ERROR SUMMARY: 6 errors from 3 contexts (suppressed: 4 from 4) > > > > > > On Wed, Jan 22, 2014 at 6:57 PM, Jed Brown wrote: > > > >> David Liu writes: > >> > >> > sure thing. Here's what I get when I directly run the executable (no > >> MPI if > >> > I understand correctly). > >> > >> No, you are linked to Open MPI and it is very noisy under Valgrind. Use > >> MPICH if you want something tight. I don't know if the gotoblas noise > >> has been fixed, but that project has evolved into OpenBLAS, which you > >> may as well use since it is the maintained code base. > >> > >> http://www.openblas.net/ > >> > >> > If I do "mpirun -n 1 valgrind ./run", I get the exact same thing. > >> > > >> > ==29900== Memcheck, a memory error detector > >> > > >> > ==29900== Copyright (C) 2002-2011, and GNU GPL'd, by Julian Seward et > >> al. > >> > > >> > ==29900== Using Valgrind-3.7.0 and LibVEX; rerun with -h for copyright > >> info > >> > > >> > ==29900== Command: ./run > >> > > >> > ==29900== > >> > > >> > ==29900== Conditional jump or move depends on uninitialised value(s) > >> > > >> > ==29900== at 0xACE64AF: ____strtoul_l_internal (strtol_l.c:438) > >> > > >> > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > >> > /usr/lib/openblas-base/libopenblas.so.0) > >> > > >> > ==29900== by 0x6E9811A: gotoblas_init (in > >> > /usr/lib/openblas-base/libopenblas.so.0) > >> > > >> > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > >> > > >> > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > >> > > >> > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > >> > > >> > ==29900== > >> > > >> > ==29900== Conditional jump or move depends on uninitialised value(s) > >> > > >> > ==29900== at 0xACE6427: ____strtoul_l_internal (strtol_l.c:442) > >> > > >> > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > >> > /usr/lib/openblas-base/libopenblas.so.0) > >> > > >> > ==29900== by 0x6E9811A: gotoblas_init (in > >> > /usr/lib/openblas-base/libopenblas.so.0) > >> > > >> > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > >> > > >> > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > >> > > >> > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > >> > > >> > ==29900== > >> > > >> > ==29900== Use of uninitialised value of size 8 > >> > > >> > ==29900== at 0xACE6465: ____strtoul_l_internal (strtol_l.c:466) > >> > > >> > ==29900== by 0x71C2EE2: gotoblas_affinity_init (in > >> > /usr/lib/openblas-base/libopenblas.so.0) > >> > > >> > ==29900== by 0x6E9811A: gotoblas_init (in > >> > /usr/lib/openblas-base/libopenblas.so.0) > >> > > >> > ==29900== by 0x400DF7F: call_init (dl-init.c:85) > >> > > >> > ==29900== by 0x400E076: _dl_init (dl-init.c:134) > >> > > >> > ==29900== by 0x4000B29: ??? (in /lib/x86_64-linux-gnu/ld-2.13.so) > >> > > >> > ==29900== > >> > > >> > ==29900== Invalid read of size 8 > >> > > >> > ==29900== at 0xAD378CD: _wordcopy_fwd_dest_aligned (wordcopy.c:205) > >> > > >> > ==29900== by 0xAD3156E: __GI_memmove (memmove.c:76) > >> > > >> > ==29900== by 0xAD38B7B: argz_insert (argz-insert.c:55) > >> > > >> > ==29900== by 0xA4405E5: ??? (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA4407FF: ??? (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA43FFC8: ??? (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA440F57: lt_dlforeachfile (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA447FCE: mca_base_component_find (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA448AC1: mca_base_components_open (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA463C44: opal_paffinity_base_open (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA439AD2: opal_init (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA1E6B3E: orte_init (in > >> > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > >> > > >> > ==29900== Address 0xc15a998 is 40 bytes inside a block of size 47 > >> alloc'd > >> > > >> > ==29900== at 0x4C28BED: malloc (vg_replace_malloc.c:263) > >> > > >> > ==29900== by 0xA43F658: lt__malloc (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA44078E: ??? (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA43FFC8: ??? (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA440F57: lt_dlforeachfile (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA447FCE: mca_base_component_find (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA448AC1: mca_base_components_open (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA463C44: opal_paffinity_base_open (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA439AD2: opal_init (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA1E6B3E: orte_init (in > >> > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > >> > > >> > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== > >> > > >> > ==29900== Syscall param sched_setaffinity(mask) points to unaddressable > >> > byte(s) > >> > > >> > ==29900== at 0xAD852F9: syscall (syscall.S:39) > >> > > >> > ==29900== by 0xFD75621: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > >> > > >> > ==29900== by 0xFD75A3C: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > >> > > >> > ==29900== by 0xFD76599: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > >> > > >> > ==29900== by 0xFD754AC: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_paffinity_linux.so) > >> > > >> > ==29900== by 0xA463AEA: opal_paffinity_base_select (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA439B0D: opal_init (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA1E6B3E: orte_init (in > >> > /usr/lib/openmpi/lib/libopen-rte.so.0.0.0) > >> > > >> > ==29900== by 0x9F5E373: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > >> > > >> > ==29900== by 0x400CC6: main (prog.c:5) > >> > > >> > ==29900== Address 0x0 is not stack'd, malloc'd or (recently) free'd > >> > > >> > ==29900== > >> > > >> > ==29900== Conditional jump or move depends on uninitialised value(s) > >> > > >> > ==29900== at 0x9F5E578: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > >> > > >> > ==29900== by 0x400CC6: main (prog.c:5) > >> > > >> > ==29900== > >> > > >> > ==29900== Conditional jump or move depends on uninitialised value(s) > >> > > >> > ==29900== at 0x9F5E57C: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > >> > > >> > ==29900== by 0x400CC6: main (prog.c:5) > >> > > >> > ==29900== > >> > > >> > ==29900== Syscall param writev(vector[...]) points to uninitialised > >> byte(s) > >> > > >> > ==29900== at 0xAD81BE7: writev (writev.c:56) > >> > > >> > ==29900== by 0x11397E22: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > >> > > >> > ==29900== by 0x11398C5C: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > >> > > >> > ==29900== by 0x1139C2EB: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_oob_tcp.so) > >> > > >> > ==29900== by 0x1118E7BD: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > >> > > >> > ==29900== by 0x1118EDB8: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_rml_oob.so) > >> > > >> > ==29900== by 0x10D85AD8: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > >> > > >> > ==29900== by 0x10D854DE: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > >> > > >> > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > >> > > >> > ==29900== by 0x400CC6: main (prog.c:5) > >> > > >> > ==29900== Address 0x1815faf7 is 87 bytes inside a block of size 256 > >> alloc'd > >> > > >> > ==29900== at 0x4C28CCE: realloc (vg_replace_malloc.c:632) > >> > > >> > ==29900== by 0xA43ADB7: ??? (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0xA43B8CD: ??? (in > >> > /usr/lib/openmpi/lib/libopen-pal.so.0.0.0) > >> > > >> > ==29900== by 0x10D85AAC: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > >> > > >> > ==29900== by 0x10D854DE: ??? (in > >> > /usr/lib/openmpi/lib/openmpi/mca_grpcomm_bad.so) > >> > > >> > ==29900== by 0x9F5EBAE: ??? (in /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x9F7F20D: PMPI_Init_thread (in > >> > /usr/lib/openmpi/lib/libmpi.so.0.0.4) > >> > > >> > ==29900== by 0x4F95F49: PetscInitialize (pinit.c:675) > >> > > >> > ==29900== by 0x400CC6: main (prog.c:5) > >> > > >> > ==29900== > >> > > >> > ==29900== > >> > > >> > ==29900== HEAP SUMMARY: > >> > > >> > ==29900== in use at exit: 258,198 bytes in 2,787 blocks > >> > > >> > ==29900== total heap usage: 11,718 allocs, 8,931 frees, 17,060,981 > >> bytes > >> > allocated > >> > > >> > ==29900== > >> > > >> > ==29900== LEAK SUMMARY: > >> > > >> > ==29900== definitely lost: 5,956 bytes in 55 blocks > >> > > >> > ==29900== indirectly lost: 3,722 bytes in 22 blocks > >> > > >> > ==29900== possibly lost: 0 bytes in 0 blocks > >> > > >> > ==29900== still reachable: 248,520 bytes in 2,710 blocks > >> > > >> > ==29900== suppressed: 0 bytes in 0 blocks > >> > > >> > ==29900== Rerun with --leak-check=full to see details of leaked memory > >> > > >> > ==29900== > >> > > >> > ==29900== For counts of detected and suppressed errors, rerun with: -v > >> > > >> > ==29900== Use --track-origins=yes to see where uninitialised values come > >> > from > >> > > >> > ==29900== ERROR SUMMARY: 619 errors from 8 contexts (suppressed: 4 from > >> 4) > >> > > >> > > >> > On Wed, Jan 22, 2014 at 6:40 PM, Jed Brown wrote: > >> > > >> >> David Liu writes: > >> >> > >> >> > Hi, I'm running a very simple code, consisting of just PetscFinalize > >> and > >> >> > PetscInitialize and nothing else. > >> >> > > >> >> > I'm running it with valgrind using the command > >> >> > "valgrind ./run" > >> >> > > >> >> > I also tried (as the petsc homepage suggests) > >> >> > ${PETSC_DIR}/bin/petscmpiexec -valgrind -n 1 ./run -malloc off > >> >> > > >> >> > For both cases, I get tons of error messages like > >> >> > "Conditional jump or move depends on uninitialised value(s)" > >> >> > "Use of uninitialised value of size 8" > >> >> > "Invalid read of size 8" > >> >> > "Address 0xc15a998 is 40 bytes inside a block of size 47 alloc'd" > >> >> > >> >> You have to send the *exact and complete* output, not snippets. Are > >> you > >> >> using Open MPI? Chances are this is in the stack somewhere because we > >> >> regularly test PETSc itself using valgrind. > >> >> > >> > > > > > > > From dharmareddy84 at gmail.com Wed Jan 22 20:20:24 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 22 Jan 2014 20:20:24 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: Hello, I will try to f-blas-pack. later today. I did some more digging of the code: When i look at the snes object...I find the follwoing: I can see that the ctx and residual and jacobian functions are set right. Where as the fortran callbacks in the snes seem to be wrong..even though snes says it has one fortran callback..am i reading this right ? (idb) print (*snes).dm.dmsnes.fortrancallback[1][0] $95 = {func = 0x7e9e7e , ctx = 0x2b591f8} (idb) print (*snes).dm.dmsnes.fortrancallback[1][1] $96 = {func = 0x7e9bb8 , ctx = 0x2b591f8} (idb) print (*snes).hdr $97 = {classid = 1211230, bops = 0x53bc4d0, comm = -2080374784, type = 0, flops = 0, time = 0, mem = 1340, memchild ren = 0, id = 67, refct = 1, tag = 1073741734, qlist = 0x0, olist = 0x0, class_name = 0x2b592d32b9fc "SNES", descri ption = 0x2b592d32ba04 "Nonlinear solver", mansec = 0x2b592d32b9fc "SNES", type_name = 0x5416040 "newtonls", parent = 0x0, parentid = 0, name = 0x0, prefix = 0x54146b0 "ddm_", tablevel = 0, cpp = 0x0, state = 0, int_idmax = 0, int star_idmax = 0, intcomposedstate = 0x0, intstarcomposedstate = 0x0, intcomposeddata = 0x0, intstarcomposeddata = 0x 0, real_idmax = 0, realstar_idmax = 0, realcomposedstate = 0x0, realstarcomposedstate = 0x0, realcomposeddata = 0x0 , realstarcomposeddata = 0x0, scalar_idmax = 0, scalarstar_idmax = 0, scalarcomposedstate = 0x0, scalarstarcomposed state = 0x0, scalarcomposeddata = 0x0, scalarstarcomposeddata = 0x0, fortran_func_pointers = 0x0, num_fortran_func_ pointers = 0, *fortrancallback = {0x54cd5e0, 0x0}, num_fortrancallback = {1, 0}, python_context = 0x0, python_destr oy = 0x0, noptionhandler = 0, (*optionhandler)(PetscObject, void *) = {0x0, 0x0, 0x0, 0x0, 0x0}, (*optiondestroy)(P etscObject, void *) = {0x0, 0x0, 0x0, 0x0, 0x0}, *optionctx = {0x0, 0x0, 0x0, 0x0, 0x0}, precision = PETSC_PRECISIO N_DOUBLE, optionsprinted = PETSC_TRUE} (idb) print (*snes).hdr.fortrancallback[0][0] $98 = {func = 0x0, ctx = 0x0} The call which sets the convergence test function is : You can see that the cctx object has same address as the context set in (*snes).dm.dmsnes.fortrancallback Breakpoint 1, SOLVERUTILS_M::solve_solver (this=0x2b591f8, ierr=-1070882422) at /home1/00924/Reddy135/projects/ut gds/src/solver/Solver.F90:348 348 call SNESSetConvergenceTest(this%snes, SNESConvergenceTest_snes, this,PETSC_NULL_FUNCTION, ierr); CHKERRQ(ierr) (idb) c Continuing. Breakpoint 4, snessetconvergencetest_ (snes=0x2b59210, func=0x7ea300 , cctx=0x2b591f8, destroy=0x0, ierr=0x7fffcd0c04f4) at /home1/00924/Reddy135/LocalApps/petsc/src/snes/interface/ftn-custom/zsnesf.c :254 The stack trace is.. (idb) bt #0 0x00002b592ca05849 in SNESSolve_NEWTONLS (snes=0x53bba60) at /home1/00924/Reddy135/LocalApps/petsc/src/snes/imp ls/ls/ls.c:197 #1 0x00002b592caaf980 in SNESSolve (snes=0x53bba60, b=0x0, x=0x53ddc00) at /home1/00924/Reddy135/LocalApps/petsc/s rc/snes/interface/snes.c:3809 #2 0x00002b592cae975b in snessolve_ (snes=0x2b59210, b=0xe2f780, x=0x2b59258, __ierr=0x7fffcd0c04f4) at /home1/009 24/Reddy135/LocalApps/petsc/src/snes/interface/ftn-custom/zsnesf.c:171 #3 0x00000000007ea68f in SOLVERUTILS_M::solve_solver (this=0x2b591f8, ierr=0) at /home1/00924/Reddy135/projects/ut gds/src/solver/Solver.F90:350 #4 0x00000000005b99d9 in FEMLIB_M::solve2_vp (this=0x2b58d60, solinit={...}) at /home1/00924/Reddy135/projects/utg ds/src/fem/VariationalProblemBoundProcedures.F90:793 #5 0x0000000000430277 in UTGDS_M::runsimulation_ddm (this=0x7fffcd0c11f0) at /home1/00924/Reddy135/projects/utgds/ src/devicesimulator/runDDM.F90:39 #6 0x000000000042623e in UTGDS_M::runsimulation_device (this=0x7fffcd0c11f0) at /home1/00924/Reddy135/projects/utg ds/src/devicesimulator/UTGDSmod.F90:267 #7 0x000000000040840f in oneddgfetpoissonschrod () at /home1/00924/Reddy135/projects/utgds/test/testDDM/RTDPoisTes t.F90:13 #8 0x0000000000407e4c in main () in /home1/00924/Reddy135/projects/utgds/test/testDDM/PoisTest #9 0x000000390881ecdd in __libc_start_main () in /lib64/libc-2.12.so Thanks Reddy On Wed, Jan 22, 2014 at 5:45 PM, Matthew Knepley wrote: > On Wed, Jan 22, 2014 at 5:37 PM, Dharmendar Reddy > wrote: >> >> On Wed, Jan 22, 2014 at 5:33 PM, Matthew Knepley >> wrote: >> > >> > On Wed, Jan 22, 2014 at 4:50 PM, Dharmendar Reddy >> > >> > wrote: >> >> >> >> I take back my earlier email... >> > >> > >> > Do you have the threadcomm stuff turned on? >> >> I do not know what this means. Is related to compile time flags for my >> fortran code ? I link to mkl which is threaded. But otherwise, i >> guess, the answer is no. > > > The weird business looks like its in pthreads, so could you reconfigure > without MKL? > > $PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-f-blas-lapack > --PETSC_ARCH=arch-testing > > It would not surprise me if this was the problem. > > Matt > >> >> >> > >> > Matt >> > >> >> >> >> I see the error irrespective of valgrind options. I did a clean >> >> compile to test it few times now. >> >> See the attached valgrind.log >> >> >> >> Now the difference between, ex5f90.F and my code is that i use >> >> DMSNESSetFunctionLocal in the case where the code fails. >> >> >> >> I have also attached the solver.F90 which wraps the calls to snes, Now >> >> the solver has to interface (1) for equations which are handled with a >> >> DM and (2) for equation with out DM , here i use SNESSetFunction, and >> >> this part of the code runs fine with the test case in the code which >> >> can be compiled with -DTestSolver and standard petsc makefile >> >> >> >> The case with DM is linked deeply into my code, i am trying to get to >> >> a test case for that. >> >> >> >> thanks >> >> Reddy >> >> >> >> On Wed, Jan 22, 2014 at 4:30 PM, Barry Smith >> >> wrote: >> >> > >> >> > The thing to use in valgrind is -q --tool=memcheck >> >> > >> >> > This checks for corrupted and illegally accessed memory, >> >> > uninitialized memory etc It shows the exact lines that memory is >> >> > used >> >> > incorrectly so you can fix your code. >> >> > >> >> > Barry >> >> > >> >> > On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy >> >> > >> >> > wrote: >> >> > >> >> >> Hello, >> >> >> The code works fine if i run with valgrind --leak-check=yes >> >> >> exename args >> >> >> it fails if i run valgrind exename args >> >> >> >> >> >> Any suggestions on what to look for my code? >> >> >> >> >> >> Thanks >> >> >> Reddy >> >> >> >> >> >> On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy >> >> >> wrote: >> >> >>> Hello, >> >> >>> I tried using the SNESSetConvergenceTest in ex5f90.F using >> >> >>> my >> >> >>> subroutine. Works as expected. I will try to run my code through >> >> >>> valgrind. >> >> >>> >> >> >>> Thanks >> >> >>> Reddy >> >> >>> >> >> >>> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy >> >> >>> wrote: >> >> >>>> Hello, >> >> >>>> I will also try to create a stand alone test case. >> >> >>>> >> >> >>>> Thanks >> >> >>>> Reddy >> >> >>>> >> >> >>>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley >> >> >>>> >> >> >>>> wrote: >> >> >>>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith >> >> >>>>> wrote: >> >> >>>>>> >> >> >>>>>> >> >> >>>>>> We need more information to track this down. Could you make a >> >> >>>>>> simple >> >> >>>>>> standalone code that reproduces the problem? Just creates a >> >> >>>>>> this, >> >> >>>>>> creates a >> >> >>>>>> SNES, sets the function, sets the test code and then crashes >> >> >>>>>> when >> >> >>>>>> runs. >> >> >>>>>> >> >> >>>>>> But since it is not crashing in the SNESConvergenceTest_snes >> >> >>>>>> routine I >> >> >>>>>> suspect it may be memory corruption. Have you run your code >> >> >>>>>> under >> >> >>>>>> valgrind? >> >> >>>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >> >> >>>>> >> >> >>>>> >> >> >>>>> I am putting his convergence test into ex5f right now. This can >> >> >>>>> be >> >> >>>>> valgrinded. I will send an update when it runs. >> >> >>>>> >> >> >>>>> Matt >> >> >>>>> >> >> >>>>>> >> >> >>>>>> >> >> >>>>>> Barry >> >> >>>>>> >> >> >>>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >> >> >>>>>> >> >> >>>>>> wrote: >> >> >>>>>> >> >> >>>>>>> Hello, >> >> >>>>>>> I am getting a segmentation fault when i use >> >> >>>>>>> SNESSetConvergenceTest from Fortran. >> >> >>>>>>> >> >> >>>>>>> I use the following: >> >> >>>>>>> >> >> >>>>>>> call SNESSetConvergenceTest(this%snes, >> >> >>>>>>> SNESConvergenceTest_snes, >> >> >>>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) >> >> >>>>>>> >> >> >>>>>>> where the soubtoutine is >> >> >>>>>>> >> >> >>>>>>> subroutine >> >> >>>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, >> >> >>>>>>> ierr) >> >> >>>>>>> implicit none >> >> >>>>>>> #include "finclude/petsc.h" >> >> >>>>>>> ! IO Variables >> >> >>>>>>> SNES :: snes >> >> >>>>>>> integer :: it >> >> >>>>>>> PetscReal :: xnorm >> >> >>>>>>> PetscReal :: gnorm >> >> >>>>>>> PetscReal :: fnorm >> >> >>>>>>> SNESConvergedReason :: reason >> >> >>>>>>> type(Solver_t) :: this >> >> >>>>>>> PetscErrorCode :: ierr >> >> >>>>>>> ! Local Variables >> >> >>>>>>> Vec :: X, dX >> >> >>>>>>> Vec :: F, W, G >> >> >>>>>>> real(WP) :: lambda >> >> >>>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm >> >> >>>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >> >> >>>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, >> >> >>>>>>> ierr) >> >> >>>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, >> >> >>>>>>> reason, >> >> >>>>>>> ierr) >> >> >>>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT >> >> >>>>>>> end subroutine SNESConvergenceTest_snes >> >> >>>>>>> >> >> >>>>>>> Code works fine if the call at Line 1 is commented i.e, if i >> >> >>>>>>> donot >> >> >>>>>>> set the convergencetest >> >> >>>>>>> >> >> >>>>>>> I have attached the stack trace when the code fails >> >> >>>>>>> (traceFail.log) >> >> >>>>>>> and stack trace of the code which runs well (tracePass.log). >> >> >>>>>>> >> >> >>>>>>> >> >> >>>>>>> >> >> >>>>>>> Thanks >> >> >>>>>>> Reddy >> >> >>>>>>> >> >> >>>>>> >> >> >>>>> >> >> >>>>> >> >> >>>>> >> >> >>>>> -- >> >> >>>>> What most experimenters take for granted before they begin their >> >> >>>>> experiments >> >> >>>>> is infinitely more interesting than any results to which their >> >> >>>>> experiments >> >> >>>>> lead. >> >> >>>>> -- Norbert Wiener >> >> >>>> >> >> >>>> >> >> >>>> >> >> >>>> -- >> >> >>>> ----------------------------------------------------- >> >> >>>> Dharmendar Reddy Palle >> >> >>>> Graduate Student >> >> >>>> Microelectronics Research center, >> >> >>>> University of Texas at Austin, >> >> >>>> 10100 Burnet Road, Bldg. 160 >> >> >>>> MER 2.608F, TX 78758-4445 >> >> >>>> e-mail: dharmareddy84 at gmail.com >> >> >>>> Phone: +1-512-350-9082 >> >> >>>> United States of America. >> >> >>>> Homepage: https://webspace.utexas.edu/~dpr342 >> >> >>> >> >> >>> >> >> >>> >> >> >>> -- >> >> >>> ----------------------------------------------------- >> >> >>> Dharmendar Reddy Palle >> >> >>> Graduate Student >> >> >>> Microelectronics Research center, >> >> >>> University of Texas at Austin, >> >> >>> 10100 Burnet Road, Bldg. 160 >> >> >>> MER 2.608F, TX 78758-4445 >> >> >>> e-mail: dharmareddy84 at gmail.com >> >> >>> Phone: +1-512-350-9082 >> >> >>> United States of America. >> >> >>> Homepage: https://webspace.utexas.edu/~dpr342 >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> ----------------------------------------------------- >> >> >> Dharmendar Reddy Palle >> >> >> Graduate Student >> >> >> Microelectronics Research center, >> >> >> University of Texas at Austin, >> >> >> 10100 Burnet Road, Bldg. 160 >> >> >> MER 2.608F, TX 78758-4445 >> >> >> e-mail: dharmareddy84 at gmail.com >> >> >> Phone: +1-512-350-9082 >> >> >> United States of America. >> >> >> Homepage: https://webspace.utexas.edu/~dpr342 >> >> > >> >> >> >> >> >> >> >> -- >> >> ----------------------------------------------------- >> >> Dharmendar Reddy Palle >> >> Graduate Student >> >> Microelectronics Research center, >> >> University of Texas at Austin, >> >> 10100 Burnet Road, Bldg. 160 >> >> MER 2.608F, TX 78758-4445 >> >> e-mail: dharmareddy84 at gmail.com >> >> Phone: +1-512-350-9082 >> >> United States of America. >> >> Homepage: https://webspace.utexas.edu/~dpr342 >> > >> > >> > >> > >> > -- >> > What most experimenters take for granted before they begin their >> > experiments >> > is infinitely more interesting than any results to which their >> > experiments >> > lead. >> > -- Norbert Wiener >> >> >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> Graduate Student >> Microelectronics Research center, >> University of Texas at Austin, >> 10100 Burnet Road, Bldg. 160 >> MER 2.608F, TX 78758-4445 >> e-mail: dharmareddy84 at gmail.com >> Phone: +1-512-350-9082 >> United States of America. >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From bsmith at mcs.anl.gov Wed Jan 22 20:52:23 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 22 Jan 2014 20:52:23 -0600 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <52E07B20.2020902@gmail.com> References: <52E0260F.8050902@gmail.com> <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> <52E04EA8.9080603@gmail.com> <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> <52E06D22.2080009@gmail.com> <52E07B20.2020902@gmail.com> Message-ID: <3D9DB164-612D-48F4-8B2C-EF22C37A4109@mcs.anl.gov> That is unfortunate. You may need a good preconditioning strategy. Can you tell us more about your problem? Do you have some fluid variables that couple between cells and then chemistry in each cell. Barry On Jan 22, 2014, at 8:14 PM, Danyang Su wrote: > with option '-pc_type lu', I got an error message after some steps. > > [0]PETSC ERROR: --------------------- Error Message ------------------------------------ > [0]PETSC ERROR: Detected zero pivot in LU factorization: > see http://www.mcs.anl.gov/petsc/documentation/faq.html#ZeroPivot! > [0]PETSC ERROR: Zero pivot row 5 value 7.63923e-045 tolerance 2.22045e-014! > > Danyang > > On 22/01/2014 5:28 PM, Barry Smith wrote: >> With a 1d problem likely the sparse format and -pc_type lu is the way to go. >> >> Barry >> >> On Jan 22, 2014, at 7:15 PM, Danyang Su wrote: >> >>> On 22/01/2014 4:32 PM, Barry Smith wrote: >>>> What ODE integrator are you using? Your own? One in PETSc? >>> I use my own integrator and PETSc is used as KSP solver. I may need to test more cases especially 2D cases to see the behavior of dense format and sparse format. >>>> You could just use -pc_type lu and the sparse format right? Or is that too slow? >>>> >>>> Barry >>>> >>>> Jed and Emil, do we have any integrators that keep the time-step small due to slow convergence of Newton in TS? >>>> >>>> >>>> On Jan 22, 2014, at 5:05 PM, Danyang Su wrote: >>>> >>>>> On 22/01/2014 1:42 PM, Barry Smith wrote: >>>>>> Linear solvers based on ILU will behave very differently when extra zeros are kept in the matrix; they generally converge much faster because the ILU behaves more like an LU (especially in 1d). So first run one 1 process with dense and sparse formats and -pc_type lu; do they behave differently? (they pretty much shouldn?t). >>>>> It does not behave differently with the option '-pc_type lu'. >>>>>> Next run the sparse format version with -ksp_monitor_true_residual and see how the solver is converging compared to the dense format version. >>>>> The converging is quite different. >>>>> ---Sparse format >>>>> 0 KSP preconditioned resid norm 5.242977405897e-004 true resid norm 3.927123490361e-006 ||r(i)||/||b|| 1.000000000000e+000 >>>>> 1 KSP preconditioned resid norm 6.118580743238e-006 true resid norm 2.917502282301e-008 ||r(i)||/||b|| 7.429107562985e-003 >>>>> 2 KSP preconditioned resid norm 9.271130393116e-007 true resid norm 9.649272009380e-009 ||r(i)||/||b|| 2.457083927476e-003 >>>>> 3 KSP preconditioned resid norm 5.812641606714e-009 true resid norm 4.073757311146e-011 ||r(i)||/||b|| 1.037338734355e-005 >>>>> 4 KSP preconditioned resid norm 1.992914862465e-010 true resid norm 1.261636843933e-012 ||r(i)||/||b|| 3.212623303112e-007 >>>>> 5 KSP preconditioned resid norm 1.422122839379e-012 true resid norm 2.393761421284e-014 ||r(i)||/||b|| 6.095457469466e-009 >>>>> ---Dense format >>>>> 0 KSP preconditioned resid norm 2.948306125658e+000 true resid norm 2.436662454678e-004 ||r(i)||/||b|| 1.000000000000e+000 >>>>> 1 KSP preconditioned resid norm 9.798852520841e-015 true resid norm 1.267168968393e-018 ||r(i)||/||b|| 5.200428832315e-015 >>>>> >>>>> The convergence seems difficult for the sparse format and the number of outer newton iteration is usually much larger than dense format. >>>>> So the time step cannot increase due to this. >>>>> >>>>> Thanks, >>>>> >>>>> Danyang >>>>>> Barry >>>>>> >>>>>> On Jan 22, 2014, at 2:11 PM, Danyang Su wrote: >>>>>> >>>>>>> Dear All, >>>>>>> >>>>>>> I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). >>>>>>> >>>>>>> I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. >>>>>>> >>>>>>> Does anyone run into this problem before? >>>>>>> >>>>>>> Thanks and regards, >>>>>>> >>>>>>> Danyang >>>>>>> > From rasheeedsalam at syrtel.biz Wed Jan 22 21:05:11 2014 From: rasheeedsalam at syrtel.biz (Rasheed Salam) Date: Thu, 23 Jan 2014 03:05:11 +0000 Subject: [petsc-users] Proposal Message-ID: <21602350113281354430275@SB8> I have attached a business proposal to this email for your perusal. Please go over it and get back to me at your earliest convenience with your thoughts and reaction. Please let me know if you have problems viewing the attachment so that I resend it to you in a different format. Email me on: rasheedsalam at syrtel.biz so that we can go over the details together. Regards. Rasheed. -------------- next part -------------- A non-text attachment was scrubbed... Name: Proposal.jpg Type: image/jpeg Size: 229212 bytes Desc: not available URL: From dharmareddy84 at gmail.com Thu Jan 23 00:47:37 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 23 Jan 2014 00:47:37 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: Hello, I think, i found the cause of the crashes. It is due to _cb defined in zsnesf.c and a particular usage pattern. Here is how it is: The code has snes object wrapped inside a fortran data type (Solver_t) Say i have two solver objects: type(solver_t) :: solver1 type(solver_t) :: solver2 I first use solver1 to solve an equation where i do not use DM In the snes in Solver1 , i set function first and then jacobian. Now, ths static struct _cb in zsnsef has: _cb = {function = 1000, test = 0, destroy = 0, jacobian = 1001, monitor = 0, mondestroy = 0, gs = 0} Now i call the second solver with DM, where is set the function and jacobain via DMSetFxn/Jac Then i call snessetconvergenceset _cb not takes the value : _cb = {function = 1000, test = 1002, destroy = 0, jacobian = 1001, monitor = 0, mondestroy = 0, gs = 0} but the snes hdr has num_fortrancallback[0] = 1 leading to an error: at line 262 in src/sys/objects/inherit.c if (PetscUnlikely(cid >= PETSC_SMALLEST_FORTRAN_CALLBACK+obj->num_fortrancallback[cbtype])) SETERRQ(obj->comm,PETSC_ERR_ARG_CORRUPT,"Fortran callback not set on this object"); There is another scenario where my code hangs, i noted it as case (2) [line 968 in solver.F90] in the comments of the attached test case. i have attahced the logs for each of the three cases considered. why cannot _cb reside inside the snes object ? Thanks Reddy On Wed, Jan 22, 2014 at 8:20 PM, Dharmendar Reddy wrote: > Hello, > I will try to f-blas-pack. later today. > > I did some more digging of the code: > > When i look at the snes object...I find the follwoing: I can see that > the ctx and residual and jacobian functions are set right. Where as > the fortran callbacks in the snes seem to be wrong..even though snes > says it has one fortran callback..am i reading this right ? > > (idb) print (*snes).dm.dmsnes.fortrancallback[1][0] > $95 = {func = 0x7e9e7e , ctx = 0x2b591f8} > (idb) print (*snes).dm.dmsnes.fortrancallback[1][1] > $96 = {func = 0x7e9bb8 , ctx = 0x2b591f8} > (idb) print (*snes).hdr > $97 = {classid = 1211230, bops = 0x53bc4d0, comm = -2080374784, type = > 0, flops = 0, time = 0, mem = 1340, memchild > ren = 0, id = 67, refct = 1, tag = 1073741734, qlist = 0x0, olist = > 0x0, class_name = 0x2b592d32b9fc "SNES", descri > ption = 0x2b592d32ba04 "Nonlinear solver", mansec = 0x2b592d32b9fc > "SNES", type_name = 0x5416040 "newtonls", parent > = 0x0, parentid = 0, name = 0x0, prefix = 0x54146b0 "ddm_", tablevel > = 0, cpp = 0x0, state = 0, int_idmax = 0, int > star_idmax = 0, intcomposedstate = 0x0, intstarcomposedstate = 0x0, > intcomposeddata = 0x0, intstarcomposeddata = 0x > 0, real_idmax = 0, realstar_idmax = 0, realcomposedstate = 0x0, > realstarcomposedstate = 0x0, realcomposeddata = 0x0 > , realstarcomposeddata = 0x0, scalar_idmax = 0, scalarstar_idmax = 0, > scalarcomposedstate = 0x0, scalarstarcomposed > state = 0x0, scalarcomposeddata = 0x0, scalarstarcomposeddata = 0x0, > fortran_func_pointers = 0x0, num_fortran_func_ > pointers = 0, *fortrancallback = {0x54cd5e0, 0x0}, num_fortrancallback > = {1, 0}, python_context = 0x0, python_destr > oy = 0x0, noptionhandler = 0, (*optionhandler)(PetscObject, void *) = > {0x0, 0x0, 0x0, 0x0, 0x0}, (*optiondestroy)(P > etscObject, void *) = {0x0, 0x0, 0x0, 0x0, 0x0}, *optionctx = {0x0, > 0x0, 0x0, 0x0, 0x0}, precision = PETSC_PRECISIO > N_DOUBLE, optionsprinted = PETSC_TRUE} > (idb) print (*snes).hdr.fortrancallback[0][0] > $98 = {func = 0x0, ctx = 0x0} > > The call which sets the convergence test function is : You can see > that the cctx object has same address as the context set in > (*snes).dm.dmsnes.fortrancallback > > Breakpoint 1, SOLVERUTILS_M::solve_solver (this=0x2b591f8, > ierr=-1070882422) at /home1/00924/Reddy135/projects/ut > gds/src/solver/Solver.F90:348 > 348 call SNESSetConvergenceTest(this%snes, > SNESConvergenceTest_snes, this,PETSC_NULL_FUNCTION, ierr); > CHKERRQ(ierr) > (idb) c > Continuing. > > Breakpoint 4, snessetconvergencetest_ (snes=0x2b59210, func=0x7ea300 > , cctx=0x2b591f8, > destroy=0x0, ierr=0x7fffcd0c04f4) at > /home1/00924/Reddy135/LocalApps/petsc/src/snes/interface/ftn-custom/zsnesf.c > :254 > > > The stack trace is.. > > (idb) bt > #0 0x00002b592ca05849 in SNESSolve_NEWTONLS (snes=0x53bba60) at > /home1/00924/Reddy135/LocalApps/petsc/src/snes/imp > ls/ls/ls.c:197 > #1 0x00002b592caaf980 in SNESSolve (snes=0x53bba60, b=0x0, > x=0x53ddc00) at /home1/00924/Reddy135/LocalApps/petsc/s > rc/snes/interface/snes.c:3809 > #2 0x00002b592cae975b in snessolve_ (snes=0x2b59210, b=0xe2f780, > x=0x2b59258, __ierr=0x7fffcd0c04f4) at /home1/009 > 24/Reddy135/LocalApps/petsc/src/snes/interface/ftn-custom/zsnesf.c:171 > #3 0x00000000007ea68f in SOLVERUTILS_M::solve_solver (this=0x2b591f8, > ierr=0) at /home1/00924/Reddy135/projects/ut > gds/src/solver/Solver.F90:350 > #4 0x00000000005b99d9 in FEMLIB_M::solve2_vp (this=0x2b58d60, > solinit={...}) at /home1/00924/Reddy135/projects/utg > ds/src/fem/VariationalProblemBoundProcedures.F90:793 > #5 0x0000000000430277 in UTGDS_M::runsimulation_ddm > (this=0x7fffcd0c11f0) at /home1/00924/Reddy135/projects/utgds/ > src/devicesimulator/runDDM.F90:39 > #6 0x000000000042623e in UTGDS_M::runsimulation_device > (this=0x7fffcd0c11f0) at /home1/00924/Reddy135/projects/utg > ds/src/devicesimulator/UTGDSmod.F90:267 > #7 0x000000000040840f in oneddgfetpoissonschrod () at > /home1/00924/Reddy135/projects/utgds/test/testDDM/RTDPoisTes > t.F90:13 > #8 0x0000000000407e4c in main () in > /home1/00924/Reddy135/projects/utgds/test/testDDM/PoisTest > #9 0x000000390881ecdd in __libc_start_main () in /lib64/libc-2.12.so > > Thanks > Reddy > > On Wed, Jan 22, 2014 at 5:45 PM, Matthew Knepley wrote: >> On Wed, Jan 22, 2014 at 5:37 PM, Dharmendar Reddy >> wrote: >>> >>> On Wed, Jan 22, 2014 at 5:33 PM, Matthew Knepley >>> wrote: >>> > >>> > On Wed, Jan 22, 2014 at 4:50 PM, Dharmendar Reddy >>> > >>> > wrote: >>> >> >>> >> I take back my earlier email... >>> > >>> > >>> > Do you have the threadcomm stuff turned on? >>> >>> I do not know what this means. Is related to compile time flags for my >>> fortran code ? I link to mkl which is threaded. But otherwise, i >>> guess, the answer is no. >> >> >> The weird business looks like its in pthreads, so could you reconfigure >> without MKL? >> >> $PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-f-blas-lapack >> --PETSC_ARCH=arch-testing >> >> It would not surprise me if this was the problem. >> >> Matt >> >>> >>> >>> > >>> > Matt >>> > >>> >> >>> >> I see the error irrespective of valgrind options. I did a clean >>> >> compile to test it few times now. >>> >> See the attached valgrind.log >>> >> >>> >> Now the difference between, ex5f90.F and my code is that i use >>> >> DMSNESSetFunctionLocal in the case where the code fails. >>> >> >>> >> I have also attached the solver.F90 which wraps the calls to snes, Now >>> >> the solver has to interface (1) for equations which are handled with a >>> >> DM and (2) for equation with out DM , here i use SNESSetFunction, and >>> >> this part of the code runs fine with the test case in the code which >>> >> can be compiled with -DTestSolver and standard petsc makefile >>> >> >>> >> The case with DM is linked deeply into my code, i am trying to get to >>> >> a test case for that. >>> >> >>> >> thanks >>> >> Reddy >>> >> >>> >> On Wed, Jan 22, 2014 at 4:30 PM, Barry Smith >>> >> wrote: >>> >> > >>> >> > The thing to use in valgrind is -q --tool=memcheck >>> >> > >>> >> > This checks for corrupted and illegally accessed memory, >>> >> > uninitialized memory etc It shows the exact lines that memory is >>> >> > used >>> >> > incorrectly so you can fix your code. >>> >> > >>> >> > Barry >>> >> > >>> >> > On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy >>> >> > >>> >> > wrote: >>> >> > >>> >> >> Hello, >>> >> >> The code works fine if i run with valgrind --leak-check=yes >>> >> >> exename args >>> >> >> it fails if i run valgrind exename args >>> >> >> >>> >> >> Any suggestions on what to look for my code? >>> >> >> >>> >> >> Thanks >>> >> >> Reddy >>> >> >> >>> >> >> On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy >>> >> >> wrote: >>> >> >>> Hello, >>> >> >>> I tried using the SNESSetConvergenceTest in ex5f90.F using >>> >> >>> my >>> >> >>> subroutine. Works as expected. I will try to run my code through >>> >> >>> valgrind. >>> >> >>> >>> >> >>> Thanks >>> >> >>> Reddy >>> >> >>> >>> >> >>> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy >>> >> >>> wrote: >>> >> >>>> Hello, >>> >> >>>> I will also try to create a stand alone test case. >>> >> >>>> >>> >> >>>> Thanks >>> >> >>>> Reddy >>> >> >>>> >>> >> >>>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley >>> >> >>>> >>> >> >>>> wrote: >>> >> >>>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith >>> >> >>>>> wrote: >>> >> >>>>>> >>> >> >>>>>> >>> >> >>>>>> We need more information to track this down. Could you make a >>> >> >>>>>> simple >>> >> >>>>>> standalone code that reproduces the problem? Just creates a >>> >> >>>>>> this, >>> >> >>>>>> creates a >>> >> >>>>>> SNES, sets the function, sets the test code and then crashes >>> >> >>>>>> when >>> >> >>>>>> runs. >>> >> >>>>>> >>> >> >>>>>> But since it is not crashing in the SNESConvergenceTest_snes >>> >> >>>>>> routine I >>> >> >>>>>> suspect it may be memory corruption. Have you run your code >>> >> >>>>>> under >>> >> >>>>>> valgrind? >>> >> >>>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >>> >> >>>>> >>> >> >>>>> >>> >> >>>>> I am putting his convergence test into ex5f right now. This can >>> >> >>>>> be >>> >> >>>>> valgrinded. I will send an update when it runs. >>> >> >>>>> >>> >> >>>>> Matt >>> >> >>>>> >>> >> >>>>>> >>> >> >>>>>> >>> >> >>>>>> Barry >>> >> >>>>>> >>> >> >>>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >>> >> >>>>>> >>> >> >>>>>> wrote: >>> >> >>>>>> >>> >> >>>>>>> Hello, >>> >> >>>>>>> I am getting a segmentation fault when i use >>> >> >>>>>>> SNESSetConvergenceTest from Fortran. >>> >> >>>>>>> >>> >> >>>>>>> I use the following: >>> >> >>>>>>> >>> >> >>>>>>> call SNESSetConvergenceTest(this%snes, >>> >> >>>>>>> SNESConvergenceTest_snes, >>> >> >>>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) >>> >> >>>>>>> >>> >> >>>>>>> where the soubtoutine is >>> >> >>>>>>> >>> >> >>>>>>> subroutine >>> >> >>>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, >>> >> >>>>>>> ierr) >>> >> >>>>>>> implicit none >>> >> >>>>>>> #include "finclude/petsc.h" >>> >> >>>>>>> ! IO Variables >>> >> >>>>>>> SNES :: snes >>> >> >>>>>>> integer :: it >>> >> >>>>>>> PetscReal :: xnorm >>> >> >>>>>>> PetscReal :: gnorm >>> >> >>>>>>> PetscReal :: fnorm >>> >> >>>>>>> SNESConvergedReason :: reason >>> >> >>>>>>> type(Solver_t) :: this >>> >> >>>>>>> PetscErrorCode :: ierr >>> >> >>>>>>> ! Local Variables >>> >> >>>>>>> Vec :: X, dX >>> >> >>>>>>> Vec :: F, W, G >>> >> >>>>>>> real(WP) :: lambda >>> >> >>>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm >>> >> >>>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >>> >> >>>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, >>> >> >>>>>>> ierr) >>> >> >>>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, >>> >> >>>>>>> reason, >>> >> >>>>>>> ierr) >>> >> >>>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT >>> >> >>>>>>> end subroutine SNESConvergenceTest_snes >>> >> >>>>>>> >>> >> >>>>>>> Code works fine if the call at Line 1 is commented i.e, if i >>> >> >>>>>>> donot >>> >> >>>>>>> set the convergencetest >>> >> >>>>>>> >>> >> >>>>>>> I have attached the stack trace when the code fails >>> >> >>>>>>> (traceFail.log) >>> >> >>>>>>> and stack trace of the code which runs well (tracePass.log). >>> >> >>>>>>> >>> >> >>>>>>> >>> >> >>>>>>> >>> >> >>>>>>> Thanks >>> >> >>>>>>> Reddy >>> >> >>>>>>> >>> >> >>>>>> >>> >> >>>>> >>> >> >>>>> >>> >> >>>>> >>> >> >>>>> -- >>> >> >>>>> What most experimenters take for granted before they begin their >>> >> >>>>> experiments >>> >> >>>>> is infinitely more interesting than any results to which their >>> >> >>>>> experiments >>> >> >>>>> lead. >>> >> >>>>> -- Norbert Wiener >>> >> >>>> >>> >> >>>> >>> >> >>>> >>> >> >>>> -- >>> >> >>>> ----------------------------------------------------- >>> >> >>>> Dharmendar Reddy Palle >>> >> >>>> Graduate Student >>> >> >>>> Microelectronics Research center, >>> >> >>>> University of Texas at Austin, >>> >> >>>> 10100 Burnet Road, Bldg. 160 >>> >> >>>> MER 2.608F, TX 78758-4445 >>> >> >>>> e-mail: dharmareddy84 at gmail.com >>> >> >>>> Phone: +1-512-350-9082 >>> >> >>>> United States of America. >>> >> >>>> Homepage: https://webspace.utexas.edu/~dpr342 >>> >> >>> >>> >> >>> >>> >> >>> >>> >> >>> -- >>> >> >>> ----------------------------------------------------- >>> >> >>> Dharmendar Reddy Palle >>> >> >>> Graduate Student >>> >> >>> Microelectronics Research center, >>> >> >>> University of Texas at Austin, >>> >> >>> 10100 Burnet Road, Bldg. 160 >>> >> >>> MER 2.608F, TX 78758-4445 >>> >> >>> e-mail: dharmareddy84 at gmail.com >>> >> >>> Phone: +1-512-350-9082 >>> >> >>> United States of America. >>> >> >>> Homepage: https://webspace.utexas.edu/~dpr342 >>> >> >> >>> >> >> >>> >> >> >>> >> >> -- >>> >> >> ----------------------------------------------------- >>> >> >> Dharmendar Reddy Palle >>> >> >> Graduate Student >>> >> >> Microelectronics Research center, >>> >> >> University of Texas at Austin, >>> >> >> 10100 Burnet Road, Bldg. 160 >>> >> >> MER 2.608F, TX 78758-4445 >>> >> >> e-mail: dharmareddy84 at gmail.com >>> >> >> Phone: +1-512-350-9082 >>> >> >> United States of America. >>> >> >> Homepage: https://webspace.utexas.edu/~dpr342 >>> >> > >>> >> >>> >> >>> >> >>> >> -- >>> >> ----------------------------------------------------- >>> >> Dharmendar Reddy Palle >>> >> Graduate Student >>> >> Microelectronics Research center, >>> >> University of Texas at Austin, >>> >> 10100 Burnet Road, Bldg. 160 >>> >> MER 2.608F, TX 78758-4445 >>> >> e-mail: dharmareddy84 at gmail.com >>> >> Phone: +1-512-350-9082 >>> >> United States of America. >>> >> Homepage: https://webspace.utexas.edu/~dpr342 >>> > >>> > >>> > >>> > >>> > -- >>> > What most experimenters take for granted before they begin their >>> > experiments >>> > is infinitely more interesting than any results to which their >>> > experiments >>> > lead. >>> > -- Norbert Wiener >>> >>> >>> >>> -- >>> ----------------------------------------------------- >>> Dharmendar Reddy Palle >>> Graduate Student >>> Microelectronics Research center, >>> University of Texas at Austin, >>> 10100 Burnet Road, Bldg. 160 >>> MER 2.608F, TX 78758-4445 >>> e-mail: dharmareddy84 at gmail.com >>> Phone: +1-512-350-9082 >>> United States of America. >>> Homepage: https://webspace.utexas.edu/~dpr342 >> >> >> >> >> -- >> What most experimenters take for granted before they begin their experiments >> is infinitely more interesting than any results to which their experiments >> lead. >> -- Norbert Wiener > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 -- ----------------------------------------------------- Dharmendar Reddy Palle -------------- next part -------------- A non-text attachment was scrubbed... Name: Error1.log Type: application/octet-stream Size: 2303 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Error2.log Type: application/octet-stream Size: 3447 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: output.log Type: application/octet-stream Size: 330 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Solver.F90 Type: text/x-fortran Size: 32693 bytes Desc: not available URL: From gnw20 at cam.ac.uk Thu Jan 23 05:35:02 2014 From: gnw20 at cam.ac.uk (Garth N. Wells) Date: Thu, 23 Jan 2014 11:35:02 +0000 Subject: [petsc-users] =?utf-8?q?Command_line_option_to_set_number_iterati?= =?utf-8?q?ons_for_Chebyshev_eigenvalue_estimation=3F?= Message-ID: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> Is there are command line option to set the number of iterations used for the eigenvalue estimation inside the Chebyshev preconditioner? "-gamg_est_ksp_max_it" does the trick with GAMG, but I'd also like to change the number of iterations when using Chebyshev smoothing with ML. Garth From jianjun.xiao at kit.edu Thu Jan 23 05:55:14 2014 From: jianjun.xiao at kit.edu (Xiao, Jianjun (IKET)) Date: Thu, 23 Jan 2014 12:55:14 +0100 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix In-Reply-To: <68BA05D1-8122-4A62-B08E-8ACF645AEFCC@mcs.anl.gov> References: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu>, <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> <56D054AF2E93E044AC1D2685709D2868CA00A26069@KIT-MSX-07.kit.edu>, <56D054AF2E93E044AC1D2685709D2868CA00A2606B@KIT-MSX-07.kit.edu>, <68BA05D1-8122-4A62-B08E-8ACF645AEFCC@mcs.anl.gov> Message-ID: <56D054AF2E93E044AC1D2685709D2868CA00A2606E@KIT-MSX-07.kit.edu> Dear Barry, There is actually no limitation for me to use the cluster. Somehow, the version Openmpi on our Linux cluster is quite old 1.4.3. Then I updated the Openmpi to 1.6.5. Now the code works fine without any error. Ae Jed mentioned, "PETSc does not depend on any specific versions (or implementations) of MPI. http://lists.mcs.anl.gov/pipermail/petsc-users/2011-January/007635.html " I was wondering if you think that the MPI version could be the reason of my errors? Thanks. Best regards JJ ________________________________________ From: Barry Smith [bsmith at mcs.anl.gov] Sent: Thursday, January 23, 2014 1:28 AM To: Xiao, Jianjun (IKET) Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end This is a very different problem. Something on your cluster is deciding to kill your job. Perhaps you are not suppose to be running there? The matrix is very small so it is not likely due to using too much memory. You need to talk directly with the system administrator for that systems and show him/her the message above. It is not a bug in PETSc. Barry I ran with 50-60 processes under valgrind and it ran fine for all cases. On Jan 22, 2014, at 5:04 PM, Xiao, Jianjun (IKET) wrote: > I changed the code as you suggested, and I updated the nightly tarball. > > Unfortunately, I still got the error below with number of processors, say 22, 55, 61, 62 ... on the Linux cluster. And I think the number might be different on your machine. Could you please try other numbers, say 50~63? > > It seems the errors could be from my side. Could you please give me some idea on how to debug such a problem? > > Thank you. > > [60]PETSC ERROR: ------------------------------------------------------------------------ > [60]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end > [60]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [60]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[60]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors > [60]PETSC ERROR: likely location of problem given in stack below > [60]PETSC ERROR: --------------------- Stack Frames ------------------------------------ > [60]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, > [60]PETSC ERROR: INSTEAD the line number of the start of the function > [60]PETSC ERROR: is given. > [60]PETSC ERROR: [60] MatAssemblyBegin_MPISBAIJ line 483 /home/xiao/Local/petsc-dev-debug/src/mat/impls/sbaij/mpi/mpisbaij.c > [60]PETSC ERROR: [60] MatAssemblyBegin line 4854 /home/xiao/Local/petsc-dev-debug/src/mat/interface/matrix.c > [60]PETSC ERROR: [60] DMCreateMatrix_DA_3d_MPISBAIJ line 1679 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c > [60]PETSC ERROR: [60] DMCreateMatrix_DA line 625 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c > [60]PETSC ERROR: [60] DMCreateMatrix line 961 /home/xiao/Local/petsc-dev-debug/src/dm/interface/dm.c > [60]PETSC ERROR: --------------------- Error Message ------------------------------------ > [60]PETSC ERROR: Signal received! > [60]PETSC ERROR: ------------------------------------------------------------------------ > [60]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2332-g54f71ec GIT Date: 2014-01-20 14:12:11 -0700 > [60]PETSC ERROR: See docs/changes/index.html for recent updates. > [60]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [60]PETSC ERROR: See docs/index.html for manual pages. > [60]PETSC ERROR: ------------------------------------------------------------------------ > [60]PETSC ERROR: ./ex44f on a linux-gnu named cluster08 by xiao Wed Jan 22 23:51:36 2014 > [60]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib > [60]PETSC ERROR: Configure run at Wed Jan 22 23:45:50 2014 > [60]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 > [60]PETSC ERROR: ------------------------------------------------------------------------ > > JJ > _________ > _______________________________ > From: Barry Smith [bsmith at mcs.anl.gov] > Sent: Wednesday, January 22, 2014 9:29 PM > To: Xiao, Jianjun (IKET) > Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov > Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix > > There was an error in your code; because you did not use implicit none in the main program it did not tell you > CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & > 1 > Error: Symbol 'dmda_boundary_none' at (1) has no IMPLICIT type > ex1f.F90:14.26: > > & DMDA_STENCIL_BOX,-1002,-3,-3,PETSC_DECIDE,PETSC_DECIDE,& > 1 > Error: Symbol 'dmda_stencil_box' at (1) has no IMPLICIT type > > > I fixed the code by adding use petscdmda and the implicit none and it ran without error on those number of processes on both a MacOS and a Linux system > > program main ! Solves the linear system J x = f > use petscksp; use petscdm; use petscdmda > implicit none > #include > > Please let me know if you still have a problem. > > Barry > > > On Jan 22, 2014, at 5:15 AM, Xiao, Jianjun (IKET) wrote: > >> Dear Barry, >> >> I modified ex44f.F90, and ran the case on my 64-processors cluster. Please find the file in the attachment. >> >> I tried various number of processors. It seems that for number of processors: 1, 2, 3, 4, 5, 6, 7, 8, 16, 32 and 64 it works fine. For numbers such as 20, 30, 31, 60, 61 and 62, I got the error below. This time, even for MATMPIBAIJ I got error. I did not try all the numbers between 1-64. If you need more information, please let me know. >> >> Thank you for your help. >> >> Best regards >> JJ >> >> >> For MATMPISBAIJ, I got the error like this: >> >> [55]PETSC ERROR: [55] MatAssemblyBegin_MPISBAIJ line 483 src/mat/impls/sbaij/mpi/mpisbaij.c >> [55]PETSC ERROR: [55] MatAssemblyBegin line 4865 src/mat/interface/matrix.c >> [55]PETSC ERROR: [55] DMCreateMatrix_DA_3d_MPISBAIJ line 1694 src/dm/impls/da/fdda.c >> [55]PETSC ERROR: [55] DMCreateMatrix_DA line 626 src/dm/impls/da/fdda.c >> [55]PETSC ERROR: [55] DMCreateMatrix line 1002 src/dm/interface/dm.c >> [55]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [55]PETSC ERROR: Signal received! >> [55]PETSC ERROR: ------------------------------------------------------------------------ >> [55]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> [55]PETSC ERROR: See docs/changes/index.html for recent updates. >> [55]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [55]PETSC ERROR: See docs/index.html for manual pages. >> [55]PETSC ERROR: ------------------------------------------------------------------------ >> [55]PETSC ERROR: ./ex44f on a linux-gnu named cluster07 by xiao Wed Jan 22 11:54:32 2014 >> [55]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >> [55]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >> [55]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> [55]PETSC ERROR: ------------------------------------------------------------------------ >> [55]PETSC ERROR: User provided function() line 0 in unknown file >> >> >> For MATMPIBAIJ, I got the error like this: >> >> [44]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [44]PETSC ERROR: Argument out of range! >> [44]PETSC ERROR: Trying to set preallocation for row 6678 less than first local row 6714! >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> [44]PETSC ERROR: See docs/changes/index.html for recent updates. >> [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [44]PETSC ERROR: See docs/index.html for manual pages. >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 >> [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >> [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >> [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: DMCreateMatrix_DA_3d_MPIBAIJ() line 1508 in src/dm/impls/da/fdda.c >> [44]PETSC ERROR: DMCreateMatrix_DA() line 771 in src/dm/impls/da/fdda.c >> [44]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >> [44]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [44]PETSC ERROR: Corrupt argument: >> see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind! >> [44]PETSC ERROR: Invalid Pointer to Object: Parameter # 1! >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >> [44]PETSC ERROR: See docs/changes/index.html for recent updates. >> [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [44]PETSC ERROR: See docs/index.html for manual pages. >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 >> [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >> [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >> [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> [44]PETSC ERROR: ------------------------------------------------------------------------ >> [44]PETSC ERROR: MatDestroy() line 1029 in src/mat/interface/matrix.c >> >> ________________________________________ >> From: Barry Smith [bsmith at mcs.anl.gov] >> Sent: Monday, January 20, 2014 8:37 PM >> To: Xiao, Jianjun (IKET) >> Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov >> Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix >> >> Thanks for reporting the problem. This is our error. Could you please send us the code that generates the error so we can reproduce the problem, determine the cause and fix it. >> >> Barry >> >> We need to know the exact values of imax,jmax, kmax etc to reproduce the problem. >> >> >> >> On Jan 20, 2014, at 9:33 AM, Xiao, Jianjun (IKET) wrote: >> >>> Dear developers, >>> >>> I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. >>> >>> CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & >>> & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & >>> & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& >>> & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & >>> & PETSC_NULL_INTEGER,da,ierr) >>> >>> CALL DMSetMatType(da,MATMPISBAIJ,ierr) >>> CALL DMCreateMatrix(da,mat,ierr) >>> >>> A cluster with 64 processors was used for the testing. >>> >>> When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. >>> >>> For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. >>> >>> When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. >>> >>> >>> mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ >>> mpirun: [25]PETSC ERROR: Argument out of range! >>> mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! >>> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >>> mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >>> mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. >>> mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. >>> mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >>> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c >>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c >>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c >>> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c >>> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c >>> mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >>> >>> Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. >>> >>> CALL DMSetMatType(da,MATMPIBAIJ,ierr) >>> CALL DMCreateMatrix(da,gfmat,ierr) >>> >>> Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. >>> >>> JJ >> >> > > From bsmith at mcs.anl.gov Thu Jan 23 07:46:05 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 23 Jan 2014 07:46:05 -0600 Subject: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix In-Reply-To: <56D054AF2E93E044AC1D2685709D2868CA00A2606E@KIT-MSX-07.kit.edu> References: <56D054AF2E93E044AC1D2685709D2868CA00A26065@KIT-MSX-07.kit.edu>, <9494AFC4-4919-429B-8380-3898CB964E3E@mcs.anl.gov> <56D054AF2E93E044AC1D2685709D2868CA00A26069@KIT-MSX-07.kit.edu>, <56D054AF2E93E044AC1D2685709D2868CA00A2606B@KIT-MSX-07.kit.edu>, <68BA05D1-8122-4A62-B08E-8ACF645AEFCC@mcs.anl.gov> <56D054AF2E93E044AC1D2685709D2868CA00A2606E@KIT-MSX-07.kit.edu> Message-ID: <74719E65-3521-4263-ABEF-BA4166CE75CF@mcs.anl.gov> On Jan 23, 2014, at 5:55 AM, Xiao, Jianjun (IKET) wrote: > Dear Barry, > > There is actually no limitation for me to use the cluster. > > Somehow, the version Openmpi on our Linux cluster is quite old 1.4.3. Then I updated the Openmpi to 1.6.5. Now the code works fine without any error. Good > > Ae Jed mentioned, "PETSc does not depend on any specific versions (or implementations) of MPI. http://lists.mcs.anl.gov/pipermail/petsc-users/2011-January/007635.html " > > I was wondering if you think that the MPI version could be the reason of my errors? If there are errors in the MPI implementation > > Thanks. > > Best regards > JJ > ________________________________________ > From: Barry Smith [bsmith at mcs.anl.gov] > Sent: Thursday, January 23, 2014 1:28 AM > To: Xiao, Jianjun (IKET) > Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov > Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix > > Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end > > This is a very different problem. Something on your cluster is deciding to kill your job. Perhaps you are not suppose to be running there? The matrix is very small so it is not likely due to using too much memory. You need to talk directly with the system administrator for that systems and show him/her the message above. It is not a bug in PETSc. > > > Barry > > I ran with 50-60 processes under valgrind and it ran fine for all cases. > > > On Jan 22, 2014, at 5:04 PM, Xiao, Jianjun (IKET) wrote: > >> I changed the code as you suggested, and I updated the nightly tarball. >> >> Unfortunately, I still got the error below with number of processors, say 22, 55, 61, 62 ... on the Linux cluster. And I think the number might be different on your machine. Could you please try other numbers, say 50~63? >> >> It seems the errors could be from my side. Could you please give me some idea on how to debug such a problem? >> >> Thank you. >> >> [60]PETSC ERROR: ------------------------------------------------------------------------ >> [60]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end >> [60]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger >> [60]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[60]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors >> [60]PETSC ERROR: likely location of problem given in stack below >> [60]PETSC ERROR: --------------------- Stack Frames ------------------------------------ >> [60]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, >> [60]PETSC ERROR: INSTEAD the line number of the start of the function >> [60]PETSC ERROR: is given. >> [60]PETSC ERROR: [60] MatAssemblyBegin_MPISBAIJ line 483 /home/xiao/Local/petsc-dev-debug/src/mat/impls/sbaij/mpi/mpisbaij.c >> [60]PETSC ERROR: [60] MatAssemblyBegin line 4854 /home/xiao/Local/petsc-dev-debug/src/mat/interface/matrix.c >> [60]PETSC ERROR: [60] DMCreateMatrix_DA_3d_MPISBAIJ line 1679 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c >> [60]PETSC ERROR: [60] DMCreateMatrix_DA line 625 /home/xiao/Local/petsc-dev-debug/src/dm/impls/da/fdda.c >> [60]PETSC ERROR: [60] DMCreateMatrix line 961 /home/xiao/Local/petsc-dev-debug/src/dm/interface/dm.c >> [60]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [60]PETSC ERROR: Signal received! >> [60]PETSC ERROR: ------------------------------------------------------------------------ >> [60]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2332-g54f71ec GIT Date: 2014-01-20 14:12:11 -0700 >> [60]PETSC ERROR: See docs/changes/index.html for recent updates. >> [60]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [60]PETSC ERROR: See docs/index.html for manual pages. >> [60]PETSC ERROR: ------------------------------------------------------------------------ >> [60]PETSC ERROR: ./ex44f on a linux-gnu named cluster08 by xiao Wed Jan 22 23:51:36 2014 >> [60]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >> [60]PETSC ERROR: Configure run at Wed Jan 22 23:45:50 2014 >> [60]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >> [60]PETSC ERROR: ------------------------------------------------------------------------ >> >> JJ >> _________ >> _______________________________ >> From: Barry Smith [bsmith at mcs.anl.gov] >> Sent: Wednesday, January 22, 2014 9:29 PM >> To: Xiao, Jianjun (IKET) >> Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov >> Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix >> >> There was an error in your code; because you did not use implicit none in the main program it did not tell you >> CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & >> 1 >> Error: Symbol 'dmda_boundary_none' at (1) has no IMPLICIT type >> ex1f.F90:14.26: >> >> & DMDA_STENCIL_BOX,-1002,-3,-3,PETSC_DECIDE,PETSC_DECIDE,& >> 1 >> Error: Symbol 'dmda_stencil_box' at (1) has no IMPLICIT type >> >> >> I fixed the code by adding use petscdmda and the implicit none and it ran without error on those number of processes on both a MacOS and a Linux system >> >> program main ! Solves the linear system J x = f >> use petscksp; use petscdm; use petscdmda >> implicit none >> #include >> >> Please let me know if you still have a problem. >> >> Barry >> >> >> On Jan 22, 2014, at 5:15 AM, Xiao, Jianjun (IKET) wrote: >> >>> Dear Barry, >>> >>> I modified ex44f.F90, and ran the case on my 64-processors cluster. Please find the file in the attachment. >>> >>> I tried various number of processors. It seems that for number of processors: 1, 2, 3, 4, 5, 6, 7, 8, 16, 32 and 64 it works fine. For numbers such as 20, 30, 31, 60, 61 and 62, I got the error below. This time, even for MATMPIBAIJ I got error. I did not try all the numbers between 1-64. If you need more information, please let me know. >>> >>> Thank you for your help. >>> >>> Best regards >>> JJ >>> >>> >>> For MATMPISBAIJ, I got the error like this: >>> >>> [55]PETSC ERROR: [55] MatAssemblyBegin_MPISBAIJ line 483 src/mat/impls/sbaij/mpi/mpisbaij.c >>> [55]PETSC ERROR: [55] MatAssemblyBegin line 4865 src/mat/interface/matrix.c >>> [55]PETSC ERROR: [55] DMCreateMatrix_DA_3d_MPISBAIJ line 1694 src/dm/impls/da/fdda.c >>> [55]PETSC ERROR: [55] DMCreateMatrix_DA line 626 src/dm/impls/da/fdda.c >>> [55]PETSC ERROR: [55] DMCreateMatrix line 1002 src/dm/interface/dm.c >>> [55]PETSC ERROR: --------------------- Error Message ------------------------------------ >>> [55]PETSC ERROR: Signal received! >>> [55]PETSC ERROR: ------------------------------------------------------------------------ >>> [55]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >>> [55]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [55]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [55]PETSC ERROR: See docs/index.html for manual pages. >>> [55]PETSC ERROR: ------------------------------------------------------------------------ >>> [55]PETSC ERROR: ./ex44f on a linux-gnu named cluster07 by xiao Wed Jan 22 11:54:32 2014 >>> [55]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >>> [55]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >>> [55]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >>> [55]PETSC ERROR: ------------------------------------------------------------------------ >>> [55]PETSC ERROR: User provided function() line 0 in unknown file >>> >>> >>> For MATMPIBAIJ, I got the error like this: >>> >>> [44]PETSC ERROR: --------------------- Error Message ------------------------------------ >>> [44]PETSC ERROR: Argument out of range! >>> [44]PETSC ERROR: Trying to set preallocation for row 6678 less than first local row 6714! >>> [44]PETSC ERROR: ------------------------------------------------------------------------ >>> [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >>> [44]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [44]PETSC ERROR: See docs/index.html for manual pages. >>> [44]PETSC ERROR: ------------------------------------------------------------------------ >>> [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 >>> [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >>> [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >>> [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >>> [44]PETSC ERROR: ------------------------------------------------------------------------ >>> [44]PETSC ERROR: DMCreateMatrix_DA_3d_MPIBAIJ() line 1508 in src/dm/impls/da/fdda.c >>> [44]PETSC ERROR: DMCreateMatrix_DA() line 771 in src/dm/impls/da/fdda.c >>> [44]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >>> [44]PETSC ERROR: --------------------- Error Message ------------------------------------ >>> [44]PETSC ERROR: Corrupt argument: >>> see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind! >>> [44]PETSC ERROR: Invalid Pointer to Object: Parameter # 1! >>> [44]PETSC ERROR: ------------------------------------------------------------------------ >>> [44]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >>> [44]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [44]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [44]PETSC ERROR: See docs/index.html for manual pages. >>> [44]PETSC ERROR: ------------------------------------------------------------------------ >>> [44]PETSC ERROR: ./ex44f on a linux-gnu named cluster06 by xiao Wed Jan 22 11:52:08 2014 >>> [44]PETSC ERROR: Libraries linked from /home/xiao/Local/petsc-dev-debug/linux-gnu/lib >>> [44]PETSC ERROR: Configure run at Tue Jan 14 15:27:57 2014 >>> [44]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >>> [44]PETSC ERROR: ------------------------------------------------------------------------ >>> [44]PETSC ERROR: MatDestroy() line 1029 in src/mat/interface/matrix.c >>> >>> ________________________________________ >>> From: Barry Smith [bsmith at mcs.anl.gov] >>> Sent: Monday, January 20, 2014 8:37 PM >>> To: Xiao, Jianjun (IKET) >>> Cc: petsc-users at mcs.anl.gov; jedbrown at mcs.anl.gov >>> Subject: Re: [petsc-users] Error in creation of MPISBAIJ matrix with DMCreateMatrix >>> >>> Thanks for reporting the problem. This is our error. Could you please send us the code that generates the error so we can reproduce the problem, determine the cause and fix it. >>> >>> Barry >>> >>> We need to know the exact values of imax,jmax, kmax etc to reproduce the problem. >>> >>> >>> >>> On Jan 20, 2014, at 9:33 AM, Xiao, Jianjun (IKET) wrote: >>> >>>> Dear developers, >>>> >>>> I am using petsc-dev. I tried to create a MPISBAIJ matrix as shown below, and it seems that the matrix creation is sensitive to the number of processors. >>>> >>>> CALL DMDACreate3d(PETSC_COMM_WORLD,DMDA_BOUNDARY_NONE, & >>>> & DMDA_BOUNDARY_NONE,DMDA_BOUNDARY_NONE, & >>>> & DMDA_STENCIL_BOX,-imax,-jmax,-kmax,PETSC_DECIDE,PETSC_DECIDE,& >>>> & PETSC_DECIDE,1,1,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, & >>>> & PETSC_NULL_INTEGER,da,ierr) >>>> >>>> CALL DMSetMatType(da,MATMPISBAIJ,ierr) >>>> CALL DMCreateMatrix(da,mat,ierr) >>>> >>>> A cluster with 64 processors was used for the testing. >>>> >>>> When the number of procssors are 1,2,3,4,5,6,7,8,16,32 and 64, the code always works quite well. >>>> >>>> For some other numbers, the code works not so stable. Sometimes, the matrix was created successfully. Sometimes, it failed. >>>> >>>> When the number of procssors are 20, 33, 63 or some relatively bigger numbers , the code always got the error below. >>>> >>>> >>>> mpirun: [25]PETSC ERROR: --------------------- Error Message ------------------------------------ >>>> mpirun: [25]PETSC ERROR: Argument out of range! >>>> mpirun: [25]PETSC ERROR: New nonzero at (198,7038) caused a malloc! >>>> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >>>> mpirun: [25]PETSC ERROR: Petsc Development GIT revision: f7404d5510646a3c64be49fff6ce547efef07b3d GIT Date: 2013-11-27 00:12:54 +0100 >>>> mpirun: [25]PETSC ERROR: See docs/changes/index.html for recent updates. >>>> mpirun: [25]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>> mpirun: [25]PETSC ERROR: See docs/index.html for manual pages. >>>> mpirun: [25]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx --with-debugging=1 >>>> mpirun: [25]PETSC ERROR: ------------------------------------------------------------------------ >>>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_SeqBAIJ() line 1836 in src/mat/impls/baij/seq/baij.c >>>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked_MPISBAIJ() line 339 in src/mat/impls/sbaij/mpi/mpisbaij.c >>>> mpirun: [25]PETSC ERROR: MatSetValuesBlocked() line 1658 in src/mat/interface/matrix.c >>>> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA_3d_MPISBAIJ() line 1780 in src/dm/impls/da/fdda.c >>>> mpirun: [25]PETSC ERROR: DMCreateMatrix_DA() line 777 in src/dm/impls/da/fdda.c >>>> mpirun: [25]PETSC ERROR: DMCreateMatrix() line 1007 in src/dm/interface/dm.c >>>> >>>> Then I changed the matrix format to MATMPIBAIJ. DMCreateMatrix worked fine for any number of processors. >>>> >>>> CALL DMSetMatType(da,MATMPIBAIJ,ierr) >>>> CALL DMCreateMatrix(da,gfmat,ierr) >>>> >>>> Could you please let me know how can I fix this problem? If you need more information, please let me know. Thank you. >>>> >>>> JJ >>> >>> >> >> > From knepley at gmail.com Thu Jan 23 08:32:07 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 23 Jan 2014 08:32:07 -0600 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> Message-ID: On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells wrote: > Is there are command line option to set the number of iterations used for > the eigenvalue estimation inside the Chebyshev preconditioner? > "-gamg_est_ksp_max_it" does the trick with GAMG, but I'd also like to > change the number of iterations when using Chebyshev smoothing with ML. In GAMG, we use PETSc itself to do the estimate, and give it the prefix gamg_est_. In ML, as far as I can see from the code, we use the internal estimator, and I don't think they give us this knob. Matt > > Garth > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From gnw20 at cam.ac.uk Thu Jan 23 08:49:46 2014 From: gnw20 at cam.ac.uk (Garth N. Wells) Date: Thu, 23 Jan 2014 14:49:46 +0000 Subject: [petsc-users] =?utf-8?q?Command_line_option_to_set_number_iterati?= =?utf-8?q?ons_for_Chebyshev_eigenvalue_estimation=3F?= In-Reply-To: References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> Message-ID: <2062c2554a01e0428428eab50abdab72@cam.ac.uk> On 2014-01-23 14:32, Matthew Knepley wrote: > On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells > wrote: > >> Is there are command line option to set the number of iterations >> used for the eigenvalue estimation inside the Chebyshev >> preconditioner? ?"-gamg_est_ksp_max_it" does the trick with GAMG, >> but I'd also like to change the number of iterations when using >> Chebyshev smoothing with ML. > > In GAMG, we use PETSc itself to do the estimate, and give it the > prefix gamg_est_. In ML, as far as I can see from the code, we use the > internal > estimator, and I don't think they give us this knob. > I'm not so interested in the what happens inside ML, but the Chebyshev smoother that PETSc applies. With the default 10 GMRES iterations, the eigenvalue estimate is not good enough for my problem, which leads to the outer CG breaking down with an indefinite operator error. I can get it working by changing -mg_levels_ksp_chebyshev_estimate_eigenvalues but I'd rather do a few more iterations to get a better eigenvalue estimate. It would also be nice to be able to switch from GMRES to CG. I can do this with GAMG via "-gamg_est_ksp_type" Garth > ? ?Matt > ? > >> Garth > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener From dave.mayhem23 at gmail.com Thu Jan 23 08:54:38 2014 From: dave.mayhem23 at gmail.com (Dave May) Date: Thu, 23 Jan 2014 15:54:38 +0100 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: <2062c2554a01e0428428eab50abdab72@cam.ac.uk> References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> Message-ID: If you don't have any prefix set on the outer KSP, you should be able to simply do -mg_levels_ksp_type chebychev -mg_levels_ksp_chebychev_estimate_eigenvalues 0,0.2,0,1.1 -mg_levels_est_ksp_type cg -mg_levels_est_ksp_max_it X Cheers, Dave On 23 January 2014 15:49, Garth N. Wells wrote: > On 2014-01-23 14:32, Matthew Knepley wrote: > >> On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells >> wrote: >> >> Is there are command line option to set the number of iterations >>> used for the eigenvalue estimation inside the Chebyshev >>> preconditioner? "-gamg_est_ksp_max_it" does the trick with GAMG, >>> but I'd also like to change the number of iterations when using >>> Chebyshev smoothing with ML. >>> >> >> In GAMG, we use PETSc itself to do the estimate, and give it the >> prefix gamg_est_. In ML, as far as I can see from the code, we use the >> internal >> estimator, and I don't think they give us this knob. >> >> > I'm not so interested in the what happens inside ML, but the Chebyshev > smoother that PETSc applies. With the default 10 GMRES iterations, the > eigenvalue estimate is not good enough for my problem, which leads to the > outer CG breaking down with an indefinite operator error. > > I can get it working by changing > > -mg_levels_ksp_chebyshev_estimate_eigenvalues > > but I'd rather do a few more iterations to get a better eigenvalue > estimate. It would also be nice to be able to switch from GMRES to CG. I > can do this with GAMG via "-gamg_est_ksp_type" > > Garth > > > Matt >> >> >> Garth >>> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which >> their experiments lead. >> -- Norbert Wiener >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 23 08:56:03 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 23 Jan 2014 08:56:03 -0600 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> Message-ID: On Thu, Jan 23, 2014 at 8:54 AM, Dave May wrote: > If you don't have any prefix set on the outer KSP, you should be able to > simply do > > -mg_levels_ksp_type chebychev > -mg_levels_ksp_chebychev_estimate_eigenvalues 0,0.2,0,1.1 > -mg_levels_est_ksp_type cg > -mg_levels_est_ksp_max_it X > Are you sure the est_ is not specest_? Thanks, Matt > Cheers, > Dave > > > > > > On 23 January 2014 15:49, Garth N. Wells wrote: > >> On 2014-01-23 14:32, Matthew Knepley wrote: >> >>> On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells >>> wrote: >>> >>> Is there are command line option to set the number of iterations >>>> used for the eigenvalue estimation inside the Chebyshev >>>> preconditioner? "-gamg_est_ksp_max_it" does the trick with GAMG, >>>> but I'd also like to change the number of iterations when using >>>> Chebyshev smoothing with ML. >>>> >>> >>> In GAMG, we use PETSc itself to do the estimate, and give it the >>> prefix gamg_est_. In ML, as far as I can see from the code, we use the >>> internal >>> estimator, and I don't think they give us this knob. >>> >>> >> I'm not so interested in the what happens inside ML, but the Chebyshev >> smoother that PETSc applies. With the default 10 GMRES iterations, the >> eigenvalue estimate is not good enough for my problem, which leads to the >> outer CG breaking down with an indefinite operator error. >> >> I can get it working by changing >> >> -mg_levels_ksp_chebyshev_estimate_eigenvalues >> >> but I'd rather do a few more iterations to get a better eigenvalue >> estimate. It would also be nice to be able to switch from GMRES to CG. I >> can do this with GAMG via "-gamg_est_ksp_type" >> >> Garth >> >> >> Matt >>> >>> >>> Garth >>>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which >>> their experiments lead. >>> -- Norbert Wiener >>> >> > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Thu Jan 23 09:02:00 2014 From: dave.mayhem23 at gmail.com (Dave May) Date: Thu, 23 Jan 2014 16:02:00 +0100 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> Message-ID: It should be just "est". However, I misspelled "cheby". Those options should be -mg_levels_ksp_type chebyshev -mg_levels_ksp_chebyshev_estimate_eigenvalues 0,0.2,0,1.1 On 23 January 2014 15:56, Matthew Knepley wrote: > On Thu, Jan 23, 2014 at 8:54 AM, Dave May wrote: > >> If you don't have any prefix set on the outer KSP, you should be able to >> simply do >> >> -mg_levels_ksp_type chebychev >> -mg_levels_ksp_chebychev_estimate_eigenvalues 0,0.2,0,1.1 >> -mg_levels_est_ksp_type cg >> -mg_levels_est_ksp_max_it X >> > > Are you sure the est_ is not specest_? > > Thanks, > > Matt > > >> Cheers, >> Dave >> >> >> >> >> >> On 23 January 2014 15:49, Garth N. Wells wrote: >> >>> On 2014-01-23 14:32, Matthew Knepley wrote: >>> >>>> On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells >>>> wrote: >>>> >>>> Is there are command line option to set the number of iterations >>>>> used for the eigenvalue estimation inside the Chebyshev >>>>> preconditioner? "-gamg_est_ksp_max_it" does the trick with GAMG, >>>>> but I'd also like to change the number of iterations when using >>>>> Chebyshev smoothing with ML. >>>>> >>>> >>>> In GAMG, we use PETSc itself to do the estimate, and give it the >>>> prefix gamg_est_. In ML, as far as I can see from the code, we use the >>>> internal >>>> estimator, and I don't think they give us this knob. >>>> >>>> >>> I'm not so interested in the what happens inside ML, but the Chebyshev >>> smoother that PETSc applies. With the default 10 GMRES iterations, the >>> eigenvalue estimate is not good enough for my problem, which leads to the >>> outer CG breaking down with an indefinite operator error. >>> >>> I can get it working by changing >>> >>> -mg_levels_ksp_chebyshev_estimate_eigenvalues >>> >>> but I'd rather do a few more iterations to get a better eigenvalue >>> estimate. It would also be nice to be able to switch from GMRES to CG. I >>> can do this with GAMG via "-gamg_est_ksp_type" >>> >>> Garth >>> >>> >>> Matt >>>> >>>> >>>> Garth >>>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which >>>> their experiments lead. >>>> -- Norbert Wiener >>>> >>> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 23 09:09:28 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 23 Jan 2014 09:09:28 -0600 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> Message-ID: On Thu, Jan 23, 2014 at 9:02 AM, Dave May wrote: > It should be just "est". > I cannot explain https://bitbucket.org/petsc/petsc/src/82b87d87c781ccd50dbcf95f010f70771da1bbfc/src/ksp/ksp/impls/specest/specest.c?at=master#cl-130 or https://bitbucket.org/petsc/petsc/src/82b87d87c781ccd50dbcf95f010f70771da1bbfc/src/ksp/ksp/impls/specest/specest.c?at=master#cl-175 Matt > However, I misspelled "cheby". Those options should be > > -mg_levels_ksp_type chebyshev > -mg_levels_ksp_chebyshev_estimate_eigenvalues 0,0.2,0,1.1 > > > > > > > On 23 January 2014 15:56, Matthew Knepley wrote: > >> On Thu, Jan 23, 2014 at 8:54 AM, Dave May wrote: >> >>> If you don't have any prefix set on the outer KSP, you should be able to >>> simply do >>> >>> -mg_levels_ksp_type chebychev >>> -mg_levels_ksp_chebychev_estimate_eigenvalues 0,0.2,0,1.1 >>> -mg_levels_est_ksp_type cg >>> -mg_levels_est_ksp_max_it X >>> >> >> Are you sure the est_ is not specest_? >> >> Thanks, >> >> Matt >> >> >>> Cheers, >>> Dave >>> >>> >>> >>> >>> >>> On 23 January 2014 15:49, Garth N. Wells wrote: >>> >>>> On 2014-01-23 14:32, Matthew Knepley wrote: >>>> >>>>> On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells >>>>> wrote: >>>>> >>>>> Is there are command line option to set the number of iterations >>>>>> used for the eigenvalue estimation inside the Chebyshev >>>>>> preconditioner? "-gamg_est_ksp_max_it" does the trick with GAMG, >>>>>> but I'd also like to change the number of iterations when using >>>>>> Chebyshev smoothing with ML. >>>>>> >>>>> >>>>> In GAMG, we use PETSc itself to do the estimate, and give it the >>>>> prefix gamg_est_. In ML, as far as I can see from the code, we use the >>>>> internal >>>>> estimator, and I don't think they give us this knob. >>>>> >>>>> >>>> I'm not so interested in the what happens inside ML, but the Chebyshev >>>> smoother that PETSc applies. With the default 10 GMRES iterations, the >>>> eigenvalue estimate is not good enough for my problem, which leads to the >>>> outer CG breaking down with an indefinite operator error. >>>> >>>> I can get it working by changing >>>> >>>> -mg_levels_ksp_chebyshev_estimate_eigenvalues >>>> >>>> but I'd rather do a few more iterations to get a better eigenvalue >>>> estimate. It would also be nice to be able to switch from GMRES to CG. I >>>> can do this with GAMG via "-gamg_est_ksp_type" >>>> >>>> Garth >>>> >>>> >>>> Matt >>>>> >>>>> >>>>> Garth >>>>>> >>>>> >>>>> -- >>>>> What most experimenters take for granted before they begin their >>>>> experiments is infinitely more interesting than any results to which >>>>> their experiments lead. >>>>> -- Norbert Wiener >>>>> >>>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From gnw20 at cam.ac.uk Thu Jan 23 09:18:30 2014 From: gnw20 at cam.ac.uk (Garth N. Wells) Date: Thu, 23 Jan 2014 15:18:30 +0000 Subject: [petsc-users] =?utf-8?q?Command_line_option_to_set_number_iterati?= =?utf-8?q?ons_for_Chebyshev_eigenvalue_estimation=3F?= In-Reply-To: References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> Message-ID: <84a4aa185d6d999cd207842aef49a965@cam.ac.uk> On 2014-01-23 14:54, Dave May wrote: > If you don't have any prefix set on the outer KSP, you should be able > to simply do > > -mg_levels_ksp_type chebychev > -mg_levels_ksp_chebychev_estimate_eigenvalues 0,0.2,0,1.1 > -mg_levels_est_ksp_type cg > -mg_levels_est_ksp_max_it X > Thanks. Last two are what I was looking for and I can confirm that they work as expected. It would be helpful is last two options could be (easily) found in the docs - I couldn't find them. Garth > Cheers, > ? Dave > > On 23 January 2014 15:49, Garth N. Wells wrote: > >> On 2014-01-23 14:32, Matthew Knepley wrote: >> On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells >> wrote: >> >> Is there are command line option to set the number of iterations >> used for the eigenvalue estimation inside the Chebyshev >> preconditioner? ?"-gamg_est_ksp_max_it" does the trick with GAMG, >> but I'd also like to change the number of iterations when using >> Chebyshev smoothing with ML. >> >> In GAMG, we use PETSc itself to do the estimate, and give it the >> prefix gamg_est_. In ML, as far as I can see from the code, we use >> the >> internal >> estimator, and I don't think they give us this knob. > > I'm not so interested in the what happens inside ML, but the > Chebyshev smoother that PETSc applies. With the default 10 GMRES > iterations, the eigenvalue estimate is not good enough for my problem, > which leads to the outer CG breaking down with an indefinite operator > error. > > I can get it working by changing > > ? -mg_levels_ksp_chebyshev_estimate_eigenvalues > > but I'd rather do a few more iterations to get a better eigenvalue > estimate. It would also be nice to be able to switch from GMRES to CG. > I can do this with GAMG via "-gamg_est_ksp_type" > > Garth > >> ? ?Matt >> ? >> >>> Garth >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to >> which >> their experiments lead. >> ?-- Norbert Wiener From Wadud.Miah at awe.co.uk Thu Jan 23 10:05:30 2014 From: Wadud.Miah at awe.co.uk (Wadud.Miah at awe.co.uk) Date: Thu, 23 Jan 2014 16:05:30 +0000 Subject: [petsc-users] Upgrading from petsc 3.2-p7 to 3.3-p5 Message-ID: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> Hello petsc users, I have upgraded to PETSc 3.3-p5 from 3.2-p7 and my matrix assembly is failing (MatAssemblyBegin and MatAssemblyEnd). I am using MatMPIAIJSetPreallocation prior to calling MatSetValues. I have looked at the 3.3-p5 changelog and cannot find anything. Any help will be greatly appreciated. Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! Regards, Wadud. ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Thu Jan 23 10:13:27 2014 From: dave.mayhem23 at gmail.com (Dave May) Date: Thu, 23 Jan 2014 17:13:27 +0100 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: <84a4aa185d6d999cd207842aef49a965@cam.ac.uk> References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> <84a4aa185d6d999cd207842aef49a965@cam.ac.uk> Message-ID: Great To be honest, I think the only way to "find" these options is to either do one of the following: 1) Run with -ksp_view and very carefully go through the hierarchy of the multi-level preconditioner. This immediately shows the prefixes of nested objects (like "est") and then you can see how to configure those nested objects. 2) When I have no idea what prefixes might be defined in a petsc code, I run with -help and trawl through it. Once I have isolated a prefix of interest, I use -help and grep to narrow down all the options which are connected with that particular solver. These are the only ways I know how to explore very complicated solver configurations. As you can see, I miss spell option names from time to time. Thus when debugging solver configuration, I also always use -options_left 1 to indicate whether I used an option that PETSc didn't recgonize. Cheers, Dave On 23 January 2014 16:18, Garth N. Wells wrote: > On 2014-01-23 14:54, Dave May wrote: > >> If you don't have any prefix set on the outer KSP, you should be able >> to simply do >> >> -mg_levels_ksp_type chebychev >> -mg_levels_ksp_chebychev_estimate_eigenvalues 0,0.2,0,1.1 >> -mg_levels_est_ksp_type cg >> -mg_levels_est_ksp_max_it X >> >> > Thanks. Last two are what I was looking for and I can confirm that they > work as expected. > > It would be helpful is last two options could be (easily) found in the > docs - I couldn't find them. > > Garth > > > Cheers, >> Dave >> >> On 23 January 2014 15:49, Garth N. Wells wrote: >> >> On 2014-01-23 14:32, Matthew Knepley wrote: >>> On Thu, Jan 23, 2014 at 5:35 AM, Garth N. Wells >>> wrote: >>> >>> Is there are command line option to set the number of iterations >>> used for the eigenvalue estimation inside the Chebyshev >>> preconditioner? "-gamg_est_ksp_max_it" does the trick with GAMG, >>> but I'd also like to change the number of iterations when using >>> Chebyshev smoothing with ML. >>> >>> In GAMG, we use PETSc itself to do the estimate, and give it the >>> prefix gamg_est_. In ML, as far as I can see from the code, we use >>> the >>> internal >>> estimator, and I don't think they give us this knob. >>> >> >> I'm not so interested in the what happens inside ML, but the >> Chebyshev smoother that PETSc applies. With the default 10 GMRES >> iterations, the eigenvalue estimate is not good enough for my problem, >> which leads to the outer CG breaking down with an indefinite operator >> error. >> >> I can get it working by changing >> >> -mg_levels_ksp_chebyshev_estimate_eigenvalues >> >> but I'd rather do a few more iterations to get a better eigenvalue >> estimate. It would also be nice to be able to switch from GMRES to CG. >> I can do this with GAMG via "-gamg_est_ksp_type" >> >> Garth >> >> Matt >>> >>> >>> Garth >>>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to >>> which >>> their experiments lead. >>> -- Norbert Wiener >>> >> -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 23 10:20:35 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 23 Jan 2014 10:20:35 -0600 Subject: [petsc-users] Upgrading from petsc 3.2-p7 to 3.3-p5 In-Reply-To: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> References: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> Message-ID: On Thu, Jan 23, 2014 at 10:05 AM, wrote: > Hello petsc users, > > > > I have upgraded to PETSc 3.3-p5 from 3.2-p7 and my matrix assembly is > failing (MatAssemblyBegin and MatAssemblyEnd). I am using > MatMPIAIJSetPreallocation prior to calling MatSetValues. I have looked at > the 3.3-p5 changelog and cannot find anything. Any help will be greatly > appreciated. Please reply to wadud.miah at awe.co.uk with a reply as my > email header gets re-written for some strange reason! > Always send the full error message. Matt > > > Regards, > > Wadud. > > ___________________________________________________ > ____________________________ The information in this email and in any > attachment(s) is commercial in confidence. If you are not the named > addressee(s) or if you receive this email in error then any distribution, > copying or use of this communication or the information in it is strictly > prohibited. Please notify us immediately by email at admin.internet(at) > awe.co.uk, and then delete this message from your computer. While > attachments are virus checked, AWE plc does not accept any liability in > respect of any virus which is not detected. AWE Plc Registered in England > and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Thu Jan 23 10:22:34 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 23 Jan 2014 09:22:34 -0700 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: <2062c2554a01e0428428eab50abdab72@cam.ac.uk> References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> Message-ID: <87iota7jn9.fsf@jedbrown.org> "Garth N. Wells" writes: > but I'd rather do a few more iterations to get a better eigenvalue > estimate. -gamg_est_ksp_max_it 20 > It would also be nice to be able to switch from GMRES to CG. I can do > this with GAMG via "-gamg_est_ksp_type" -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jed at jedbrown.org Thu Jan 23 10:26:07 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 23 Jan 2014 09:26:07 -0700 Subject: [petsc-users] Command line option to set number iterations for Chebyshev eigenvalue estimation? In-Reply-To: References: <3a916b4ed2c639c6ba4b8424f2f962e4@cam.ac.uk> <2062c2554a01e0428428eab50abdab72@cam.ac.uk> Message-ID: <87fvoe7jhc.fsf@jedbrown.org> Matthew Knepley writes: > On Thu, Jan 23, 2014 at 8:54 AM, Dave May wrote: > >> If you don't have any prefix set on the outer KSP, you should be able to >> simply do >> >> -mg_levels_ksp_type chebychev >> -mg_levels_ksp_chebychev_estimate_eigenvalues 0,0.2,0,1.1 this would be "chebyshev" (many people have pointed out that we should have set aliases for these). >> -mg_levels_est_ksp_type cg >> -mg_levels_est_ksp_max_it X >> > > Are you sure the est_ is not specest_? Yes, specest is something else and should probably be removed (at least marked deprecated; it works and we haven't touched the code since Hong changed the spelling) since its functionality was rolled into KSPCHEBYSHEV. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From Wadud.Miah at awe.co.uk Thu Jan 23 10:38:05 2014 From: Wadud.Miah at awe.co.uk (Wadud.Miah at awe.co.uk) Date: Thu, 23 Jan 2014 16:38:05 +0000 Subject: [petsc-users] EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 In-Reply-To: References: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> Message-ID: <201401231638.s0NGcBQA031800@msw2.awe.co.uk> Hi Matthew, I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. Am I missing something in 3.3-p5? Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! Regards, Wadud. ________________________________ From: Matthew Knepley [mailto:knepley at gmail.com] Sent: 23 January 2014 16:21 To: Miah Wadud AWE Cc: petsc-users at mcs.anl.gov Subject: EXTERNAL: Re: [petsc-users] Upgrading from petsc 3.2-p7 to 3.3-p5 On Thu, Jan 23, 2014 at 10:05 AM, > wrote: Hello petsc users, I have upgraded to PETSc 3.3-p5 from 3.2-p7 and my matrix assembly is failing (MatAssemblyBegin and MatAssemblyEnd). I am using MatMPIAIJSetPreallocation prior to calling MatSetValues. I have looked at the 3.3-p5 changelog and cannot find anything. Any help will be greatly appreciated. Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! Always send the full error message. Matt Regards, Wadud. ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Thu Jan 23 10:44:58 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Thu, 23 Jan 2014 10:44:58 -0600 Subject: [petsc-users] EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 In-Reply-To: <201401231638.s0NGcBQA031800@msw2.awe.co.uk> References: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> <201401231638.s0NGcBQA031800@msw2.awe.co.uk> Message-ID: > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. 1. It appears you are not using CHKERRQ() on your calls to PETSc routines. [yeah its combersome from fortran - so the petsc examples don't have it - but that will print the complete error trace]. 2. The latest petsc version is 3.4 - suggest upgrading your code to it. 3. from http://www.mcs.anl.gov/petsc/documentation/changes/33.html >>>> Preallocation routines now automatically set MAT_NEW_NONZERO_ALLOCATION_ERR, if you intentionally preallocate less than necessary then use MatSetOption(mat,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE) to disable the error generation. <<<< Satish On Thu, 23 Jan 2014, Wadud.Miah at awe.co.uk wrote: > Hi Matthew, > > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. Am I missing something in 3.3-p5? Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > Regards, > Wadud. > > ________________________________ > From: Matthew Knepley [mailto:knepley at gmail.com] > Sent: 23 January 2014 16:21 > To: Miah Wadud AWE > Cc: petsc-users at mcs.anl.gov > Subject: EXTERNAL: Re: [petsc-users] Upgrading from petsc 3.2-p7 to 3.3-p5 > > On Thu, Jan 23, 2014 at 10:05 AM, > wrote: > Hello petsc users, > > I have upgraded to PETSc 3.3-p5 from 3.2-p7 and my matrix assembly is failing (MatAssemblyBegin and MatAssemblyEnd). I am using MatMPIAIJSetPreallocation prior to calling MatSetValues. I have looked at the 3.3-p5 changelog and cannot find anything. Any help will be greatly appreciated. Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > Always send the full error message. > > Matt > > > Regards, > Wadud. > > ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR > > > > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > -- Norbert Wiener > > > ___________________________________________________ > ____________________________ > > The information in this email and in any attachment(s) is > commercial in confidence. If you are not the named addressee(s) > or > if you receive this email in error then any distribution, copying or > use of this communication or the information in it is strictly > prohibited. Please notify us immediately by email at > admin.internet(at)awe.co.uk, and then delete this message from > your computer. While attachments are virus checked, AWE plc > does not accept any liability in respect of any virus which is not > detected. > > AWE Plc > Registered in England and Wales > Registration No 02763902 > AWE, Aldermaston, Reading, RG7 4PR > From Wadud.Miah at awe.co.uk Thu Jan 23 11:27:29 2014 From: Wadud.Miah at awe.co.uk (Wadud.Miah at awe.co.uk) Date: Thu, 23 Jan 2014 17:27:29 +0000 Subject: [petsc-users] EXTERNAL: Re: EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 In-Reply-To: References: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> <201401231638.s0NGcBQA031800@msw2.awe.co.uk> Message-ID: <201401231727.s0NHRapa003290@msw1.awe.co.uk> Hi Satish, How do you call that check subroutine in Fortran? Regards, Wadud. -----Original Message----- From: Satish Balay [mailto:balay at mcs.anl.gov] Sent: 23 January 2014 16:45 To: Miah Wadud AWE Cc: knepley at gmail.com; petsc-users at mcs.anl.gov Subject: EXTERNAL: Re: [petsc-users] EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. 1. It appears you are not using CHKERRQ() on your calls to PETSc routines. [yeah its combersome from fortran - so the petsc examples don't have it - but that will print the complete error trace]. 2. The latest petsc version is 3.4 - suggest upgrading your code to it. 3. from http://www.mcs.anl.gov/petsc/documentation/changes/33.html >>>> Preallocation routines now automatically set MAT_NEW_NONZERO_ALLOCATION_ERR, if you intentionally preallocate less than necessary then use MatSetOption(mat,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE) to disable the error generation. <<<< Satish On Thu, 23 Jan 2014, Wadud.Miah at awe.co.uk wrote: > Hi Matthew, > > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. Am I missing something in 3.3-p5? Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > Regards, > Wadud. > > ________________________________ > From: Matthew Knepley [mailto:knepley at gmail.com] > Sent: 23 January 2014 16:21 > To: Miah Wadud AWE > Cc: petsc-users at mcs.anl.gov > Subject: EXTERNAL: Re: [petsc-users] Upgrading from petsc 3.2-p7 to 3.3-p5 > > On Thu, Jan 23, 2014 at 10:05 AM, > wrote: > Hello petsc users, > > I have upgraded to PETSc 3.3-p5 from 3.2-p7 and my matrix assembly is failing (MatAssemblyBegin and MatAssemblyEnd). I am using MatMPIAIJSetPreallocation prior to calling MatSetValues. I have looked at the 3.3-p5 changelog and cannot find anything. Any help will be greatly appreciated. Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > Always send the full error message. > > Matt > > > Regards, > Wadud. > > ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR > > > > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > -- Norbert Wiener > > > ___________________________________________________ > ____________________________ > > The information in this email and in any attachment(s) is > commercial in confidence. If you are not the named addressee(s) > or > if you receive this email in error then any distribution, copying or > use of this communication or the information in it is strictly > prohibited. Please notify us immediately by email at > admin.internet(at)awe.co.uk, and then delete this message from > your computer. While attachments are virus checked, AWE plc > does not accept any liability in respect of any virus which is not > detected. > > AWE Plc > Registered in England and Wales > Registration No 02763902 > AWE, Aldermaston, Reading, RG7 4PR > ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR From balay at mcs.anl.gov Thu Jan 23 11:31:49 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Thu, 23 Jan 2014 11:31:49 -0600 Subject: [petsc-users] EXTERNAL: Re: EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 In-Reply-To: <201401231727.s0NHRapa003290@msw1.awe.co.uk> References: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> <201401231638.s0NGcBQA031800@msw2.awe.co.uk> <201401231727.s0NHRapa003290@msw1.awe.co.uk> Message-ID: An example with CHKERRQ() usage is at: http://www.mcs.anl.gov/petsc/petsc-current/src/vec/is/is/examples/tests/ex1f.F Satish On Thu, 23 Jan 2014, Wadud.Miah at awe.co.uk wrote: > Hi Satish, > > How do you call that check subroutine in Fortran? > > Regards, > Wadud. > > -----Original Message----- > From: Satish Balay [mailto:balay at mcs.anl.gov] > Sent: 23 January 2014 16:45 > To: Miah Wadud AWE > Cc: knepley at gmail.com; petsc-users at mcs.anl.gov > Subject: EXTERNAL: Re: [petsc-users] EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 > > > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. > > > 1. It appears you are not using CHKERRQ() on your calls to PETSc routines. > > [yeah its combersome from fortran - so the petsc examples don't have > it - but that will print the complete error trace]. > > 2. The latest petsc version is 3.4 - suggest upgrading your code to it. > > 3. from http://www.mcs.anl.gov/petsc/documentation/changes/33.html > > >>>> > Preallocation routines now automatically set > MAT_NEW_NONZERO_ALLOCATION_ERR, if you intentionally preallocate less > than necessary then use > MatSetOption(mat,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE) to > disable the error generation. > <<<< > > Satish > > > On Thu, 23 Jan 2014, Wadud.Miah at awe.co.uk wrote: > > > Hi Matthew, > > > > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. Am I missing something in 3.3-p5? Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > > > Regards, > > Wadud. > > > > ________________________________ > > From: Matthew Knepley [mailto:knepley at gmail.com] > > Sent: 23 January 2014 16:21 > > To: Miah Wadud AWE > > Cc: petsc-users at mcs.anl.gov > > Subject: EXTERNAL: Re: [petsc-users] Upgrading from petsc 3.2-p7 to 3.3-p5 > > > > On Thu, Jan 23, 2014 at 10:05 AM, > wrote: > > Hello petsc users, > > > > I have upgraded to PETSc 3.3-p5 from 3.2-p7 and my matrix assembly is failing (MatAssemblyBegin and MatAssemblyEnd). I am using MatMPIAIJSetPreallocation prior to calling MatSetValues. I have looked at the 3.3-p5 changelog and cannot find anything. Any help will be greatly appreciated. Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > > > Always send the full error message. > > > > Matt > > > > > > Regards, > > Wadud. > > > > ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR > > > > > > > > -- > > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > > -- Norbert Wiener > > > > > > ___________________________________________________ > > ____________________________ > > > > The information in this email and in any attachment(s) is > > commercial in confidence. If you are not the named addressee(s) > > or > > if you receive this email in error then any distribution, copying or > > use of this communication or the information in it is strictly > > prohibited. Please notify us immediately by email at > > admin.internet(at)awe.co.uk, and then delete this message from > > your computer. While attachments are virus checked, AWE plc > > does not accept any liability in respect of any virus which is not > > detected. > > > > AWE Plc > > Registered in England and Wales > > Registration No 02763902 > > AWE, Aldermaston, Reading, RG7 4PR > > > > > ___________________________________________________ > ____________________________ > > The information in this email and in any attachment(s) is > commercial in confidence. If you are not the named addressee(s) > or > if you receive this email in error then any distribution, copying or > use of this communication or the information in it is strictly > prohibited. Please notify us immediately by email at > admin.internet(at)awe.co.uk, and then delete this message from > your computer. While attachments are virus checked, AWE plc > does not accept any liability in respect of any virus which is not > detected. > > AWE Plc > Registered in England and Wales > Registration No 02763902 > AWE, Aldermaston, Reading, RG7 4PR > From Wadud.Miah at awe.co.uk Thu Jan 23 12:17:55 2014 From: Wadud.Miah at awe.co.uk (Wadud.Miah at awe.co.uk) Date: Thu, 23 Jan 2014 18:17:55 +0000 Subject: [petsc-users] EXTERNAL: Re: EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 In-Reply-To: References: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> <201401231638.s0NGcBQA031800@msw2.awe.co.uk> Message-ID: <201401231817.s0NIHxAa015917@msw2.awe.co.uk> Hi Satish, When should the subroutine: MatSetOption( mat,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE ) be called? I currently have the following calling sequence: 1. MatCreate 2. MatSetSizes 3. MatSetType 4. MatMPIAIJSetPreallocation 5. MatSetValues 6. MatAssemblyBegin 7. MatAssemblyEnd Regards, Wadud. -----Original Message----- From: Satish Balay [mailto:balay at mcs.anl.gov] Sent: 23 January 2014 16:45 To: Miah Wadud AWE Cc: knepley at gmail.com; petsc-users at mcs.anl.gov Subject: EXTERNAL: Re: [petsc-users] EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. 1. It appears you are not using CHKERRQ() on your calls to PETSc routines. [yeah its combersome from fortran - so the petsc examples don't have it - but that will print the complete error trace]. 2. The latest petsc version is 3.4 - suggest upgrading your code to it. 3. from http://www.mcs.anl.gov/petsc/documentation/changes/33.html >>>> Preallocation routines now automatically set MAT_NEW_NONZERO_ALLOCATION_ERR, if you intentionally preallocate less than necessary then use MatSetOption(mat,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE) to disable the error generation. <<<< Satish On Thu, 23 Jan 2014, Wadud.Miah at awe.co.uk wrote: > Hi Matthew, > > I get a non-zero error code from the MatAssemblyBegin/End but nothing gets printed. Am I missing something in 3.3-p5? Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > Regards, > Wadud. > > ________________________________ > From: Matthew Knepley [mailto:knepley at gmail.com] > Sent: 23 January 2014 16:21 > To: Miah Wadud AWE > Cc: petsc-users at mcs.anl.gov > Subject: EXTERNAL: Re: [petsc-users] Upgrading from petsc 3.2-p7 to 3.3-p5 > > On Thu, Jan 23, 2014 at 10:05 AM, > wrote: > Hello petsc users, > > I have upgraded to PETSc 3.3-p5 from 3.2-p7 and my matrix assembly is failing (MatAssemblyBegin and MatAssemblyEnd). I am using MatMPIAIJSetPreallocation prior to calling MatSetValues. I have looked at the 3.3-p5 changelog and cannot find anything. Any help will be greatly appreciated. Please reply to wadud.miah at awe.co.uk with a reply as my email header gets re-written for some strange reason! > > Always send the full error message. > > Matt > > > Regards, > Wadud. > > ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR > > > > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > -- Norbert Wiener > > > ___________________________________________________ > ____________________________ > > The information in this email and in any attachment(s) is > commercial in confidence. If you are not the named addressee(s) > or > if you receive this email in error then any distribution, copying or > use of this communication or the information in it is strictly > prohibited. Please notify us immediately by email at > admin.internet(at)awe.co.uk, and then delete this message from > your computer. While attachments are virus checked, AWE plc > does not accept any liability in respect of any virus which is not > detected. > > AWE Plc > Registered in England and Wales > Registration No 02763902 > AWE, Aldermaston, Reading, RG7 4PR > ___________________________________________________ ____________________________ The information in this email and in any attachment(s) is commercial in confidence. If you are not the named addressee(s) or if you receive this email in error then any distribution, copying or use of this communication or the information in it is strictly prohibited. Please notify us immediately by email at admin.internet(at)awe.co.uk, and then delete this message from your computer. While attachments are virus checked, AWE plc does not accept any liability in respect of any virus which is not detected. AWE Plc Registered in England and Wales Registration No 02763902 AWE, Aldermaston, Reading, RG7 4PR From jed at jedbrown.org Thu Jan 23 12:24:32 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 23 Jan 2014 11:24:32 -0700 Subject: [petsc-users] EXTERNAL: Re: EXTERNAL: Re: Upgrading from petsc 3.2-p7 to 3.3-p5 In-Reply-To: <201401231817.s0NIHxAa015917@msw2.awe.co.uk> References: <201401231605.s0NG5ZXv009594@msw2.awe.co.uk> <201401231638.s0NGcBQA031800@msw2.awe.co.uk> <201401231817.s0NIHxAa015917@msw2.awe.co.uk> Message-ID: <87eh3y5zfj.fsf@jedbrown.org> Wadud.Miah at awe.co.uk writes: > Hi Satish, > > When should the subroutine: > > MatSetOption( mat,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE ) > > be called? I currently have the following calling sequence: > > 1. MatCreate > 2. MatSetSizes > 3. MatSetType > 4. MatMPIAIJSetPreallocation here > 5. MatSetValues > 6. MatAssemblyBegin > 7. MatAssemblyEnd -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From danyang.su at gmail.com Thu Jan 23 12:45:22 2014 From: danyang.su at gmail.com (Danyang Su) Date: Thu, 23 Jan 2014 10:45:22 -0800 Subject: [petsc-users] Questions on dense and sparse matrix block In-Reply-To: <3D9DB164-612D-48F4-8B2C-EF22C37A4109@mcs.anl.gov> References: <52E0260F.8050902@gmail.com> <980588F0-EC2F-4338-8982-DFD0EE9C02C3@mcs.anl.gov> <52E04EA8.9080603@gmail.com> <0C956241-1A0A-4AD2-A10D-1E7423447C03@mcs.anl.gov> <52E06D22.2080009@gmail.com> <52E07B20.2020902@gmail.com> <3D9DB164-612D-48F4-8B2C-EF22C37A4109@mcs.anl.gov> Message-ID: <52E16342.1020501@gmail.com> Hi Barry, This case is a 1D steady state flow with time dependent chemical reactions. The flow part is solved before the first time step and then the reaction part will be solved in the time loop. Part of the matrix for reaction is shown below (png file). Each matrix block represent a cell. The block is of size 10x10, representing 10 components that will take part in reactions. The blue color is positive and the red color is negative. This is the first reaction matrix, the value of the matrix will be changed but the structured will be kept. If I fill the missing entries (white) with zero to make the sparse block into dense block, the problem can be solved without any problem. Please note that the whole matrix is treated as a general sparse matrix. No block matrix features are used in PETSc at present. When '-pc_type lu' is used, there will be error showing detected zero pivot in LU factorization. I can check and exported all the matrices if needed Matrix sample Thanks and regards, Danyang On 22/01/2014 6:52 PM, Barry Smith wrote: > That is unfortunate. You may need a good preconditioning strategy. Can you tell us more about your problem? Do you have some fluid variables that couple between cells and then chemistry in each cell. > > Barry > > > On Jan 22, 2014, at 8:14 PM, Danyang Su wrote: > >> with option '-pc_type lu', I got an error message after some steps. >> >> [0]PETSC ERROR: --------------------- Error Message ------------------------------------ >> [0]PETSC ERROR: Detected zero pivot in LU factorization: >> see http://www.mcs.anl.gov/petsc/documentation/faq.html#ZeroPivot! >> [0]PETSC ERROR: Zero pivot row 5 value 7.63923e-045 tolerance 2.22045e-014! >> >> Danyang >> >> On 22/01/2014 5:28 PM, Barry Smith wrote: >>> With a 1d problem likely the sparse format and -pc_type lu is the way to go. >>> >>> Barry >>> >>> On Jan 22, 2014, at 7:15 PM, Danyang Su wrote: >>> >>>> On 22/01/2014 4:32 PM, Barry Smith wrote: >>>>> What ODE integrator are you using? Your own? One in PETSc? >>>> I use my own integrator and PETSc is used as KSP solver. I may need to test more cases especially 2D cases to see the behavior of dense format and sparse format. >>>>> You could just use -pc_type lu and the sparse format right? Or is that too slow? >>>>> >>>>> Barry >>>>> >>>>> Jed and Emil, do we have any integrators that keep the time-step small due to slow convergence of Newton in TS? >>>>> >>>>> >>>>> On Jan 22, 2014, at 5:05 PM, Danyang Su wrote: >>>>> >>>>>> On 22/01/2014 1:42 PM, Barry Smith wrote: >>>>>>> Linear solvers based on ILU will behave very differently when extra zeros are kept in the matrix; they generally converge much faster because the ILU behaves more like an LU (especially in 1d). So first run one 1 process with dense and sparse formats and -pc_type lu; do they behave differently? (they pretty much shouldn?t). >>>>>> It does not behave differently with the option '-pc_type lu'. >>>>>>> Next run the sparse format version with -ksp_monitor_true_residual and see how the solver is converging compared to the dense format version. >>>>>> The converging is quite different. >>>>>> ---Sparse format >>>>>> 0 KSP preconditioned resid norm 5.242977405897e-004 true resid norm 3.927123490361e-006 ||r(i)||/||b|| 1.000000000000e+000 >>>>>> 1 KSP preconditioned resid norm 6.118580743238e-006 true resid norm 2.917502282301e-008 ||r(i)||/||b|| 7.429107562985e-003 >>>>>> 2 KSP preconditioned resid norm 9.271130393116e-007 true resid norm 9.649272009380e-009 ||r(i)||/||b|| 2.457083927476e-003 >>>>>> 3 KSP preconditioned resid norm 5.812641606714e-009 true resid norm 4.073757311146e-011 ||r(i)||/||b|| 1.037338734355e-005 >>>>>> 4 KSP preconditioned resid norm 1.992914862465e-010 true resid norm 1.261636843933e-012 ||r(i)||/||b|| 3.212623303112e-007 >>>>>> 5 KSP preconditioned resid norm 1.422122839379e-012 true resid norm 2.393761421284e-014 ||r(i)||/||b|| 6.095457469466e-009 >>>>>> ---Dense format >>>>>> 0 KSP preconditioned resid norm 2.948306125658e+000 true resid norm 2.436662454678e-004 ||r(i)||/||b|| 1.000000000000e+000 >>>>>> 1 KSP preconditioned resid norm 9.798852520841e-015 true resid norm 1.267168968393e-018 ||r(i)||/||b|| 5.200428832315e-015 >>>>>> >>>>>> The convergence seems difficult for the sparse format and the number of outer newton iteration is usually much larger than dense format. >>>>>> So the time step cannot increase due to this. >>>>>> >>>>>> Thanks, >>>>>> >>>>>> Danyang >>>>>>> Barry >>>>>>> >>>>>>> On Jan 22, 2014, at 2:11 PM, Danyang Su wrote: >>>>>>> >>>>>>>> Dear All, >>>>>>>> >>>>>>>> I have a reactive transport problem that use block matrices. Each block can be dense with a lot of zero entries or sparse without zero entries. The model has been tested for a 1D reactive transport problem. When dense block is used, it works well and time step can be increased gradually to reach a maximum time step, but when sparse block is used, the time step remains at a small value. I checked the entries for both dense blocks and sparse blocks (A), they have the same non-zero entries. With the same RHS (b), the solution (X) is a little different, but seems acceptable. The first matrix with both dense blocks and sparse blocks has been attached. The matrix is exported in matrix market exchange format (.mtp). >>>>>>>> >>>>>>>> I wonder if this is caused by the outer newton iteration or the solver as this is not a general problem. This problem only occurs in some cases. >>>>>>>> >>>>>>>> Does anyone run into this problem before? >>>>>>>> >>>>>>>> Thanks and regards, >>>>>>>> >>>>>>>> Danyang >>>>>>>> -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: a_reactran_rt_1_part.PNG Type: image/png Size: 13750 bytes Desc: not available URL: From vtsien at alcf.anl.gov Thu Jan 23 12:53:05 2014 From: vtsien at alcf.anl.gov (Tsien, Victor) Date: Thu, 23 Jan 2014 18:53:05 +0000 Subject: [petsc-users] FW: [alcf-support #195845] PETSc compilation In-Reply-To: References: , Message-ID: petsc group, Can you help? Thanks, Victor ________________________________________ From: Mauri Ponga [mponga at caltech.edu] Sent: Wednesday, January 22, 2014 5:46 PM To: support at alcf.anl.gov Subject: [alcf-support #195845] PETSc compilation User info for mponga at caltech.edu ================================= Username: ponga Full Name: Mauricio Ponga Projects: ATPESC2013 ('*' denotes INCITE projects) ================================= Hi, I am trying to compile my program in VESTA. In order to compile it I need PETSc. However, I am using a old version (petsc-3.0.0-p8) which I am trying to configure and compile in my user account. I used the following options: ./configure --prefix=/soft/libraries/petsc/3.3-p2/xl-opt --with-batch=1 --with-blacs-include=/soft/libraries/alcf/current/xl/SCALAPACK/ --with-blacs-lib=/soft/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a --with-blas-lapack-lib="-L/soft/libraries/alcf/current/xl/LAPACK/lib -llapack -L/soft/libraries/alcf/current/xl/BLAS/lib -lblas" --with-cc=mpixlc_r --with-cxx=mpixlcxx_r --with-debugging=0 --with-fc="mpixlf77_r -qnosave" --with-fortran-kernels=1 --with-is-color-value-type=short --with-scalapack-include=/soft/libraries/alcf/current/xl/SCALAPACK/ --with-scalapack-lib=/soft/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a --with-shared-libraries=0 --with-x=0 -COPTFLAGS=" -O3 -qhot=level=0 -qsimd=auto -qmaxmem=-1 -qstrict -qstrict_induction" -CXXOPTFLAGS=" -O3 -qhot=level=0 -qsimd=auto -qmaxmem=-1 -qstrict -qstrict_induction" -FOPTFLAGS=" -O3 -qhot=level=0 -qsimd=auto -qmaxmem=-1 -qstrict -qstrict_induction" PETSC_ARCH=arch-bgq-ibm-opt with-mpi-shared=0 Configuration finished fine, but at the end of the script appear the following message ================================================================================= Since your compute nodes require use of a batch system or mpiexec you must: 1) Submit ./conftest to 1 processor of your batch system or system you are cross-compiling for; this will generate the file reconfigure.py 2) Run ./reconfigure.py (to complete the configure process). ================================================================================= I tried to run the command ./conftest using jobscript.sh (in /home/ponga/petsc-3.0.0-p8) but the following message appears: ponga is not a member of MM-MEDE Projects available: ATPESC2013 For assistance, contact support at alcf.anl.gov Filter /soft/cobalt/scripts/clusterbank-account failed So, I wonder if you can change me to the project MM-MEDE which I am member (and also PI). Also I wonder if I am following the right steps to configure PETSc in my user account. Thank you. Mauricio Ponga From balay at mcs.anl.gov Thu Jan 23 13:33:19 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Thu, 23 Jan 2014 13:33:19 -0600 Subject: [petsc-users] FW: [alcf-support #195845] PETSc compilation In-Reply-To: References: , Message-ID: After getting allocation [for you project] you can continue following suggestions printed by configure below - and run 'conftest' on a node. The option '--prefix=/soft/libraries/petsc/3.3-p2/xl-opt' doesn't make sense for your install. It can be removed. And you can remove blacs/scalapack options aswell [If you are not using mumps from PETSc - you don't need blacs/scalapack]. PETSc primarily requires MPI and blas/lapack. We generally recommend upgrading user codes to latest petsc versions [it will have bugfixes for issues you might encounter] Satish On Thu, 23 Jan 2014, Tsien, Victor wrote: > petsc group, > > Can you help? > > Thanks, > > Victor > ________________________________________ > From: Mauri Ponga [mponga at caltech.edu] > Sent: Wednesday, January 22, 2014 5:46 PM > To: support at alcf.anl.gov > Subject: [alcf-support #195845] PETSc compilation > > User info for mponga at caltech.edu > ================================= > Username: ponga > Full Name: Mauricio Ponga > Projects: ATPESC2013 > ('*' denotes INCITE projects) > ================================= > > > Hi, > > I am trying to compile my program in VESTA. In order to compile it I need > PETSc. However, I am using a old version (petsc-3.0.0-p8) which I am trying > to configure and compile in my user account. I used the following options: > > ./configure --prefix=/soft/libraries/petsc/3.3-p2/xl-opt --with-batch=1 > --with-blacs-include=/soft/libraries/alcf/current/xl/SCALAPACK/ > --with-blacs-lib=/soft/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a > --with-blas-lapack-lib="-L/soft/libraries/alcf/current/xl/LAPACK/lib > -llapack -L/soft/libraries/alcf/current/xl/BLAS/lib -lblas" > --with-cc=mpixlc_r --with-cxx=mpixlcxx_r --with-debugging=0 > --with-fc="mpixlf77_r -qnosave" --with-fortran-kernels=1 > --with-is-color-value-type=short > --with-scalapack-include=/soft/libraries/alcf/current/xl/SCALAPACK/ > --with-scalapack-lib=/soft/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a > --with-shared-libraries=0 --with-x=0 -COPTFLAGS=" -O3 -qhot=level=0 > -qsimd=auto -qmaxmem=-1 -qstrict -qstrict_induction" -CXXOPTFLAGS=" -O3 > -qhot=level=0 -qsimd=auto -qmaxmem=-1 -qstrict -qstrict_induction" > -FOPTFLAGS=" -O3 -qhot=level=0 -qsimd=auto -qmaxmem=-1 -qstrict > -qstrict_induction" PETSC_ARCH=arch-bgq-ibm-opt with-mpi-shared=0 > > Configuration finished fine, but at the end of the script appear the > following message > > ================================================================================= > > Since your compute nodes require use of a batch system or mpiexec you > must: > 1) Submit ./conftest to 1 processor of your batch system or system you > are > cross-compiling for; this will generate the file > reconfigure.py > 2) Run ./reconfigure.py (to complete the configure > process). > ================================================================================= > > I tried to run the command ./conftest using jobscript.sh (in > /home/ponga/petsc-3.0.0-p8) but the following message appears: > > ponga is not a member of MM-MEDE > Projects available: ATPESC2013 > For assistance, contact support at alcf.anl.gov > Filter /soft/cobalt/scripts/clusterbank-account failed > > > So, I wonder if you can change me to the project MM-MEDE which I am member > (and also PI). Also I wonder if I am following the right steps to configure > PETSc in my user account. > > Thank you. > > Mauricio Ponga > > From bsmith at mcs.anl.gov Thu Jan 23 13:35:32 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 23 Jan 2014 13:35:32 -0600 Subject: [petsc-users] FW: [alcf-support #195845] PETSc compilation In-Reply-To: References: , Message-ID: Nothing for us to do. > ponga is not a member of MM-MEDE > Projects available: ATPESC2013 > For assistance, contact support at alcf.anl.gov > Filter /soft/cobalt/scripts/clusterbank-account failed > > > So, I wonder if you can change me to the project MM-MEDE which I am member > (and also PI). On Jan 23, 2014, at 12:53 PM, Tsien, Victor wrote: > petsc group, > > Can you help? > > Thanks, > > Victor > ________________________________________ > From: Mauri Ponga [mponga at caltech.edu] > Sent: Wednesday, January 22, 2014 5:46 PM > To: support at alcf.anl.gov > Subject: [alcf-support #195845] PETSc compilation > > User info for mponga at caltech.edu > ================================= > Username: ponga > Full Name: Mauricio Ponga > Projects: ATPESC2013 > ('*' denotes INCITE projects) > ================================= > > > Hi, > > I am trying to compile my program in VESTA. In order to compile it I need > PETSc. However, I am using a old version (petsc-3.0.0-p8) which I am trying > to configure and compile in my user account. I used the following options: > > ./configure --prefix=/soft/libraries/petsc/3.3-p2/xl-opt --with-batch=1 > --with-blacs-include=/soft/libraries/alcf/current/xl/SCALAPACK/ > --with-blacs-lib=/soft/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a > --with-blas-lapack-lib="-L/soft/libraries/alcf/current/xl/LAPACK/lib > -llapack -L/soft/libraries/alcf/current/xl/BLAS/lib -lblas" > --with-cc=mpixlc_r --with-cxx=mpixlcxx_r --with-debugging=0 > --with-fc="mpixlf77_r -qnosave" --with-fortran-kernels=1 > --with-is-color-value-type=short > --with-scalapack-include=/soft/libraries/alcf/current/xl/SCALAPACK/ > --with-scalapack-lib=/soft/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a > --with-shared-libraries=0 --with-x=0 -COPTFLAGS=" -O3 -qhot=level=0 > -qsimd=auto -qmaxmem=-1 -qstrict -qstrict_induction" -CXXOPTFLAGS=" -O3 > -qhot=level=0 -qsimd=auto -qmaxmem=-1 -qstrict -qstrict_induction" > -FOPTFLAGS=" -O3 -qhot=level=0 -qsimd=auto -qmaxmem=-1 -qstrict > -qstrict_induction" PETSC_ARCH=arch-bgq-ibm-opt with-mpi-shared=0 > > Configuration finished fine, but at the end of the script appear the > following message > > ================================================================================= > > Since your compute nodes require use of a batch system or mpiexec you > must: > 1) Submit ./conftest to 1 processor of your batch system or system you > are > cross-compiling for; this will generate the file > reconfigure.py > 2) Run ./reconfigure.py (to complete the configure > process). > ================================================================================= > > I tried to run the command ./conftest using jobscript.sh (in > /home/ponga/petsc-3.0.0-p8) but the following message appears: > > ponga is not a member of MM-MEDE > Projects available: ATPESC2013 > For assistance, contact support at alcf.anl.gov > Filter /soft/cobalt/scripts/clusterbank-account failed > > > So, I wonder if you can change me to the project MM-MEDE which I am member > (and also PI). Also I wonder if I am following the right steps to configure > PETSc in my user account. > > Thank you. > > Mauricio Ponga > From dharmareddy84 at gmail.com Thu Jan 23 15:42:50 2014 From: dharmareddy84 at gmail.com (=?utf-8?B?RGhhcm1lbmRhciBSZWRkeQ==?=) Date: Thu, 23 Jan 2014 15:42:50 -0600 Subject: [petsc-users] =?utf-8?q?DMLocalToGlobal_PETScSF_is_BROKEN?= Message-ID: <52e18cd3.6a94b60a.5ef8.0c59@mx.google.com> Hello, How should i fix the issue mentioned below ? Sent from my HTC smartphone on the Now Network from Sprint! ----- Reply message ----- From: "Dharmendar Reddy" To: "Jed Brown" Cc: "Barry Smith" , "PETSc users list" Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN Date: Wed, Jan 22, 2014 5:26 pm Hello, I have attached the test case which demonstrates the problem. The following is the issue: globalX1=1.0 globalX2=2.0 localX1=-1.0 localX2=-2.0 Begin: localX1 to globalX1 Begin: localX2 to globalX2 End: localX1 to globalX1 End: localX2 to globalX2 i get globalX1 = -2 and globalX2 = -1.0 instead of globalX1 = -1 and globalX2 = -2.0 When my code crashed, i was doing this to set the ub and lb vectors for SNES and (now) obviously the code did not progress as the ub and lb were swaped. Should the snes warn for such case where lb < ub is not valid, by user error or otherwise as in this case. On Wed, Jan 22, 2014 at 4:39 PM, Jed Brown wrote: > Barry Smith writes: >> Ok, well the damn code is so convoluted it is hard to see that it >> is even trying to do things right for multiple independent calls. > > How would you change this to make it less convoluted? > > static PetscErrorCode PetscSFReduceEnd_Basic(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) > { > void (*UnpackOp)(PetscInt,const PetscInt*,void*,const void*); > PetscErrorCode ierr; > PetscSFBasicPack link; > PetscInt i,nrootranks; > const PetscInt *rootoffset,*rootloc; > > PetscFunctionBegin; > ierr = PetscSFBasicGetPackInUse(sf,unit,rootdata,PETSC_OWN_POINTER,&link);CHKERRQ(ierr); > /* This implementation could be changed to unpack as receives arrive, at the cost of non-determinism */ > ierr = PetscSFBasicPackWaitall(sf,link);CHKERRQ(ierr); > ierr = PetscSFBasicGetRootInfo(sf,&nrootranks,NULL,&rootoffset,&rootloc);CHKERRQ(ierr); > ierr = PetscSFBasicPackGetUnpackOp(sf,link,op,&UnpackOp);CHKERRQ(ierr); > for (i=0; i PetscMPIInt n = rootoffset[i+1] - rootoffset[i]; > const void *packstart = link->root+rootoffset[i]*link->unitbytes; > > (*UnpackOp)(n,rootloc+rootoffset[i],rootdata,packstart); > } > ierr = PetscSFBasicReclaimPack(sf,&link);CHKERRQ(ierr); > PetscFunctionReturn(0); > } > > >> You?ll have to pry out of Dhamendar his test case that fails. > > That would be useful. -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Thu Jan 23 16:15:15 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 23 Jan 2014 16:15:15 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: Hello, How should i fix the issue mentioned below ? On Thu, Jan 23, 2014 at 12:47 AM, Dharmendar Reddy wrote: > Hello, > I think, i found the cause of the crashes. It is due to _cb > defined in zsnesf.c and a particular usage pattern. > > Here is how it is: > The code has snes object wrapped inside a fortran data type (Solver_t) > > Say i have two solver objects: > type(solver_t) :: solver1 > type(solver_t) :: solver2 > > I first use solver1 to solve an equation where i do not use DM > > In the snes in Solver1 , i set function first and then jacobian. > > Now, ths static struct _cb in zsnsef has: > _cb = {function = 1000, test = 0, destroy = 0, jacobian = 1001, > monitor = 0, mondestroy = 0, gs = 0} > > > Now i call the second solver with DM, where is set the function and > jacobain via DMSetFxn/Jac > > Then i call snessetconvergenceset > > _cb not takes the value : > > _cb = {function = 1000, test = 1002, destroy = 0, jacobian = 1001, > monitor = 0, mondestroy = 0, gs = 0} > > but the snes hdr has num_fortrancallback[0] = 1 > > leading to an error: at line 262 in src/sys/objects/inherit.c > if (PetscUnlikely(cid >= > PETSC_SMALLEST_FORTRAN_CALLBACK+obj->num_fortrancallback[cbtype])) > SETERRQ(obj->comm,PETSC_ERR_ARG_CORRUPT,"Fortran callback not set on > this object"); > > > There is another scenario where my code hangs, i noted it as case (2) > [line 968 in solver.F90] in the comments of the attached test case. > > i have attahced the logs for each of the three cases considered. > > why cannot _cb reside inside the snes object ? > > Thanks > Reddy > > On Wed, Jan 22, 2014 at 8:20 PM, Dharmendar Reddy > wrote: >> Hello, >> I will try to f-blas-pack. later today. >> >> I did some more digging of the code: >> >> When i look at the snes object...I find the follwoing: I can see that >> the ctx and residual and jacobian functions are set right. Where as >> the fortran callbacks in the snes seem to be wrong..even though snes >> says it has one fortran callback..am i reading this right ? >> >> (idb) print (*snes).dm.dmsnes.fortrancallback[1][0] >> $95 = {func = 0x7e9e7e , ctx = 0x2b591f8} >> (idb) print (*snes).dm.dmsnes.fortrancallback[1][1] >> $96 = {func = 0x7e9bb8 , ctx = 0x2b591f8} >> (idb) print (*snes).hdr >> $97 = {classid = 1211230, bops = 0x53bc4d0, comm = -2080374784, type = >> 0, flops = 0, time = 0, mem = 1340, memchild >> ren = 0, id = 67, refct = 1, tag = 1073741734, qlist = 0x0, olist = >> 0x0, class_name = 0x2b592d32b9fc "SNES", descri >> ption = 0x2b592d32ba04 "Nonlinear solver", mansec = 0x2b592d32b9fc >> "SNES", type_name = 0x5416040 "newtonls", parent >> = 0x0, parentid = 0, name = 0x0, prefix = 0x54146b0 "ddm_", tablevel >> = 0, cpp = 0x0, state = 0, int_idmax = 0, int >> star_idmax = 0, intcomposedstate = 0x0, intstarcomposedstate = 0x0, >> intcomposeddata = 0x0, intstarcomposeddata = 0x >> 0, real_idmax = 0, realstar_idmax = 0, realcomposedstate = 0x0, >> realstarcomposedstate = 0x0, realcomposeddata = 0x0 >> , realstarcomposeddata = 0x0, scalar_idmax = 0, scalarstar_idmax = 0, >> scalarcomposedstate = 0x0, scalarstarcomposed >> state = 0x0, scalarcomposeddata = 0x0, scalarstarcomposeddata = 0x0, >> fortran_func_pointers = 0x0, num_fortran_func_ >> pointers = 0, *fortrancallback = {0x54cd5e0, 0x0}, num_fortrancallback >> = {1, 0}, python_context = 0x0, python_destr >> oy = 0x0, noptionhandler = 0, (*optionhandler)(PetscObject, void *) = >> {0x0, 0x0, 0x0, 0x0, 0x0}, (*optiondestroy)(P >> etscObject, void *) = {0x0, 0x0, 0x0, 0x0, 0x0}, *optionctx = {0x0, >> 0x0, 0x0, 0x0, 0x0}, precision = PETSC_PRECISIO >> N_DOUBLE, optionsprinted = PETSC_TRUE} >> (idb) print (*snes).hdr.fortrancallback[0][0] >> $98 = {func = 0x0, ctx = 0x0} >> >> The call which sets the convergence test function is : You can see >> that the cctx object has same address as the context set in >> (*snes).dm.dmsnes.fortrancallback >> >> Breakpoint 1, SOLVERUTILS_M::solve_solver (this=0x2b591f8, >> ierr=-1070882422) at /home1/00924/Reddy135/projects/ut >> gds/src/solver/Solver.F90:348 >> 348 call SNESSetConvergenceTest(this%snes, >> SNESConvergenceTest_snes, this,PETSC_NULL_FUNCTION, ierr); >> CHKERRQ(ierr) >> (idb) c >> Continuing. >> >> Breakpoint 4, snessetconvergencetest_ (snes=0x2b59210, func=0x7ea300 >> , cctx=0x2b591f8, >> destroy=0x0, ierr=0x7fffcd0c04f4) at >> /home1/00924/Reddy135/LocalApps/petsc/src/snes/interface/ftn-custom/zsnesf.c >> :254 >> >> >> The stack trace is.. >> >> (idb) bt >> #0 0x00002b592ca05849 in SNESSolve_NEWTONLS (snes=0x53bba60) at >> /home1/00924/Reddy135/LocalApps/petsc/src/snes/imp >> ls/ls/ls.c:197 >> #1 0x00002b592caaf980 in SNESSolve (snes=0x53bba60, b=0x0, >> x=0x53ddc00) at /home1/00924/Reddy135/LocalApps/petsc/s >> rc/snes/interface/snes.c:3809 >> #2 0x00002b592cae975b in snessolve_ (snes=0x2b59210, b=0xe2f780, >> x=0x2b59258, __ierr=0x7fffcd0c04f4) at /home1/009 >> 24/Reddy135/LocalApps/petsc/src/snes/interface/ftn-custom/zsnesf.c:171 >> #3 0x00000000007ea68f in SOLVERUTILS_M::solve_solver (this=0x2b591f8, >> ierr=0) at /home1/00924/Reddy135/projects/ut >> gds/src/solver/Solver.F90:350 >> #4 0x00000000005b99d9 in FEMLIB_M::solve2_vp (this=0x2b58d60, >> solinit={...}) at /home1/00924/Reddy135/projects/utg >> ds/src/fem/VariationalProblemBoundProcedures.F90:793 >> #5 0x0000000000430277 in UTGDS_M::runsimulation_ddm >> (this=0x7fffcd0c11f0) at /home1/00924/Reddy135/projects/utgds/ >> src/devicesimulator/runDDM.F90:39 >> #6 0x000000000042623e in UTGDS_M::runsimulation_device >> (this=0x7fffcd0c11f0) at /home1/00924/Reddy135/projects/utg >> ds/src/devicesimulator/UTGDSmod.F90:267 >> #7 0x000000000040840f in oneddgfetpoissonschrod () at >> /home1/00924/Reddy135/projects/utgds/test/testDDM/RTDPoisTes >> t.F90:13 >> #8 0x0000000000407e4c in main () in >> /home1/00924/Reddy135/projects/utgds/test/testDDM/PoisTest >> #9 0x000000390881ecdd in __libc_start_main () in /lib64/libc-2.12.so >> >> Thanks >> Reddy >> >> On Wed, Jan 22, 2014 at 5:45 PM, Matthew Knepley wrote: >>> On Wed, Jan 22, 2014 at 5:37 PM, Dharmendar Reddy >>> wrote: >>>> >>>> On Wed, Jan 22, 2014 at 5:33 PM, Matthew Knepley >>>> wrote: >>>> > >>>> > On Wed, Jan 22, 2014 at 4:50 PM, Dharmendar Reddy >>>> > >>>> > wrote: >>>> >> >>>> >> I take back my earlier email... >>>> > >>>> > >>>> > Do you have the threadcomm stuff turned on? >>>> >>>> I do not know what this means. Is related to compile time flags for my >>>> fortran code ? I link to mkl which is threaded. But otherwise, i >>>> guess, the answer is no. >>> >>> >>> The weird business looks like its in pthreads, so could you reconfigure >>> without MKL? >>> >>> $PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py --download-f-blas-lapack >>> --PETSC_ARCH=arch-testing >>> >>> It would not surprise me if this was the problem. >>> >>> Matt >>> >>>> >>>> >>>> > >>>> > Matt >>>> > >>>> >> >>>> >> I see the error irrespective of valgrind options. I did a clean >>>> >> compile to test it few times now. >>>> >> See the attached valgrind.log >>>> >> >>>> >> Now the difference between, ex5f90.F and my code is that i use >>>> >> DMSNESSetFunctionLocal in the case where the code fails. >>>> >> >>>> >> I have also attached the solver.F90 which wraps the calls to snes, Now >>>> >> the solver has to interface (1) for equations which are handled with a >>>> >> DM and (2) for equation with out DM , here i use SNESSetFunction, and >>>> >> this part of the code runs fine with the test case in the code which >>>> >> can be compiled with -DTestSolver and standard petsc makefile >>>> >> >>>> >> The case with DM is linked deeply into my code, i am trying to get to >>>> >> a test case for that. >>>> >> >>>> >> thanks >>>> >> Reddy >>>> >> >>>> >> On Wed, Jan 22, 2014 at 4:30 PM, Barry Smith >>>> >> wrote: >>>> >> > >>>> >> > The thing to use in valgrind is -q --tool=memcheck >>>> >> > >>>> >> > This checks for corrupted and illegally accessed memory, >>>> >> > uninitialized memory etc It shows the exact lines that memory is >>>> >> > used >>>> >> > incorrectly so you can fix your code. >>>> >> > >>>> >> > Barry >>>> >> > >>>> >> > On Jan 22, 2014, at 4:02 PM, Dharmendar Reddy >>>> >> > >>>> >> > wrote: >>>> >> > >>>> >> >> Hello, >>>> >> >> The code works fine if i run with valgrind --leak-check=yes >>>> >> >> exename args >>>> >> >> it fails if i run valgrind exename args >>>> >> >> >>>> >> >> Any suggestions on what to look for my code? >>>> >> >> >>>> >> >> Thanks >>>> >> >> Reddy >>>> >> >> >>>> >> >> On Wed, Jan 22, 2014 at 3:31 PM, Dharmendar Reddy >>>> >> >> wrote: >>>> >> >>> Hello, >>>> >> >>> I tried using the SNESSetConvergenceTest in ex5f90.F using >>>> >> >>> my >>>> >> >>> subroutine. Works as expected. I will try to run my code through >>>> >> >>> valgrind. >>>> >> >>> >>>> >> >>> Thanks >>>> >> >>> Reddy >>>> >> >>> >>>> >> >>> On Wed, Jan 22, 2014 at 2:33 PM, Dharmendar Reddy >>>> >> >>> wrote: >>>> >> >>>> Hello, >>>> >> >>>> I will also try to create a stand alone test case. >>>> >> >>>> >>>> >> >>>> Thanks >>>> >> >>>> Reddy >>>> >> >>>> >>>> >> >>>> On Wed, Jan 22, 2014 at 1:53 PM, Matthew Knepley >>>> >> >>>> >>>> >> >>>> wrote: >>>> >> >>>>> On Wed, Jan 22, 2014 at 1:52 PM, Barry Smith >>>> >> >>>>> wrote: >>>> >> >>>>>> >>>> >> >>>>>> >>>> >> >>>>>> We need more information to track this down. Could you make a >>>> >> >>>>>> simple >>>> >> >>>>>> standalone code that reproduces the problem? Just creates a >>>> >> >>>>>> this, >>>> >> >>>>>> creates a >>>> >> >>>>>> SNES, sets the function, sets the test code and then crashes >>>> >> >>>>>> when >>>> >> >>>>>> runs. >>>> >> >>>>>> >>>> >> >>>>>> But since it is not crashing in the SNESConvergenceTest_snes >>>> >> >>>>>> routine I >>>> >> >>>>>> suspect it may be memory corruption. Have you run your code >>>> >> >>>>>> under >>>> >> >>>>>> valgrind? >>>> >> >>>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >>>> >> >>>>> >>>> >> >>>>> >>>> >> >>>>> I am putting his convergence test into ex5f right now. This can >>>> >> >>>>> be >>>> >> >>>>> valgrinded. I will send an update when it runs. >>>> >> >>>>> >>>> >> >>>>> Matt >>>> >> >>>>> >>>> >> >>>>>> >>>> >> >>>>>> >>>> >> >>>>>> Barry >>>> >> >>>>>> >>>> >> >>>>>> On Jan 20, 2014, at 7:14 PM, Dharmendar Reddy >>>> >> >>>>>> >>>> >> >>>>>> wrote: >>>> >> >>>>>> >>>> >> >>>>>>> Hello, >>>> >> >>>>>>> I am getting a segmentation fault when i use >>>> >> >>>>>>> SNESSetConvergenceTest from Fortran. >>>> >> >>>>>>> >>>> >> >>>>>>> I use the following: >>>> >> >>>>>>> >>>> >> >>>>>>> call SNESSetConvergenceTest(this%snes, >>>> >> >>>>>>> SNESConvergenceTest_snes, >>>> >> >>>>>>> this,PETSC_NULL_FUNCTION, ierr) (Line 1) >>>> >> >>>>>>> >>>> >> >>>>>>> where the soubtoutine is >>>> >> >>>>>>> >>>> >> >>>>>>> subroutine >>>> >> >>>>>>> SNESConvergenceTest_snes(snes,it,xnorm,gnorm,fnorm,reason,this, >>>> >> >>>>>>> ierr) >>>> >> >>>>>>> implicit none >>>> >> >>>>>>> #include "finclude/petsc.h" >>>> >> >>>>>>> ! IO Variables >>>> >> >>>>>>> SNES :: snes >>>> >> >>>>>>> integer :: it >>>> >> >>>>>>> PetscReal :: xnorm >>>> >> >>>>>>> PetscReal :: gnorm >>>> >> >>>>>>> PetscReal :: fnorm >>>> >> >>>>>>> SNESConvergedReason :: reason >>>> >> >>>>>>> type(Solver_t) :: this >>>> >> >>>>>>> PetscErrorCode :: ierr >>>> >> >>>>>>> ! Local Variables >>>> >> >>>>>>> Vec :: X, dX >>>> >> >>>>>>> Vec :: F, W, G >>>> >> >>>>>>> real(WP) :: lambda >>>> >> >>>>>>> print*, 'Calling custom test',it,xnorm,fnorm,gnorm >>>> >> >>>>>>> !call SNESLineSearchGetLambda(this%linesearch, lambda, ierr) >>>> >> >>>>>>> !call SNESLineSearchGetVecs(this%linesearch, X, F, dX, W, G, >>>> >> >>>>>>> ierr) >>>> >> >>>>>>> !call this%SNESConvergenceTest(it, fnorm, lambda, X, dX, >>>> >> >>>>>>> reason, >>>> >> >>>>>>> ierr) >>>> >> >>>>>>> reason = SNES_DIVERGED_FUNCTION_COUNT >>>> >> >>>>>>> end subroutine SNESConvergenceTest_snes >>>> >> >>>>>>> >>>> >> >>>>>>> Code works fine if the call at Line 1 is commented i.e, if i >>>> >> >>>>>>> donot >>>> >> >>>>>>> set the convergencetest >>>> >> >>>>>>> >>>> >> >>>>>>> I have attached the stack trace when the code fails >>>> >> >>>>>>> (traceFail.log) >>>> >> >>>>>>> and stack trace of the code which runs well (tracePass.log). >>>> >> >>>>>>> >>>> >> >>>>>>> >>>> >> >>>>>>> >>>> >> >>>>>>> Thanks >>>> >> >>>>>>> Reddy >>>> >> >>>>>>> >>>> >> >>>>>> >>>> >> >>>>> >>>> >> >>>>> >>>> >> >>>>> >>>> >> >>>>> -- >>>> >> >>>>> What most experimenters take for granted before they begin their >>>> >> >>>>> experiments >>>> >> >>>>> is infinitely more interesting than any results to which their >>>> >> >>>>> experiments >>>> >> >>>>> lead. >>>> >> >>>>> -- Norbert Wiener >>>> >> >>>> >>>> >> >>>> >>>> >> >>>> >>>> >> >>>> -- >>>> >> >>>> ----------------------------------------------------- >>>> >> >>>> Dharmendar Reddy Palle >>>> >> >>>> Graduate Student >>>> >> >>>> Microelectronics Research center, >>>> >> >>>> University of Texas at Austin, >>>> >> >>>> 10100 Burnet Road, Bldg. 160 >>>> >> >>>> MER 2.608F, TX 78758-4445 >>>> >> >>>> e-mail: dharmareddy84 at gmail.com >>>> >> >>>> Phone: +1-512-350-9082 >>>> >> >>>> United States of America. >>>> >> >>>> Homepage: https://webspace.utexas.edu/~dpr342 >>>> >> >>> >>>> >> >>> >>>> >> >>> >>>> >> >>> -- >>>> >> >>> ----------------------------------------------------- >>>> >> >>> Dharmendar Reddy Palle >>>> >> >>> Graduate Student >>>> >> >>> Microelectronics Research center, >>>> >> >>> University of Texas at Austin, >>>> >> >>> 10100 Burnet Road, Bldg. 160 >>>> >> >>> MER 2.608F, TX 78758-4445 >>>> >> >>> e-mail: dharmareddy84 at gmail.com >>>> >> >>> Phone: +1-512-350-9082 >>>> >> >>> United States of America. >>>> >> >>> Homepage: https://webspace.utexas.edu/~dpr342 >>>> >> >> >>>> >> >> >>>> >> >> >>>> >> >> -- >>>> >> >> ----------------------------------------------------- >>>> >> >> Dharmendar Reddy Palle >>>> >> >> Graduate Student >>>> >> >> Microelectronics Research center, >>>> >> >> University of Texas at Austin, >>>> >> >> 10100 Burnet Road, Bldg. 160 >>>> >> >> MER 2.608F, TX 78758-4445 >>>> >> >> e-mail: dharmareddy84 at gmail.com >>>> >> >> Phone: +1-512-350-9082 >>>> >> >> United States of America. >>>> >> >> Homepage: https://webspace.utexas.edu/~dpr342 >>>> >> > >>>> >> >>>> >> >>>> >> >>>> >> -- >>>> >> ----------------------------------------------------- >>>> >> Dharmendar Reddy Palle >>>> >> Graduate Student >>>> >> Microelectronics Research center, >>>> >> University of Texas at Austin, >>>> >> 10100 Burnet Road, Bldg. 160 >>>> >> MER 2.608F, TX 78758-4445 >>>> >> e-mail: dharmareddy84 at gmail.com >>>> >> Phone: +1-512-350-9082 >>>> >> United States of America. >>>> >> Homepage: https://webspace.utexas.edu/~dpr342 >>>> > >>>> > >>>> > >>>> > >>>> > -- >>>> > What most experimenters take for granted before they begin their >>>> > experiments >>>> > is infinitely more interesting than any results to which their >>>> > experiments >>>> > lead. >>>> > -- Norbert Wiener >>>> >>>> >>>> >>>> -- >>>> ----------------------------------------------------- >>>> Dharmendar Reddy Palle >>>> Graduate Student >>>> Microelectronics Research center, >>>> University of Texas at Austin, >>>> 10100 Burnet Road, Bldg. 160 >>>> MER 2.608F, TX 78758-4445 >>>> e-mail: dharmareddy84 at gmail.com >>>> Phone: +1-512-350-9082 >>>> United States of America. >>>> Homepage: https://webspace.utexas.edu/~dpr342 >>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their experiments >>> is infinitely more interesting than any results to which their experiments >>> lead. >>> -- Norbert Wiener >> >> >> >> -- >> ----------------------------------------------------- >> Dharmendar Reddy Palle >> Graduate Student >> Microelectronics Research center, >> University of Texas at Austin, >> 10100 Burnet Road, Bldg. 160 >> MER 2.608F, TX 78758-4445 >> e-mail: dharmareddy84 at gmail.com >> Phone: +1-512-350-9082 >> United States of America. >> Homepage: https://webspace.utexas.edu/~dpr342 > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle -- ----------------------------------------------------- Dharmendar Reddy Palle Graduate Student Microelectronics Research center, University of Texas at Austin, 10100 Burnet Road, Bldg. 160 MER 2.608F, TX 78758-4445 e-mail: dharmareddy84 at gmail.com Phone: +1-512-350-9082 United States of America. Homepage: https://webspace.utexas.edu/~dpr342 From jed at jedbrown.org Thu Jan 23 16:18:29 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 23 Jan 2014 15:18:29 -0700 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> Message-ID: <87sise4a16.fsf@jedbrown.org> Dharmendar Reddy writes: > Hello, > How should i fix the issue mentioned below ? I will fix it, but I have a couple hours of work to do first. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Thu Jan 23 16:20:20 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 23 Jan 2014 16:20:20 -0600 Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN In-Reply-To: <52e18cd3.6a94b60a.5ef8.0c59@mx.google.com> References: <52e18cd3.6a94b60a.5ef8.0c59@mx.google.com> Message-ID: <60CDA16B-FC4E-49EE-A308-1D3533ACFCB1@mcs.anl.gov> We are waiting for Jed to confirm a problem and fix it (or yell at me for unfairly blaming him). Now you should simply always immediately follow the Begin function call with the corresponding End function call. Barry On Jan 23, 2014, at 3:42 PM, Dharmendar Reddy wrote: > Hello, > How should i fix the issue mentioned below ? > > Sent from my HTC smartphone on the Now Network from Sprint! > > ----- Reply message ----- > From: "Dharmendar Reddy" > To: "Jed Brown" > Cc: "Barry Smith" , "PETSc users list" > Subject: [petsc-users] DMLocalToGlobal PETScSF is BROKEN > Date: Wed, Jan 22, 2014 5:26 pm > > > Hello, > I have attached the test case which demonstrates the problem. > > The following is the issue: > globalX1=1.0 > globalX2=2.0 > > localX1=-1.0 > localX2=-2.0 > > > Begin: localX1 to globalX1 > Begin: localX2 to globalX2 > > End: localX1 to globalX1 > End: localX2 to globalX2 > > > i get globalX1 = -2 and globalX2 = -1.0 instead of globalX1 = -1 and > globalX2 = -2.0 > > > When my code crashed, i was doing this to set the ub and lb vectors > for SNES and (now) obviously the code did not progress as the ub and > lb were swaped. Should the snes warn for such case where lb < ub is > not valid, by user error or otherwise as in this case. > > On Wed, Jan 22, 2014 at 4:39 PM, Jed Brown wrote: > > Barry Smith writes: > >> Ok, well the damn code is so convoluted it is hard to see that it > >> is even trying to do things right for multiple independent calls. > > > > How would you change this to make it less convoluted? > > > > static PetscErrorCode PetscSFReduceEnd_Basic(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) > > { > > void (*UnpackOp)(PetscInt,const PetscInt*,void*,const void*); > > PetscErrorCode ierr; > > PetscSFBasicPack link; > > PetscInt i,nrootranks; > > const PetscInt *rootoffset,*rootloc; > > > > PetscFunctionBegin; > > ierr = PetscSFBasicGetPackInUse(sf,unit,rootdata,PETSC_OWN_POINTER,&link);CHKERRQ(ierr); > > /* This implementation could be changed to unpack as receives arrive, at the cost of non-determinism */ > > ierr = PetscSFBasicPackWaitall(sf,link);CHKERRQ(ierr); > > ierr = PetscSFBasicGetRootInfo(sf,&nrootranks,NULL,&rootoffset,&rootloc);CHKERRQ(ierr); > > ierr = PetscSFBasicPackGetUnpackOp(sf,link,op,&UnpackOp);CHKERRQ(ierr); > > for (i=0; i > PetscMPIInt n = rootoffset[i+1] - rootoffset[i]; > > const void *packstart = link->root+rootoffset[i]*link->unitbytes; > > > > (*UnpackOp)(n,rootloc+rootoffset[i],rootdata,packstart); > > } > > ierr = PetscSFBasicReclaimPack(sf,&link);CHKERRQ(ierr); > > PetscFunctionReturn(0); > > } > > > > > >> You?ll have to pry out of Dhamendar his test case that fails. > > > > That would be useful. > > > > -- > ----------------------------------------------------- > Dharmendar Reddy Palle > Graduate Student > Microelectronics Research center, > University of Texas at Austin, > 10100 Burnet Road, Bldg. 160 > MER 2.608F, TX 78758-4445 > e-mail: dharmareddy84 at gmail.com > Phone: +1-512-350-9082 > United States of America. > Homepage: https://webspace.utexas.edu/~dpr342 From friedmud at gmail.com Thu Jan 23 19:32:59 2014 From: friedmud at gmail.com (Derek Gaston) Date: Thu, 23 Jan 2014 18:32:59 -0700 Subject: [petsc-users] Incrementing individual entries in vectors Message-ID: I have a funky algorithm I'm working on... and in it I need to increment individual entries in vectors in parallel and then finalize the vector, summing to get the final value. So, something like this: If I have a vector "v" with 6 values in it (all starting at 0) spread across two processors (so that the first 3 entries are on processor 0 and the last three on processor 1). On processor 0 I need to be able to do: v[1]++; v[2]++; v[1]++; Then on processor 1 I'd like to do: v[0]++; v[1]++' v[5]++; v[1]++; Then, after finalizing the vector I'd like to end up with a vector that has these values on processor 0: v[0] -> 0 v[1] -> 4 v[2] -> 1 and on processor 1: v[3] -> 0 v[4] -> 0 v[5] -> 1 Is there anything in PETSc that would help here?? I realize that I can roll my own solution using arrays and MPI for this... but it would be handy if I could do this with a PETSc Vec because the next step is to use VecPointwiseDivide() to divide another vector by this funky one pointwise. Both of these vectors will have the same parallel distribution. Also, note that these vectors might be really large (like 300 million to 1 billion entries) so it would be really handy to have the automatic parallelization of Vec... Thanks for any help... Derek -------------- next part -------------- An HTML attachment was scrubbed... URL: From friedmud at gmail.com Thu Jan 23 19:39:40 2014 From: friedmud at gmail.com (Derek Gaston) Date: Thu, 23 Jan 2014 18:39:40 -0700 Subject: [petsc-users] Incrementing individual entries in vectors In-Reply-To: References: Message-ID: Of course I'm on a plane right now and in the middle of this algorithm and didn't think about the obvious use of VecSetValue() with with ADD_VALUES and a 1... duh. I was actually just looking for a VecIncrementValue() or some such. Please ignore unless you see an even more efficient way to do this... Derek On Thu, Jan 23, 2014 at 6:32 PM, Derek Gaston wrote: > I have a funky algorithm I'm working on... and in it I need to increment > individual entries in vectors in parallel and then finalize the vector, > summing to get the final value. So, something like this: > > If I have a vector "v" with 6 values in it (all starting at 0) spread > across two processors (so that the first 3 entries are on processor 0 and > the last three on processor 1). > > On processor 0 I need to be able to do: > > v[1]++; > v[2]++; > v[1]++; > > Then on processor 1 I'd like to do: > > v[0]++; > v[1]++' > v[5]++; > v[1]++; > > Then, after finalizing the vector I'd like to end up with a vector that > has these values on processor 0: > > v[0] -> 0 > v[1] -> 4 > v[2] -> 1 > > and on processor 1: > > v[3] -> 0 > v[4] -> 0 > v[5] -> 1 > > Is there anything in PETSc that would help here?? I realize that I can > roll my own solution using arrays and MPI for this... but it would be handy > if I could do this with a PETSc Vec because the next step is to use > VecPointwiseDivide() to divide another vector by this funky one pointwise. > Both of these vectors will have the same parallel distribution. Also, > note that these vectors might be really large (like 300 million to 1 > billion entries) so it would be really handy to have the automatic > parallelization of Vec... > > Thanks for any help... > > Derek > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dharmareddy84 at gmail.com Thu Jan 23 23:05:21 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Thu, 23 Jan 2014 23:05:21 -0600 Subject: [petsc-users] PLEX depth stratum bug ? Message-ID: Hello, I am seeing inconsistent results using get stratum call. For a 2d mesh call DMPlexGetDepthStratum(dmMesh,2,globalidStart,globalidEnd,ierr) prints: globalIdStart = 0 and globalIdEnd = 0 where as call DMPlexGetHeightStratum(dmMesh,0,globalidStart,globalidEnd,ierr) prints globalIdStart = 0 and globalIdEnd = 4 For a mesh with 4 cells. I have attached the test case. I am on petsc version v3.4.3-2568-gb45093d -------------- next part -------------- A non-text attachment was scrubbed... Name: testDMDepthStrata.F90 Type: text/x-fortran Size: 5857 bytes Desc: not available URL: From torquil at gmail.com Fri Jan 24 13:28:02 2014 From: torquil at gmail.com (=?UTF-8?Q?Torquil_Macdonald_S=C3=B8rensen?=) Date: Fri, 24 Jan 2014 20:28:02 +0100 Subject: [petsc-users] Restriction matrix not involved in system matrix coarsening? Message-ID: Hi! I'm experimenting with the PCMG preconditioner with two levels. I have created a system matrix A, an interpolation matrix P and a restriction matrix R which differs from P^T. In addition, I have included PCMGSetGalerkin(pc, PETSC_TRUE). When I extract the system matrix A, interpolation matrix P, restriction matrix R and coarse system matrix A_c from the KSP and PC structures, and test them in Matlab, I get A_c == P^T*A*P and A_c != R*A*P My question is: Why is A_c equal to P^T*A*P when I have set an R which differs from P^T? Here is how I extract the matrices from the KSP and PC structures (variable names ksp and pc, respectively): * To get A: Mat A; KSPGetOperators(ksp, &A, 0, 0); * To get A_c: KSP ksp_c; PCMGGetCoarseSolve(pc, &ksp_c) Mat A_c; KSPGetOperators(ksp_c, &A_c, 0, 0); * To get P: Mat P; PCMGGetInterpolation(pc, 1, &P); * To get R: Mat R; PCMGGetRestriction(pc, 1, &R); Then I output each of these to Matlab format, and check the different products P^T*A*P and R*A*P there to find out which one coincides with A_c. Petsc version is 3.4.3. Best regards Torquil S?rensen -------------- next part -------------- An HTML attachment was scrubbed... URL: From Shuangshuang.Jin at pnnl.gov Fri Jan 24 13:46:35 2014 From: Shuangshuang.Jin at pnnl.gov (Jin, Shuangshuang) Date: Fri, 24 Jan 2014 19:46:35 +0000 Subject: [petsc-users] Compilation error Message-ID: <71FF54182841B443932BB8F835FD98530844DB@EX10MBOX02.pnnl.gov> Hello, I successfully installed Petsc-dev on my cluster with the following configuration: ./configure --with-scalar-type=complex --with-clanguage=C++ --download-f-blas-lapack PETSC_ARCH=arch-complex --with-fortran-kernels=generic --download-superlu_dist --download-mumps --download-scalapack --download-parmetis --download-metis The PETSc libraries were built correctly, and test examples were ran to verfy correct installation. However, when I got to run the example in /Petsc-dev/src/ts/examples/tutorials/ex17.c, I got compilation an error as below: [d3m956 at philo tutorials]$ make ex17 mpicxx -o ex17.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/arch-complex/include -I/share/apps/openmpi/1.6.5/gcc/4.6.2/include -D__INSDIR__=src/ts/examples/tutorials/ ex17.c /pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include/petscsnes.h(585): error: invalid argument to attribute "deprecated" PETSC_DEPRECATED("Use SNESGetLineSearch()") PETSC_STATIC_INLINE PetscErrorCode SNESGetSNESLineSearch(SNES snes,SNESLineSearch *ls) {return SNESGetLineSearch(snes,ls);} ^ /pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include/petscsnes.h(586): error: invalid argument to attribute "deprecated" PETSC_DEPRECATED("Use SNESSetLineSearch()") PETSC_STATIC_INLINE PetscErrorCode SNESSetSNESLineSearch(SNES snes,SNESLineSearch ls) {return SNESSetLineSearch(snes,ls);} ^ compilation aborted for ex17.c (code 2) make: *** [ex17.o] Error 2 Can anyone tell me how to fix it? Thanks, Shuangshuang -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Fri Jan 24 13:52:21 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Fri, 24 Jan 2014 13:52:21 -0600 Subject: [petsc-users] Compilation error In-Reply-To: <71FF54182841B443932BB8F835FD98530844DB@EX10MBOX02.pnnl.gov> References: <71FF54182841B443932BB8F835FD98530844DB@EX10MBOX02.pnnl.gov> Message-ID: There shouldn't be anything like '-D__INSDIR__=src/ts/examples/tutorials/' in the compile command with latest petsc-dev 6.06.13 suggests its more than 6months old. Perhaps you can update to latest petsc-dev - and see if the problem persists? Satish On Fri, 24 Jan 2014, Jin, Shuangshuang wrote: > Hello, I successfully installed Petsc-dev on my cluster with the following configuration: > > ./configure --with-scalar-type=complex --with-clanguage=C++ --download-f-blas-lapack PETSC_ARCH=arch-complex --with-fortran-kernels=generic --download-superlu_dist --download-mumps --download-scalapack --download-parmetis --download-metis > > The PETSc libraries were built correctly, and test examples were ran to verfy correct installation. > > However, when I got to run the example in /Petsc-dev/src/ts/examples/tutorials/ex17.c, I got compilation an error as below: > > [d3m956 at philo tutorials]$ make ex17 > mpicxx -o ex17.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/arch-complex/include -I/share/apps/openmpi/1.6.5/gcc/4.6.2/include -D__INSDIR__=src/ts/examples/tutorials/ ex17.c > /pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include/petscsnes.h(585): error: invalid argument to attribute "deprecated" > PETSC_DEPRECATED("Use SNESGetLineSearch()") PETSC_STATIC_INLINE PetscErrorCode SNESGetSNESLineSearch(SNES snes,SNESLineSearch *ls) {return SNESGetLineSearch(snes,ls);} > ^ > > /pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include/petscsnes.h(586): error: invalid argument to attribute "deprecated" > PETSC_DEPRECATED("Use SNESSetLineSearch()") PETSC_STATIC_INLINE PetscErrorCode SNESSetSNESLineSearch(SNES snes,SNESLineSearch ls) {return SNESSetLineSearch(snes,ls);} > ^ > > compilation aborted for ex17.c (code 2) > make: *** [ex17.o] Error 2 > > Can anyone tell me how to fix it? > > Thanks, > Shuangshuang > > > > From jed at jedbrown.org Fri Jan 24 13:54:49 2014 From: jed at jedbrown.org (Jed Brown) Date: Fri, 24 Jan 2014 12:54:49 -0700 Subject: [petsc-users] Compilation error In-Reply-To: <71FF54182841B443932BB8F835FD98530844DB@EX10MBOX02.pnnl.gov> References: <71FF54182841B443932BB8F835FD98530844DB@EX10MBOX02.pnnl.gov> Message-ID: <87lhy517g6.fsf@jedbrown.org> "Jin, Shuangshuang" writes: > Hello, I successfully installed Petsc-dev on my cluster with the following configuration: > > ./configure --with-scalar-type=complex --with-clanguage=C++ --download-f-blas-lapack PETSC_ARCH=arch-complex --with-fortran-kernels=generic --download-superlu_dist --download-mumps --download-scalapack --download-parmetis --download-metis > > The PETSc libraries were built correctly, and test examples were ran to verfy correct installation. > > However, when I got to run the example in /Petsc-dev/src/ts/examples/tutorials/ex17.c, I got compilation an error as below: > > [d3m956 at philo tutorials]$ make ex17 > mpicxx -o ex17.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/arch-complex/include -I/share/apps/openmpi/1.6.5/gcc/4.6.2/include -D__INSDIR__=src/ts/examples/tutorials/ ex17.c > /pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include/petscsnes.h(585): error: invalid argument to attribute "deprecated" > PETSC_DEPRECATED("Use SNESGetLineSearch()") PETSC_STATIC_INLINE PetscErrorCode SNESGetSNESLineSearch(SNES snes,SNESLineSearch *ls) {return SNESGetLineSearch(snes,ls);} > ^ You must be using a very old "petsc-dev". Likely scenario here is that you have changed environments from when you configured, and now this older version of gcc (the Intel compiler changes its dialect based on which gcc it finds in path) has a dialect that doesn't support arguments to attribute deprecated. This was so common that I unconditionally turned off use of the argument to attribute deprecated. (Yes, this is worse for users that have a stable environment or don't use Intel compilers, but Intel's indirect environment-dependence causes the unacceptable breakage above so we had to work around it somehow.) -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From Shuangshuang.Jin at pnnl.gov Fri Jan 24 13:59:09 2014 From: Shuangshuang.Jin at pnnl.gov (Jin, Shuangshuang) Date: Fri, 24 Jan 2014 19:59:09 +0000 Subject: [petsc-users] Compilation error In-Reply-To: <87lhy517g6.fsf@jedbrown.org> References: <71FF54182841B443932BB8F835FD98530844DB@EX10MBOX02.pnnl.gov> <87lhy517g6.fsf@jedbrown.org> Message-ID: <71FF54182841B443932BB8F835FD9853084510@EX10MBOX02.pnnl.gov> Thanks, your comment helps. After loading a newer version of gcc/4.6.2, the code got compiled successfully. Thanks, Shuangshuang -----Original Message----- From: Jed Brown [mailto:jed at jedbrown.org] Sent: Friday, January 24, 2014 11:55 AM To: Jin, Shuangshuang; petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Compilation error "Jin, Shuangshuang" writes: > Hello, I successfully installed Petsc-dev on my cluster with the following configuration: > > ./configure --with-scalar-type=complex --with-clanguage=C++ > --download-f-blas-lapack PETSC_ARCH=arch-complex > --with-fortran-kernels=generic --download-superlu_dist > --download-mumps --download-scalapack --download-parmetis > --download-metis > > The PETSc libraries were built correctly, and test examples were ran to verfy correct installation. > > However, when I got to run the example in /Petsc-dev/src/ts/examples/tutorials/ex17.c, I got compilation an error as below: > > [d3m956 at philo tutorials]$ make ex17 > mpicxx -o ex17.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include -I/pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/arch-complex/include -I/share/apps/openmpi/1.6.5/gcc/4.6.2/include -D__INSDIR__=src/ts/examples/tutorials/ ex17.c > /pic/projects/ds/Powertech_Labs/petsc-dev.6.06.13/include/petscsnes.h(585): error: invalid argument to attribute "deprecated" > PETSC_DEPRECATED("Use SNESGetLineSearch()") PETSC_STATIC_INLINE PetscErrorCode SNESGetSNESLineSearch(SNES snes,SNESLineSearch *ls) {return SNESGetLineSearch(snes,ls);} > ^ You must be using a very old "petsc-dev". Likely scenario here is that you have changed environments from when you configured, and now this older version of gcc (the Intel compiler changes its dialect based on which gcc it finds in path) has a dialect that doesn't support arguments to attribute deprecated. This was so common that I unconditionally turned off use of the argument to attribute deprecated. (Yes, this is worse for users that have a stable environment or don't use Intel compilers, but Intel's indirect environment-dependence causes the unacceptable breakage above so we had to work around it somehow.) From lb2653 at columbia.edu Fri Jan 24 17:10:40 2014 From: lb2653 at columbia.edu (Luc Berger-Vergiat) Date: Fri, 24 Jan 2014 18:10:40 -0500 Subject: [petsc-users] Setting up a PETSc section for field-split Message-ID: <52E2F2F0.1@columbia.edu> Hi all, I want to use PETSc as a solver for an FEM problem: modelization of shear bands using a 4 fields mixed formulation. So far I am just trying to set up a two fields in a Petsc section, assign dof too each field and then set up the section to pass it to a DM. I am taking this approach because in general I want for fieldsplit to work purely on the algebraic level without knowledge of boundary conditions or geometry. As of now I have issues when I try to assign a point and its associated degree of freedom to a field using: PetscSectionSetFieldDof. Is this the correct way to associate a dof/point to a field? I attached an example code and its makefile. -- Best, Luc -------------- next part -------------- A non-text attachment was scrubbed... Name: DMshell_ex1.c Type: text/x-csrc Size: 2070 bytes Desc: not available URL: -------------- next part -------------- CFLAGS = FFLAGS = CPPFLAGS = FPPFLAGS = LOCDIR = /home/luc/research/simulations/Petsc_DM/ EXAMPLESC = DMshell_ex1.c MANSEC = DM SUBMANSEC = DMDA include ${PETSC_DIR}/conf/variables include ${PETSC_DIR}/conf/rules ex1: DMshell_ex1.o chkopts -${CLINKER} -o ex1 DMshell_ex1.o ${PETSC_DM_LIB} ${RM} -f DMshell_ex1.o From knepley at gmail.com Sat Jan 25 09:31:25 2014 From: knepley at gmail.com (Matthew Knepley) Date: Sat, 25 Jan 2014 09:31:25 -0600 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: <52E2F2F0.1@columbia.edu> References: <52E2F2F0.1@columbia.edu> Message-ID: On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat wrote: > Hi all, > I want to use PETSc as a solver for an FEM problem: modelization of shear > bands using a 4 fields mixed formulation. > > So far I am just trying to set up a two fields in a Petsc section, assign > dof too each field and then set up the section to pass it to a DM. I am > taking this approach because in general I want for fieldsplit to work > purely on the algebraic level without knowledge of boundary conditions or > geometry. > > As of now I have issues when I try to assign a point and its associated > degree of freedom to a field using: PetscSectionSetFieldDof. > Is this the correct way to associate a dof/point to a field? > You have to set the number of fields before the chart. I am updating the docs. Thanks, Matt > I attached an example code and its makefile. > > -- > Best, > Luc > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From mary.sweat78 at yahoo.it Sat Jan 25 18:12:45 2014 From: mary.sweat78 at yahoo.it (mary sweat) Date: Sun, 26 Jan 2014 00:12:45 +0000 (GMT) Subject: [petsc-users] KSP: domain decomposition and distribution In-Reply-To: References: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> <8738kzg38o.fsf@jedbrown.org> <1389180381.38473.YahooMailNeo@web171403.mail.ir2.yahoo.com> <1389184675.79773.YahooMailNeo@web171401.mail.ir2.yahoo.com> Message-ID: <1390695165.86190.YahooMailNeo@web171402.mail.ir2.yahoo.com> Resuming: I have a parabolic differential equation, through the finite difference scheme I obtain a linear system of equations with laplace matrix as coefficient matrix, i.e. the coefficient matrix is sparse, huge and structured.? Then I solve this system with GMRES+Jacob. I don't care about the number of processes and the size of the portions of the matrix assigned to the processes; of course the matrix is partitioned in blocks assigned to the processes the problem is that I need to know, just theoretically, how is the matrix splitted between processes? Moreover, how does it happen on GPUs?? Essentially in which way the domain is splitted between processes? when do they communicate to synchronize/share/exchange partial results? I nees to know also how does it all happen on a GPU. thank you Il Mercoled? 8 Gennaio 2014 13:46, Dave May ha scritto: You asked how the problem was split between processes. In your case, this is defined by?the matrix. ?The default solver in petsc is gmres preconditioned with block Jacobi and ilu(0) applied on each block. The "block" I refer to is the piece of the matrix locally owned by each processor (which is thus defined by the matrix layout/partitioning) On Wednesday, 8 January 2014, mary sweat wrote: I do not explicitily check the size, because I use?PETSC_DECIDE, instead I specify the number of processes. What I really care about is hw does KSPSolve solve the system in a parallel way with multiple processes. > > > >Il Mercoled? 8 Gennaio 2014 12:34, Dave May ha scritto: > >Please check out the manual page for MatSetSizes() >? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatSetSizes.html > >Basically you have two choices: > >1/ Define the global size of the matrix and use PETSC_DECIDE for the local sizes. >In this case, PETSc will define the local row size in a manner such that there are approximately the same number of rows on each process. > >2/ Define the local sizes yourself and use PETSC_DETERMINE for the global size. >Then you have full control over the parallel layout. > >The following functions described by these pages > >? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetSize.html >? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetLocalSize.html >? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRanges.html >? http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatGetOwnershipRangesColumn.html > >might also be useful for you in double checking what the matrix decomposition looks like > > > > > >Cheers, > >? Dave > > > > > > >On 8 January 2014 12:26, mary sweat wrote: > >My target is the following. I got a huge linear system with a sparse huge matrix, nothing to deal with PDE. How is the system splitted between processes? is there in this suggested book the answer? >>Thanks again >> >> >> >>Il Marted? 7 Gennaio 2014 17:34, Jed Brown ha scritto: >> >>mary sweat writes: >> >> >>> Hi all,? I need to know how does KSP separate and distribute domain >>> between processes and the way processes share and communicate halfway >>> results. Is there any good documentation about it??? >> >>The communication is in Mat and Vec functions.? You can see it >>summarized in -log_summary.? For the underlying theory, see Barry's >>book. >> >>http://www.mcs.anl.gov/~bsmith/ddbook.html >> >> > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Sun Jan 26 12:01:01 2014 From: jed at jedbrown.org (Jed Brown) Date: Sun, 26 Jan 2014 12:01:01 -0600 Subject: [petsc-users] KSP: domain decomposition and distribution In-Reply-To: <1390695165.86190.YahooMailNeo@web171402.mail.ir2.yahoo.com> References: <1389112089.89129.YahooMailNeo@web171402.mail.ir2.yahoo.com> <8738kzg38o.fsf@jedbrown.org> <1389180381.38473.YahooMailNeo@web171403.mail.ir2.yahoo.com> <1389184675.79773.YahooMailNeo@web171401.mail.ir2.yahoo.com> <1390695165.86190.YahooMailNeo@web171402.mail.ir2.yahoo.com> Message-ID: <87r47uwrky.fsf@jedbrown.org> mary sweat writes: > Resuming: I have a parabolic differential equation, through the finite difference scheme I obtain a linear system of equations with laplace matrix as coefficient matrix, i.e. the coefficient matrix is sparse, huge and structured.? > Then I solve this system with GMRES+Jacob. > I don't care about the number of processes and the size of the portions of the matrix assigned to the processes; of course the matrix is partitioned in blocks assigned to the processes > the problem is that I need to know, just theoretically, how is the matrix splitted between processes? MatGetOwnershipRanges(), MatGetOwnershipRangesColumn() > Moreover, how does it happen on GPUs?? Same, but arrays are mirrored to the GPU and updated lazily. > Essentially in which way the domain is splitted between processes? If you use DM (like many examples), the DM provides the decomposition. Otherwise it was your numbering. There are many ways to do it; see the examples. > when do they communicate to synchronize/share/exchange partial > results? When algorithmically necessary. > I nees to know also how does it all happen on a GPU. Same. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From abarua at iit.edu Mon Jan 27 01:38:33 2014 From: abarua at iit.edu (amlan barua) Date: Mon, 27 Jan 2014 13:08:33 +0530 Subject: [petsc-users] Extracting a particular DOF from DMDA vector Message-ID: Hi, What is the best way of extracting all values corresponding to a particular degree of freedom of a DMDA vector? Amlan -------------- next part -------------- An HTML attachment was scrubbed... URL: From tgross at ilsb.tuwien.ac.at Mon Jan 27 02:42:57 2014 From: tgross at ilsb.tuwien.ac.at (Thomas Gross) Date: Mon, 27 Jan 2014 09:42:57 +0100 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems Message-ID: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> Dear petsc users/developers, I am using petsc in a parallel FEAP framework (http://www.ce.berkeley.edu/projects/feap/) for mechanics oriented problems (mainly linear elasticity or plasticity). In earlier petsc versions (3.2.7) I always used the petsc options: -ksp_type cg -pc_type prometheus (with standard settings) and achieved a great level of performance. After updating to petsc 3.4.3, where the ?Prometheus? preconditioner was replaced by ?GAMG?, I can not reach the same level of performance. My settings are: -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 (settings recommended for FEAP). Is there a set of GAMG settings, which are equivalent to the standard Prometheus settings? Many thanks and best regards, Thomas From torquil at gmail.com Mon Jan 27 05:59:10 2014 From: torquil at gmail.com (=?UTF-8?Q?Torquil_Macdonald_S=C3=B8rensen?=) Date: Mon, 27 Jan 2014 12:59:10 +0100 Subject: [petsc-users] -draw_pause not working for all plot windows? Message-ID: Hi! I'm using todays Petsc git master on Linux and tried: ./prog -mg_coarse_ksp_plot_eigenvalues -draw_pause -1 but the plot window simply appears and dissappears at once. On the other hand, if I do ./prog -mg_levels_1_est_ksp_gmres_krylov_monitor -draw_pause -1 it works as expected, i.e. I can click on the plot to continue. In addition, the option "-draw_pause" does not appear in the list of options when I run ./prog -help It prints a lot of Petsc options, but not -draw_pause.I got the idea of trying -draw_pause from here: http://lists.mcs.anl.gov/pipermail/petsc-users/2013-April/017123.html Best regards Torquil S?rensen -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Jan 27 08:00:37 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 27 Jan 2014 08:00:37 -0600 Subject: [petsc-users] Extracting a particular DOF from DMDA vector In-Reply-To: References: Message-ID: On Mon, Jan 27, 2014 at 1:38 AM, amlan barua wrote: > Hi, > What is the best way of extracting all values corresponding to a > particular degree of freedom of a DMDA vector? > It depends what you want to do with it. YOu can use DMDAVecGetArrayDOF() or VecScatterStride(). Matt > > Amlan > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Mon Jan 27 09:34:58 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 27 Jan 2014 09:34:58 -0600 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> Message-ID: <87y521tp3x.fsf@jedbrown.org> Thomas Gross writes: > Dear petsc users/developers, > > I am using petsc in a parallel FEAP framework (http://www.ce.berkeley.edu/projects/feap/) for mechanics oriented problems (mainly linear elasticity or plasticity). > In earlier petsc versions (3.2.7) I always used the petsc options: > -ksp_type cg -pc_type prometheus (with standard settings) and achieved a great level of performance. > > After updating to petsc 3.4.3, where the ?Prometheus? preconditioner was replaced by ?GAMG?, I can not reach the same level of performance. My settings are: > -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 (settings recommended for FEAP). > > Is there a set of GAMG settings, which are equivalent to the standard Prometheus settings? Please send -log_summary -ksp_monitor -ksp_view output for both cases. Make sure to use the same smoother you used with Prometheus. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Mon Jan 27 09:57:43 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 27 Jan 2014 09:57:43 -0600 Subject: [petsc-users] -draw_pause not working for all plot windows? In-Reply-To: References: Message-ID: <7B9BCD4F-0410-4049-B6D2-050411370B8C@mcs.anl.gov> On Jan 27, 2014, at 5:59 AM, Torquil Macdonald S?rensen wrote: > Hi! > > I'm using todays Petsc git master on Linux and tried: > > ./prog -mg_coarse_ksp_plot_eigenvalues -draw_pause -1 > > but the plot window simply appears and dissappears at once. Are you sure this command actually does anything? By default the coarse solver is an exact solver which cannot compute eigenvalues. > On the other hand, if I do > > ./prog -mg_levels_1_est_ksp_gmres_krylov_monitor -draw_pause -1 > > it works as expected, i.e. I can click on the plot to continue. > > In addition, the option "-draw_pause" does not appear in the list of options when I run > > ./prog -help > > It prints a lot of Petsc options, but not -draw_pause.I got the idea of trying -draw_pause from here: > > http://lists.mcs.anl.gov/pipermail/petsc-users/2013-April/017123.html > > Best regards > Torquil S?rensen > From torquil at gmail.com Mon Jan 27 10:17:18 2014 From: torquil at gmail.com (=?UTF-8?Q?Torquil_Macdonald_S=C3=B8rensen?=) Date: Mon, 27 Jan 2014 17:17:18 +0100 Subject: [petsc-users] -draw_pause not working for all plot windows? In-Reply-To: <7B9BCD4F-0410-4049-B6D2-050411370B8C@mcs.anl.gov> References: <7B9BCD4F-0410-4049-B6D2-050411370B8C@mcs.anl.gov> Message-ID: The window appeared and dissapeared, so I just assumed that something was plotted. But probably not, for the reason you mention. Thanks! Best regards Torquil S?rensen On 27 January 2014 16:57, Barry Smith wrote: > > On Jan 27, 2014, at 5:59 AM, Torquil Macdonald S?rensen > wrote: > > > Hi! > > > > I'm using todays Petsc git master on Linux and tried: > > > > ./prog -mg_coarse_ksp_plot_eigenvalues -draw_pause -1 > > > > but the plot window simply appears and dissappears at once. > > Are you sure this command actually does anything? By default the coarse > solver is an exact solver which cannot compute eigenvalues. > > > > On the other hand, if I do > > > > ./prog -mg_levels_1_est_ksp_gmres_krylov_monitor -draw_pause -1 > > > > it works as expected, i.e. I can click on the plot to continue. > > > > In addition, the option "-draw_pause" does not appear in the list of > options when I run > > > > ./prog -help > > > > It prints a lot of Petsc options, but not -draw_pause.I got the idea of > trying -draw_pause from here: > > > > http://lists.mcs.anl.gov/pipermail/petsc-users/2013-April/017123.html > > > > Best regards > > Torquil S?rensen > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Mon Jan 27 10:23:19 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 27 Jan 2014 10:23:19 -0600 Subject: [petsc-users] -draw_pause not working for all plot windows? In-Reply-To: References: <7B9BCD4F-0410-4049-B6D2-050411370B8C@mcs.anl.gov> Message-ID: <84D13648-2D69-46CF-A92C-318EB5C808FB@mcs.anl.gov> On Jan 27, 2014, at 10:17 AM, Torquil Macdonald S?rensen wrote: > The window appeared and dissapeared, so I just assumed that something was plotted. When the option is handled in KSPSetFromOptions() the window is created. It is then never used and then destroyed when the program ends > But probably not, for the reason you mention. > > Thanks! > > Best regards > Torquil S?rensen > > > > On 27 January 2014 16:57, Barry Smith wrote: > > On Jan 27, 2014, at 5:59 AM, Torquil Macdonald S?rensen wrote: > > > Hi! > > > > I'm using todays Petsc git master on Linux and tried: > > > > ./prog -mg_coarse_ksp_plot_eigenvalues -draw_pause -1 > > > > but the plot window simply appears and dissappears at once. > > Are you sure this command actually does anything? By default the coarse solver is an exact solver which cannot compute eigenvalues. > > > > On the other hand, if I do > > > > ./prog -mg_levels_1_est_ksp_gmres_krylov_monitor -draw_pause -1 > > > > it works as expected, i.e. I can click on the plot to continue. > > > > In addition, the option "-draw_pause" does not appear in the list of options when I run > > > > ./prog -help > > > > It prints a lot of Petsc options, but not -draw_pause.I got the idea of trying -draw_pause from here: > > > > http://lists.mcs.anl.gov/pipermail/petsc-users/2013-April/017123.html > > > > Best regards > > Torquil S?rensen > > > > From tgross at ilsb.tuwien.ac.at Mon Jan 27 10:35:01 2014 From: tgross at ilsb.tuwien.ac.at (Thomas Gross) Date: Mon, 27 Jan 2014 17:35:01 +0100 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <87y521tp3x.fsf@jedbrown.org> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> Message-ID: Please find enclosed the log summary for the runs. I used the following options for Prometheus and GAMG: Prometheus: -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -aggmg_smooths 1 -options_left GAMG: -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left > Make sure to use the same smoother you used with Prometheus. How can I make sure, that the same smoothing is applied in both cases? Many thanks and best regards, Thomas -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: Prometheus_log.txt URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_log.txt URL: -------------- next part -------------- On Jan 27, 2014, at 4:34 PM, Jed Brown wrote: > Thomas Gross writes: > >> Dear petsc users/developers, >> >> I am using petsc in a parallel FEAP framework (http://www.ce.berkeley.edu/projects/feap/) for mechanics oriented problems (mainly linear elasticity or plasticity). >> In earlier petsc versions (3.2.7) I always used the petsc options: >> -ksp_type cg -pc_type prometheus (with standard settings) and achieved a great level of performance. >> >> After updating to petsc 3.4.3, where the ?Prometheus? preconditioner was replaced by ?GAMG?, I can not reach the same level of performance. My settings are: >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 (settings recommended for FEAP). >> >> Is there a set of GAMG settings, which are equivalent to the standard Prometheus settings? > > Please send -log_summary -ksp_monitor -ksp_view output for both cases. > Make sure to use the same smoother you used with Prometheus. From jed at jedbrown.org Mon Jan 27 10:53:36 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 27 Jan 2014 10:53:36 -0600 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> Message-ID: <87d2jdtlgv.fsf@jedbrown.org> Thomas Gross writes: > Please find enclosed the log summary for the runs. > > I used the following options for Prometheus and GAMG: > Prometheus: > -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -aggmg_smooths 1 -options_left > GAMG: > -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left This is a pretty small problem, but switch back to a single smoothing iteration -mg_levels_ksp_max_it 1. An alternative is -mg_levels_ksp_type richardson -mg_levels_pc_type sor. Note that you are calling KSPSolve 3 times with GAMG, but only once with Prometheus. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From knepley at gmail.com Mon Jan 27 11:18:47 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 27 Jan 2014 11:18:47 -0600 Subject: [petsc-users] PLEX depth stratum bug ? In-Reply-To: References: Message-ID: On Thu, Jan 23, 2014 at 11:05 PM, Dharmendar Reddy wrote: > Hello, > I am seeing inconsistent results using get stratum call. For a > 2d mesh > Sorry, I was swamped last week. You had not interpolated your mesh. I have included modified source: Successfully created DM From Cell List Successfully interpolated mesh DM_0x84000000_0 in 2 dimensions: 0-cells: 9 1-cells: 12 2-cells: 4 Labels: depth: 3 strata of sizes (9, 12, 4) stratum size for value 1 is 12 Number of indices in set 12 0 13 1 14 2 15 3 16 4 17 5 18 6 19 7 20 8 21 9 22 10 23 11 24 Node id start= 4 node id end= 12 edge id start= 13 edge id end= 24 element id start= 0 element id end= 3 printing the cell ids based on height stratum element id start= 0 element id end= 3 Matt > call DMPlexGetDepthStratum(dmMesh,2,globalidStart,globalidEnd,ierr) > > prints: globalIdStart = 0 and globalIdEnd = 0 > > > where as > > call DMPlexGetHeightStratum(dmMesh,0,globalidStart,globalidEnd,ierr) > > prints globalIdStart = 0 and globalIdEnd = 4 > > For a mesh with 4 cells. I have attached the test case. I am on petsc > version v3.4.3-2568-gb45093d > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: testDMDepthStrata.F90 Type: application/octet-stream Size: 6052 bytes Desc: not available URL: From tgross at ilsb.tuwien.ac.at Mon Jan 27 11:48:05 2014 From: tgross at ilsb.tuwien.ac.at (Thomas Gross) Date: Mon, 27 Jan 2014 18:48:05 +0100 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <87d2jdtlgv.fsf@jedbrown.org> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> Message-ID: I ran it with: -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_log_max_it.txt and -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_log_Rich.txt (Log files attached) However, the solution time did not decrease and I still needed to call KSPSolve 3 times although I had -mg_levels_ksp_max_it 1. Best Thomas -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_log_max_it.txt URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_log_Rich.txt URL: -------------- next part -------------- On Jan 27, 2014, at 5:53 PM, Jed Brown wrote: > Thomas Gross writes: > >> Please find enclosed the log summary for the runs. >> >> I used the following options for Prometheus and GAMG: >> Prometheus: >> -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -aggmg_smooths 1 -options_left >> GAMG: >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left > > This is a pretty small problem, but switch back to a single smoothing > iteration -mg_levels_ksp_max_it 1. An alternative is > -mg_levels_ksp_type richardson -mg_levels_pc_type sor. > > Note that you are calling KSPSolve 3 times with GAMG, but only once with > Prometheus. From jed at jedbrown.org Mon Jan 27 12:00:39 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 27 Jan 2014 12:00:39 -0600 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> Message-ID: <8761p5tid4.fsf@jedbrown.org> Thomas Gross writes: > I ran it with: > -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_log_max_it.txt > and > -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_log_Rich.txt > (Log files attached) > > However, the solution time did not decrease and I still needed to call KSPSolve 3 times although I had -mg_levels_ksp_max_it 1. Your original Prometheus output had KSPSolve 1 1.0 4.6679e-02 1.0 4.10e+07 1.2 3.0e+02 2.7e+03 1.9e+02 34100 99100 86 34100 99100 87 1631 Now you have Cheby(2)/Jacobi KSPSolve 3 1.0 1.3235e-01 1.0 3.36e+07 1.0 8.5e+02 2.3e+03 1.2e+03 36100 99100 96 36100 99100 96 507 Cheby(1)/Jacobi KSPSolve 3 1.0 1.3466e-01 1.0 3.28e+07 1.0 8.5e+02 2.3e+03 1.2e+03 49100 99100 96 49100 99100 96 486 Richardson/SOR KSPSolve 3 1.0 1.2476e-01 1.0 3.36e+07 1.0 7.0e+02 2.4e+03 1.2e+03 38100 99100 96 38100 99100 96 538 The cost _per solve_ looks fine here, so why do you/FEAP call KSPSolve three times when using GAMG, going to a residual norm of 1e-16 when you were only going to rtol 1e-8 with Prometheus? For example, here is the convergence the With Prometheus: 0 KSP Residual norm 1.444126847260e-01 1 KSP Residual norm 5.357525404213e-03 2 KSP Residual norm 1.471040678379e-03 3 KSP Residual norm 3.704652302293e-04 4 KSP Residual norm 9.809180893460e-05 5 KSP Residual norm 3.175497350277e-05 6 KSP Residual norm 8.859979496890e-06 7 KSP Residual norm 2.071384344082e-06 8 KSP Residual norm 5.035483717523e-07 9 KSP Residual norm 1.516500637412e-07 10 KSP Residual norm 5.134577847338e-08 11 KSP Residual norm 1.270806138401e-08 12 KSP Residual norm 3.074793756862e-09 13 KSP Residual norm 1.048189477307e-09 and here is with GAMG Richardson/SOR: 0 KSP Residual norm 1.407866441446e-01 1 KSP Residual norm 6.331036946837e-03 2 KSP Residual norm 2.744397946950e-04 3 KSP Residual norm 1.419791977305e-05 4 KSP Residual norm 7.670137315396e-07 5 KSP Residual norm 4.636628100571e-08 6 KSP Residual norm 3.374396803942e-09 7 KSP Residual norm 1.936237763969e-10 The latter has reduced the residual more (in preconditioned norm) in half the iterations. Try running with -ksp_norm_type unpreconditioned if you're concerned about the accuracy of the GAMG solve. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From s_g at berkeley.edu Mon Jan 27 12:02:02 2014 From: s_g at berkeley.edu (Sanjay Govindjee) Date: Mon, 27 Jan 2014 10:02:02 -0800 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> Message-ID: <52E69F1A.7060409@berkeley.edu> Thomas, It looks like you are asking FEAP to solve the equations multiples times. Perhaps you have a nonlinear problem with a Newton loop? This is not a fair comparison. Edit your run script to only perform 1 (one) solve "tang,,1" (No Newton loops), then compare. -sg On 1/27/14 9:48 AM, Thomas Gross wrote: > I ran it with: > -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_log_max_it.txt > and > -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_log_Rich.txt > (Log files attached) > > However, the solution time did not decrease and I still needed to call KSPSolve 3 times although I had -mg_levels_ksp_max_it 1. > > Best > Thomas > > > > > On Jan 27, 2014, at 5:53 PM, Jed Brown wrote: > >> Thomas Gross writes: >> >>> Please find enclosed the log summary for the runs. >>> >>> I used the following options for Prometheus and GAMG: >>> Prometheus: >>> -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -aggmg_smooths 1 -options_left >>> GAMG: >>> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left >> This is a pretty small problem, but switch back to a single smoothing >> iteration -mg_levels_ksp_max_it 1. An alternative is >> -mg_levels_ksp_type richardson -mg_levels_pc_type sor. >> >> Note that you are calling KSPSolve 3 times with GAMG, but only once with >> Prometheus. -- ----------------------------------------------- Sanjay Govindjee, PhD, PE Professor of Civil Engineering Vice Chair for Academic Affairs 779 Davis Hall University of California Berkeley, CA 94720-1710 Voice: +1 510 642 6060 FAX: +1 510 643 5264 s_g at berkeley.edu http://www.ce.berkeley.edu/~sanjay ----------------------------------------------- New Books: Engineering Mechanics of Deformable Solids: A Presentation with Exercises http://www.oup.com/us/catalog/general/subject/Physics/MaterialsScience/?view=usa&ci=9780199651641 http://ukcatalogue.oup.com/product/9780199651641.do http://amzn.com/0199651647 Engineering Mechanics 3 (Dynamics) http://www.springer.com/materials/mechanics/book/978-3-642-14018-1 http://amzn.com/3642140181 ----------------------------------------------- -------------- next part -------------- An HTML attachment was scrubbed... URL: From lb2653 at columbia.edu Mon Jan 27 13:35:10 2014 From: lb2653 at columbia.edu (Luc Berger-Vergiat) Date: Mon, 27 Jan 2014 14:35:10 -0500 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: References: <52E2F2F0.1@columbia.edu> Message-ID: <52E6B4EE.9040001@columbia.edu> Thanks Matt, this indeed setting the number of fields earlier solve my issue! I have now made some progress getting my DM setup but I am having troubles setting my splitfield options. I ran my problem with the -ksp_view option to see what is going on and I guess that somehow the section that I define in my DM is not used by the preconditioner to split the fields. Here is the output of PETSc KSP Object: 1 MPI processes type: gmres GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement GMRES: happy breakdown tolerance 1e-30 maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-16, divergence=1e+16 left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 1 MPI processes type: fieldsplit FieldSplit with MULTIPLICATIVE composition: total splits = 4 Solver info for each split is in the following KSP objects: Split number 0 Defined by IS KSP Object: (fieldsplit_Field_0_) 1 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using NONE norm type for convergence test PC Object: (fieldsplit_Field_0_) 1 MPI processes type: ilu ILU: out-of-place factorization 0 levels of fill tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot matrix ordering: natural factor fill ratio given 1, needed 1 Factored matrix follows: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 package used to perform factorization: petsc total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines Split number 1 Defined by IS KSP Object: (fieldsplit_Field_1_) 1 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using NONE norm type for convergence test PC Object: (fieldsplit_Field_1_) 1 MPI processes type: ilu ILU: out-of-place factorization 0 levels of fill tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot matrix ordering: natural factor fill ratio given 1, needed 1 Factored matrix follows: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 package used to perform factorization: petsc total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines Split number 2 Defined by IS KSP Object: (fieldsplit_Field_2_) 1 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using NONE norm type for convergence test PC Object: (fieldsplit_Field_2_) 1 MPI processes type: ilu ILU: out-of-place factorization 0 levels of fill tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot matrix ordering: natural factor fill ratio given 1, needed 1 Factored matrix follows: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 package used to perform factorization: petsc total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines Split number 3 Defined by IS KSP Object: (fieldsplit_Field_3_) 1 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using NONE norm type for convergence test PC Object: (fieldsplit_Field_3_) 1 MPI processes type: ilu ILU: out-of-place factorization 0 levels of fill tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot matrix ordering: natural factor fill ratio given 1, needed 1 Factored matrix follows: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 package used to perform factorization: petsc total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=16, cols=16 total: nonzeros=256, allocated nonzeros=256 total number of mallocs used during MatSetValues calls =0 using I-node routines: found 4 nodes, limit used is 5 I am also attaching part of my code which I use to generate the DM, the KSP and the PC objects. Best, Luc On 01/25/2014 10:31 AM, Matthew Knepley wrote: > On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat > > wrote: > > Hi all, > I want to use PETSc as a solver for an FEM problem: modelization > of shear bands using a 4 fields mixed formulation. > > So far I am just trying to set up a two fields in a Petsc section, > assign dof too each field and then set up the section to pass it > to a DM. I am taking this approach because in general I want for > fieldsplit to work purely on the algebraic level without knowledge > of boundary conditions or geometry. > > As of now I have issues when I try to assign a point and its > associated degree of freedom to a field using: > PetscSectionSetFieldDof. > Is this the correct way to associate a dof/point to a field? > > > You have to set the number of fields before the chart. I am updating > the docs. > > Thanks, > > Matt > > I attached an example code and its makefile. > > -- > Best, > Luc > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: DM_test.f Type: text/x-fortran Size: 2553 bytes Desc: not available URL: From dharmareddy84 at gmail.com Mon Jan 27 13:58:31 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 27 Jan 2014 13:58:31 -0600 Subject: [petsc-users] PLEX depth stratum bug ? In-Reply-To: References: Message-ID: On Mon, Jan 27, 2014 at 11:18 AM, Matthew Knepley wrote: > On Thu, Jan 23, 2014 at 11:05 PM, Dharmendar Reddy > wrote: >> >> Hello, >> I am seeing inconsistent results using get stratum call. For a >> 2d mesh > > > Sorry, I was swamped last week. You had not interpolated your mesh. I have > included modified source: Agreed, But if the mesh is not interpolated, depth = topological dimension (dim) should refer to dim-cells, is not that true ? > > Successfully created DM From Cell List > Successfully interpolated mesh > DM_0x84000000_0 in 2 dimensions: > 0-cells: 9 > 1-cells: 12 > 2-cells: 4 > Labels: > depth: 3 strata of sizes (9, 12, 4) > stratum size for value 1 is 12 > Number of indices in set 12 > 0 13 > 1 14 > 2 15 > 3 16 > 4 17 > 5 18 > 6 19 > 7 20 > 8 21 > 9 22 > 10 23 > 11 24 > Node id start= 4 node id end= 12 > edge id start= 13 edge id end= 24 > element id start= 0 element id end= 3 > printing the cell ids based on height stratum > element id start= 0 element id end= 3 > > > Matt > >> >> call DMPlexGetDepthStratum(dmMesh,2,globalidStart,globalidEnd,ierr) >> >> prints: globalIdStart = 0 and globalIdEnd = 0 >> >> >> where as >> >> call DMPlexGetHeightStratum(dmMesh,0,globalidStart,globalidEnd,ierr) >> >> prints globalIdStart = 0 and globalIdEnd = 4 >> >> For a mesh with 4 cells. I have attached the test case. I am on petsc >> version v3.4.3-2568-gb45093d > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener From knepley at gmail.com Mon Jan 27 14:11:41 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 27 Jan 2014 14:11:41 -0600 Subject: [petsc-users] PLEX depth stratum bug ? In-Reply-To: References: Message-ID: On Mon, Jan 27, 2014 at 1:58 PM, Dharmendar Reddy wrote: > On Mon, Jan 27, 2014 at 11:18 AM, Matthew Knepley > wrote: > > On Thu, Jan 23, 2014 at 11:05 PM, Dharmendar Reddy < > dharmareddy84 at gmail.com> > > wrote: > >> > >> Hello, > >> I am seeing inconsistent results using get stratum call. For a > >> 2d mesh > > > > > > Sorry, I was swamped last week. You had not interpolated your mesh. I > have > > included modified source: > > Agreed, But if the mesh is not interpolated, depth = topological > dimension (dim) should refer to dim-cells, is not that true ? > No, depth is depth in the DAG, not topological dimension. Matt > > > > Successfully created DM From Cell List > > Successfully interpolated mesh > > DM_0x84000000_0 in 2 dimensions: > > 0-cells: 9 > > 1-cells: 12 > > 2-cells: 4 > > Labels: > > depth: 3 strata of sizes (9, 12, 4) > > stratum size for value 1 is 12 > > Number of indices in set 12 > > 0 13 > > 1 14 > > 2 15 > > 3 16 > > 4 17 > > 5 18 > > 6 19 > > 7 20 > > 8 21 > > 9 22 > > 10 23 > > 11 24 > > Node id start= 4 node id end= 12 > > edge id start= 13 edge id end= 24 > > element id start= 0 element id end= 3 > > printing the cell ids based on height stratum > > element id start= 0 element id end= 3 > > > > > > Matt > > > >> > >> call DMPlexGetDepthStratum(dmMesh,2,globalidStart,globalidEnd,ierr) > >> > >> prints: globalIdStart = 0 and globalIdEnd = 0 > >> > >> > >> where as > >> > >> call DMPlexGetHeightStratum(dmMesh,0,globalidStart,globalidEnd,ierr) > >> > >> prints globalIdStart = 0 and globalIdEnd = 4 > >> > >> For a mesh with 4 cells. I have attached the test case. I am on petsc > >> version v3.4.3-2568-gb45093d > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From tgross at ilsb.tuwien.ac.at Mon Jan 27 14:29:49 2014 From: tgross at ilsb.tuwien.ac.at (Thomas Gross) Date: Mon, 27 Jan 2014 21:29:49 +0100 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <8761p5tid4.fsf@jedbrown.org> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> Message-ID: <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> I was using a Newton Loop in Feap with a higher accuracy. This caused FEAP8.4 to call KSPSolve with GAMG 3 times but FEAP8.3 to call KSPSolve with Prometheus only 1 time. I have now used a larger mesh and adapted the FEAP solve file to call KSPSolve only once for GAMG and Prometheus. However, Prometheus is about 3 times faster then GAMG (see attached log files). Prometheus: -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -options_left > Prometheus_Large_Log.txt Gamg: -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_Large_max_it_log.txt -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_Large_Rich_log.txt Best regards, Thomas -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: Prometheus_Large_Log.txt URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_Large_max_it_log.txt URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_Large_Rich_log.txt URL: -------------- next part -------------- On Jan 27, 2014, at 7:00 PM, Jed Brown wrote: > Thomas Gross writes: > >> I ran it with: >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_log_max_it.txt >> and >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_log_Rich.txt >> (Log files attached) >> >> However, the solution time did not decrease and I still needed to call KSPSolve 3 times although I had -mg_levels_ksp_max_it 1. > > Your original Prometheus output had > > KSPSolve 1 1.0 4.6679e-02 1.0 4.10e+07 1.2 3.0e+02 2.7e+03 1.9e+02 34100 99100 86 34100 99100 87 1631 > > Now you have > > Cheby(2)/Jacobi > > KSPSolve 3 1.0 1.3235e-01 1.0 3.36e+07 1.0 8.5e+02 2.3e+03 1.2e+03 36100 99100 96 36100 99100 96 507 > > Cheby(1)/Jacobi > > KSPSolve 3 1.0 1.3466e-01 1.0 3.28e+07 1.0 8.5e+02 2.3e+03 1.2e+03 49100 99100 96 49100 99100 96 486 > > Richardson/SOR > > KSPSolve 3 1.0 1.2476e-01 1.0 3.36e+07 1.0 7.0e+02 2.4e+03 1.2e+03 38100 99100 96 38100 99100 96 538 > > > The cost _per solve_ looks fine here, so why do you/FEAP call KSPSolve > three times when using GAMG, going to a residual norm of 1e-16 when you > were only going to rtol 1e-8 with Prometheus? For example, here is the > convergence the With Prometheus: > > 0 KSP Residual norm 1.444126847260e-01 > 1 KSP Residual norm 5.357525404213e-03 > 2 KSP Residual norm 1.471040678379e-03 > 3 KSP Residual norm 3.704652302293e-04 > 4 KSP Residual norm 9.809180893460e-05 > 5 KSP Residual norm 3.175497350277e-05 > 6 KSP Residual norm 8.859979496890e-06 > 7 KSP Residual norm 2.071384344082e-06 > 8 KSP Residual norm 5.035483717523e-07 > 9 KSP Residual norm 1.516500637412e-07 > 10 KSP Residual norm 5.134577847338e-08 > 11 KSP Residual norm 1.270806138401e-08 > 12 KSP Residual norm 3.074793756862e-09 > 13 KSP Residual norm 1.048189477307e-09 > > and here is with GAMG Richardson/SOR: > > 0 KSP Residual norm 1.407866441446e-01 > 1 KSP Residual norm 6.331036946837e-03 > 2 KSP Residual norm 2.744397946950e-04 > 3 KSP Residual norm 1.419791977305e-05 > 4 KSP Residual norm 7.670137315396e-07 > 5 KSP Residual norm 4.636628100571e-08 > 6 KSP Residual norm 3.374396803942e-09 > 7 KSP Residual norm 1.936237763969e-10 > > The latter has reduced the residual more (in preconditioned norm) in > half the iterations. Try running with -ksp_norm_type unpreconditioned > if you're concerned about the accuracy of the GAMG solve. From dharmareddy84 at gmail.com Mon Jan 27 14:34:28 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Mon, 27 Jan 2014 14:34:28 -0600 Subject: [petsc-users] PLEX depth stratum bug ? In-Reply-To: References: Message-ID: On Mon, Jan 27, 2014 at 2:11 PM, Matthew Knepley wrote: > On Mon, Jan 27, 2014 at 1:58 PM, Dharmendar Reddy > wrote: >> >> On Mon, Jan 27, 2014 at 11:18 AM, Matthew Knepley >> wrote: >> > On Thu, Jan 23, 2014 at 11:05 PM, Dharmendar Reddy >> > >> > wrote: >> >> >> >> Hello, >> >> I am seeing inconsistent results using get stratum call. For >> >> a >> >> 2d mesh >> > >> > >> > Sorry, I was swamped last week. You had not interpolated your mesh. I >> > have >> > included modified source: >> >> Agreed, But if the mesh is not interpolated, depth = topological >> dimension (dim) should refer to dim-cells, is not that true ? > > > No, depth is depth in the DAG, not topological dimension. Ok, I had a misunderstanding then. So, to be safe, I should use depth 0 to access nodes and height 0 to access dim-cells. > > Matt > >> >> > >> > Successfully created DM From Cell List >> > Successfully interpolated mesh >> > DM_0x84000000_0 in 2 dimensions: >> > 0-cells: 9 >> > 1-cells: 12 >> > 2-cells: 4 >> > Labels: >> > depth: 3 strata of sizes (9, 12, 4) >> > stratum size for value 1 is 12 >> > Number of indices in set 12 >> > 0 13 >> > 1 14 >> > 2 15 >> > 3 16 >> > 4 17 >> > 5 18 >> > 6 19 >> > 7 20 >> > 8 21 >> > 9 22 >> > 10 23 >> > 11 24 >> > Node id start= 4 node id end= 12 >> > edge id start= 13 edge id end= 24 >> > element id start= 0 element id end= 3 >> > printing the cell ids based on height stratum >> > element id start= 0 element id end= 3 >> > >> > >> > Matt >> > >> >> >> >> call DMPlexGetDepthStratum(dmMesh,2,globalidStart,globalidEnd,ierr) >> >> >> >> prints: globalIdStart = 0 and globalIdEnd = 0 >> >> >> >> >> >> where as >> >> >> >> call DMPlexGetHeightStratum(dmMesh,0,globalidStart,globalidEnd,ierr) >> >> >> >> prints globalIdStart = 0 and globalIdEnd = 4 >> >> >> >> For a mesh with 4 cells. I have attached the test case. I am on petsc >> >> version v3.4.3-2568-gb45093d >> > >> > >> > >> > >> > -- >> > What most experimenters take for granted before they begin their >> > experiments >> > is infinitely more interesting than any results to which their >> > experiments >> > lead. >> > -- Norbert Wiener > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener From jed at jedbrown.org Mon Jan 27 14:38:08 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 27 Jan 2014 14:38:08 -0600 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> Message-ID: <87iot5nosv.fsf@jedbrown.org> Thomas Gross writes: > I was using a Newton Loop in Feap with a higher accuracy. This caused > FEAP8.4 to call KSPSolve with GAMG 3 times but FEAP8.3 to call > KSPSolve with Prometheus only 1 time. I have now used a larger mesh > and adapted the FEAP solve file to call KSPSolve only once for GAMG > and Prometheus. However, Prometheus is about 3 times faster then GAMG > (see attached log files). At the very least, you're using different compilers and a different MPI implementation (perhaps one is infiniband?). Communication time is very different in these cases. Should fix that before thinking harder about this. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From jed at jedbrown.org Mon Jan 27 14:57:03 2014 From: jed at jedbrown.org (Jed Brown) Date: Mon, 27 Jan 2014 14:57:03 -0600 Subject: [petsc-users] PLEX depth stratum bug ? In-Reply-To: References: Message-ID: <87a9ehnnxc.fsf@jedbrown.org> Dharmendar Reddy writes: > On Mon, Jan 27, 2014 at 2:11 PM, Matthew Knepley wrote: >> No, depth is depth in the DAG, not topological dimension. I still think this is confusing, especially when working with interpolated and non-interpolated meshes. I could be wrong, but I don't think the generic code would be messier written in terms of topological dimension (and co-dimension) and I think it would be vastly easier to explain. Who can remember height vs depth anyway? > Ok, I had a misunderstanding then. So, to be safe, I should use depth > 0 to access nodes and height 0 to access dim-cells. Yes. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From danyang.su at gmail.com Mon Jan 27 16:27:25 2014 From: danyang.su at gmail.com (Danyang Su) Date: Mon, 27 Jan 2014 14:27:25 -0800 Subject: [petsc-users] Question on PETSc solver iteration and convergence Message-ID: <52E6DD4D.603@gmail.com> Hi All, I implement KSP solver in a Newton iteration. The convergence parameters are: rtol 1.0E-8, abstol 1.0E-50, dtol 1.0E5, maxits 1000. Does the following convergence monitoring make sense? I thought the solver should stop before iteration 36, but it stops at iteration 70. 0 KSP preconditioned resid norm 4.208619583781e-002 true resid norm 2.227983625699e-005 ||r(i)||/||b|| 1.000000000000e+000 1 KSP preconditioned resid norm 6.403275610900e-003 true resid norm 2.795175726580e-007 ||r(i)||/||b|| 1.254576422528e-002 2 KSP preconditioned resid norm 7.416300263102e-004 true resid norm 3.382118379502e-010 ||r(i)||/||b|| 1.518017610404e-005 3 KSP preconditioned resid norm 6.144409100696e-005 true resid norm 1.260466100377e-009 ||r(i)||/||b|| 5.657429820568e-005 4 KSP preconditioned resid norm 4.990158094666e-005 true resid norm 3.632496726225e-008 ||r(i)||/||b|| 1.630396509349e-003 5 KSP preconditioned resid norm 2.743769015994e-005 true resid norm 1.101666758939e-009 ||r(i)||/||b|| 4.944680680017e-005 6 KSP preconditioned resid norm 4.269805798759e-006 true resid norm 7.915494521121e-011 ||r(i)||/||b|| 3.552761532813e-006 7 KSP preconditioned resid norm 1.632413041808e-006 true resid norm 1.163794439302e-009 ||r(i)||/||b|| 5.223532282187e-005 8 KSP preconditioned resid norm 8.010590587547e-007 true resid norm 1.246839309256e-011 ||r(i)||/||b|| 5.596267831030e-007 9 KSP preconditioned resid norm 4.794695759395e-007 true resid norm 3.155943984006e-012 ||r(i)||/||b|| 1.416502324166e-007 10 KSP preconditioned resid norm 4.500033799628e-007 true resid norm 4.554787575528e-011 ||r(i)||/||b|| 2.044354151884e-006 ... 36 KSP preconditioned resid norm 2.752424650444e-009 true resid norm 2.990835953592e-016 ||r(i)||/||b|| 1.342395841286e-011 ... 51 KSP preconditioned resid norm 5.761764412500e-010 true resid norm 2.557370618510e-016 ||r(i)||/||b|| 1.147840849911e-011 ... 69 KSP preconditioned resid norm 4.324655127362e-010 true resid norm 1.982933485715e-014 ||r(i)||/||b|| 8.900125938281e-010 70 KSP preconditioned resid norm 3.923752626311e-010 true resid norm 1.065002491928e-015 ||r(i)||/||b|| 4.780118128535e-011 Thanks, Danyang From knepley at gmail.com Mon Jan 27 16:39:34 2014 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 27 Jan 2014 16:39:34 -0600 Subject: [petsc-users] Question on PETSc solver iteration and convergence In-Reply-To: <52E6DD4D.603@gmail.com> References: <52E6DD4D.603@gmail.com> Message-ID: On Mon, Jan 27, 2014 at 4:27 PM, Danyang Su wrote: > Hi All, > > I implement KSP solver in a Newton iteration. The convergence parameters > are: rtol 1.0E-8, abstol 1.0E-50, dtol 1.0E5, maxits 1000. > These tolerances use the preconditioned residual norm. You can sue the true residual norm for some solver types: http://www.mcs.anl.gov/petsc/petsc-dev/docs/manualpages/KSP/KSPSetNormType.html Matt > Does the following convergence monitoring make sense? I thought the solver > should stop before iteration 36, but it stops at iteration 70. > > 0 KSP preconditioned resid norm 4.208619583781e-002 true resid norm > 2.227983625699e-005 ||r(i)||/||b|| 1.000000000000e+000 > 1 KSP preconditioned resid norm 6.403275610900e-003 true resid norm > 2.795175726580e-007 ||r(i)||/||b|| 1.254576422528e-002 > 2 KSP preconditioned resid norm 7.416300263102e-004 true resid norm > 3.382118379502e-010 ||r(i)||/||b|| 1.518017610404e-005 > 3 KSP preconditioned resid norm 6.144409100696e-005 true resid norm > 1.260466100377e-009 ||r(i)||/||b|| 5.657429820568e-005 > 4 KSP preconditioned resid norm 4.990158094666e-005 true resid norm > 3.632496726225e-008 ||r(i)||/||b|| 1.630396509349e-003 > 5 KSP preconditioned resid norm 2.743769015994e-005 true resid norm > 1.101666758939e-009 ||r(i)||/||b|| 4.944680680017e-005 > 6 KSP preconditioned resid norm 4.269805798759e-006 true resid norm > 7.915494521121e-011 ||r(i)||/||b|| 3.552761532813e-006 > 7 KSP preconditioned resid norm 1.632413041808e-006 true resid norm > 1.163794439302e-009 ||r(i)||/||b|| 5.223532282187e-005 > 8 KSP preconditioned resid norm 8.010590587547e-007 true resid norm > 1.246839309256e-011 ||r(i)||/||b|| 5.596267831030e-007 > 9 KSP preconditioned resid norm 4.794695759395e-007 true resid norm > 3.155943984006e-012 ||r(i)||/||b|| 1.416502324166e-007 > 10 KSP preconditioned resid norm 4.500033799628e-007 true resid norm > 4.554787575528e-011 ||r(i)||/||b|| 2.044354151884e-006 > ... > 36 KSP preconditioned resid norm 2.752424650444e-009 true resid norm > 2.990835953592e-016 ||r(i)||/||b|| 1.342395841286e-011 > ... > 51 KSP preconditioned resid norm 5.761764412500e-010 true resid norm > 2.557370618510e-016 ||r(i)||/||b|| 1.147840849911e-011 > ... > 69 KSP preconditioned resid norm 4.324655127362e-010 true resid norm > 1.982933485715e-014 ||r(i)||/||b|| 8.900125938281e-010 > 70 KSP preconditioned resid norm 3.923752626311e-010 true resid norm > 1.065002491928e-015 ||r(i)||/||b|| 4.780118128535e-011 > > Thanks, > > Danyang > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From torquil at gmail.com Mon Jan 27 17:11:57 2014 From: torquil at gmail.com (=?ISO-8859-1?Q?Torquil_Macdonald_S=F8rensen?=) Date: Tue, 28 Jan 2014 00:11:57 +0100 Subject: [petsc-users] Question on PETSc solver iteration and convergence In-Reply-To: <52E6DD4D.603@gmail.com> References: <52E6DD4D.603@gmail.com> Message-ID: <52E6E7BD.3090909@gmail.com> On 27/01/14 23:27, Danyang Su wrote: > Does the following convergence monitoring make sense? I thought the > solver should stop before iteration 36, but it stops at iteration 70. > > 0 KSP preconditioned resid norm 4.208619583781e-002 true resid norm > 2.227983625699e-005 ||r(i)||/||b|| 1.000000000000e+000 > 1 KSP preconditioned resid norm 6.403275610900e-003 true resid norm > 2.795175726580e-007 ||r(i)||/||b|| 1.254576422528e-002 > 2 KSP preconditioned resid norm 7.416300263102e-004 true resid norm > 3.382118379502e-010 ||r(i)||/||b|| 1.518017610404e-005 > 3 KSP preconditioned resid norm 6.144409100696e-005 true resid norm > 1.260466100377e-009 ||r(i)||/||b|| 5.657429820568e-005 > 4 KSP preconditioned resid norm 4.990158094666e-005 true resid norm > 3.632496726225e-008 ||r(i)||/||b|| 1.630396509349e-003 > 5 KSP preconditioned resid norm 2.743769015994e-005 true resid norm > 1.101666758939e-009 ||r(i)||/||b|| 4.944680680017e-005 > 6 KSP preconditioned resid norm 4.269805798759e-006 true resid norm > 7.915494521121e-011 ||r(i)||/||b|| 3.552761532813e-006 > 7 KSP preconditioned resid norm 1.632413041808e-006 true resid norm > 1.163794439302e-009 ||r(i)||/||b|| 5.223532282187e-005 > 8 KSP preconditioned resid norm 8.010590587547e-007 true resid norm > 1.246839309256e-011 ||r(i)||/||b|| 5.596267831030e-007 > 9 KSP preconditioned resid norm 4.794695759395e-007 true resid norm > 3.155943984006e-012 ||r(i)||/||b|| 1.416502324166e-007 > 10 KSP preconditioned resid norm 4.500033799628e-007 true resid norm > 4.554787575528e-011 ||r(i)||/||b|| 2.044354151884e-006 > ... > 36 KSP preconditioned resid norm 2.752424650444e-009 true resid norm > 2.990835953592e-016 ||r(i)||/||b|| 1.342395841286e-011 > ... > 51 KSP preconditioned resid norm 5.761764412500e-010 true resid norm > 2.557370618510e-016 ||r(i)||/||b|| 1.147840849911e-011 > ... > 69 KSP preconditioned resid norm 4.324655127362e-010 true resid norm > 1.982933485715e-014 ||r(i)||/||b|| 8.900125938281e-010 > 70 KSP preconditioned resid norm 3.923752626311e-010 true resid norm > 1.065002491928e-015 ||r(i)||/||b|| 4.780118128535e-011 > > Thanks, > > Danyang If you run with "-ksp_converged_reason" the output will tell you why it converged (rtol or abstol). If you look here: http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/KSP/KSPSetTolerances.html you'll see that rtol represents the "relative decrease in the residual norm". So you should look at the ratio between a value and the correponding value in the same column at the first iteration. In your case, you'll have to get to iteration 70 before that ratio goes below rtol: 3.923752626311e-010 / 4.208619583781e-002 < 1e-8 Best regards Torquil S?rensen From knepley at gmail.com Tue Jan 28 09:25:14 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 28 Jan 2014 09:25:14 -0600 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: <52E6B4EE.9040001@columbia.edu> References: <52E2F2F0.1@columbia.edu> <52E6B4EE.9040001@columbia.edu> Message-ID: On Mon, Jan 27, 2014 at 1:35 PM, Luc Berger-Vergiat wrote: > Thanks Matt, > this indeed setting the number of fields earlier solve my issue! > > I have now made some progress getting my DM setup but I am having troubles > setting my splitfield options. > I ran my problem with the -ksp_view option to see what is going on and I > guess that somehow the section that I define in my DM is not used by the > preconditioner to split the fields. > Here is the output of PETSc > > KSP Object: 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt > Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-08, absolute=1e-16, divergence=1e+16 > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object: 1 MPI processes > type: fieldsplit > FieldSplit with MULTIPLICATIVE composition: total splits = 4 > Solver info for each split is in the following KSP objects: > Split number 0 Defined by IS > There are 4 splits here and they are defined by an IS. Why do you think that is not what you asked for? Thanks, Matt > KSP Object: (fieldsplit_Field_0_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_0_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 1 Defined by IS > KSP Object: (fieldsplit_Field_1_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_1_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 2 Defined by IS > KSP Object: (fieldsplit_Field_2_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_2_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 3 Defined by IS > KSP Object: (fieldsplit_Field_3_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_3_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=16, cols=16 > total: nonzeros=256, allocated nonzeros=256 > total number of mallocs used during MatSetValues calls =0 > using I-node routines: found 4 nodes, limit used is 5 > > I am also attaching part of my code which I use to generate the DM, the > KSP and the PC objects. > > Best, > Luc > > On 01/25/2014 10:31 AM, Matthew Knepley wrote: > > On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat wrote: > >> Hi all, >> I want to use PETSc as a solver for an FEM problem: modelization of shear >> bands using a 4 fields mixed formulation. >> >> So far I am just trying to set up a two fields in a Petsc section, assign >> dof too each field and then set up the section to pass it to a DM. I am >> taking this approach because in general I want for fieldsplit to work >> purely on the algebraic level without knowledge of boundary conditions or >> geometry. >> >> As of now I have issues when I try to assign a point and its associated >> degree of freedom to a field using: PetscSectionSetFieldDof. >> Is this the correct way to associate a dof/point to a field? >> > > You have to set the number of fields before the chart. I am updating the > docs. > > Thanks, > > Matt > > >> I attached an example code and its makefile. >> >> -- >> Best, >> Luc >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From lb2653 at columbia.edu Tue Jan 28 10:11:52 2014 From: lb2653 at columbia.edu (Luc Berger-Vergiat) Date: Tue, 28 Jan 2014 11:11:52 -0500 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: References: <52E2F2F0.1@columbia.edu> <52E6B4EE.9040001@columbia.edu> Message-ID: <52E7D6C8.7030605@columbia.edu> What I don't really understand is why the size of all the sub fields is zero? As you can see all the matrix object in my fieldsplit preconditioner have total:nonzeros=0, allocated nonzeros=0. This seems strange since I issued the following command: //call DMSetDefaultSection(FSDM, FSSection, ierr) with a the following FSSection: PetscSection with 4 fields field 0 with 1 components Process 0: ( 0) dim 0 offset 0 ( 1) dim 1 offset 0 ( 2) dim 0 offset 0 ( 3) dim 0 offset 0 ( 4) dim 1 offset 0 ( 5) dim 0 offset 0 ( 6) dim 0 offset 0 ( 7) dim 0 offset 0 ( 8) dim 0 offset 0 ( 9) dim 0 offset 0 ( 10) dim 0 offset 0 ( 11) dim 0 offset 0 ( 12) dim 0 offset 0 ( 13) dim 0 offset 0 ( 14) dim 0 offset 0 ( 15) dim 0 offset 0 field 1 with 1 components Process 0: ( 0) dim 1 offset 0 ( 1) dim 0 offset 1 ( 2) dim 1 offset 0 ( 3) dim 1 offset 0 ( 4) dim 0 offset 1 ( 5) dim 1 offset 0 ( 6) dim 0 offset 0 ( 7) dim 0 offset 0 ( 8) dim 0 offset 0 ( 9) dim 0 offset 0 ( 10) dim 0 offset 0 ( 11) dim 0 offset 0 ( 12) dim 0 offset 0 ( 13) dim 0 offset 0 ( 14) dim 0 offset 0 ( 15) dim 0 offset 0 field 2 with 1 components Process 0: ( 0) dim 0 offset 1 ( 1) dim 0 offset 1 ( 2) dim 0 offset 1 ( 3) dim 0 offset 1 ( 4) dim 0 offset 1 ( 5) dim 0 offset 1 ( 6) dim 1 offset 0 ( 7) dim 1 offset 0 ( 8) dim 1 offset 0 ( 9) dim 1 offset 0 ( 10) dim 1 offset 0 ( 11) dim 1 offset 0 ( 12) dim 0 offset 0 ( 13) dim 0 offset 0 ( 14) dim 0 offset 0 ( 15) dim 0 offset 0 field 3 with 1 components Process 0: ( 0) dim 0 offset 1 ( 1) dim 0 offset 1 ( 2) dim 0 offset 1 ( 3) dim 0 offset 1 ( 4) dim 0 offset 1 ( 5) dim 0 offset 1 ( 6) dim 0 offset 1 ( 7) dim 0 offset 1 ( 8) dim 0 offset 1 ( 9) dim 0 offset 1 ( 10) dim 0 offset 1 ( 11) dim 0 offset 1 ( 12) dim 1 offset 0 ( 13) dim 1 offset 0 ( 14) dim 1 offset 0 ( 15) dim 1 offset 0 I thought that by using DMSetDefaultSection() I would be done setting the fields and that the fieldsplit would detect that section and use it to construct the splits. Should I use another command to tell the PC to use the DM section? Best, Luc On 01/28/2014 10:25 AM, Matthew Knepley wrote: > On Mon, Jan 27, 2014 at 1:35 PM, Luc Berger-Vergiat > > wrote: > > Thanks Matt, > this indeed setting the number of fields earlier solve my issue! > > I have now made some progress getting my DM setup but I am having > troubles setting my splitfield options. > I ran my problem with the -ksp_view option to see what is going on > and I guess that somehow the section that I define in my DM is not > used by the preconditioner to split the fields. > Here is the output of PETSc > > KSP Object: 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt > Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-08, absolute=1e-16, divergence=1e+16 > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object: 1 MPI processes > type: fieldsplit > FieldSplit with MULTIPLICATIVE composition: total splits = 4 > Solver info for each split is in the following KSP objects: > Split number 0 Defined by IS > > > There are 4 splits here and they are defined by an IS. Why do you > think that is not what you asked for? > > Thanks, > > Matt > > KSP Object: (fieldsplit_Field_0_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_0_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues > calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 1 Defined by IS > KSP Object: (fieldsplit_Field_1_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_1_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues > calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 2 Defined by IS > KSP Object: (fieldsplit_Field_2_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_2_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues > calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 3 Defined by IS > KSP Object: (fieldsplit_Field_3_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_3_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues > calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=16, cols=16 > total: nonzeros=256, allocated nonzeros=256 > total number of mallocs used during MatSetValues calls =0 > using I-node routines: found 4 nodes, limit used is 5 > > I am also attaching part of my code which I use to generate the > DM, the KSP and the PC objects. > > Best, > Luc > > On 01/25/2014 10:31 AM, Matthew Knepley wrote: >> On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat >> > wrote: >> >> Hi all, >> I want to use PETSc as a solver for an FEM problem: >> modelization of shear bands using a 4 fields mixed formulation. >> >> So far I am just trying to set up a two fields in a Petsc >> section, assign dof too each field and then set up the >> section to pass it to a DM. I am taking this approach because >> in general I want for fieldsplit to work purely on the >> algebraic level without knowledge of boundary conditions or >> geometry. >> >> As of now I have issues when I try to assign a point and its >> associated degree of freedom to a field using: >> PetscSectionSetFieldDof. >> Is this the correct way to associate a dof/point to a field? >> >> >> You have to set the number of fields before the chart. I am >> updating the docs. >> >> Thanks, >> >> Matt >> >> I attached an example code and its makefile. >> >> -- >> Best, >> Luc >> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to >> which their experiments lead. >> -- Norbert Wiener > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Tue Jan 28 10:20:43 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 28 Jan 2014 10:20:43 -0600 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: <52E7D6C8.7030605@columbia.edu> References: <52E2F2F0.1@columbia.edu> <52E6B4EE.9040001@columbia.edu> <52E7D6C8.7030605@columbia.edu> Message-ID: On Tue, Jan 28, 2014 at 10:11 AM, Luc Berger-Vergiat wrote: > What I don't really understand is why the size of all the sub fields is > zero? > As you can see all the matrix object in my fieldsplit preconditioner have > total:nonzeros=0, allocated nonzeros=0. > > This seems strange since I issued the following command: > call DMSetDefaultSection(FSDM, FSSection, ierr) > That section looks like you never called PetscSectionSetUp(). Matt > with a the following FSSection: > PetscSection with 4 fields > field 0 with 1 components > Process 0: > ( 0) dim 0 offset 0 > ( 1) dim 1 offset 0 > ( 2) dim 0 offset 0 > ( 3) dim 0 offset 0 > ( 4) dim 1 offset 0 > ( 5) dim 0 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > ( 9) dim 0 offset 0 > ( 10) dim 0 offset 0 > ( 11) dim 0 offset 0 > ( 12) dim 0 offset 0 > ( 13) dim 0 offset 0 > ( 14) dim 0 offset 0 > ( 15) dim 0 offset 0 > field 1 with 1 components > Process 0: > ( 0) dim 1 offset 0 > ( 1) dim 0 offset 1 > ( 2) dim 1 offset 0 > ( 3) dim 1 offset 0 > ( 4) dim 0 offset 1 > ( 5) dim 1 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > ( 9) dim 0 offset 0 > ( 10) dim 0 offset 0 > ( 11) dim 0 offset 0 > ( 12) dim 0 offset 0 > ( 13) dim 0 offset 0 > ( 14) dim 0 offset 0 > ( 15) dim 0 offset 0 > field 2 with 1 components > Process 0: > ( 0) dim 0 offset 1 > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 0 offset 1 > ( 6) dim 1 offset 0 > ( 7) dim 1 offset 0 > ( 8) dim 1 offset 0 > ( 9) dim 1 offset 0 > ( 10) dim 1 offset 0 > ( 11) dim 1 offset 0 > ( 12) dim 0 offset 0 > ( 13) dim 0 offset 0 > ( 14) dim 0 offset 0 > ( 15) dim 0 offset 0 > field 3 with 1 components > Process 0: > ( 0) dim 0 offset 1 > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 0 offset 1 > ( 6) dim 0 offset 1 > ( 7) dim 0 offset 1 > ( 8) dim 0 offset 1 > ( 9) dim 0 offset 1 > ( 10) dim 0 offset 1 > ( 11) dim 0 offset 1 > ( 12) dim 1 offset 0 > ( 13) dim 1 offset 0 > ( 14) dim 1 offset 0 > ( 15) dim 1 offset 0 > > I thought that by using DMSetDefaultSection() I would be done setting the > fields and that the fieldsplit would detect that section and use it to > construct the splits. > > Should I use another command to tell the PC to use the DM section? > > Best, > Luc > > On 01/28/2014 10:25 AM, Matthew Knepley wrote: > > On Mon, Jan 27, 2014 at 1:35 PM, Luc Berger-Vergiat wrote: > >> Thanks Matt, >> this indeed setting the number of fields earlier solve my issue! >> >> I have now made some progress getting my DM setup but I am having >> troubles setting my splitfield options. >> I ran my problem with the -ksp_view option to see what is going on and I >> guess that somehow the section that I define in my DM is not used by the >> preconditioner to split the fields. >> Here is the output of PETSc >> >> KSP Object: 1 MPI processes >> type: gmres >> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt >> Orthogonalization with no iterative refinement >> GMRES: happy breakdown tolerance 1e-30 >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-08, absolute=1e-16, divergence=1e+16 >> left preconditioning >> using PRECONDITIONED norm type for convergence test >> PC Object: 1 MPI processes >> type: fieldsplit >> FieldSplit with MULTIPLICATIVE composition: total splits = 4 >> Solver info for each split is in the following KSP objects: >> Split number 0 Defined by IS >> > > There are 4 splits here and they are defined by an IS. Why do you think > that is not what you asked for? > > Thanks, > > Matt > > >> KSP Object: (fieldsplit_Field_0_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_0_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> Split number 1 Defined by IS >> KSP Object: (fieldsplit_Field_1_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_1_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> Split number 2 Defined by IS >> KSP Object: (fieldsplit_Field_2_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_2_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> Split number 3 Defined by IS >> KSP Object: (fieldsplit_Field_3_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_3_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=16, cols=16 >> total: nonzeros=256, allocated nonzeros=256 >> total number of mallocs used during MatSetValues calls =0 >> using I-node routines: found 4 nodes, limit used is 5 >> >> I am also attaching part of my code which I use to generate the DM, the >> KSP and the PC objects. >> >> Best, >> Luc >> >> On 01/25/2014 10:31 AM, Matthew Knepley wrote: >> >> On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat > > wrote: >> >>> Hi all, >>> I want to use PETSc as a solver for an FEM problem: modelization of >>> shear bands using a 4 fields mixed formulation. >>> >>> So far I am just trying to set up a two fields in a Petsc section, >>> assign dof too each field and then set up the section to pass it to a DM. I >>> am taking this approach because in general I want for fieldsplit to work >>> purely on the algebraic level without knowledge of boundary conditions or >>> geometry. >>> >>> As of now I have issues when I try to assign a point and its associated >>> degree of freedom to a field using: PetscSectionSetFieldDof. >>> Is this the correct way to associate a dof/point to a field? >>> >> >> You have to set the number of fields before the chart. I am updating >> the docs. >> >> Thanks, >> >> Matt >> >> >>> I attached an example code and its makefile. >>> >>> -- >>> Best, >>> Luc >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From yelkhamra at gmail.com Tue Jan 28 10:31:38 2014 From: yelkhamra at gmail.com (Yaakoub El Khamra) Date: Tue, 28 Jan 2014 10:31:38 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E22@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E50@DCPWPEXMBX02.mdanderson.edu> Message-ID: If ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_order 2 -show_initial -dm_plex_print_fem is for serial, any chance we can get the options to run in parallel? Regards Yaakoub El Khamra On Fri, Jan 17, 2014 at 11:29 AM, Matthew Knepley wrote: > On Fri, Jan 17, 2014 at 11:06 AM, Jones,Martin Alexander < > MAJones2 at mdanderson.org> wrote: > >> >> ------------------------------ >> *From:* Matthew Knepley [knepley at gmail.com] >> *Sent:* Friday, January 17, 2014 11:04 AM >> *To:* Jones,Martin Alexander >> *Cc:* petsc-users at mcs.anl.gov >> *Subject:* Re: [petsc-users] Problems running ex12.c >> >> On Fri, Jan 17, 2014 at 11:00 AM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >>> These examples all seem to run excepting the following command, >>> >>> ex12 -run_type test -dim 3 -refinement_limit 0.0125 >>> -variable_coefficient field -interpolate 1 -petscspace_order 2 >>> -show_initial -dm_plex_print_fem >>> >>> I get the following ouput: >>> >>> ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 >>> -variable_coefficient field -interpolate 1 -petscspace_order 2 >>> -show_initial -dm_plex_print_fem >>> Local function: >>> ./ex12: symbol lookup error: >>> /opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so: undefined >>> symbol: omp_get_num_procs >>> >> >> This is a build problem, but it should affect all the runs. Is this >> reproducible? Can you send configure.log? MKL is the worst. If this >> persists, I would just switch to --download-f-blas-lapack. >> > > Thanks. I have some advice on options > > --with-precision=single # I would not use this unless you are doing > something special, like CUDA > --with-clanguage=C++ # I would recommend switching to C, the build is > much faster > --with-mpi-dir=/usr --with-mpi4py=0 > --with-shared-libraries --CFLAGS=-O0 --CXXFLAGS=-O0 --with-fc=0 > --with-etags=1 # This is unnecessary > > --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" > # Here is the problem, see below > --download-metis > --download-fiat=yes --download-generator --download-scientificpython # > Get rid of these, they are obsolete > > Your MKL needs another library for the OpenMP symbols. I would recommend > switching to --download-f2cblaslapack, > or you can try and find that library. > > Thanks, > > Matt > > >> Thanks, >> >> Matt >> >> >>> ------------------------------ >>> *From:* Matthew Knepley [knepley at gmail.com] >>> *Sent:* Thursday, January 16, 2014 6:35 PM >>> *To:* Jones,Martin Alexander >>> *Cc:* petsc-users at mcs.anl.gov >>> *Subject:* Re: [petsc-users] Problems running ex12.c >>> >>> On Thu, Jan 16, 2014 at 5:43 PM, Jones,Martin Alexander < >>> MAJones2 at mdanderson.org> wrote: >>> >>>> Hi, This is the next error message after configuring and building >>>> with the triangle package when trying to run ex12 >>>> >>> >>> This is my fault for bad defaults. I will fix. Try running >>> >>> ./ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet >>> -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 >>> >>> for a representative run. Then you could try 3D >>> >>> ex12 -run_type test -dim 3 -refinement_limit 0.0125 >>> -variable_coefficient field -interpolate 1 -petscspace_order 2 >>> -show_initial -dm_plex_print_fem >>> >>> or a full run >>> >>> ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate >>> -petscspace_order 1 >>> >>> ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate >>> -petscspace_order 2 >>> >>> Let me know if those work. >>> >>> Thanks, >>> >>> Matt >>> >>> >>>> ./ex12 >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point >>>> Exception,probably divide by zero >>>> [0]PETSC ERROR: Try option -start_in_debugger or >>>> -on_error_attach_debugger >>>> [0]PETSC ERROR: or see >>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSCERROR: or try >>>> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory >>>> corruption errors >>>> [0]PETSC ERROR: likely location of problem given in stack below >>>> [0]PETSC ERROR: --------------------- Stack Frames >>>> ------------------------------------ >>>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not >>>> available, >>>> [0]PETSC ERROR: INSTEAD the line number of the start of the >>>> function >>>> [0]PETSC ERROR: is given. >>>> [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 >>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c >>>> [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 >>>> /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c >>>> [0]PETSC ERROR: [0] SNES user function line 2088 >>>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>>> [0]PETSC ERROR: [0] SNESComputeFunction line 2076 >>>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>>> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 >>>> /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c >>>> [0]PETSC ERROR: [0] SNESSolve line 3765 >>>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>>> [0]PETSC ERROR: --------------------- Error Message >>>> ------------------------------------ >>>> [0]PETSC ERROR: Signal received! >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 >>>> GIT Date: 2014-01-15 20:33:42 -0600 >>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by >>>> mjonesa Thu Jan 16 17:41:23 2014 >>>> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >>>> [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 >>>> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >>>> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >>>> --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug >>>> --download-triangle >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: User provided function() line 0 in unknown file >>>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>>> ------------------------------ >>>> *From:* Matthew Knepley [knepley at gmail.com] >>>> *Sent:* Thursday, January 16, 2014 4:37 PM >>>> *To:* Jones,Martin Alexander >>>> *Cc:* petsc-users at mcs.anl.gov >>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>> >>>> On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander < >>>> MAJones2 at mdanderson.org> wrote: >>>> >>>>> Hi, I have downloaded and built the dev version you suggested. I >>>>> think I need the triangle package to run this particular case. Is there any >>>>> thing else that appears wrong in what I have done from the error messages >>>>> below: >>>>> >>>> >>>> Great! Its running. You can reconfigure like this: >>>> >>>> $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py >>>> --download-triangle >>>> >>>> and then rebuild >>>> >>>> make >>>> >>>> and then rerun. You can load meshes, but its much easier to have >>>> triangle create them. >>>> >>>> Thanks for being patient, >>>> >>>> Matt >>>> >>>> >>>>> [0]PETSC ERROR: --------------------- Error Message >>>>> ------------------------------------ >>>>> [0]PETSC ERROR: No support for this operation for this object type! >>>>> [0]PETSC ERROR: Mesh generation needs external package support. >>>>> Please reconfigure with --download-triangle.! >>>>> [0]PETSC ERROR: >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 >>>>> GIT Date: 2014-01-15 20:33:42 -0600 >>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>>> [0]PETSC ERROR: >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by >>>>> mjonesa Thu Jan 16 16:28:20 2014 >>>>> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >>>>> [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 >>>>> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >>>>> --with-clanguage=c++ --with-c2html=0 >>>>> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >>>>> [0]PETSC ERROR: >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: DMPlexGenerate() line 4332 in >>>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c >>>>> [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in >>>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c >>>>> [0]PETSC ERROR: CreateMesh() line 295 in >>>>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>>>> [0]PETSC ERROR: main() line 659 in >>>>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>>>> application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 >>>>> ------------------------------ >>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>> *Sent:* Thursday, January 16, 2014 4:06 PM >>>>> *To:* Jones,Martin Alexander >>>>> *Cc:* petsc-users at mcs.anl.gov >>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>> >>>>> On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander < >>>>> MAJones2 at mdanderson.org> wrote: >>>>> >>>>>> Hi. I changed the ENV variable to the correct entry. when I type >>>>>> make ex12 I get this: >>>>>> >>>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>>>> ex12 >>>>>> g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing >>>>>> -Wno-unknown-pragmas -g -fPIC >>>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include >>>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include >>>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni >>>>>> -D__INSDIR__=src/snes/examples/tutorials/ ex12.c >>>>>> ex12.c:14:18: fatal error: ex12.h: No such file or directory >>>>>> compilation terminated. >>>>>> make: *** [ex12.o] Error 1 >>>>>> >>>>>> Any help of yours is very much appreciated. >>>>>> >>>>> >>>>> Yes, this relates to my 3). This is not going to work for you with >>>>> the release. Please see the link I sent. >>>>> >>>>> Matt >>>>> >>>>> >>>>>> ------------------------------ >>>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>>> *Sent:* Thursday, January 16, 2014 3:58 PM >>>>>> *To:* Jones,Martin Alexander >>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>> >>>>>> On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < >>>>>> MAJones2 at mdanderson.org> wrote: >>>>>> >>>>>>> Thanks! >>>>>>> >>>>>> >>>>>> You built with PETSC_ARCH=arch-linux2-cxx-debug >>>>>> >>>>>> Matt >>>>>> >>>>>> >>>>>>> ------------------------------ >>>>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>>>> *Sent:* Thursday, January 16, 2014 3:31 PM >>>>>>> *To:* Jones,Martin Alexander >>>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>>> >>>>>>> On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < >>>>>>> MAJones2 at mdanderson.org> wrote: >>>>>>> >>>>>>>> Now I went to the directory where ex12.c sits and just did a >>>>>>>> 'make ex12.c' with the following error if this helps? : >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ >>>>>>>> make ex12.c >>>>>>>> >>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >>>>>>>> such file or directory >>>>>>>> >>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >>>>>>>> such file or directory >>>>>>>> >>>>>>>> make: *** No rule to make target >>>>>>>> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >>>>>>>> Stop. >>>>>>>> >>>>>>> >>>>>>> 1) You would type 'make ex12' >>>>>>> >>>>>>> 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or >>>>>>> PETSC_ARCH (linux-gnu-cxx-debug) environment variables >>>>>>> do not match what you built. Please send configure.log and >>>>>>> make.log >>>>>>> >>>>>>> 3) Since it was only recently added, if you want to use the FEM >>>>>>> functionality, you must use the development version: >>>>>>> >>>>>>> http://www.mcs.anl.gov/petsc/developers/index.html >>>>>>> >>>>>>> Thanks, >>>>>>> >>>>>>> Matt >>>>>>> >>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> *From:* Matthew Knepley [mailto:knepley at gmail.com] >>>>>>>> *Sent:* Thursday, January 16, 2014 2:48 PM >>>>>>>> *To:* Jones,Martin Alexander >>>>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >>>>>>>> MAJones2 at mdanderson.org> wrote: >>>>>>>> >>>>>>>> Hello To Whom it Concerns, >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >>>>>>>> dim order dim 1 laplacian dim order dim 1 boundary >>>>>>>> src/snes/examples/tutorials/ex12.h' >>>>>>>> but getting the following error: >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >>>>>>>> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >>>>>>>> Traceback (most recent call last): >>>>>>>> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, >>>>>>>> in >>>>>>>> from FIAT.reference_element import default_simplex >>>>>>>> ImportError: No module named FIAT.reference_element >>>>>>>> >>>>>>>> >>>>>>>> I have removed the requirement of generating the header file (its >>>>>>>> now all handled in C). I thought >>>>>>>> >>>>>>>> I changed the documentation everywhere (including the latest >>>>>>>> tutorial slides). Can you try running >>>>>>>> >>>>>>>> with 'master' (or 'next'), and point me toward the old docs? >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Thanks, >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Matt >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> -- >>>>>>>> What most experimenters take for granted before they begin their >>>>>>>> experiments is infinitely more interesting than any results to which their >>>>>>>> experiments lead. >>>>>>>> -- Norbert Wiener >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> What most experimenters take for granted before they begin their >>>>>>> experiments is infinitely more interesting than any results to which their >>>>>>> experiments lead. >>>>>>> -- Norbert Wiener >>>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> What most experimenters take for granted before they begin their >>>>>> experiments is infinitely more interesting than any results to which their >>>>>> experiments lead. >>>>>> -- Norbert Wiener >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> What most experimenters take for granted before they begin their >>>>> experiments is infinitely more interesting than any results to which their >>>>> experiments lead. >>>>> -- Norbert Wiener >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Tue Jan 28 10:37:23 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 28 Jan 2014 10:37:23 -0600 Subject: [petsc-users] Problems running ex12.c In-Reply-To: References: <8448FFCE4362914496BCEAF8BE810C13EF1D34@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D5E@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D7C@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1D8F@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DA3@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1DBF@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E22@DCPWPEXMBX02.mdanderson.edu> <8448FFCE4362914496BCEAF8BE810C13EF1E50@DCPWPEXMBX02.mdanderson.edu> Message-ID: On Tue, Jan 28, 2014 at 10:31 AM, Yaakoub El Khamra wrote: > > If > ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 > -variable_coefficient field -interpolate 1 -petscspace_order 2 > -show_initial -dm_plex_print_fem > > is for serial, any chance we can get the options to run in parallel? > Just use mpiexec -n Matt > > Regards > Yaakoub El Khamra > > > On Fri, Jan 17, 2014 at 11:29 AM, Matthew Knepley wrote: > >> On Fri, Jan 17, 2014 at 11:06 AM, Jones,Martin Alexander < >> MAJones2 at mdanderson.org> wrote: >> >>> >>> ------------------------------ >>> *From:* Matthew Knepley [knepley at gmail.com] >>> *Sent:* Friday, January 17, 2014 11:04 AM >>> *To:* Jones,Martin Alexander >>> *Cc:* petsc-users at mcs.anl.gov >>> *Subject:* Re: [petsc-users] Problems running ex12.c >>> >>> On Fri, Jan 17, 2014 at 11:00 AM, Jones,Martin Alexander < >>> MAJones2 at mdanderson.org> wrote: >>> >>>> These examples all seem to run excepting the following command, >>>> >>>> ex12 -run_type test -dim 3 -refinement_limit 0.0125 >>>> -variable_coefficient field -interpolate 1 -petscspace_order 2 >>>> -show_initial -dm_plex_print_fem >>>> >>>> I get the following ouput: >>>> >>>> ./ex12 -run_type test -dim 3 -refinement_limit 0.0125 >>>> -variable_coefficient field -interpolate 1 -petscspace_order 2 >>>> -show_initial -dm_plex_print_fem >>>> Local function: >>>> ./ex12: symbol lookup error: >>>> /opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so: undefined >>>> symbol: omp_get_num_procs >>>> >>> >>> This is a build problem, but it should affect all the runs. Is this >>> reproducible? Can you send configure.log? MKL is the worst. If this >>> persists, I would just switch to --download-f-blas-lapack. >>> >> >> Thanks. I have some advice on options >> >> --with-precision=single # I would not use this unless you are doing >> something special, like CUDA >> --with-clanguage=C++ # I would recommend switching to C, the build is >> much faster >> --with-mpi-dir=/usr --with-mpi4py=0 >> --with-shared-libraries --CFLAGS=-O0 --CXXFLAGS=-O0 --with-fc=0 >> --with-etags=1 # This is unnecessary >> >> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >> # Here is the problem, see below >> --download-metis >> --download-fiat=yes --download-generator --download-scientificpython # >> Get rid of these, they are obsolete >> >> Your MKL needs another library for the OpenMP symbols. I would recommend >> switching to --download-f2cblaslapack, >> or you can try and find that library. >> >> Thanks, >> >> Matt >> >> >>> Thanks, >>> >>> Matt >>> >>> >>>> ------------------------------ >>>> *From:* Matthew Knepley [knepley at gmail.com] >>>> *Sent:* Thursday, January 16, 2014 6:35 PM >>>> *To:* Jones,Martin Alexander >>>> *Cc:* petsc-users at mcs.anl.gov >>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>> >>>> On Thu, Jan 16, 2014 at 5:43 PM, Jones,Martin Alexander < >>>> MAJones2 at mdanderson.org> wrote: >>>> >>>>> Hi, This is the next error message after configuring and building >>>>> with the triangle package when trying to run ex12 >>>>> >>>> >>>> This is my fault for bad defaults. I will fix. Try running >>>> >>>> ./ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet >>>> -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 >>>> >>>> for a representative run. Then you could try 3D >>>> >>>> ex12 -run_type test -dim 3 -refinement_limit 0.0125 >>>> -variable_coefficient field -interpolate 1 -petscspace_order 2 >>>> -show_initial -dm_plex_print_fem >>>> >>>> or a full run >>>> >>>> ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate >>>> -petscspace_order 1 >>>> >>>> ex12 -refinement_limit 0.01 -bc_type dirichlet -interpolate >>>> -petscspace_order 2 >>>> >>>> Let me know if those work. >>>> >>>> Thanks, >>>> >>>> Matt >>>> >>>> >>>>> ./ex12 >>>>> [0]PETSC ERROR: >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: Caught signal number 8 FPE: Floating Point >>>>> Exception,probably divide by zero >>>>> [0]PETSC ERROR: Try option -start_in_debugger or >>>>> -on_error_attach_debugger >>>>> [0]PETSC ERROR: or see >>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSCERROR: or try >>>>> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory >>>>> corruption errors >>>>> [0]PETSC ERROR: likely location of problem given in stack below >>>>> [0]PETSC ERROR: --------------------- Stack Frames >>>>> ------------------------------------ >>>>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not >>>>> available, >>>>> [0]PETSC ERROR: INSTEAD the line number of the start of the >>>>> function >>>>> [0]PETSC ERROR: is given. >>>>> [0]PETSC ERROR: [0] DMPlexComputeResidualFEM line 531 >>>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexfem.c >>>>> [0]PETSC ERROR: [0] SNESComputeFunction_DMLocal line 63 >>>>> /home/mjonesa/PETSc/petsc/src/snes/utils/dmlocalsnes.c >>>>> [0]PETSC ERROR: [0] SNES user function line 2088 >>>>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>>>> [0]PETSC ERROR: [0] SNESComputeFunction line 2076 >>>>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>>>> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 144 >>>>> /home/mjonesa/PETSc/petsc/src/snes/impls/ls/ls.c >>>>> [0]PETSC ERROR: [0] SNESSolve line 3765 >>>>> /home/mjonesa/PETSc/petsc/src/snes/interface/snes.c >>>>> [0]PETSC ERROR: --------------------- Error Message >>>>> ------------------------------------ >>>>> [0]PETSC ERROR: Signal received! >>>>> [0]PETSC ERROR: >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 >>>>> GIT Date: 2014-01-15 20:33:42 -0600 >>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>>> [0]PETSC ERROR: >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by >>>>> mjonesa Thu Jan 16 17:41:23 2014 >>>>> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >>>>> [0]PETSC ERROR: Configure run at Thu Jan 16 17:38:33 2014 >>>>> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >>>>> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >>>>> --with-c2html=0 --with-clanguage=c++ PETSC_ARCH=arch-linux2-cxx-debug >>>>> --download-triangle >>>>> [0]PETSC ERROR: >>>>> ------------------------------------------------------------------------ >>>>> [0]PETSC ERROR: User provided function() line 0 in unknown file >>>>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>>>> ------------------------------ >>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>> *Sent:* Thursday, January 16, 2014 4:37 PM >>>>> *To:* Jones,Martin Alexander >>>>> *Cc:* petsc-users at mcs.anl.gov >>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>> >>>>> On Thu, Jan 16, 2014 at 4:33 PM, Jones,Martin Alexander < >>>>> MAJones2 at mdanderson.org> wrote: >>>>> >>>>>> Hi, I have downloaded and built the dev version you suggested. I >>>>>> think I need the triangle package to run this particular case. Is there any >>>>>> thing else that appears wrong in what I have done from the error messages >>>>>> below: >>>>>> >>>>> >>>>> Great! Its running. You can reconfigure like this: >>>>> >>>>> $PETSC_DIR/$PETSC_ARCH/conf/reconfigure-$PETSC_ARCH.py >>>>> --download-triangle >>>>> >>>>> and then rebuild >>>>> >>>>> make >>>>> >>>>> and then rerun. You can load meshes, but its much easier to have >>>>> triangle create them. >>>>> >>>>> Thanks for being patient, >>>>> >>>>> Matt >>>>> >>>>> >>>>>> [0]PETSC ERROR: --------------------- Error Message >>>>>> ------------------------------------ >>>>>> [0]PETSC ERROR: No support for this operation for this object type! >>>>>> [0]PETSC ERROR: Mesh generation needs external package support. >>>>>> Please reconfigure with --download-triangle.! >>>>>> [0]PETSC ERROR: >>>>>> ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2317-gcd0e7f7 >>>>>> GIT Date: 2014-01-15 20:33:42 -0600 >>>>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>>>> [0]PETSC ERROR: >>>>>> ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: ./ex12 on a arch-linux2-cxx-debug named maeda by >>>>>> mjonesa Thu Jan 16 16:28:20 2014 >>>>>> [0]PETSC ERROR: Libraries linked from /home/mjonesa/local/lib >>>>>> [0]PETSC ERROR: Configure run at Thu Jan 16 16:25:53 2014 >>>>>> [0]PETSC ERROR: Configure options --prefix=/home/mjonesa/local >>>>>> --with-clanguage=c++ --with-c2html=0 >>>>>> --with-blas-lapack-lib="[/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_rt.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_intel_thread.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libmkl_core.so,/opt/apps/EPD/epd-7.3-1-rh5-x86_64/lib/libiomp5.so]" >>>>>> [0]PETSC ERROR: >>>>>> ------------------------------------------------------------------------ >>>>>> [0]PETSC ERROR: DMPlexGenerate() line 4332 in >>>>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plex.c >>>>>> [0]PETSC ERROR: DMPlexCreateBoxMesh() line 600 in >>>>>> /home/mjonesa/PETSc/petsc/src/dm/impls/plex/plexcreate.c >>>>>> [0]PETSC ERROR: CreateMesh() line 295 in >>>>>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>>>>> [0]PETSC ERROR: main() line 659 in >>>>>> /home/mjonesa/PETSc/petsc/src/snes/examples/tutorials/ex12.c >>>>>> application called MPI_Abort(MPI_COMM_WORLD, 56) - process 0 >>>>>> ------------------------------ >>>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>>> *Sent:* Thursday, January 16, 2014 4:06 PM >>>>>> *To:* Jones,Martin Alexander >>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>> >>>>>> On Thu, Jan 16, 2014 at 4:05 PM, Jones,Martin Alexander < >>>>>> MAJones2 at mdanderson.org> wrote: >>>>>> >>>>>>> Hi. I changed the ENV variable to the correct entry. when I type >>>>>>> make ex12 I get this: >>>>>>> >>>>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ make >>>>>>> ex12 >>>>>>> g++ -o ex12.o -c -Wall -Wwrite-strings -Wno-strict-aliasing >>>>>>> -Wno-unknown-pragmas -g -fPIC >>>>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include >>>>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/arch-linux2-cxx-debug/include >>>>>>> -I/home/mjonesa/PETSc/petsc-3.4.3/include/mpiuni >>>>>>> -D__INSDIR__=src/snes/examples/tutorials/ ex12.c >>>>>>> ex12.c:14:18: fatal error: ex12.h: No such file or directory >>>>>>> compilation terminated. >>>>>>> make: *** [ex12.o] Error 1 >>>>>>> >>>>>>> Any help of yours is very much appreciated. >>>>>>> >>>>>> >>>>>> Yes, this relates to my 3). This is not going to work for you with >>>>>> the release. Please see the link I sent. >>>>>> >>>>>> Matt >>>>>> >>>>>> >>>>>>> ------------------------------ >>>>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>>>> *Sent:* Thursday, January 16, 2014 3:58 PM >>>>>>> *To:* Jones,Martin Alexander >>>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>>> >>>>>>> On Thu, Jan 16, 2014 at 3:55 PM, Jones,Martin Alexander < >>>>>>> MAJones2 at mdanderson.org> wrote: >>>>>>> >>>>>>>> Thanks! >>>>>>>> >>>>>>> >>>>>>> You built with PETSC_ARCH=arch-linux2-cxx-debug >>>>>>> >>>>>>> Matt >>>>>>> >>>>>>> >>>>>>>> ------------------------------ >>>>>>>> *From:* Matthew Knepley [knepley at gmail.com] >>>>>>>> *Sent:* Thursday, January 16, 2014 3:31 PM >>>>>>>> *To:* Jones,Martin Alexander >>>>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>>>> >>>>>>>> On Thu, Jan 16, 2014 at 3:11 PM, Jones,Martin Alexander < >>>>>>>> MAJones2 at mdanderson.org> wrote: >>>>>>>> >>>>>>>>> Now I went to the directory where ex12.c sits and just did a >>>>>>>>> 'make ex12.c' with the following error if this helps? : >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> mjonesa at maeda:~/PETSc/petsc-3.4.3/src/snes/examples/tutorials$ >>>>>>>>> make ex12.c >>>>>>>>> >>>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/variables:108: >>>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscvariables: No >>>>>>>>> such file or directory >>>>>>>>> >>>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/conf/rules:962: >>>>>>>>> /home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules: No >>>>>>>>> such file or directory >>>>>>>>> >>>>>>>>> make: *** No rule to make target >>>>>>>>> `/home/mjonesa/PETSc/petsc-3.4.3/linux-gnu-cxx-debug/conf/petscrules'. >>>>>>>>> Stop. >>>>>>>>> >>>>>>>> >>>>>>>> 1) You would type 'make ex12' >>>>>>>> >>>>>>>> 2) Either you PETSC_DIR (/home/mjonesa/PETSc/petsc-3.4.3) or >>>>>>>> PETSC_ARCH (linux-gnu-cxx-debug) environment variables >>>>>>>> do not match what you built. Please send configure.log and >>>>>>>> make.log >>>>>>>> >>>>>>>> 3) Since it was only recently added, if you want to use the FEM >>>>>>>> functionality, you must use the development version: >>>>>>>> >>>>>>>> http://www.mcs.anl.gov/petsc/developers/index.html >>>>>>>> >>>>>>>> Thanks, >>>>>>>> >>>>>>>> Matt >>>>>>>> >>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> *From:* Matthew Knepley [mailto:knepley at gmail.com] >>>>>>>>> *Sent:* Thursday, January 16, 2014 2:48 PM >>>>>>>>> *To:* Jones,Martin Alexander >>>>>>>>> *Cc:* petsc-users at mcs.anl.gov >>>>>>>>> *Subject:* Re: [petsc-users] Problems running ex12.c >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> On Thu, Jan 16, 2014 at 2:35 PM, Jones,Martin Alexander < >>>>>>>>> MAJones2 at mdanderson.org> wrote: >>>>>>>>> >>>>>>>>> Hello To Whom it Concerns, >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> I am trying to run the tutorial ex12.c by running 'bin/pythonscripts/PetscGenerateFEMQuadrature.py >>>>>>>>> dim order dim 1 laplacian dim order dim 1 boundary >>>>>>>>> src/snes/examples/tutorials/ex12.h' >>>>>>>>> but getting the following error: >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> $ bin/pythonscripts/PetscGenerateFEMQuadrature.py dim order dim 1 >>>>>>>>> laplacian dim order dim 1 boundary src/snes/examples/tutorials/ex12.h >>>>>>>>> Traceback (most recent call last): >>>>>>>>> File "bin/pythonscripts/PetscGenerateFEMQuadrature.py", line 15, >>>>>>>>> in >>>>>>>>> from FIAT.reference_element import default_simplex >>>>>>>>> ImportError: No module named FIAT.reference_element >>>>>>>>> >>>>>>>>> >>>>>>>>> I have removed the requirement of generating the header file (its >>>>>>>>> now all handled in C). I thought >>>>>>>>> >>>>>>>>> I changed the documentation everywhere (including the latest >>>>>>>>> tutorial slides). Can you try running >>>>>>>>> >>>>>>>>> with 'master' (or 'next'), and point me toward the old docs? >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> Matt >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> What most experimenters take for granted before they begin their >>>>>>>>> experiments is infinitely more interesting than any results to which their >>>>>>>>> experiments lead. >>>>>>>>> -- Norbert Wiener >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> -- >>>>>>>> What most experimenters take for granted before they begin their >>>>>>>> experiments is infinitely more interesting than any results to which their >>>>>>>> experiments lead. >>>>>>>> -- Norbert Wiener >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> What most experimenters take for granted before they begin their >>>>>>> experiments is infinitely more interesting than any results to which their >>>>>>> experiments lead. >>>>>>> -- Norbert Wiener >>>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> What most experimenters take for granted before they begin their >>>>>> experiments is infinitely more interesting than any results to which their >>>>>> experiments lead. >>>>>> -- Norbert Wiener >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> What most experimenters take for granted before they begin their >>>>> experiments is infinitely more interesting than any results to which their >>>>> experiments lead. >>>>> -- Norbert Wiener >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From ckontzialis at lycos.com Tue Jan 28 12:49:39 2014 From: ckontzialis at lycos.com (Konstantinos Kontzialis) Date: Tue, 28 Jan 2014 18:49:39 +0000 (UTC) Subject: [petsc-users] Problems with TS Message-ID: <39045451.63620.1390934980030.JavaMail.mail@webmail11> An HTML attachment was scrubbed... URL: From knepley at gmail.com Tue Jan 28 12:52:48 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 28 Jan 2014 12:52:48 -0600 Subject: [petsc-users] Problems with TS In-Reply-To: <39045451.63620.1390934980030.JavaMail.mail@webmail11> References: <39045451.63620.1390934980030.JavaMail.mail@webmail11> Message-ID: On Tue, Jan 28, 2014 at 12:49 PM, Konstantinos Kontzialis < ckontzialis at lycos.com> wrote: > Dear all, > > I'm trying to solve the magnetic induction equation on a 3D finite > element mesh. > I'm coding the following: > > call TSCreate (petsc_comm_world, ts_mhd, ierpetsc) > > call TSSetIFunction ( ts_mhd, res_mhd, residual_mag, > @ PETSC_NULL_OBJECT, ierpetsc ) > > call TSSetSolution( ts_mhd, Bmagnetic_pet, ierpetsc ) > > call TSGetSNES (ts_mhd, snes_mhd, ierpetsc ) > > call MatCreateSNESMF ( snes_mhd, J_mf, ierpetsc ) > > call TSSetMaxSNESFailures ( ts_mhd,-1,ierpetsc ) > > call SNESSetJacobian ( snes_mhd, J_mf, M_mhd, > @ PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT, ierpetsc ) > > call TSSetFromOptions ( ts_mhd, ierpetsc ) > > call TSSolve ( ts_mhd, PETSC_NULL_OBJECT, ierpetsc) > > and I run with the following options: > > -ts_dt 1.0e-2 > -ts_type beuler > -ts_final_time 1.0 > -ts_view > > But, when my code reaches TSSolve it gives an error: > > ERROR: [0 mhdsol] Segmentation fault - (Invalid memory reference) > > Any ideas or suggestions on what to do? > Run with valgrind. Matt > Regards, > > Kostas > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From daveliu at mit.edu Tue Jan 28 13:36:08 2014 From: daveliu at mit.edu (David Liu) Date: Tue, 28 Jan 2014 14:36:08 -0500 Subject: [petsc-users] reusing LU factorization? Message-ID: Hi, I'm writing an application that solves a sparse matrix many times using Pastix. I notice that the first solves takes a very long time, while the subsequent solves are very fast. I don't fully understand what's going on behind the curtains, but I'm guessing it's because the very first solve has to read in the non-zero structure for the LU factorization, while the subsequent solves are faster because the nonzero structure doesn't change. My question is, is there any way to save the information obtained from the very first solve, so that the next time I run the application, the very first solve can be fast too (provided that I still have the same nonzero structure)? -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Tue Jan 28 13:38:50 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 28 Jan 2014 13:38:50 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: Message-ID: On Tue, Jan 28, 2014 at 1:36 PM, David Liu wrote: > Hi, I'm writing an application that solves a sparse matrix many times > using Pastix. I notice that the first solves takes a very long time, while > the subsequent solves are very fast. I don't fully understand what's going > on behind the curtains, but I'm guessing it's because the very first solve > has to read in the non-zero structure for the LU factorization, while the > subsequent solves are faster because the nonzero structure doesn't change. > > My question is, is there any way to save the information obtained from the > very first solve, so that the next time I run the application, the very > first solve can be fast too (provided that I still have the same nonzero > structure)? > No, we do not persist the factored matrices. Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Tue Jan 28 13:58:39 2014 From: jed at jedbrown.org (Jed Brown) Date: Tue, 28 Jan 2014 13:58:39 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: Message-ID: <87iot3naj4.fsf@jedbrown.org> David Liu writes: > Hi, I'm writing an application that solves a sparse matrix many times using > Pastix. I notice that the first solves takes a very long time, while the > subsequent solves are very fast. I don't fully understand what's going on > behind the curtains, but I'm guessing it's because the very first solve has > to read in the non-zero structure for the LU factorization, while the > subsequent solves are faster because the nonzero structure doesn't change. How are you doing this? Repeated calls to KSPSolve? Are you changing the operator between solves? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From daveliu at mit.edu Tue Jan 28 14:09:15 2014 From: daveliu at mit.edu (David Liu) Date: Tue, 28 Jan 2014 15:09:15 -0500 Subject: [petsc-users] reusing LU factorization? In-Reply-To: <87iot3naj4.fsf@jedbrown.org> References: <87iot3naj4.fsf@jedbrown.org> Message-ID: yes, I am repeatedly calling KSPSolve. I set the operator once at the beginning, but I change some of the elements of the operator between solves without changing the nonzero pattern. On Tue, Jan 28, 2014 at 2:58 PM, Jed Brown wrote: > David Liu writes: > > > Hi, I'm writing an application that solves a sparse matrix many times > using > > Pastix. I notice that the first solves takes a very long time, while the > > subsequent solves are very fast. I don't fully understand what's going on > > behind the curtains, but I'm guessing it's because the very first solve > has > > to read in the non-zero structure for the LU factorization, while the > > subsequent solves are faster because the nonzero structure doesn't > change. > > How are you doing this? Repeated calls to KSPSolve? Are you changing > the operator between solves? > -------------- next part -------------- An HTML attachment was scrubbed... URL: From tgross at ilsb.tuwien.ac.at Tue Jan 28 16:00:26 2014 From: tgross at ilsb.tuwien.ac.at (Thomas Gross) Date: Tue, 28 Jan 2014 23:00:26 +0100 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <87iot5nosv.fsf@jedbrown.org> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> Message-ID: <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> I have now compiled Petsc 3.2.0 with Prometheus and Petsc 3.4.3 with GAMG using the same compiler. Furthermore I am using the same MPI implementation for both runs. Still Prometheus is considerably faster (see attached log files). Prometheus: -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -options_left > Prometheus_Large_Log_New.txt Gamg: -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_Large_max_it_log_New.txt -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_Large_Rich_Log_New.txt Best Thomas -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: Prometheus_Large_Log_New.txt URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_Large_max_it_Log_New.txt URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_Large_Rich_Log_New.txt URL: -------------- next part -------------- Am 27.01.2014 um 21:38 schrieb Jed Brown : > Thomas Gross writes: > >> I was using a Newton Loop in Feap with a higher accuracy. This caused >> FEAP8.4 to call KSPSolve with GAMG 3 times but FEAP8.3 to call >> KSPSolve with Prometheus only 1 time. I have now used a larger mesh >> and adapted the FEAP solve file to call KSPSolve only once for GAMG >> and Prometheus. However, Prometheus is about 3 times faster then GAMG >> (see attached log files). > > At the very least, you're using different compilers and a different MPI > implementation (perhaps one is infiniband?). Communication time is very > different in these cases. Should fix that before thinking harder about > this. From bsmith at mcs.anl.gov Tue Jan 28 16:04:41 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 28 Jan 2014 16:04:41 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: Message-ID: On Jan 28, 2014, at 1:36 PM, David Liu wrote: > Hi, I'm writing an application that solves a sparse matrix many times using Pastix. I notice that the first solves takes a very long time, Is it the first ?solve? or the first time you put values into that matrix that ?takes a long time?? If you are not properly preallocating the matrix then the initial setting of values will be slow and waste memory. See http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html The symbolic factorization is usually much faster than a numeric factorization so that is not the cause of the slow ?first solve?. Barry > while the subsequent solves are very fast. I don't fully understand what's going on behind the curtains, but I'm guessing it's because the very first solve has to read in the non-zero structure for the LU factorization, while the subsequent solves are faster because the nonzero structure doesn't change. > > My question is, is there any way to save the information obtained from the very first solve, so that the next time I run the application, the very first solve can be fast too (provided that I still have the same nonzero structure)? From daveliu at mit.edu Tue Jan 28 17:23:34 2014 From: daveliu at mit.edu (David Liu) Date: Tue, 28 Jan 2014 18:23:34 -0500 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: Message-ID: wow that is news to me. I always assumed that this is normal. I'm pretty certain it's not the preallocation. I'm using MatCreateMPI, and to my knowledge I wouldn't even be able to set the values without crashing if I didn't preallocate. (If I'm not mistaken, the setting values slowly without preallocating is only possible if you create the Mat using MatCreate + MatSetup). Also, I'm certain that the time is taken on the first solve, not the setting of values, because I use the matrix in a MatMult first to get the RHS before solving, and the MatMult happens before the long first solve. On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith wrote: > > On Jan 28, 2014, at 1:36 PM, David Liu wrote: > > > Hi, I'm writing an application that solves a sparse matrix many times > using Pastix. I notice that the first solves takes a very long time, > > Is it the first "solve" or the first time you put values into that > matrix that "takes a long time"? If you are not properly preallocating the > matrix then the initial setting of values will be slow and waste memory. > See > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html > > The symbolic factorization is usually much faster than a numeric > factorization so that is not the cause of the slow "first solve". > > Barry > > > > > while the subsequent solves are very fast. I don't fully understand > what's going on behind the curtains, but I'm guessing it's because the very > first solve has to read in the non-zero structure for the LU factorization, > while the subsequent solves are faster because the nonzero structure > doesn't change. > > > > My question is, is there any way to save the information obtained from > the very first solve, so that the next time I run the application, the very > first solve can be fast too (provided that I still have the same nonzero > structure)? > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From stali at geology.wisc.edu Tue Jan 28 17:25:28 2014 From: stali at geology.wisc.edu (Tabrez Ali) Date: Tue, 28 Jan 2014 17:25:28 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: Message-ID: <52E83C68.5030404@geology.wisc.edu> Hello This is my observation as well (with MUMPS). The first solve (after assembly which is super fast) takes a few mins (for ~1 million unknowns on 12/24 cores) but from then on only a few seconds for each subsequent solve for each time step. Perhaps symbolic factorization in MUMPS is all serial? Like the OP I often do multiple runs on the same problem but I dont know if MUMPS or any other direct solver can save the symbolic factorization info to a file that perhaps can be utilized in subsequent reruns to avoid the costly "first solves". Tabrez On 01/28/2014 04:04 PM, Barry Smith wrote: > On Jan 28, 2014, at 1:36 PM, David Liu wrote: > >> Hi, I'm writing an application that solves a sparse matrix many times using Pastix. I notice that the first solves takes a very long time, > Is it the first ?solve? or the first time you put values into that matrix that ?takes a long time?? If you are not properly preallocating the matrix then the initial setting of values will be slow and waste memory. See http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html > > The symbolic factorization is usually much faster than a numeric factorization so that is not the cause of the slow ?first solve?. > > Barry > > > >> while the subsequent solves are very fast. I don't fully understand what's going on behind the curtains, but I'm guessing it's because the very first solve has to read in the non-zero structure for the LU factorization, while the subsequent solves are faster because the nonzero structure doesn't change. >> >> My question is, is there any way to save the information obtained from the very first solve, so that the next time I run the application, the very first solve can be fast too (provided that I still have the same nonzero structure)? -- No one trusts a model except the one who wrote it; Everyone trusts an observation except the one who made it- Harlow Shapley From bsmith at mcs.anl.gov Tue Jan 28 17:34:16 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 28 Jan 2014 17:34:16 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: Message-ID: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> Ok then use -log_summary and put the first solve in a separate stage (see PetscStageRegister()) and send the results of a run back demonstrating the slow first solver and we may be able to see what the story is. Barry On Jan 28, 2014, at 5:23 PM, David Liu wrote: > wow that is news to me. I always assumed that this is normal. > > I'm pretty certain it's not the preallocation. I'm using MatCreateMPI, and to my knowledge I wouldn't even be able to set the values without crashing if I didn't preallocate. (If I'm not mistaken, the setting values slowly without preallocating is only possible if you create the Mat using MatCreate + MatSetup). > > Also, I'm certain that the time is taken on the first solve, not the setting of values, because I use the matrix in a MatMult first to get the RHS before solving, and the MatMult happens before the long first solve. > > > On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith wrote: > > On Jan 28, 2014, at 1:36 PM, David Liu wrote: > > > Hi, I'm writing an application that solves a sparse matrix many times using Pastix. I notice that the first solves takes a very long time, > > Is it the first ?solve? or the first time you put values into that matrix that ?takes a long time?? If you are not properly preallocating the matrix then the initial setting of values will be slow and waste memory. See http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html > > The symbolic factorization is usually much faster than a numeric factorization so that is not the cause of the slow ?first solve?. > > Barry > > > > > while the subsequent solves are very fast. I don't fully understand what's going on behind the curtains, but I'm guessing it's because the very first solve has to read in the non-zero structure for the LU factorization, while the subsequent solves are faster because the nonzero structure doesn't change. > > > > My question is, is there any way to save the information obtained from the very first solve, so that the next time I run the application, the very first solve can be fast too (provided that I still have the same nonzero structure)? > > From knepley at gmail.com Tue Jan 28 17:39:06 2014 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 28 Jan 2014 17:39:06 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: <52E83C68.5030404@geology.wisc.edu> References: <52E83C68.5030404@geology.wisc.edu> Message-ID: On Tue, Jan 28, 2014 at 5:25 PM, Tabrez Ali wrote: > Hello > > This is my observation as well (with MUMPS). The first solve (after > assembly which is super fast) takes a few mins (for ~1 million unknowns on > 12/24 cores) but from then on only a few seconds for each subsequent solve > for each time step. > > Perhaps symbolic factorization in MUMPS is all serial? > Yes, it is. Matt > Like the OP I often do multiple runs on the same problem but I dont know > if MUMPS or any other direct solver can save the symbolic factorization > info to a file that perhaps can be utilized in subsequent reruns to avoid > the costly "first solves". > > Tabrez > > > On 01/28/2014 04:04 PM, Barry Smith wrote: > >> On Jan 28, 2014, at 1:36 PM, David Liu wrote: >> >> Hi, I'm writing an application that solves a sparse matrix many times >>> using Pastix. I notice that the first solves takes a very long time, >>> >> Is it the first "solve" or the first time you put values into that >> matrix that "takes a long time"? If you are not properly preallocating the >> matrix then the initial setting of values will be slow and waste memory. >> See http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/ >> MatXAIJSetPreallocation.html >> >> The symbolic factorization is usually much faster than a numeric >> factorization so that is not the cause of the slow "first solve". >> >> Barry >> >> >> >> while the subsequent solves are very fast. I don't fully understand >>> what's going on behind the curtains, but I'm guessing it's because the very >>> first solve has to read in the non-zero structure for the LU factorization, >>> while the subsequent solves are faster because the nonzero structure >>> doesn't change. >>> >>> My question is, is there any way to save the information obtained from >>> the very first solve, so that the next time I run the application, the very >>> first solve can be fast too (provided that I still have the same nonzero >>> structure)? >>> >> > > -- > No one trusts a model except the one who wrote it; Everyone trusts an > observation except the one who made it- Harlow Shapley > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Tue Jan 28 17:48:12 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 28 Jan 2014 17:48:12 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <52E83C68.5030404@geology.wisc.edu> Message-ID: On Jan 28, 2014, at 5:39 PM, Matthew Knepley wrote: > On Tue, Jan 28, 2014 at 5:25 PM, Tabrez Ali wrote: > Hello > > This is my observation as well (with MUMPS). The first solve (after assembly which is super fast) takes a few mins (for ~1 million unknowns on 12/24 cores) but from then on only a few seconds for each subsequent solve for each time step. > > Perhaps symbolic factorization in MUMPS is all serial? > > Yes, it is. I missed this. I was just assuming a PETSc LU. Yes, I have no idea of relative time of symbolic and numeric for those other packages. Barry > > Matt > > Like the OP I often do multiple runs on the same problem but I dont know if MUMPS or any other direct solver can save the symbolic factorization info to a file that perhaps can be utilized in subsequent reruns to avoid the costly "first solves". > > Tabrez > > > On 01/28/2014 04:04 PM, Barry Smith wrote: > On Jan 28, 2014, at 1:36 PM, David Liu wrote: > > Hi, I'm writing an application that solves a sparse matrix many times using Pastix. I notice that the first solves takes a very long time, > Is it the first ?solve? or the first time you put values into that matrix that ?takes a long time?? If you are not properly preallocating the matrix then the initial setting of values will be slow and waste memory. See http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html > > The symbolic factorization is usually much faster than a numeric factorization so that is not the cause of the slow ?first solve?. > > Barry > > > > while the subsequent solves are very fast. I don't fully understand what's going on behind the curtains, but I'm guessing it's because the very first solve has to read in the non-zero structure for the LU factorization, while the subsequent solves are faster because the nonzero structure doesn't change. > > My question is, is there any way to save the information obtained from the very first solve, so that the next time I run the application, the very first solve can be fast too (provided that I still have the same nonzero structure)? > > > -- > No one trusts a model except the one who wrote it; Everyone trusts an observation except the one who made it- Harlow Shapley > > > > > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > -- Norbert Wiener From hzhang at mcs.anl.gov Wed Jan 29 09:18:34 2014 From: hzhang at mcs.anl.gov (Hong Zhang) Date: Wed, 29 Jan 2014 09:18:34 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: <1b8020f75d5a4520b5053159384d14f8@LUCKMAN.anl.gov> References: <52E83C68.5030404@geology.wisc.edu> <1b8020f75d5a4520b5053159384d14f8@LUCKMAN.anl.gov> Message-ID: MUMPS now supports parallel symbolic factorization. With petsc-3.4 interface, you can use runtime option -mat_mumps_icntl_28 <1>: ICNTL(28): use 1 for sequential analysis and ictnl(7) ordering, or 2 for parallel analysis and ictnl(29) ordering -mat_mumps_icntl_29 <0>: ICNTL(29): parallel ordering 1 = ptscotch 2 = parmetis e.g, '-mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2' activates parallel symbolic factorization with pametis for matrix ordering. Give it a try and let us know what you get. Hong On Tue, Jan 28, 2014 at 5:48 PM, Smith, Barry F. wrote: > > On Jan 28, 2014, at 5:39 PM, Matthew Knepley wrote: > > > On Tue, Jan 28, 2014 at 5:25 PM, Tabrez Ali > wrote: > > Hello > > > > This is my observation as well (with MUMPS). The first solve (after > assembly which is super fast) takes a few mins (for ~1 million unknowns on > 12/24 cores) but from then on only a few seconds for each subsequent solve > for each time step. > > > > Perhaps symbolic factorization in MUMPS is all serial? > > > > Yes, it is. > > I missed this. I was just assuming a PETSc LU. Yes, I have no idea of > relative time of symbolic and numeric for those other packages. > > Barry > > > > Matt > > > > Like the OP I often do multiple runs on the same problem but I dont know > if MUMPS or any other direct solver can save the symbolic factorization > info to a file that perhaps can be utilized in subsequent reruns to avoid > the costly "first solves". > > > > Tabrez > > > > > > On 01/28/2014 04:04 PM, Barry Smith wrote: > > On Jan 28, 2014, at 1:36 PM, David Liu wrote: > > > > Hi, I'm writing an application that solves a sparse matrix many times > using Pastix. I notice that the first solves takes a very long time, > > Is it the first "solve" or the first time you put values into that > matrix that "takes a long time"? If you are not properly preallocating the > matrix then the initial setting of values will be slow and waste memory. > See > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html > > > > The symbolic factorization is usually much faster than a numeric > factorization so that is not the cause of the slow "first solve". > > > > Barry > > > > > > > > while the subsequent solves are very fast. I don't fully understand > what's going on behind the curtains, but I'm guessing it's because the very > first solve has to read in the non-zero structure for the LU factorization, > while the subsequent solves are faster because the nonzero structure > doesn't change. > > > > My question is, is there any way to save the information obtained from > the very first solve, so that the next time I run the application, the very > first solve can be fast too (provided that I still have the same nonzero > structure)? > > > > > > -- > > No one trusts a model except the one who wrote it; Everyone trusts an > observation except the one who made it- Harlow Shapley > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > > -- Norbert Wiener > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From ckontzialis at lycos.com Wed Jan 29 10:09:30 2014 From: ckontzialis at lycos.com (Konstantinos Kontzialis) Date: Wed, 29 Jan 2014 16:09:30 +0000 (UTC) Subject: [petsc-users] TS matrix free Message-ID: <1937658589.80277.1391011770987.JavaMail.mail@webmail11> An HTML attachment was scrubbed... URL: From brune at mcs.anl.gov Wed Jan 29 10:20:34 2014 From: brune at mcs.anl.gov (Peter Brune) Date: Wed, 29 Jan 2014 10:20:34 -0600 Subject: [petsc-users] TS matrix free In-Reply-To: <1937658589.80277.1391011770987.JavaMail.mail@webmail11> References: <1937658589.80277.1391011770987.JavaMail.mail@webmail11> Message-ID: Please send the entire error output. - Peter On Wed, Jan 29, 2014 at 10:09 AM, Konstantinos Kontzialis < ckontzialis at lycos.com> wrote: > Dear all, > > I am using a matrix free method with a user defined preconditioner. > I run with the option -snes_mf_operator, but I get the following: > > Must call DMShellSetMatrix() or DMShellSetCreateMatrix()! > > Why is this happening? I use the TS library. > > Kostas > -------------- next part -------------- An HTML attachment was scrubbed... URL: From lb2653 at columbia.edu Wed Jan 29 10:21:24 2014 From: lb2653 at columbia.edu (Luc Berger-Vergiat) Date: Wed, 29 Jan 2014 11:21:24 -0500 Subject: [petsc-users] TS matrix free In-Reply-To: <1937658589.80277.1391011770987.JavaMail.mail@webmail11> References: <1937658589.80277.1391011770987.JavaMail.mail@webmail11> Message-ID: <1E60A206-166D-46DA-990C-2C4EACAEC97A@columbia.edu> You might want to give a look at KSPSetDMActive() to use a DM description of the problem without forming your operator. Best, Luc On 29 janv. 2014, at 11:09, Konstantinos Kontzialis wrote: > Dear all, > > I am using a matrix free method with a user defined preconditioner. > I run with the option -snes_mf_operator, but I get the following: > > Must call DMShellSetMatrix() or DMShellSetCreateMatrix()! > > Why is this happening? I use the TS library. > > Kostas -------------- next part -------------- An HTML attachment was scrubbed... URL: From daveliu at mit.edu Wed Jan 29 10:48:06 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 29 Jan 2014 11:48:06 -0500 Subject: [petsc-users] reusing LU factorization? In-Reply-To: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> Message-ID: Sure thing. Here is a run where the first solve took about 34s, while the second solve took about 2 s. =========================== ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- ./SaltOut on a REAL named nid00407 with 12 processors, by Unknown Wed Jan 29 11:33:44 2014 Using Petsc Release Version 3.3.0, Patch 4, Fri Oct 26 10:46:51 CDT 2012 Max Max/Min Avg Total Time (sec): 3.979e+01 1.00000 3.979e+01 Objects: 1.070e+02 1.00000 1.070e+02 Flops: 2.431e+07 1.75268 1.478e+07 1.773e+08 Flops/sec: 6.108e+05 1.75268 3.714e+05 4.456e+06 MPI Messages: 4.845e+02 1.53081 3.612e+02 4.335e+03 MPI Message Lengths: 1.770e+07 1.45602 3.721e+04 1.613e+08 MPI Reductions: 2.810e+02 1.00000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 0: Main Stage: 3.9795e+01 100.0% 1.7734e+08 100.0% 4.335e+03 100.0% 3.721e+04 100.0% 2.800e+02 99.6% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flops: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent Avg. len: average message length Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %f - percent flops in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage VecView 1 1.0 1.6816e+0011.5 0.00e+00 0.0 1.1e+01 1.7e+05 0.0e+00 2 0 0 1 0 2 0 0 1 0 0 VecMDot 6 1.0 2.8601e-03 1.3 5.62e+05 1.0 0.0e+00 0.0e+00 6.0e+00 0 4 0 0 2 0 4 0 0 2 2356 VecNorm 12 1.0 1.5430e-03 1.3 5.18e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 4 0 0 4 0 4 0 0 4 4032 VecScale 14 1.0 2.8896e-04 1.2 3.02e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 12558 VecCopy 26 1.0 3.6035e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 52 1.0 3.0789e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 6 1.0 5.8293e-04 1.2 2.59e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 5336 VecMAXPY 8 1.0 9.5987e-04 1.2 8.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 6 0 0 0 0 6 0 0 0 10261 VecAssemblyBegin 41 1.0 7.6625e-0131.1 0.00e+00 0.0 6.6e+01 4.9e+04 1.2e+02 2 0 2 2 44 2 0 2 2 44 0 VecAssemblyEnd 41 1.0 4.5586e-04 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 1 1.0 2.1911e-04 1.2 2.16e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1183 VecScatterBegin 60 1.0 2.2238e-02 1.2 0.00e+00 0.0 3.5e+03 4.2e+04 0.0e+00 0 0 81 92 0 0 0 81 92 0 0 VecScatterEnd 60 1.0 6.2252e-02 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 8 1.0 1.0526e-03 1.4 5.18e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 4 0 0 3 0 4 0 0 3 5910 MatMult 10 1.0 1.3628e-01 1.3 2.18e+07 1.9 1.3e+03 8.7e+04 0.0e+00 0 83 30 72 0 0 83 30 72 0 1083 MatSolve 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 MatLUFactorSym 1 1.0 4.4394e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 3.3686e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 85 0 0 0 0 85 0 0 0 0 0 MatAssemblyBegin 7 1.0 4.4827e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 1.4e+01 0 0 0 0 5 0 0 0 0 5 0 MatAssemblyEnd 7 1.0 2.1890e-01 1.1 0.00e+00 0.0 2.6e+02 2.2e+04 8.0e+00 1 0 6 4 3 1 0 6 4 3 0 KSPGMRESOrthog 6 1.0 3.5851e-03 1.2 1.12e+06 1.0 0.0e+00 0.0e+00 6.0e+00 0 8 0 0 2 0 8 0 0 2 3760 KSPSetUp 1 1.0 8.0609e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 2 1.0 3.6561e+01 1.0 1.51e+07 1.7 7.9e+02 8.7e+04 2.2e+01 92 63 18 43 8 92 63 18 43 8 3 PCSetUp 1 1.0 3.3688e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 8.0e+00 85 0 0 0 3 85 0 0 0 3 0 PCApply 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Vector 50 50 6210712 0 Vector Scatter 15 15 15540 0 Index Set 32 32 465324 0 Matrix 6 6 21032760 0 Krylov Solver 1 1 18288 0 Preconditioner 1 1 936 0 Viewer 2 1 712 0 ======================================================================================================================== Average time to get PetscTime(): 9.53674e-08 Average time for MPI_Barrier(): 5.38826e-06 Average time for zero size MPI_Send(): 9.57648e-06 #PETSc Option Table entries: -Dmax 0.01 -LowerPML 0 -Mx 72 -My 60 -Mz 4 -Nc 3 -Npmlx 0 -Npmly 0 -Npmlz 3 -Nx 72 -Ny 60 -Nz 10 -dD 0.01 -epsfile eps3dhi.txt -fproffile fprof3dhi.txt -gamma 2.0 -hx 0.0625 -hy 0.061858957413174 -hz 0.2 -in0 pass -log_summary -norm 0.01 -out0 above -pc_factor_mat_solver_package superlu_dist -pc_type lu -printnewton 1 -wa 1.5 #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure run at: Wed Apr 17 13:30:40 2013 Configure options: --prefix=/sw/xt/petsc/3.3/cnl3.1_pgi11.9.0 --PETSC_ARCH=REAL --known-level1-dcache-assoc=2 --known-level1-dcache-size=65536 --known-level1-dcache-linesize=64 --with-cc=cc --with-fc=ftn --with-cxx=CC --with-fortran --with-fortran-interfaces=1 --with-single-library=1 --with-shared-libraries=0 --with-scalar-type=real --with-debugging=0 --known-mpi-shared-libraries=0 --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --known-memcmp-ok=1 --COPTFLAGS=-fast -Mipa=fast --FOPTFLAGS=-fast -Mipa=fast --with-blas-lapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a --with-scalapack=1 --with-scalapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a --with-scalapack-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include --with-ptscotch=1 --download-ptscotch=yes --with-blacs=1 --with-blacs-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a --with-blacs-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include --with-superlu_dist=1 --download-superlu_dist=yes --with-metis=1 --download-metis=yes --with-parmetis=1 --download-parmetis=yes --with-mumps=1 --download-mumps=yes --with-hypre=1 --download-hypre --with-fftw=1 --with-fftw-dir=/opt/fftw/3.3.0.0/x86_64 --with-hdf5=1 --with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.6/pgi/109 ----------------------------------------- Libraries compiled on Wed Apr 17 13:30:40 2013 on krakenpf3 Machine characteristics: Linux-2.6.27.48-0.12.1_1.0301.5943-cray_ss_s-x86_64-with-SuSE-11-x86_64 Using PETSc directory: /nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4 Using PETSc arch: REAL ----------------------------------------- Using C compiler: cc -fast ${COPTFLAGS} ${CFLAGS} Using Fortran compiler: ftn -fast ${FOPTFLAGS} ${FFLAGS} ----------------------------------------- Using include paths: -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include -I/opt/fftw/3.3.0.0/x86_64/include-I/opt/cray/hdf5-parallel/1.8.6/pgi/109/include -I/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/include -I/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/include -I/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/include -I/opt/xt-libsci/11.0.06/pgi/109/istanbul/include -I/usr/include/alps ----------------------------------------- Using C linker: cc Using Fortran linker: ftn Using libraries: -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -lpetsc -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -lsuperlu_dist_3.1 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lptesmumps -lptscotch -lptscotcherr -Wl,-rpath,/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -L/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -lsci_pgi -lsci_pgi -lpthread -Wl,-rpath,/opt/fftw/3.3.0.0/x86_64/lib -L/opt/fftw/3.3.0.0/x86_64/lib-lfftw3_mpi -lfftw3 -lHYPRE -L/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/lib64 -L/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/lib64 -L/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/lib -L/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -L/usr/lib/alps -L/opt/pgi/11.9.0/linux86-64/11.9/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -L/opt/cray/atp/1.4.1/lib -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals -lalpslli -lalpsutil -lpthread -Wl,-rpath,/opt/pgi/11.9.0/linux86-64/11.9/lib -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lsci_pgi -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -ldl -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals -lalpslli -lalpsutil -lpthread -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lm -lz -lz -ldl ----------------------------------------- On Tue, Jan 28, 2014 at 6:34 PM, Barry Smith wrote: > > Ok then use -log_summary and put the first solve in a separate stage > (see PetscStageRegister()) and send the results of a run back demonstrating > the slow first solver and we may be able to see what the story is. > > Barry > > On Jan 28, 2014, at 5:23 PM, David Liu wrote: > > > wow that is news to me. I always assumed that this is normal. > > > > I'm pretty certain it's not the preallocation. I'm using MatCreateMPI, > and to my knowledge I wouldn't even be able to set the values without > crashing if I didn't preallocate. (If I'm not mistaken, the setting values > slowly without preallocating is only possible if you create the Mat using > MatCreate + MatSetup). > > > > Also, I'm certain that the time is taken on the first solve, not the > setting of values, because I use the matrix in a MatMult first to get the > RHS before solving, and the MatMult happens before the long first solve. > > > > > > On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith wrote: > > > > On Jan 28, 2014, at 1:36 PM, David Liu wrote: > > > > > Hi, I'm writing an application that solves a sparse matrix many times > using Pastix. I notice that the first solves takes a very long time, > > > > Is it the first "solve" or the first time you put values into that > matrix that "takes a long time"? If you are not properly preallocating the > matrix then the initial setting of values will be slow and waste memory. > See > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html > > > > The symbolic factorization is usually much faster than a numeric > factorization so that is not the cause of the slow "first solve". > > > > Barry > > > > > > > > > while the subsequent solves are very fast. I don't fully understand > what's going on behind the curtains, but I'm guessing it's because the very > first solve has to read in the non-zero structure for the LU factorization, > while the subsequent solves are faster because the nonzero structure > doesn't change. > > > > > > My question is, is there any way to save the information obtained from > the very first solve, so that the next time I run the application, the very > first solve can be fast too (provided that I still have the same nonzero > structure)? > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From stali at geology.wisc.edu Wed Jan 29 11:13:29 2014 From: stali at geology.wisc.edu (Tabrez Ali) Date: Wed, 29 Jan 2014 11:13:29 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <52E83C68.5030404@geology.wisc.edu> <1b8020f75d5a4520b5053159384d14f8@LUCKMAN.anl.gov> Message-ID: <52E936B9.30502@geology.wisc.edu> I am getting the opposite result, i.e., MUMPS becomes slower when using ParMETIS for parallel ordering. What did I mess up? Is the problem too small? Case 1 took 24.731s $ rm -f *vtk; time mpiexec -n 16 ./defmod -f point.inp -pc_type lu -pc_factor_mat_solver_package mumps -mat_mumps_icntl_4 1 -log_summary > 1.txt Case 2 with "-mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2" took 34.720s $ rm -f *vtk; time mpiexec -n 16 ./defmod -f point.inp -pc_type lu -pc_factor_mat_solver_package mumps -mat_mumps_icntl_4 1 -log_summary -mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2 > 2.txt Both 1.txt and 2.txt are attached. Regards, Tabrez On 01/29/2014 09:18 AM, Hong Zhang wrote: > MUMPS now supports parallel symbolic factorization. With petsc-3.4 > interface, you can use runtime option > > -mat_mumps_icntl_28 <1>: ICNTL(28): use 1 for sequential analysis > and ictnl(7) ordering, or 2 for parallel analysis and ictnl(29) ordering > -mat_mumps_icntl_29 <0>: ICNTL(29): parallel ordering 1 = ptscotch 2 > = parmetis > > e.g, '-mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2' activates parallel > symbolic factorization with pametis for matrix ordering. > Give it a try and let us know what you get. > > Hong > > > On Tue, Jan 28, 2014 at 5:48 PM, Smith, Barry F. > wrote: > > > On Jan 28, 2014, at 5:39 PM, Matthew Knepley > wrote: > > > On Tue, Jan 28, 2014 at 5:25 PM, Tabrez Ali > > wrote: > > Hello > > > > This is my observation as well (with MUMPS). The first solve > (after assembly which is super fast) takes a few mins (for ~1 > million unknowns on 12/24 cores) but from then on only a few > seconds for each subsequent solve for each time step. > > > > Perhaps symbolic factorization in MUMPS is all serial? > > > > Yes, it is. > > I missed this. I was just assuming a PETSc LU. Yes, I have no > idea of relative time of symbolic and numeric for those other > packages. > > Barry > > > > Matt > > > > Like the OP I often do multiple runs on the same problem but I > dont know if MUMPS or any other direct solver can save the > symbolic factorization info to a file that perhaps can be utilized > in subsequent reruns to avoid the costly "first solves". > > > > Tabrez > > > > > > On 01/28/2014 04:04 PM, Barry Smith wrote: > > On Jan 28, 2014, at 1:36 PM, David Liu > wrote: > > > > Hi, I'm writing an application that solves a sparse matrix many > times using Pastix. I notice that the first solves takes a very > long time, > > Is it the first "solve" or the first time you put values into > that matrix that "takes a long time"? If you are not properly > preallocating the matrix then the initial setting of values will > be slow and waste memory. See > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html > > > > The symbolic factorization is usually much faster than a > numeric factorization so that is not the cause of the slow "first > solve". > > > > Barry > > > > > > > > while the subsequent solves are very fast. I don't fully > understand what's going on behind the curtains, but I'm guessing > it's because the very first solve has to read in the non-zero > structure for the LU factorization, while the subsequent solves > are faster because the nonzero structure doesn't change. > > > > My question is, is there any way to save the information > obtained from the very first solve, so that the next time I run > the application, the very first solve can be fast too (provided > that I still have the same nonzero structure)? > > > > > > -- > > No one trusts a model except the one who wrote it; Everyone > trusts an observation except the one who made it- Harlow Shapley > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to > which their experiments lead. > > -- Norbert Wiener > > -- No one trusts a model except the one who wrote it; Everyone trusts an observation except the one who made it- Harlow Shapley -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- Reading input ... Partitioning mesh ... Reading mesh data ... Forming [K] ... Forming RHS ... Setting up solver ... Solving ... Entering DMUMPS driver with JOB, N, NZ = 1 107811 0 DMUMPS 4.10.0 L U Solver for unsymmetric matrices Type of parallelism: Working host ****** ANALYSIS STEP ******** ** Max-trans not allowed because matrix is distributed ... Structural symmetry (in percent)= 100 Density: NBdense, Average, Median = 0 75 80 Ordering based on METIS A root of estimated size 4851 has been selected for Scalapack. Leaving analysis phase with ... INFOG(1) = 0 INFOG(2) = 0 -- (20) Number of entries in factors (estim.) = 201990159 -- (3) Storage of factors (REAL, estimated) = 202148895 -- (4) Storage of factors (INT , estimated) = 2404034 -- (5) Maximum frontal size (estimated) = 4851 -- (6) Number of nodes in the tree = 3963 -- (32) Type of analysis effectively used = 1 -- (7) Ordering option effectively used = 5 ICNTL(6) Maximum transversal option = 0 ICNTL(7) Pivot order option = 7 Percentage of memory relaxation (effective) = 35 Number of level 2 nodes = 24 Number of split nodes = 2 RINFOG(1) Operations during elimination (estim)= 4.395D+11 Distributed matrix entry format (ICNTL(18)) = 3 ** Rank of proc needing largest memory in IC facto : 11 ** Estimated corresponding MBYTES for IC facto : 325 ** Estimated avg. MBYTES per work. proc at facto (IC) : 286 ** TOTAL space in MBYTES for IC factorization : 4584 ** Rank of proc needing largest memory for OOC facto : 10 ** Estimated corresponding MBYTES for OOC facto : 254 ** Estimated avg. MBYTES per work. proc at facto (OOC) : 214 ** TOTAL space in MBYTES for OOC factorization : 3424 Entering DMUMPS driver with JOB, N, NZ = 2 107811 8214057 ****** FACTORIZATION STEP ******** GLOBAL STATISTICS PRIOR NUMERICAL FACTORIZATION ... NUMBER OF WORKING PROCESSES = 16 OUT-OF-CORE OPTION (ICNTL(22)) = 0 REAL SPACE FOR FACTORS = 202148895 INTEGER SPACE FOR FACTORS = 2404034 MAXIMUM FRONTAL SIZE (ESTIMATED) = 4851 NUMBER OF NODES IN THE TREE = 3963 Convergence error after scaling for ONE-NORM (option 7/8) = 0.63D-01 Maximum effective relaxed size of S = 28811533 Average effective relaxed size of S = 23980595 REDISTRIB: TOTAL DATA LOCAL/SENT = 285226 11316386 GLOBAL TIME FOR MATRIX DISTRIBUTION = 0.1374 ** Memory relaxation parameter ( ICNTL(14) ) : 35 ** Rank of processor needing largest memory in facto : 11 ** Space in MBYTES used by this processor for facto : 325 ** Avg. Space in MBYTES per working proc during facto : 286 ELAPSED TIME FOR FACTORIZATION = 18.6224 Maximum effective space used in S (KEEP8(67) = 19890302 Average effective space used in S (KEEP8(67) = 17657389 ** EFF Min: Rank of processor needing largest memory : 11 ** EFF Min: Space in MBYTES used by this processor : 254 ** EFF Min: Avg. Space in MBYTES per working proc : 235 GLOBAL STATISTICS RINFOG(2) OPERATIONS IN NODE ASSEMBLY = 5.463D+08 ------(3) OPERATIONS IN NODE ELIMINATION= 4.395D+11 INFOG (9) REAL SPACE FOR FACTORS = 201990159 INFOG(10) INTEGER SPACE FOR FACTORS = 2402463 INFOG(11) MAXIMUM FRONT SIZE = 4851 INFOG(29) NUMBER OF ENTRIES IN FACTORS = 178457958 INFOG(12) NB OF OFF DIAGONAL PIVOTS = 0 INFOG(13) NUMBER OF DELAYED PIVOTS = 0 INFOG(14) NUMBER OF MEMORY COMPRESS = 16 KEEP8(108) Extra copies IP stacking = 0 Entering DMUMPS driver with JOB, N, NZ = 3 107811 8214057 ****** SOLVE & CHECK STEP ******** STATISTICS PRIOR SOLVE PHASE ........... NUMBER OF RIGHT-HAND-SIDES = 1 BLOCKING FACTOR FOR MULTIPLE RHS = 1 ICNTL (9) = 1 --- (10) = 0 --- (11) = 0 --- (20) = 0 --- (21) = 1 --- (30) = 0 ** Rank of processor needing largest memory in solve : 11 ** Space in MBYTES used by this processor for solve : 238 ** Avg. Space in MBYTES per working proc during solve : 199 Entering DMUMPS driver with JOB, N, NZ = 3 107811 8214057 ****** SOLVE & CHECK STEP ******** STATISTICS PRIOR SOLVE PHASE ........... NUMBER OF RIGHT-HAND-SIDES = 1 BLOCKING FACTOR FOR MULTIPLE RHS = 1 ICNTL (9) = 1 --- (10) = 0 --- (11) = 0 --- (20) = 0 --- (21) = 1 --- (30) = 0 ** Rank of processor needing largest memory in solve : 11 ** Space in MBYTES used by this processor for solve : 238 ** Avg. Space in MBYTES per working proc during solve : 199 Recovering stress ... Entering DMUMPS driver with JOB, N, NZ = -2 107811 8214057 Cleaning up ... Finished ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- ./defmod on a arch-linux2-c-opt named aci-048.chtc.wisc.edu with 16 processors, by stali2 Wed Jan 29 10:53:09 2014 Using Petsc Release Version 3.4.1, Jun, 10, 2013 Max Max/Min Avg Total Time (sec): 2.091e+01 1.00000 2.091e+01 Objects: 3.900e+01 1.00000 3.900e+01 Flops: 1.144e+06 1.05187 1.114e+06 1.783e+07 Flops/sec: 5.471e+04 1.05187 5.330e+04 8.528e+05 MPI Messages: 1.300e+02 1.83099 1.009e+02 1.614e+03 MPI Message Lengths: 2.359e+06 1.90899 1.769e+04 2.855e+07 MPI Reductions: 5.800e+01 1.00000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 0: Main Stage: 2.0907e+01 100.0% 1.7830e+07 100.0% 1.614e+03 100.0% 1.769e+04 100.0% 5.700e+01 98.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flops: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent Avg. len: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %f - percent flops in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage VecMDot 1 1.0 1.1277e-04 7.1 1.35e+04 1.0 0.0e+00 0.0e+00 1.0e+00 0 1 0 0 2 0 1 0 0 2 1912 VecNorm 2 1.0 1.0610e-04 1.8 2.70e+04 1.0 0.0e+00 0.0e+00 2.0e+00 0 2 0 0 3 0 2 0 0 4 4065 VecScale 2 1.0 2.1935e-05 2.2 1.35e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 9830 VecCopy 1 1.0 2.7180e-05 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 5 1.0 3.4642e-0412.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 1 1.0 1.0967e-05 1.2 1.35e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 19661 VecMAXPY 2 1.0 2.1219e-05 1.1 2.70e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 20323 VecAssemblyBegin 1 1.0 2.7704e-04 8.9 0.00e+00 0.0 2.0e+00 1.8e+01 3.0e+00 0 0 0 0 5 0 0 0 0 5 0 VecAssemblyEnd 1 1.0 2.8610e-06 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecScatterBegin 6 1.0 6.3896e-04 3.8 0.00e+00 0.0 5.2e+02 6.1e+03 2.0e+00 0 0 32 11 3 0 0 32 11 4 0 VecScatterEnd 4 1.0 2.9111e-04 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 2 1.0 1.3494e-04 1.8 4.04e+04 1.0 0.0e+00 0.0e+00 2.0e+00 0 4 0 0 3 0 4 0 0 4 4794 MatMult 1 1.0 1.6370e-03 1.1 1.05e+06 1.1 1.3e+02 3.1e+03 0.0e+00 0 92 8 1 0 0 92 8 1 0 9970 MatSolve 2 1.0 9.7397e-02 1.0 0.00e+00 0.0 5.4e+02 5.5e+03 6.0e+00 0 0 34 10 10 0 0 34 10 11 0 MatLUFactorSym 1 1.0 1.2882e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 7.0e+00 6 0 0 0 12 6 0 0 0 12 0 MatLUFactorNum 1 1.0 1.8813e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 90 0 0 0 2 90 0 0 0 2 0 MatAssemblyBegin 1 1.0 3.2401e-02 8.6 0.00e+00 0.0 3.4e+02 7.3e+04 2.0e+00 0 0 21 86 3 0 0 21 86 4 0 MatAssemblyEnd 1 1.0 1.7039e-02 1.2 0.00e+00 0.0 2.6e+02 7.7e+02 9.0e+00 0 0 16 1 16 0 0 16 1 16 0 MatGetRowIJ 1 1.0 3.0994e-06 3.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetOrdering 1 1.0 1.5593e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 7 0 0 0 0 7 0 KSPGMRESOrthog 1 1.0 1.3494e-04 2.5 2.70e+04 1.0 0.0e+00 0.0e+00 1.0e+00 0 2 0 0 2 0 2 0 0 2 3196 KSPSetUp 1 1.0 9.6798e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 2.0205e+01 1.0 1.14e+06 1.1 6.8e+02 5.0e+03 2.9e+01 97100 42 12 50 97100 42 12 51 1 PCSetUp 1 1.0 2.0105e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+01 96 0 0 0 34 96 0 0 0 35 0 PCApply 2 1.0 9.7407e-02 1.0 0.00e+00 0.0 5.4e+02 5.5e+03 6.0e+00 0 0 34 10 10 0 0 34 10 11 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Vector 13 13 1395792 0 Vector Scatter 4 4 3792 0 Matrix 6 6 13990176 0 Index Set 13 13 188444 0 Krylov Solver 1 1 18360 0 Preconditioner 1 1 1096 0 Viewer 1 0 0 0 ======================================================================================================================== Average time to get PetscTime(): 9.53674e-08 Average time for MPI_Barrier(): 2.00272e-06 Average time for zero size MPI_Send(): 1.2517e-06 #PETSc Option Table entries: -f point.inp -log_summary -mat_mumps_icntl_4 1 -pc_factor_mat_solver_package mumps -pc_type lu #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure run at: Wed Jul 17 17:20:12 2013 Configure options: --with-mpi-dir=/usr/mpi/gcc/mvapich2-1.9 --with-cmake=1 --download-cmake=1 --with-metis==1 --download-metis=1 --with-parmetis=1 --download-parmetis=1 --with-scalapack=1 --download-scalapack=1 --with-mumps=1 --download-mumps=1 --with-debugging=0 --with-shared-libraries=0 --CFLAGS=-O2 --FFLAGS=-O2 ----------------------------------------- Libraries compiled on Wed Jul 17 17:20:12 2013 on aci-service-1.chtc.wisc.edu Machine characteristics: Linux-2.6.32-358.6.2.el6.x86_64-x86_64-with-redhat-6.3-Carbon Using PETSc directory: /home/stali2/petsc-3.4.1 Using PETSc arch: arch-linux2-c-opt ----------------------------------------- Using C compiler: /usr/mpi/gcc/mvapich2-1.9/bin/mpicc -O2 -O ${COPTFLAGS} ${CFLAGS} Using Fortran compiler: /usr/mpi/gcc/mvapich2-1.9/bin/mpif90 -O2 -O ${FOPTFLAGS} ${FFLAGS} ----------------------------------------- Using include paths: -I/home/stali2/petsc-3.4.1/arch-linux2-c-opt/include -I/home/stali2/petsc-3.4.1/include -I/home/stali2/petsc-3.4.1/include -I/home/stali2/petsc-3.4.1/arch-linux2-c-opt/include -I/usr/mpi/gcc/mvapich2-1.9/include ----------------------------------------- Using C linker: /usr/mpi/gcc/mvapich2-1.9/bin/mpicc Using Fortran linker: /usr/mpi/gcc/mvapich2-1.9/bin/mpif90 Using libraries: -Wl,-rpath,/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -L/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -lpetsc -Wl,-rpath,/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -L/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -lX11 -lparmetis -lmetis -lpthread -L/usr/mpi/gcc/mvapich2-1.9/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.6 -lmpichf90 -lgfortran -lm -lm -lm -lm -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrdmacm -libumad -libverbs -lrt -lnuma -lpthread -lgcc_s -ldl ----------------------------------------- -------------- next part -------------- Reading input ... Partitioning mesh ... Reading mesh data ... Forming [K] ... Forming RHS ... Setting up solver ... Solving ... Entering DMUMPS driver with JOB, N, NZ = 1 107811 0 DMUMPS 4.10.0 L U Solver for unsymmetric matrices Type of parallelism: Working host ****** ANALYSIS STEP ******** ** Max-trans not allowed because matrix is distributed Using ParMETIS for parallel ordering. Structual symmetry is:100% A root of estimated size 6878 has been selected for Scalapack. Leaving analysis phase with ... INFOG(1) = 0 INFOG(2) = 0 -- (20) Number of entries in factors (estim.) = 221871415 -- (3) Storage of factors (REAL, estimated) = 221946297 -- (4) Storage of factors (INT , estimated) = 2296827 -- (5) Maximum frontal size (estimated) = 6878 -- (6) Number of nodes in the tree = 3695 -- (32) Type of analysis effectively used = 2 -- (7) Ordering option effectively used = 2 ICNTL(6) Maximum transversal option = 0 ICNTL(7) Pivot order option = 7 Percentage of memory relaxation (effective) = 35 Number of level 2 nodes = 24 Number of split nodes = 0 RINFOG(1) Operations during elimination (estim)= 5.795D+11 Distributed matrix entry format (ICNTL(18)) = 3 ** Rank of proc needing largest memory in IC facto : 0 ** Estimated corresponding MBYTES for IC facto : 407 ** Estimated avg. MBYTES per work. proc at facto (IC) : 323 ** TOTAL space in MBYTES for IC factorization : 5170 ** Rank of proc needing largest memory for OOC facto : 0 ** Estimated corresponding MBYTES for OOC facto : 291 ** Estimated avg. MBYTES per work. proc at facto (OOC) : 247 ** TOTAL space in MBYTES for OOC factorization : 3955 Entering DMUMPS driver with JOB, N, NZ = 2 107811 8214057 ****** FACTORIZATION STEP ******** GLOBAL STATISTICS PRIOR NUMERICAL FACTORIZATION ... NUMBER OF WORKING PROCESSES = 16 OUT-OF-CORE OPTION (ICNTL(22)) = 0 REAL SPACE FOR FACTORS = 221946297 INTEGER SPACE FOR FACTORS = 2296827 MAXIMUM FRONTAL SIZE (ESTIMATED) = 6878 NUMBER OF NODES IN THE TREE = 3695 Convergence error after scaling for ONE-NORM (option 7/8) = 0.63D-01 Maximum effective relaxed size of S = 38287711 Average effective relaxed size of S = 28596634 REDISTRIB: TOTAL DATA LOCAL/SENT = 383440 11281292 GLOBAL TIME FOR MATRIX DISTRIBUTION = 0.1332 ** Memory relaxation parameter ( ICNTL(14) ) : 35 ** Rank of processor needing largest memory in facto : 0 ** Space in MBYTES used by this processor for facto : 407 ** Avg. Space in MBYTES per working proc during facto : 323 ELAPSED TIME FOR FACTORIZATION = 21.6514 Maximum effective space used in S (KEEP8(67) = 32912724 Average effective space used in S (KEEP8(67) = 21712976 ** EFF Min: Rank of processor needing largest memory : 0 ** EFF Min: Space in MBYTES used by this processor : 364 ** EFF Min: Avg. Space in MBYTES per working proc : 268 GLOBAL STATISTICS RINFOG(2) OPERATIONS IN NODE ASSEMBLY = 5.123D+08 ------(3) OPERATIONS IN NODE ELIMINATION= 5.795D+11 INFOG (9) REAL SPACE FOR FACTORS = 221871415 INFOG(10) INTEGER SPACE FOR FACTORS = 2294033 INFOG(11) MAXIMUM FRONT SIZE = 6878 INFOG(29) NUMBER OF ENTRIES IN FACTORS = 174564531 INFOG(12) NB OF OFF DIAGONAL PIVOTS = 0 INFOG(13) NUMBER OF DELAYED PIVOTS = 0 INFOG(14) NUMBER OF MEMORY COMPRESS = 15 KEEP8(108) Extra copies IP stacking = 0 Entering DMUMPS driver with JOB, N, NZ = 3 107811 8214057 ****** SOLVE & CHECK STEP ******** STATISTICS PRIOR SOLVE PHASE ........... NUMBER OF RIGHT-HAND-SIDES = 1 BLOCKING FACTOR FOR MULTIPLE RHS = 1 ICNTL (9) = 1 --- (10) = 0 --- (11) = 0 --- (20) = 0 --- (21) = 1 --- (30) = 0 ** Rank of processor needing largest memory in solve : 0 ** Space in MBYTES used by this processor for solve : 325 ** Avg. Space in MBYTES per working proc during solve : 236 Entering DMUMPS driver with JOB, N, NZ = 3 107811 8214057 ****** SOLVE & CHECK STEP ******** STATISTICS PRIOR SOLVE PHASE ........... NUMBER OF RIGHT-HAND-SIDES = 1 BLOCKING FACTOR FOR MULTIPLE RHS = 1 ICNTL (9) = 1 --- (10) = 0 --- (11) = 0 --- (20) = 0 --- (21) = 1 --- (30) = 0 ** Rank of processor needing largest memory in solve : 0 ** Space in MBYTES used by this processor for solve : 325 ** Avg. Space in MBYTES per working proc during solve : 236 Recovering stress ... Entering DMUMPS driver with JOB, N, NZ = -2 107811 8214057 Cleaning up ... Finished ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- ./defmod on a arch-linux2-c-opt named aci-048.chtc.wisc.edu with 16 processors, by stali2 Wed Jan 29 10:55:09 2014 Using Petsc Release Version 3.4.1, Jun, 10, 2013 Max Max/Min Avg Total Time (sec): 2.455e+01 1.00000 2.455e+01 Objects: 3.900e+01 1.00000 3.900e+01 Flops: 1.144e+06 1.05187 1.114e+06 1.783e+07 Flops/sec: 4.660e+04 1.05187 4.540e+04 7.264e+05 MPI Messages: 1.240e+02 2.03279 9.762e+01 1.562e+03 MPI Message Lengths: 2.372e+06 1.81175 1.828e+04 2.855e+07 MPI Reductions: 5.800e+01 1.00000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 0: Main Stage: 2.4547e+01 100.0% 1.7830e+07 100.0% 1.562e+03 100.0% 1.828e+04 100.0% 5.700e+01 98.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flops: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent Avg. len: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %f - percent flops in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage VecMDot 1 1.0 8.5831e-05 5.1 1.35e+04 1.0 0.0e+00 0.0e+00 1.0e+00 0 1 0 0 2 0 1 0 0 2 2512 VecNorm 2 1.0 1.5712e-04 2.7 2.70e+04 1.0 0.0e+00 0.0e+00 2.0e+00 0 2 0 0 3 0 2 0 0 4 2745 VecScale 2 1.0 1.4067e-05 1.4 1.35e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 15329 VecCopy 1 1.0 3.6001e-05 3.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 5 1.0 3.3236e-0411.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 1 1.0 1.2159e-05 1.3 1.35e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 17733 VecMAXPY 2 1.0 1.9789e-05 1.1 2.70e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 21792 VecAssemblyBegin 1 1.0 3.8505e-0412.8 0.00e+00 0.0 2.0e+00 1.8e+01 3.0e+00 0 0 0 0 5 0 0 0 0 5 0 VecAssemblyEnd 1 1.0 2.8610e-06 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecScatterBegin 6 1.0 5.0306e-04 3.8 0.00e+00 0.0 4.9e+02 6.5e+03 2.0e+00 0 0 31 11 3 0 0 31 11 4 0 VecScatterEnd 4 1.0 2.8682e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 2 1.0 1.7118e-04 2.3 4.04e+04 1.0 0.0e+00 0.0e+00 2.0e+00 0 4 0 0 3 0 4 0 0 4 3779 MatMult 1 1.0 1.6229e-03 1.1 1.05e+06 1.1 1.3e+02 3.1e+03 0.0e+00 0 92 8 1 0 0 92 8 1 0 10056 MatSolve 2 1.0 1.0811e-01 1.0 0.00e+00 0.0 4.9e+02 6.1e+03 6.0e+00 0 0 31 10 10 0 0 31 10 11 0 MatLUFactorSym 1 1.0 1.8920e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 7.0e+00 8 0 0 0 12 8 0 0 0 12 0 MatLUFactorNum 1 1.0 2.1836e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 89 0 0 0 2 89 0 0 0 2 0 MatAssemblyBegin 1 1.0 3.2708e-02 7.5 0.00e+00 0.0 3.4e+02 7.3e+04 2.0e+00 0 0 22 86 3 0 0 22 86 4 0 MatAssemblyEnd 1 1.0 1.6633e-02 1.2 0.00e+00 0.0 2.6e+02 7.7e+02 9.0e+00 0 0 17 1 16 0 0 17 1 16 0 MatGetRowIJ 1 1.0 8.1062e-06 6.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetOrdering 1 1.0 1.5593e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 7 0 0 0 0 7 0 KSPGMRESOrthog 1 1.0 1.3590e-04 2.4 2.70e+04 1.0 0.0e+00 0.0e+00 1.0e+00 0 2 0 0 2 0 2 0 0 2 3173 KSPSetUp 1 1.0 9.8944e-05 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 2.3841e+01 1.0 1.14e+06 1.1 6.2e+02 5.4e+03 2.9e+01 97100 40 12 50 97100 40 12 51 1 PCSetUp 1 1.0 2.3731e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+01 97 0 0 0 34 97 0 0 0 35 0 PCApply 2 1.0 1.0812e-01 1.0 0.00e+00 0.0 4.9e+02 6.1e+03 6.0e+00 0 0 31 10 10 0 0 31 10 11 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Vector 13 13 1395792 0 Vector Scatter 4 4 3792 0 Matrix 6 6 13990176 0 Index Set 13 13 218932 0 Krylov Solver 1 1 18360 0 Preconditioner 1 1 1096 0 Viewer 1 0 0 0 ======================================================================================================================== Average time to get PetscTime(): 0 Average time for MPI_Barrier(): 2.19345e-06 Average time for zero size MPI_Send(): 1.2517e-06 #PETSc Option Table entries: -f point.inp -log_summary -mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2 -mat_mumps_icntl_4 1 -pc_factor_mat_solver_package mumps -pc_type lu #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure run at: Wed Jul 17 17:20:12 2013 Configure options: --with-mpi-dir=/usr/mpi/gcc/mvapich2-1.9 --with-cmake=1 --download-cmake=1 --with-metis==1 --download-metis=1 --with-parmetis=1 --download-parmetis=1 --with-scalapack=1 --download-scalapack=1 --with-mumps=1 --download-mumps=1 --with-debugging=0 --with-shared-libraries=0 --CFLAGS=-O2 --FFLAGS=-O2 ----------------------------------------- Libraries compiled on Wed Jul 17 17:20:12 2013 on aci-service-1.chtc.wisc.edu Machine characteristics: Linux-2.6.32-358.6.2.el6.x86_64-x86_64-with-redhat-6.3-Carbon Using PETSc directory: /home/stali2/petsc-3.4.1 Using PETSc arch: arch-linux2-c-opt ----------------------------------------- Using C compiler: /usr/mpi/gcc/mvapich2-1.9/bin/mpicc -O2 -O ${COPTFLAGS} ${CFLAGS} Using Fortran compiler: /usr/mpi/gcc/mvapich2-1.9/bin/mpif90 -O2 -O ${FOPTFLAGS} ${FFLAGS} ----------------------------------------- Using include paths: -I/home/stali2/petsc-3.4.1/arch-linux2-c-opt/include -I/home/stali2/petsc-3.4.1/include -I/home/stali2/petsc-3.4.1/include -I/home/stali2/petsc-3.4.1/arch-linux2-c-opt/include -I/usr/mpi/gcc/mvapich2-1.9/include ----------------------------------------- Using C linker: /usr/mpi/gcc/mvapich2-1.9/bin/mpicc Using Fortran linker: /usr/mpi/gcc/mvapich2-1.9/bin/mpif90 Using libraries: -Wl,-rpath,/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -L/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -lpetsc -Wl,-rpath,/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -L/home/stali2/petsc-3.4.1/arch-linux2-c-opt/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -lX11 -lparmetis -lmetis -lpthread -L/usr/mpi/gcc/mvapich2-1.9/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.6 -lmpichf90 -lgfortran -lm -lm -lm -lm -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrdmacm -libumad -libverbs -lrt -lnuma -lpthread -lgcc_s -ldl ----------------------------------------- From knepley at gmail.com Wed Jan 29 11:24:25 2014 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 29 Jan 2014 11:24:25 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> Message-ID: On Wed, Jan 29, 2014 at 10:48 AM, David Liu wrote: > Sure thing. Here is a run where the first solve took about 34s, while the > second solve took about 2 s. > Comments below: > =========================== > > > ************************************************************************************************************************ > *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r > -fCourier9' to print this document *** > > ************************************************************************************************************************ > ---------------------------------------------- PETSc Performance Summary: > ---------------------------------------------- > ./SaltOut on a REAL named nid00407 with 12 processors, by Unknown Wed Jan > 29 11:33:44 2014 > Using Petsc Release Version 3.3.0, Patch 4, Fri Oct 26 10:46:51 CDT 2012 > Max Max/Min Avg Total > Time (sec): 3.979e+01 1.00000 3.979e+01 > Objects: 1.070e+02 1.00000 1.070e+02 > Flops: 2.431e+07 1.75268 1.478e+07 1.773e+08 > Flops/sec: 6.108e+05 1.75268 3.714e+05 4.456e+06 > MPI Messages: 4.845e+02 1.53081 3.612e+02 4.335e+03 > MPI Message Lengths: 1.770e+07 1.45602 3.721e+04 1.613e+08 > MPI Reductions: 2.810e+02 1.00000 > Flop counting convention: 1 flop = 1 real number operation of type > (multiply/divide/add/subtract) > e.g., VecAXPY() for real vectors of length N > --> 2N flops > and VecAXPY() for complex vectors of length N > --> 8N flops > Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages > --- -- Message Lengths -- -- Reductions -- > Avg %Total Avg %Total counts > %Total Avg %Total counts %Total > 0: Main Stage: 3.9795e+01 100.0% 1.7734e+08 100.0% 4.335e+03 > 100.0% 3.721e+04 100.0% 2.800e+02 99.6% > > ------------------------------------------------------------------------------------------------------------------------ > See the 'Profiling' chapter of the users' manual for details on > interpreting output. > Phase summary info: > Count: number of times phase was executed > Time and Flops: Max - maximum over all processors > Ratio - ratio of maximum to minimum over all processors > Mess: number of messages sent > Avg. len: average message length > Reduct: number of global reductions > Global: entire computation > Stage: stages of a computation. Set stages with PetscLogStagePush() and > PetscLogStagePop(). > %T - percent time in this phase %f - percent flops in this > phase > %M - percent messages in this phase %L - percent message lengths > in this phase > %R - percent reductions in this phase > Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time > over all processors) > > ------------------------------------------------------------------------------------------------------------------------ > Event Count Time (sec) Flops > --- Global --- --- Stage --- Total > Max Ratio Max Ratio Max Ratio Mess Avg len > Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s > > ------------------------------------------------------------------------------------------------------------------------ > --- Event Stage 0: Main Stage > VecView 1 1.0 1.6816e+0011.5 0.00e+00 0.0 1.1e+01 1.7e+05 > 0.0e+00 2 0 0 1 0 2 0 0 1 0 0 > VecMDot 6 1.0 2.8601e-03 1.3 5.62e+05 1.0 0.0e+00 0.0e+00 > 6.0e+00 0 4 0 0 2 0 4 0 0 2 2356 > VecNorm 12 1.0 1.5430e-03 1.3 5.18e+05 1.0 0.0e+00 0.0e+00 > 1.2e+01 0 4 0 0 4 0 4 0 0 4 4032 > VecScale 14 1.0 2.8896e-04 1.2 3.02e+05 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 2 0 0 0 0 2 0 0 0 12558 > VecCopy 26 1.0 3.6035e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecSet 52 1.0 3.0789e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecAXPY 6 1.0 5.8293e-04 1.2 2.59e+05 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 2 0 0 0 0 2 0 0 0 5336 > VecMAXPY 8 1.0 9.5987e-04 1.2 8.21e+05 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 6 0 0 0 0 6 0 0 0 10261 > VecAssemblyBegin 41 1.0 7.6625e-0131.1 0.00e+00 0.0 6.6e+01 4.9e+04 > 1.2e+02 2 0 2 2 44 2 0 2 2 44 0 > VecAssemblyEnd 41 1.0 4.5586e-04 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecPointwiseMult 1 1.0 2.1911e-04 1.2 2.16e+04 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 1183 > VecScatterBegin 60 1.0 2.2238e-02 1.2 0.00e+00 0.0 3.5e+03 4.2e+04 > 0.0e+00 0 0 81 92 0 0 0 81 92 0 0 > VecScatterEnd 60 1.0 6.2252e-02 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecNormalize 8 1.0 1.0526e-03 1.4 5.18e+05 1.0 0.0e+00 0.0e+00 > 8.0e+00 0 4 0 0 3 0 4 0 0 3 5910 > MatMult 10 1.0 1.3628e-01 1.3 2.18e+07 1.9 1.3e+03 8.7e+04 > 0.0e+00 0 83 30 72 0 0 83 30 72 0 1083 > MatSolve 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 > MatLUFactorSym 1 1.0 4.4394e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatLUFactorNum 1 1.0 3.3686e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 85 0 0 0 0 85 0 0 0 0 0 > 1) All the time is in the numerical factorization 2) You only factor it once, so the next solve just applies the factors. If you wanted it to factor again, you have to call KSPSetOperators(..., SAME_NONZERO_PATTERN) Matt > MatAssemblyBegin 7 1.0 4.4827e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 > 1.4e+01 0 0 0 0 5 0 0 0 0 5 0 > MatAssemblyEnd 7 1.0 2.1890e-01 1.1 0.00e+00 0.0 2.6e+02 2.2e+04 > 8.0e+00 1 0 6 4 3 1 0 6 4 3 0 > KSPGMRESOrthog 6 1.0 3.5851e-03 1.2 1.12e+06 1.0 0.0e+00 0.0e+00 > 6.0e+00 0 8 0 0 2 0 8 0 0 2 3760 > KSPSetUp 1 1.0 8.0609e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSolve 2 1.0 3.6561e+01 1.0 1.51e+07 1.7 7.9e+02 8.7e+04 > 2.2e+01 92 63 18 43 8 92 63 18 43 8 3 > PCSetUp 1 1.0 3.3688e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 8.0e+00 85 0 0 0 3 85 0 0 0 3 0 > PCApply 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 > > ------------------------------------------------------------------------------------------------------------------------ > Memory usage is given in bytes: > Object Type Creations Destructions Memory Descendants' Mem. > Reports information only for process 0. > --- Event Stage 0: Main Stage > Vector 50 50 6210712 0 > Vector Scatter 15 15 15540 0 > Index Set 32 32 465324 0 > Matrix 6 6 21032760 0 > Krylov Solver 1 1 18288 0 > Preconditioner 1 1 936 0 > Viewer 2 1 712 0 > > ======================================================================================================================== > Average time to get PetscTime(): 9.53674e-08 > Average time for MPI_Barrier(): 5.38826e-06 > Average time for zero size MPI_Send(): 9.57648e-06 > #PETSc Option Table entries: > -Dmax 0.01 > -LowerPML 0 > -Mx 72 > -My 60 > -Mz 4 > -Nc 3 > -Npmlx 0 > -Npmly 0 > -Npmlz 3 > -Nx 72 > -Ny 60 > -Nz 10 > -dD 0.01 > -epsfile eps3dhi.txt > -fproffile fprof3dhi.txt > -gamma 2.0 > -hx 0.0625 > -hy 0.061858957413174 > -hz 0.2 > -in0 pass > -log_summary > -norm 0.01 > -out0 above > -pc_factor_mat_solver_package superlu_dist > -pc_type lu > -printnewton 1 > -wa 1.5 > #End of PETSc Option Table entries > Compiled without FORTRAN kernels > Compiled with full precision matrices (default) > sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 > sizeof(PetscScalar) 8 sizeof(PetscInt) 4 > Configure run at: Wed Apr 17 13:30:40 2013 > Configure options: --prefix=/sw/xt/petsc/3.3/cnl3.1_pgi11.9.0 > --PETSC_ARCH=REAL --known-level1-dcache-assoc=2 > --known-level1-dcache-size=65536 --known-level1-dcache-linesize=64 > --with-cc=cc --with-fc=ftn --with-cxx=CC --with-fortran > --with-fortran-interfaces=1 --with-single-library=1 > --with-shared-libraries=0 --with-scalar-type=real --with-debugging=0 > --known-mpi-shared-libraries=0 --with-clib-autodetect=0 > --with-fortranlib-autodetect=0 --known-memcmp-ok=1 --COPTFLAGS=-fast > -Mipa=fast --FOPTFLAGS=-fast -Mipa=fast > --with-blas-lapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a > --with-scalapack=1 > --with-scalapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a > --with-scalapack-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include > --with-ptscotch=1 --download-ptscotch=yes --with-blacs=1 > --with-blacs-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a > --with-blacs-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include > --with-superlu_dist=1 --download-superlu_dist=yes --with-metis=1 > --download-metis=yes --with-parmetis=1 --download-parmetis=yes > --with-mumps=1 --download-mumps=yes --with-hypre=1 --download-hypre > --with-fftw=1 --with-fftw-dir=/opt/fftw/3.3.0.0/x86_64 --with-hdf5=1 > --with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.6/pgi/109 > ----------------------------------------- > Libraries compiled on Wed Apr 17 13:30:40 2013 on krakenpf3 > Machine characteristics: Linux-2.6.27.48-0.12.1 > _1.0301.5943-cray_ss_s-x86_64-with-SuSE-11-x86_64 > Using PETSc directory: > /nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4 > Using PETSc arch: REAL > ----------------------------------------- > Using C compiler: cc -fast ${COPTFLAGS} ${CFLAGS} > Using Fortran compiler: ftn -fast ${FOPTFLAGS} ${FFLAGS} > ----------------------------------------- > Using include paths: > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include > -I/opt/fftw/3.3.0.0/x86_64/include-I/opt/cray/hdf5-parallel/1.8.6/pgi/109/include > -I/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/include > -I/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/include > -I/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/include > -I/opt/xt-libsci/11.0.06/pgi/109/istanbul/include -I/usr/include/alps > ----------------------------------------- > Using C linker: cc > Using Fortran linker: ftn > Using libraries: > -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -lpetsc > -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -lsuperlu_dist_3.1 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common > -lpord -lparmetis -lmetis -lptesmumps -lptscotch -lptscotcherr > -Wl,-rpath,/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib > -L/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -lsci_pgi -lsci_pgi -lpthread > -Wl,-rpath,/opt/fftw/3.3.0.0/x86_64/lib -L/opt/fftw/3.3.0.0/x86_64/lib-lfftw3_mpi -lfftw3 -lHYPRE > -L/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/lib64 > -L/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/lib64 > -L/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/lib > -L/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -L/usr/lib/alps > -L/opt/pgi/11.9.0/linux86-64/11.9/lib > -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -L/opt/cray/atp/1.4.1/lib > -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi > -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi > -lportals -lalpslli -lalpsutil -lpthread > -Wl,-rpath,/opt/pgi/11.9.0/linux86-64/11.9/lib -lzceh -lgcc_eh -lstdmpz > -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc > -lpgc -lsci_pgi -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib > -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -ldl -lAtpSigHandler > -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp > -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals > -lalpslli -lalpsutil -lpthread -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp > -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lm > -lz -lz -ldl > ----------------------------------------- > > > > > On Tue, Jan 28, 2014 at 6:34 PM, Barry Smith wrote: > >> >> Ok then use -log_summary and put the first solve in a separate stage >> (see PetscStageRegister()) and send the results of a run back demonstrating >> the slow first solver and we may be able to see what the story is. >> >> Barry >> >> On Jan 28, 2014, at 5:23 PM, David Liu wrote: >> >> > wow that is news to me. I always assumed that this is normal. >> > >> > I'm pretty certain it's not the preallocation. I'm using MatCreateMPI, >> and to my knowledge I wouldn't even be able to set the values without >> crashing if I didn't preallocate. (If I'm not mistaken, the setting values >> slowly without preallocating is only possible if you create the Mat using >> MatCreate + MatSetup). >> > >> > Also, I'm certain that the time is taken on the first solve, not the >> setting of values, because I use the matrix in a MatMult first to get the >> RHS before solving, and the MatMult happens before the long first solve. >> > >> > >> > On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith >> wrote: >> > >> > On Jan 28, 2014, at 1:36 PM, David Liu wrote: >> > >> > > Hi, I'm writing an application that solves a sparse matrix many times >> using Pastix. I notice that the first solves takes a very long time, >> > >> > Is it the first "solve" or the first time you put values into that >> matrix that "takes a long time"? If you are not properly preallocating the >> matrix then the initial setting of values will be slow and waste memory. >> See >> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html >> > >> > The symbolic factorization is usually much faster than a numeric >> factorization so that is not the cause of the slow "first solve". >> > >> > Barry >> > >> > >> > >> > > while the subsequent solves are very fast. I don't fully understand >> what's going on behind the curtains, but I'm guessing it's because the very >> first solve has to read in the non-zero structure for the LU factorization, >> while the subsequent solves are faster because the nonzero structure >> doesn't change. >> > > >> > > My question is, is there any way to save the information obtained >> from the very first solve, so that the next time I run the application, the >> very first solve can be fast too (provided that I still have the same >> nonzero structure)? >> > >> > >> >> > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From hzhang at mcs.anl.gov Wed Jan 29 11:30:10 2014 From: hzhang at mcs.anl.gov (Hong Zhang) Date: Wed, 29 Jan 2014 11:30:10 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> Message-ID: David, The 1st solve calls LU factorization once which took 3.3686e+01 sec. The remaining solves do not call LU factorization at all, thus fast. > MatSolve 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 > MatLUFactorSym 1 1.0 4.4394e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatLUFactorNum 1 1.0 3.3686e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 85 0 0 0 0 85 0 0 0 0 0 > For petsc/Superlu_dist interface, MatLUFactorNum actually includes time for MatLUFactorSym because Superlu_dist's API design., i.e., 3.3686e+01 includes time spent on MatLUFactorSym. Can you send us '-log_summary' from mumps? Hong > MatAssemblyBegin 7 1.0 4.4827e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 > 1.4e+01 0 0 0 0 5 0 0 0 0 5 0 > MatAssemblyEnd 7 1.0 2.1890e-01 1.1 0.00e+00 0.0 2.6e+02 2.2e+04 > 8.0e+00 1 0 6 4 3 1 0 6 4 3 0 > KSPGMRESOrthog 6 1.0 3.5851e-03 1.2 1.12e+06 1.0 0.0e+00 0.0e+00 > 6.0e+00 0 8 0 0 2 0 8 0 0 2 3760 > KSPSetUp 1 1.0 8.0609e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSolve 2 1.0 3.6561e+01 1.0 1.51e+07 1.7 7.9e+02 8.7e+04 > 2.2e+01 92 63 18 43 8 92 63 18 43 8 3 > PCSetUp 1 1.0 3.3688e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 8.0e+00 85 0 0 0 3 85 0 0 0 3 0 > PCApply 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 > > ------------------------------------------------------------------------------------------------------------------------ > Memory usage is given in bytes: > Object Type Creations Destructions Memory Descendants' Mem. > Reports information only for process 0. > --- Event Stage 0: Main Stage > Vector 50 50 6210712 0 > Vector Scatter 15 15 15540 0 > Index Set 32 32 465324 0 > Matrix 6 6 21032760 0 > Krylov Solver 1 1 18288 0 > Preconditioner 1 1 936 0 > Viewer 2 1 712 0 > > ======================================================================================================================== > Average time to get PetscTime(): 9.53674e-08 > Average time for MPI_Barrier(): 5.38826e-06 > Average time for zero size MPI_Send(): 9.57648e-06 > #PETSc Option Table entries: > -Dmax 0.01 > -LowerPML 0 > -Mx 72 > -My 60 > -Mz 4 > -Nc 3 > -Npmlx 0 > -Npmly 0 > -Npmlz 3 > -Nx 72 > -Ny 60 > -Nz 10 > -dD 0.01 > -epsfile eps3dhi.txt > -fproffile fprof3dhi.txt > -gamma 2.0 > -hx 0.0625 > -hy 0.061858957413174 > -hz 0.2 > -in0 pass > -log_summary > -norm 0.01 > -out0 above > -pc_factor_mat_solver_package superlu_dist > -pc_type lu > -printnewton 1 > -wa 1.5 > #End of PETSc Option Table entries > Compiled without FORTRAN kernels > Compiled with full precision matrices (default) > sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 > sizeof(PetscScalar) 8 sizeof(PetscInt) 4 > Configure run at: Wed Apr 17 13:30:40 2013 > Configure options: --prefix=/sw/xt/petsc/3.3/cnl3.1_pgi11.9.0 > --PETSC_ARCH=REAL --known-level1-dcache-assoc=2 > --known-level1-dcache-size=65536 --known-level1-dcache-linesize=64 > --with-cc=cc --with-fc=ftn --with-cxx=CC --with-fortran > --with-fortran-interfaces=1 --with-single-library=1 > --with-shared-libraries=0 --with-scalar-type=real --with-debugging=0 > --known-mpi-shared-libraries=0 --with-clib-autodetect=0 > --with-fortranlib-autodetect=0 --known-memcmp-ok=1 --COPTFLAGS=-fast > -Mipa=fast --FOPTFLAGS=-fast -Mipa=fast > --with-blas-lapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a > --with-scalapack=1 > --with-scalapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a > --with-scalapack-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include > --with-ptscotch=1 --download-ptscotch=yes --with-blacs=1 > --with-blacs-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a > --with-blacs-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include > --with-superlu_dist=1 --download-superlu_dist=yes --with-metis=1 > --download-metis=yes --with-parmetis=1 --download-parmetis=yes > --with-mumps=1 --download-mumps=yes --with-hypre=1 --download-hypre > --with-fftw=1 --with-fftw-dir=/opt/fftw/3.3.0.0/x86_64 --with-hdf5=1 > --with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.6/pgi/109 > ----------------------------------------- > Libraries compiled on Wed Apr 17 13:30:40 2013 on krakenpf3 > Machine characteristics: Linux-2.6.27.48-0.12.1 > _1.0301.5943-cray_ss_s-x86_64-with-SuSE-11-x86_64 > Using PETSc directory: > /nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4 > Using PETSc arch: REAL > ----------------------------------------- > Using C compiler: cc -fast ${COPTFLAGS} ${CFLAGS} > Using Fortran compiler: ftn -fast ${FOPTFLAGS} ${FFLAGS} > ----------------------------------------- > Using include paths: > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include > -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include > -I/opt/fftw/3.3.0.0/x86_64/include-I/opt/cray/hdf5-parallel/1.8.6/pgi/109/include > -I/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/include > -I/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/include > -I/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/include > -I/opt/xt-libsci/11.0.06/pgi/109/istanbul/include -I/usr/include/alps > ----------------------------------------- > Using C linker: cc > Using Fortran linker: ftn > Using libraries: > -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -lpetsc > -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib > -lsuperlu_dist_3.1 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common > -lpord -lparmetis -lmetis -lptesmumps -lptscotch -lptscotcherr > -Wl,-rpath,/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib > -L/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -lsci_pgi -lsci_pgi -lpthread > -Wl,-rpath,/opt/fftw/3.3.0.0/x86_64/lib -L/opt/fftw/3.3.0.0/x86_64/lib-lfftw3_mpi -lfftw3 -lHYPRE > -L/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/lib64 > -L/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/lib64 > -L/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/lib > -L/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -L/usr/lib/alps > -L/opt/pgi/11.9.0/linux86-64/11.9/lib > -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -L/opt/cray/atp/1.4.1/lib > -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi > -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi > -lportals -lalpslli -lalpsutil -lpthread > -Wl,-rpath,/opt/pgi/11.9.0/linux86-64/11.9/lib -lzceh -lgcc_eh -lstdmpz > -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc > -lpgc -lsci_pgi -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib > -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -ldl -lAtpSigHandler > -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp > -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals > -lalpslli -lalpsutil -lpthread -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp > -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lm > -lz -lz -ldl > ----------------------------------------- > > > > > On Tue, Jan 28, 2014 at 6:34 PM, Barry Smith wrote: > >> >> Ok then use -log_summary and put the first solve in a separate stage >> (see PetscStageRegister()) and send the results of a run back demonstrating >> the slow first solver and we may be able to see what the story is. >> >> Barry >> >> On Jan 28, 2014, at 5:23 PM, David Liu wrote: >> >> > wow that is news to me. I always assumed that this is normal. >> > >> > I'm pretty certain it's not the preallocation. I'm using MatCreateMPI, >> and to my knowledge I wouldn't even be able to set the values without >> crashing if I didn't preallocate. (If I'm not mistaken, the setting values >> slowly without preallocating is only possible if you create the Mat using >> MatCreate + MatSetup). >> > >> > Also, I'm certain that the time is taken on the first solve, not the >> setting of values, because I use the matrix in a MatMult first to get the >> RHS before solving, and the MatMult happens before the long first solve. >> > >> > >> > On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith >> wrote: >> > >> > On Jan 28, 2014, at 1:36 PM, David Liu wrote: >> > >> > > Hi, I'm writing an application that solves a sparse matrix many times >> using Pastix. I notice that the first solves takes a very long time, >> > >> > Is it the first "solve" or the first time you put values into that >> matrix that "takes a long time"? If you are not properly preallocating the >> matrix then the initial setting of values will be slow and waste memory. >> See >> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html >> > >> > The symbolic factorization is usually much faster than a numeric >> factorization so that is not the cause of the slow "first solve". >> > >> > Barry >> > >> > >> > >> > > while the subsequent solves are very fast. I don't fully understand >> what's going on behind the curtains, but I'm guessing it's because the very >> first solve has to read in the non-zero structure for the LU factorization, >> while the subsequent solves are faster because the nonzero structure >> doesn't change. >> > > >> > > My question is, is there any way to save the information obtained >> from the very first solve, so that the next time I run the application, the >> very first solve can be fast too (provided that I still have the same >> nonzero structure)? >> > >> > >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From hzhang at mcs.anl.gov Wed Jan 29 11:33:57 2014 From: hzhang at mcs.anl.gov (Hong Zhang) Date: Wed, 29 Jan 2014 11:33:57 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <52E83C68.5030404@geology.wisc.edu> <1b8020f75d5a4520b5053159384d14f8@LUCKMAN.anl.gov> Message-ID: Tabrez: > I am getting the opposite result, i.e., MUMPS becomes slower when using > ParMETIS for parallel ordering. What did I mess up? Is the problem too > small? > I saw similar performance when adding parallel symbolic factorization into petsc interface, thus I did not set parallel symbolic factorization as default for petsc/mumps interface. How large is your matrix? Can you send us output of '-log_summary' for these two runs? Hong > > > Case 1 took 24.731s > > $ rm -f *vtk; time mpiexec -n 16 ./defmod -f point.inp -pc_type lu > -pc_factor_mat_solver_package mumps -mat_mumps_icntl_4 1 -log_summary > > 1.txt > > > Case 2 with "-mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2" took 34.720s > > $ rm -f *vtk; time mpiexec -n 16 ./defmod -f point.inp -pc_type lu > -pc_factor_mat_solver_package mumps -mat_mumps_icntl_4 1 -log_summary > -mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2 > 2.txt > > > Both 1.txt and 2.txt are attached. > > Regards, > > Tabrez > > > On 01/29/2014 09:18 AM, Hong Zhang wrote: > > MUMPS now supports parallel symbolic factorization. With petsc-3.4 > interface, you can use runtime option > > -mat_mumps_icntl_28 <1>: ICNTL(28): use 1 for sequential analysis and > ictnl(7) ordering, or 2 for parallel analysis and ictnl(29) ordering > -mat_mumps_icntl_29 <0>: ICNTL(29): parallel ordering 1 = ptscotch 2 = > parmetis > > e.g, '-mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2' activates parallel > symbolic factorization with pametis for matrix ordering. > Give it a try and let us know what you get. > > Hong > > > On Tue, Jan 28, 2014 at 5:48 PM, Smith, Barry F. wrote: > >> >> On Jan 28, 2014, at 5:39 PM, Matthew Knepley wrote: >> >> > On Tue, Jan 28, 2014 at 5:25 PM, Tabrez Ali >> wrote: >> > Hello >> > >> > This is my observation as well (with MUMPS). The first solve (after >> assembly which is super fast) takes a few mins (for ~1 million unknowns on >> 12/24 cores) but from then on only a few seconds for each subsequent solve >> for each time step. >> > >> > Perhaps symbolic factorization in MUMPS is all serial? >> > >> > Yes, it is. >> >> I missed this. I was just assuming a PETSc LU. Yes, I have no idea of >> relative time of symbolic and numeric for those other packages. >> >> Barry >> > >> > Matt >> > >> > Like the OP I often do multiple runs on the same problem but I dont >> know if MUMPS or any other direct solver can save the symbolic >> factorization info to a file that perhaps can be utilized in subsequent >> reruns to avoid the costly "first solves". >> > >> > Tabrez >> > >> > >> > On 01/28/2014 04:04 PM, Barry Smith wrote: >> > On Jan 28, 2014, at 1:36 PM, David Liu wrote: >> > >> > Hi, I'm writing an application that solves a sparse matrix many times >> using Pastix. I notice that the first solves takes a very long time, >> > Is it the first "solve" or the first time you put values into that >> matrix that "takes a long time"? If you are not properly preallocating the >> matrix then the initial setting of values will be slow and waste memory. >> See >> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html >> > >> > The symbolic factorization is usually much faster than a numeric >> factorization so that is not the cause of the slow "first solve". >> > >> > Barry >> > >> > >> > >> > while the subsequent solves are very fast. I don't fully understand >> what's going on behind the curtains, but I'm guessing it's because the very >> first solve has to read in the non-zero structure for the LU factorization, >> while the subsequent solves are faster because the nonzero structure >> doesn't change. >> > >> > My question is, is there any way to save the information obtained from >> the very first solve, so that the next time I run the application, the very >> first solve can be fast too (provided that I still have the same nonzero >> structure)? >> > >> > >> > -- >> > No one trusts a model except the one who wrote it; Everyone trusts an >> observation except the one who made it- Harlow Shapley >> > >> > >> > >> > >> > -- >> > What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> > -- Norbert Wiener >> >> > > > -- > No one trusts a model except the one who wrote it; Everyone trusts an observation except the one who made it- Harlow Shapley > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From hzhang at mcs.anl.gov Wed Jan 29 11:42:45 2014 From: hzhang at mcs.anl.gov (Hong Zhang) Date: Wed, 29 Jan 2014 11:42:45 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <52E83C68.5030404@geology.wisc.edu> <1b8020f75d5a4520b5053159384d14f8@LUCKMAN.anl.gov> Message-ID: Sorry, I overlooked your attachment, which gives '-log_summary': 1.txt: MatSolve 2 1.0 9.7397e-02 1.0 0.00e+00 0.0 5.4e+02 5.5e+03 6.0e+00 0 0 34 10 10 0 0 34 10 11 0 MatLUFactorSym 1 1.0 1.2882e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 7.0e+00 6 0 0 0 12 6 0 0 0 12 0 MatLUFactorNum 1 1.0 1.8813e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 90 0 0 0 2 90 0 0 0 2 0 2.txt: MatSolve 2 1.0 1.0811e-01 1.0 0.00e+00 0.0 4.9e+02 6.1e+03 6.0e+00 0 0 31 10 10 0 0 31 10 11 0 MatLUFactorSym 1 1.0 1.8920e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 7.0e+00 8 0 0 0 12 8 0 0 0 12 0 MatLUFactorNum 1 1.0 2.1836e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 89 0 0 0 2 89 0 0 0 2 0 Again, only 1st solve calls LU factorization, which dominates as expected. MatLUFactorSym is ignorable, but matrix ordering makes noticable effect. I would stay with sequential MatLUFactorSym and experiment different matrix orderings using '-mat_mumps_icntl_7 <>'. Hong On Wed, Jan 29, 2014 at 11:33 AM, Hong Zhang wrote: > Tabrez: > >> I am getting the opposite result, i.e., MUMPS becomes slower when using >> ParMETIS for parallel ordering. What did I mess up? Is the problem too >> small? >> > > I saw similar performance when adding parallel symbolic factorization into > petsc interface, thus I did not set > parallel symbolic factorization as default for petsc/mumps interface. > How large is your matrix? > > Can you send us output of '-log_summary' for these two runs? > > Hong > >> >> >> Case 1 took 24.731s >> >> $ rm -f *vtk; time mpiexec -n 16 ./defmod -f point.inp -pc_type lu >> -pc_factor_mat_solver_package mumps -mat_mumps_icntl_4 1 -log_summary > >> 1.txt >> >> >> Case 2 with "-mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2" took 34.720s >> >> $ rm -f *vtk; time mpiexec -n 16 ./defmod -f point.inp -pc_type lu >> -pc_factor_mat_solver_package mumps -mat_mumps_icntl_4 1 -log_summary >> -mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2 > 2.txt >> >> >> Both 1.txt and 2.txt are attached. >> >> Regards, >> >> Tabrez >> >> >> On 01/29/2014 09:18 AM, Hong Zhang wrote: >> >> MUMPS now supports parallel symbolic factorization. With petsc-3.4 >> interface, you can use runtime option >> >> -mat_mumps_icntl_28 <1>: ICNTL(28): use 1 for sequential analysis and >> ictnl(7) ordering, or 2 for parallel analysis and ictnl(29) ordering >> -mat_mumps_icntl_29 <0>: ICNTL(29): parallel ordering 1 = ptscotch 2 = >> parmetis >> >> e.g, '-mat_mumps_icntl_28 2 -mat_mumps_icntl_29 2' activates parallel >> symbolic factorization with pametis for matrix ordering. >> Give it a try and let us know what you get. >> >> Hong >> >> >> On Tue, Jan 28, 2014 at 5:48 PM, Smith, Barry F. wrote: >> >>> >>> On Jan 28, 2014, at 5:39 PM, Matthew Knepley wrote: >>> >>> > On Tue, Jan 28, 2014 at 5:25 PM, Tabrez Ali >>> wrote: >>> > Hello >>> > >>> > This is my observation as well (with MUMPS). The first solve (after >>> assembly which is super fast) takes a few mins (for ~1 million unknowns on >>> 12/24 cores) but from then on only a few seconds for each subsequent solve >>> for each time step. >>> > >>> > Perhaps symbolic factorization in MUMPS is all serial? >>> > >>> > Yes, it is. >>> >>> I missed this. I was just assuming a PETSc LU. Yes, I have no idea >>> of relative time of symbolic and numeric for those other packages. >>> >>> Barry >>> > >>> > Matt >>> > >>> > Like the OP I often do multiple runs on the same problem but I dont >>> know if MUMPS or any other direct solver can save the symbolic >>> factorization info to a file that perhaps can be utilized in subsequent >>> reruns to avoid the costly "first solves". >>> > >>> > Tabrez >>> > >>> > >>> > On 01/28/2014 04:04 PM, Barry Smith wrote: >>> > On Jan 28, 2014, at 1:36 PM, David Liu wrote: >>> > >>> > Hi, I'm writing an application that solves a sparse matrix many times >>> using Pastix. I notice that the first solves takes a very long time, >>> > Is it the first "solve" or the first time you put values into that >>> matrix that "takes a long time"? If you are not properly preallocating the >>> matrix then the initial setting of values will be slow and waste memory. >>> See >>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html >>> > >>> > The symbolic factorization is usually much faster than a numeric >>> factorization so that is not the cause of the slow "first solve". >>> > >>> > Barry >>> > >>> > >>> > >>> > while the subsequent solves are very fast. I don't fully understand >>> what's going on behind the curtains, but I'm guessing it's because the very >>> first solve has to read in the non-zero structure for the LU factorization, >>> while the subsequent solves are faster because the nonzero structure >>> doesn't change. >>> > >>> > My question is, is there any way to save the information obtained from >>> the very first solve, so that the next time I run the application, the very >>> first solve can be fast too (provided that I still have the same nonzero >>> structure)? >>> > >>> > >>> > -- >>> > No one trusts a model except the one who wrote it; Everyone trusts an >>> observation except the one who made it- Harlow Shapley >>> > >>> > >>> > >>> > >>> > -- >>> > What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> > -- Norbert Wiener >>> >>> >> >> >> -- >> No one trusts a model except the one who wrote it; Everyone trusts an observation except the one who made it- Harlow Shapley >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From danyang.su at gmail.com Wed Jan 29 12:28:05 2014 From: danyang.su at gmail.com (Danyang Su) Date: Wed, 29 Jan 2014 10:28:05 -0800 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP Message-ID: <52E94835.6080207@gmail.com> Hi All, Is it possible to configure PETSc with support for hybrid MPI-OpenMP? My codes have a lot of OpenMP instructions and work well. I have implemented PETSc solver in the codes and the solver can also work and help to speedup. Currently I have the following question: 1. If I configure PETSc with OpenMP, the OpenMP instructions work well and I can see the significant speedup in this part, but the speedup for the solver is very small or no speedup. I have asked the question before, maybe this is due to the bus bandwidth. Not sure on it. 2. If I configure PETSc with MPI, the speedup for the solver is significant, but the OpenMP instructions cannot work. The section with OpenMP instructions runs even 10 times slower. I tried to configure PETSc with both MPI and OpenMP enabled, but failed. BTW: I have also tried to use "PETSc for WINDOWS2.0" (http://www.msic.ch/Software). Both the OpenMP instructions and PETSc solver (MPI) can work well, but the solver speedup is not as significant as compiling in CYGWIN with PETSc 3.4.3. Usually the speedup of solver is 1.5 times slower. Is it possible to configure PETSc with Hybrid MPI-OPenMP? How? Thanks and regards, Danyang From daveliu at mit.edu Wed Jan 29 12:53:30 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 29 Jan 2014 13:53:30 -0500 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> Message-ID: sure thing, here's the log summary from mumps ======= ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- ./SaltOut on a REAL named nid15905 with 12 processors, by Unknown Wed Jan 29 13:51:15 2014 Using Petsc Release Version 3.3.0, Patch 4, Fri Oct 26 10:46:51 CDT 2012 Max Max/Min Avg Total Time (sec): 2.674e+01 1.00000 2.674e+01 Objects: 1.150e+02 1.00000 1.150e+02 Flops: 2.184e+07 1.75464 1.327e+07 1.592e+08 Flops/sec: 8.168e+05 1.75464 4.961e+05 5.954e+06 MPI Messages: 5.365e+02 1.37212 4.358e+02 5.229e+03 MPI Message Lengths: 1.813e+07 1.39374 3.270e+04 1.710e+08 MPI Reductions: 2.980e+02 1.00000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 0: Main Stage: 2.6743e+01 100.0% 1.5922e+08 100.0% 5.229e+03 100.0% 3.270e+04 100.0% 2.970e+02 99.7% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flops: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent Avg. len: average message length Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %f - percent flops in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage VecView 1 1.0 1.7160e+00 9.1 0.00e+00 0.0 1.1e+01 1.7e+05 0.0e+00 4 0 0 1 0 4 0 0 1 0 0 VecMDot 5 1.0 2.0933e-03 1.7 4.75e+05 1.0 0.0e+00 0.0e+00 5.0e+00 0 4 0 0 2 0 4 0 0 2 2724 VecNorm 11 1.0 1.3332e-03 2.1 4.75e+05 1.0 0.0e+00 0.0e+00 1.1e+01 0 4 0 0 4 0 4 0 0 4 4277 VecScale 13 1.0 2.6584e-04 1.3 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 12676 VecCopy 18 1.0 2.1093e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 53 1.0 3.2377e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 6 1.0 6.5589e-04 1.2 2.59e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 4742 VecMAXPY 7 1.0 8.7738e-04 1.3 6.91e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 0 5 0 0 0 9454 VecAssemblyBegin 41 1.0 9.8640e-0110.4 0.00e+00 0.0 6.6e+01 4.9e+04 1.2e+02 3 0 1 2 41 3 0 1 2 41 0 VecAssemblyEnd 41 1.0 4.4966e-04 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 1 1.0 2.2316e-04 1.2 2.16e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1162 VecScatterBegin 73 1.0 3.7682e-02 1.7 0.00e+00 0.0 4.2e+03 3.7e+04 7.0e+00 0 0 80 91 2 0 0 80 91 2 0 VecScatterEnd 66 1.0 5.7186e-02 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 7 1.0 1.0850e-03 2.4 4.54e+05 1.0 0.0e+00 0.0e+00 7.0e+00 0 3 0 0 2 0 3 0 0 2 5017 MatMult 9 1.0 1.1722e-01 1.2 1.96e+07 1.9 1.2e+03 8.7e+04 0.0e+00 0 83 23 61 0 0 83 23 61 0 1133 MatSolve 7 1.0 1.2316e+00 1.0 0.00e+00 0.0 1.0e+03 2.1e+04 1.1e+01 5 0 20 12 4 5 0 20 12 4 0 MatLUFactorSym 1 1.0 6.9763e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 7.0e+00 26 0 0 0 2 26 0 0 0 2 0 MatLUFactorNum 1 1.0 1.4693e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 55 0 0 0 0 55 0 0 0 0 0 MatAssemblyBegin 7 1.0 3.9971e-02 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.4e+01 0 0 0 0 5 0 0 0 0 5 0 MatAssemblyEnd 7 1.0 2.1923e-01 1.1 0.00e+00 0.0 2.6e+02 2.2e+04 8.0e+00 1 0 5 3 3 1 0 5 3 3 0 KSPGMRESOrthog 5 1.0 2.8822e-03 1.5 9.50e+05 1.0 0.0e+00 0.0e+00 5.0e+00 0 7 0 0 2 0 7 0 0 2 3957 KSPSetUp 1 1.0 8.2898e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 2 1.0 2.2964e+01 1.0 1.26e+07 1.7 1.7e+03 4.7e+04 3.9e+01 86 59 32 46 13 86 59 32 46 13 4 PCSetUp 1 1.0 2.1672e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.6e+01 81 0 0 0 5 81 0 0 0 5 0 PCApply 7 1.0 1.2317e+00 1.0 0.00e+00 0.0 1.0e+03 2.1e+04 1.1e+01 5 0 20 12 4 5 0 20 12 4 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Vector 53 53 8461496 0 Vector Scatter 17 17 17196 0 Index Set 35 35 574428 0 Matrix 6 6 21034632 0 Krylov Solver 1 1 18288 0 Preconditioner 1 1 936 0 Viewer 2 1 712 0 ======================================================================================================================== Average time to get PetscTime(): 9.53674e-08 Average time for MPI_Barrier(): 6.21796e-05 Average time for zero size MPI_Send(): 1.08282e-05 #PETSc Option Table entries: -Dmax 0.01 -LowerPML 0 -Mx 72 -My 60 -Mz 4 -Nc 3 -Npmlx 0 -Npmly 0 -Npmlz 3 -Nx 72 -Ny 60 -Nz 10 -dD 0.01 -epsfile eps3dhi.txt -fproffile fprof3dhi.txt -gamma 2.0 -hx 0.0625 -hy 0.061858957413174 -hz 0.2 -in0 pass -log_summary -norm 0.01 -out0 temp -pc_factor_mat_solver_package mumps -pc_type lu -printnewton 1 -wa 1.5 #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure run at: Wed Apr 17 13:30:40 2013 Configure options: --prefix=/sw/xt/petsc/3.3/cnl3.1_pgi11.9.0 --PETSC_ARCH=REAL --known-level1-dcache-assoc=2 --known-level1-dcache-size=65536 --known-level1-dcache-linesize=64 --with-cc=cc --with-fc=ftn --with-cxx=CC --with-fortran --with-fortran-interfaces=1 --with-single-library=1 --with-shared-libraries=0 --with-scalar-type=real --with-debugging=0 --known-mpi-shared-libraries=0 --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --known-memcmp-ok=1 --COPTFLAGS=-fast -Mipa=fast --FOPTFLAGS=-fast -Mipa=fast --with-blas-lapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a --with-scalapack=1 --with-scalapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a --with-scalapack-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include --with-ptscotch=1 --download-ptscotch=yes --with-blacs=1 --with-blacs-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a --with-blacs-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include --with-superlu_dist=1 --download-superlu_dist=yes --with-metis=1 --download-metis=yes --with-parmetis=1 --download-parmetis=yes --with-mumps=1 --download-mumps=yes --with-hypre=1 --download-hypre --with-fftw=1 --with-fftw-dir=/opt/fftw/3.3.0.0/x86_64 --with-hdf5=1 --with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.6/pgi/109 ----------------------------------------- Libraries compiled on Wed Apr 17 13:30:40 2013 on krakenpf3 Machine characteristics: Linux-2.6.27.48-0.12.1_1.0301.5943-cray_ss_s-x86_64-with-SuSE-11-x86_64 Using PETSc directory: /nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4 Using PETSc arch: REAL ----------------------------------------- Using C compiler: cc -fast ${COPTFLAGS} ${CFLAGS} Using Fortran compiler: ftn -fast ${FOPTFLAGS} ${FFLAGS} ----------------------------------------- Using include paths: -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include -I/opt/fftw/3.3.0.0/x86_64/include-I/opt/cray/hdf5-parallel/1.8.6/pgi/109/include -I/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/include -I/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/include -I/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/include -I/opt/xt-libsci/11.0.06/pgi/109/istanbul/include -I/usr/include/alps ----------------------------------------- Using C linker: cc Using Fortran linker: ftn Using libraries: -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -lpetsc -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib -lsuperlu_dist_3.1 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lptesmumps -lptscotch -lptscotcherr -Wl,-rpath,/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -L/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -lsci_pgi -lsci_pgi -lpthread -Wl,-rpath,/opt/fftw/3.3.0.0/x86_64/lib -L/opt/fftw/3.3.0.0/x86_64/lib-lfftw3_mpi -lfftw3 -lHYPRE -L/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/lib64 -L/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/lib64 -L/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/lib -L/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -L/usr/lib/alps -L/opt/pgi/11.9.0/linux86-64/11.9/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -L/opt/cray/atp/1.4.1/lib -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals -lalpslli -lalpsutil -lpthread -Wl,-rpath,/opt/pgi/11.9.0/linux86-64/11.9/lib -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lsci_pgi -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -ldl -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals -lalpslli -lalpsutil -lpthread -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lm -lz -lz -ldl ----------------------------------------- On Wed, Jan 29, 2014 at 12:30 PM, Hong Zhang wrote: > David, > The 1st solve calls LU factorization once which took 3.3686e+01 sec. > The remaining solves do not call LU factorization at all, thus fast. > > >> MatSolve 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >> 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 >> MatLUFactorSym 1 1.0 4.4394e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 >> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 >> MatLUFactorNum 1 1.0 3.3686e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >> 0.0e+00 85 0 0 0 0 85 0 0 0 0 0 >> > > For petsc/Superlu_dist interface, MatLUFactorNum actually includes time > for MatLUFactorSym > because Superlu_dist's API design., i.e., 3.3686e+01 includes time spent > on MatLUFactorSym. > Can you send us '-log_summary' from mumps? > > Hong > > > >> MatAssemblyBegin 7 1.0 4.4827e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 >> 1.4e+01 0 0 0 0 5 0 0 0 0 5 0 >> MatAssemblyEnd 7 1.0 2.1890e-01 1.1 0.00e+00 0.0 2.6e+02 2.2e+04 >> 8.0e+00 1 0 6 4 3 1 0 6 4 3 0 >> KSPGMRESOrthog 6 1.0 3.5851e-03 1.2 1.12e+06 1.0 0.0e+00 0.0e+00 >> 6.0e+00 0 8 0 0 2 0 8 0 0 2 3760 >> KSPSetUp 1 1.0 8.0609e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 >> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 >> KSPSolve 2 1.0 3.6561e+01 1.0 1.51e+07 1.7 7.9e+02 8.7e+04 >> 2.2e+01 92 63 18 43 8 92 63 18 43 8 3 >> PCSetUp 1 1.0 3.3688e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >> 8.0e+00 85 0 0 0 3 85 0 0 0 3 0 >> PCApply 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >> 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 >> >> ------------------------------------------------------------------------------------------------------------------------ >> Memory usage is given in bytes: >> Object Type Creations Destructions Memory Descendants' >> Mem. >> Reports information only for process 0. >> --- Event Stage 0: Main Stage >> Vector 50 50 6210712 0 >> Vector Scatter 15 15 15540 0 >> Index Set 32 32 465324 0 >> Matrix 6 6 21032760 0 >> Krylov Solver 1 1 18288 0 >> Preconditioner 1 1 936 0 >> Viewer 2 1 712 0 >> >> ======================================================================================================================== >> Average time to get PetscTime(): 9.53674e-08 >> Average time for MPI_Barrier(): 5.38826e-06 >> Average time for zero size MPI_Send(): 9.57648e-06 >> #PETSc Option Table entries: >> -Dmax 0.01 >> -LowerPML 0 >> -Mx 72 >> -My 60 >> -Mz 4 >> -Nc 3 >> -Npmlx 0 >> -Npmly 0 >> -Npmlz 3 >> -Nx 72 >> -Ny 60 >> -Nz 10 >> -dD 0.01 >> -epsfile eps3dhi.txt >> -fproffile fprof3dhi.txt >> -gamma 2.0 >> -hx 0.0625 >> -hy 0.061858957413174 >> -hz 0.2 >> -in0 pass >> -log_summary >> -norm 0.01 >> -out0 above >> -pc_factor_mat_solver_package superlu_dist >> -pc_type lu >> -printnewton 1 >> -wa 1.5 >> #End of PETSc Option Table entries >> Compiled without FORTRAN kernels >> Compiled with full precision matrices (default) >> sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 >> sizeof(PetscScalar) 8 sizeof(PetscInt) 4 >> Configure run at: Wed Apr 17 13:30:40 2013 >> Configure options: --prefix=/sw/xt/petsc/3.3/cnl3.1_pgi11.9.0 >> --PETSC_ARCH=REAL --known-level1-dcache-assoc=2 >> --known-level1-dcache-size=65536 --known-level1-dcache-linesize=64 >> --with-cc=cc --with-fc=ftn --with-cxx=CC --with-fortran >> --with-fortran-interfaces=1 --with-single-library=1 >> --with-shared-libraries=0 --with-scalar-type=real --with-debugging=0 >> --known-mpi-shared-libraries=0 --with-clib-autodetect=0 >> --with-fortranlib-autodetect=0 --known-memcmp-ok=1 --COPTFLAGS=-fast >> -Mipa=fast --FOPTFLAGS=-fast -Mipa=fast >> --with-blas-lapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >> --with-scalapack=1 >> --with-scalapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >> --with-scalapack-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include >> --with-ptscotch=1 --download-ptscotch=yes --with-blacs=1 >> --with-blacs-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >> --with-blacs-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include >> --with-superlu_dist=1 --download-superlu_dist=yes --with-metis=1 >> --download-metis=yes --with-parmetis=1 --download-parmetis=yes >> --with-mumps=1 --download-mumps=yes --with-hypre=1 --download-hypre >> --with-fftw=1 --with-fftw-dir=/opt/fftw/3.3.0.0/x86_64 --with-hdf5=1 >> --with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.6/pgi/109 >> ----------------------------------------- >> Libraries compiled on Wed Apr 17 13:30:40 2013 on krakenpf3 >> Machine characteristics: Linux-2.6.27.48-0.12.1 >> _1.0301.5943-cray_ss_s-x86_64-with-SuSE-11-x86_64 >> Using PETSc directory: >> /nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4 >> Using PETSc arch: REAL >> ----------------------------------------- >> Using C compiler: cc -fast ${COPTFLAGS} ${CFLAGS} >> Using Fortran compiler: ftn -fast ${FOPTFLAGS} ${FFLAGS} >> ----------------------------------------- >> Using include paths: >> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include >> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include >> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include >> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include >> -I/opt/fftw/3.3.0.0/x86_64/include-I/opt/cray/hdf5-parallel/1.8.6/pgi/109/include >> -I/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/include >> -I/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/include >> -I/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/include >> -I/opt/xt-libsci/11.0.06/pgi/109/istanbul/include -I/usr/include/alps >> ----------------------------------------- >> Using C linker: cc >> Using Fortran linker: ftn >> Using libraries: >> -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >> -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >> -lpetsc >> -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >> -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >> -lsuperlu_dist_3.1 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common >> -lpord -lparmetis -lmetis -lptesmumps -lptscotch -lptscotcherr >> -Wl,-rpath,/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib >> -L/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -lsci_pgi -lsci_pgi -lpthread >> -Wl,-rpath,/opt/fftw/3.3.0.0/x86_64/lib -L/opt/fftw/3.3.0.0/x86_64/lib-lfftw3_mpi -lfftw3 -lHYPRE >> -L/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/lib64 >> -L/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/lib64 >> -L/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/lib >> -L/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -L/usr/lib/alps >> -L/opt/pgi/11.9.0/linux86-64/11.9/lib >> -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -L/opt/cray/atp/1.4.1/lib >> -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi >> -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi >> -lportals -lalpslli -lalpsutil -lpthread >> -Wl,-rpath,/opt/pgi/11.9.0/linux86-64/11.9/lib -lzceh -lgcc_eh -lstdmpz >> -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc >> -lpgc -lsci_pgi -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib >> -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -ldl -lAtpSigHandler >> -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp >> -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals >> -lalpslli -lalpsutil -lpthread -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp >> -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lm >> -lz -lz -ldl >> ----------------------------------------- >> >> >> >> >> On Tue, Jan 28, 2014 at 6:34 PM, Barry Smith wrote: >> >>> >>> Ok then use -log_summary and put the first solve in a separate stage >>> (see PetscStageRegister()) and send the results of a run back demonstrating >>> the slow first solver and we may be able to see what the story is. >>> >>> Barry >>> >>> On Jan 28, 2014, at 5:23 PM, David Liu wrote: >>> >>> > wow that is news to me. I always assumed that this is normal. >>> > >>> > I'm pretty certain it's not the preallocation. I'm using MatCreateMPI, >>> and to my knowledge I wouldn't even be able to set the values without >>> crashing if I didn't preallocate. (If I'm not mistaken, the setting values >>> slowly without preallocating is only possible if you create the Mat using >>> MatCreate + MatSetup). >>> > >>> > Also, I'm certain that the time is taken on the first solve, not the >>> setting of values, because I use the matrix in a MatMult first to get the >>> RHS before solving, and the MatMult happens before the long first solve. >>> > >>> > >>> > On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith >>> wrote: >>> > >>> > On Jan 28, 2014, at 1:36 PM, David Liu wrote: >>> > >>> > > Hi, I'm writing an application that solves a sparse matrix many >>> times using Pastix. I notice that the first solves takes a very long time, >>> > >>> > Is it the first "solve" or the first time you put values into that >>> matrix that "takes a long time"? If you are not properly preallocating the >>> matrix then the initial setting of values will be slow and waste memory. >>> See >>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html >>> > >>> > The symbolic factorization is usually much faster than a numeric >>> factorization so that is not the cause of the slow "first solve". >>> > >>> > Barry >>> > >>> > >>> > >>> > > while the subsequent solves are very fast. I don't fully understand >>> what's going on behind the curtains, but I'm guessing it's because the very >>> first solve has to read in the non-zero structure for the LU factorization, >>> while the subsequent solves are faster because the nonzero structure >>> doesn't change. >>> > > >>> > > My question is, is there any way to save the information obtained >>> from the very first solve, so that the next time I run the application, the >>> very first solve can be fast too (provided that I still have the same >>> nonzero structure)? >>> > >>> > >>> >>> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From rupp at mcs.anl.gov Wed Jan 29 15:23:42 2014 From: rupp at mcs.anl.gov (Karl Rupp) Date: Wed, 29 Jan 2014 22:23:42 +0100 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP In-Reply-To: <52E94835.6080207@gmail.com> References: <52E94835.6080207@gmail.com> Message-ID: <52E9715E.20207@mcs.anl.gov> Hi Danyang, PETSc is supposed to work with the MPI-OpenMP hybridization just as you request it. > I tried to configure PETSc with both MPI and OpenMP enabled, but failed. Please provide details on why it failed. Please send configure.log and make.log to petsc-maint. > BTW: I have also tried to use "PETSc for WINDOWS2.0" > (http://www.msic.ch/Software). Both the OpenMP instructions and PETSc > solver (MPI) can work well, but the solver speedup is not as significant > as compiling in CYGWIN with PETSc 3.4.3. Usually the speedup of solver > is 1.5 times slower. Note that due to the saturation of the memory links you have to be careful with what you define as 'speedup' and how you compare execution times. Also, thread affinities become pretty important if you are on a NUMA machine. > Is it possible to configure PETSc with Hybrid MPI-OPenMP? How? --with-threadcomm --with-openmp should suffice. Best regards, Karli From hzhang at mcs.anl.gov Wed Jan 29 15:29:00 2014 From: hzhang at mcs.anl.gov (Hong Zhang) Date: Wed, 29 Jan 2014 15:29:00 -0600 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> Message-ID: David : Thanks. > MatSolve 7 1.0 1.2316e+00 1.0 0.00e+00 0.0 1.0e+03 2.1e+04 > 1.1e+01 5 0 20 12 4 5 0 20 12 4 0 > MatLUFactorSym 1 1.0 6.9763e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 7.0e+00 26 0 0 0 2 26 0 0 0 2 0 > MatLUFactorNum 1 1.0 1.4693e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 1.0e+00 55 0 0 0 0 55 0 0 0 0 0 > Here it shows LU factorization is called once, takes (26+55)% of total time :-( MatLUFactorSym takes 1/2 of MatLUFactorNum time. '-ksp_view' may show what ordering is being used. I usually use '-mat_mumps_icntl_7 2'. Small acceleration may be achieved by experimenting matrix orderings. Direct solver is expensive in memory, execution time and scalability. Do you have option of using other preconditioner? Hong > > > > On Wed, Jan 29, 2014 at 12:30 PM, Hong Zhang wrote: > >> David, >> The 1st solve calls LU factorization once which took 3.3686e+01 sec. >> The remaining solves do not call LU factorization at all, thus fast. >> >> >>> MatSolve 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >>> 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 >>> MatLUFactorSym 1 1.0 4.4394e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 >>> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 >>> MatLUFactorNum 1 1.0 3.3686e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >>> 0.0e+00 85 0 0 0 0 85 0 0 0 0 0 >>> >> >> For petsc/Superlu_dist interface, MatLUFactorNum actually includes >> time for MatLUFactorSym >> because Superlu_dist's API design., i.e., 3.3686e+01 includes time spent >> on MatLUFactorSym. >> Can you send us '-log_summary' from mumps? >> >> Hong >> >> >> >>> MatAssemblyBegin 7 1.0 4.4827e-02 3.4 0.00e+00 0.0 0.0e+00 >>> 0.0e+00 1.4e+01 0 0 0 0 5 0 0 0 0 5 0 >>> MatAssemblyEnd 7 1.0 2.1890e-01 1.1 0.00e+00 0.0 2.6e+02 2.2e+04 >>> 8.0e+00 1 0 6 4 3 1 0 6 4 3 0 >>> KSPGMRESOrthog 6 1.0 3.5851e-03 1.2 1.12e+06 1.0 0.0e+00 0.0e+00 >>> 6.0e+00 0 8 0 0 2 0 8 0 0 2 3760 >>> KSPSetUp 1 1.0 8.0609e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 >>> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 >>> KSPSolve 2 1.0 3.6561e+01 1.0 1.51e+07 1.7 7.9e+02 8.7e+04 >>> 2.2e+01 92 63 18 43 8 92 63 18 43 8 3 >>> PCSetUp 1 1.0 3.3688e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >>> 8.0e+00 85 0 0 0 3 85 0 0 0 3 0 >>> PCApply 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >>> 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 >>> >>> ------------------------------------------------------------------------------------------------------------------------ >>> Memory usage is given in bytes: >>> Object Type Creations Destructions Memory Descendants' >>> Mem. >>> Reports information only for process 0. >>> --- Event Stage 0: Main Stage >>> Vector 50 50 6210712 0 >>> Vector Scatter 15 15 15540 0 >>> Index Set 32 32 465324 0 >>> Matrix 6 6 21032760 0 >>> Krylov Solver 1 1 18288 0 >>> Preconditioner 1 1 936 0 >>> Viewer 2 1 712 0 >>> >>> ======================================================================================================================== >>> Average time to get PetscTime(): 9.53674e-08 >>> Average time for MPI_Barrier(): 5.38826e-06 >>> Average time for zero size MPI_Send(): 9.57648e-06 >>> #PETSc Option Table entries: >>> -Dmax 0.01 >>> -LowerPML 0 >>> -Mx 72 >>> -My 60 >>> -Mz 4 >>> -Nc 3 >>> -Npmlx 0 >>> -Npmly 0 >>> -Npmlz 3 >>> -Nx 72 >>> -Ny 60 >>> -Nz 10 >>> -dD 0.01 >>> -epsfile eps3dhi.txt >>> -fproffile fprof3dhi.txt >>> -gamma 2.0 >>> -hx 0.0625 >>> -hy 0.061858957413174 >>> -hz 0.2 >>> -in0 pass >>> -log_summary >>> -norm 0.01 >>> -out0 above >>> -pc_factor_mat_solver_package superlu_dist >>> -pc_type lu >>> -printnewton 1 >>> -wa 1.5 >>> #End of PETSc Option Table entries >>> Compiled without FORTRAN kernels >>> Compiled with full precision matrices (default) >>> sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 >>> sizeof(PetscScalar) 8 sizeof(PetscInt) 4 >>> Configure run at: Wed Apr 17 13:30:40 2013 >>> Configure options: --prefix=/sw/xt/petsc/3.3/cnl3.1_pgi11.9.0 >>> --PETSC_ARCH=REAL --known-level1-dcache-assoc=2 >>> --known-level1-dcache-size=65536 --known-level1-dcache-linesize=64 >>> --with-cc=cc --with-fc=ftn --with-cxx=CC --with-fortran >>> --with-fortran-interfaces=1 --with-single-library=1 >>> --with-shared-libraries=0 --with-scalar-type=real --with-debugging=0 >>> --known-mpi-shared-libraries=0 --with-clib-autodetect=0 >>> --with-fortranlib-autodetect=0 --known-memcmp-ok=1 --COPTFLAGS=-fast >>> -Mipa=fast --FOPTFLAGS=-fast -Mipa=fast >>> --with-blas-lapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >>> --with-scalapack=1 >>> --with-scalapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >>> --with-scalapack-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include >>> --with-ptscotch=1 --download-ptscotch=yes --with-blacs=1 >>> --with-blacs-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >>> --with-blacs-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include >>> --with-superlu_dist=1 --download-superlu_dist=yes --with-metis=1 >>> --download-metis=yes --with-parmetis=1 --download-parmetis=yes >>> --with-mumps=1 --download-mumps=yes --with-hypre=1 --download-hypre >>> --with-fftw=1 --with-fftw-dir=/opt/fftw/3.3.0.0/x86_64 --with-hdf5=1 >>> --with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.6/pgi/109 >>> ----------------------------------------- >>> Libraries compiled on Wed Apr 17 13:30:40 2013 on krakenpf3 >>> Machine characteristics: Linux-2.6.27.48-0.12.1 >>> _1.0301.5943-cray_ss_s-x86_64-with-SuSE-11-x86_64 >>> Using PETSc directory: >>> /nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4 >>> Using PETSc arch: REAL >>> ----------------------------------------- >>> Using C compiler: cc -fast ${COPTFLAGS} ${CFLAGS} >>> Using Fortran compiler: ftn -fast ${FOPTFLAGS} ${FFLAGS} >>> ----------------------------------------- >>> Using include paths: >>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include >>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include >>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include >>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include >>> -I/opt/fftw/3.3.0.0/x86_64/include-I/opt/cray/hdf5-parallel/1.8.6/pgi/109/include >>> -I/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/include >>> -I/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/include >>> -I/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/include >>> -I/opt/xt-libsci/11.0.06/pgi/109/istanbul/include -I/usr/include/alps >>> ----------------------------------------- >>> Using C linker: cc >>> Using Fortran linker: ftn >>> Using libraries: >>> -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>> -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>> -lpetsc >>> -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>> -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>> -lsuperlu_dist_3.1 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common >>> -lpord -lparmetis -lmetis -lptesmumps -lptscotch -lptscotcherr >>> -Wl,-rpath,/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib >>> -L/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -lsci_pgi -lsci_pgi -lpthread >>> -Wl,-rpath,/opt/fftw/3.3.0.0/x86_64/lib -L/opt/fftw/3.3.0.0/x86_64/lib-lfftw3_mpi -lfftw3 -lHYPRE >>> -L/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/lib64 >>> -L/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/lib64 >>> -L/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/lib >>> -L/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -L/usr/lib/alps >>> -L/opt/pgi/11.9.0/linux86-64/11.9/lib >>> -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -L/opt/cray/atp/1.4.1/lib >>> -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi >>> -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi >>> -lportals -lalpslli -lalpsutil -lpthread >>> -Wl,-rpath,/opt/pgi/11.9.0/linux86-64/11.9/lib -lzceh -lgcc_eh -lstdmpz >>> -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc >>> -lpgc -lsci_pgi -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib >>> -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -ldl -lAtpSigHandler >>> -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp >>> -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals >>> -lalpslli -lalpsutil -lpthread -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp >>> -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lm >>> -lz -lz -ldl >>> ----------------------------------------- >>> >>> >>> >>> >>> On Tue, Jan 28, 2014 at 6:34 PM, Barry Smith wrote: >>> >>>> >>>> Ok then use -log_summary and put the first solve in a separate stage >>>> (see PetscStageRegister()) and send the results of a run back demonstrating >>>> the slow first solver and we may be able to see what the story is. >>>> >>>> Barry >>>> >>>> On Jan 28, 2014, at 5:23 PM, David Liu wrote: >>>> >>>> > wow that is news to me. I always assumed that this is normal. >>>> > >>>> > I'm pretty certain it's not the preallocation. I'm using >>>> MatCreateMPI, and to my knowledge I wouldn't even be able to set the values >>>> without crashing if I didn't preallocate. (If I'm not mistaken, the setting >>>> values slowly without preallocating is only possible if you create the Mat >>>> using MatCreate + MatSetup). >>>> > >>>> > Also, I'm certain that the time is taken on the first solve, not the >>>> setting of values, because I use the matrix in a MatMult first to get the >>>> RHS before solving, and the MatMult happens before the long first solve. >>>> > >>>> > >>>> > On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith >>>> wrote: >>>> > >>>> > On Jan 28, 2014, at 1:36 PM, David Liu wrote: >>>> > >>>> > > Hi, I'm writing an application that solves a sparse matrix many >>>> times using Pastix. I notice that the first solves takes a very long time, >>>> > >>>> > Is it the first "solve" or the first time you put values into that >>>> matrix that "takes a long time"? If you are not properly preallocating the >>>> matrix then the initial setting of values will be slow and waste memory. >>>> See >>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html >>>> > >>>> > The symbolic factorization is usually much faster than a numeric >>>> factorization so that is not the cause of the slow "first solve". >>>> > >>>> > Barry >>>> > >>>> > >>>> > >>>> > > while the subsequent solves are very fast. I don't fully understand >>>> what's going on behind the curtains, but I'm guessing it's because the very >>>> first solve has to read in the non-zero structure for the LU factorization, >>>> while the subsequent solves are faster because the nonzero structure >>>> doesn't change. >>>> > > >>>> > > My question is, is there any way to save the information obtained >>>> from the very first solve, so that the next time I run the application, the >>>> very first solve can be fast too (provided that I still have the same >>>> nonzero structure)? >>>> > >>>> > >>>> >>>> >>> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From daveliu at mit.edu Wed Jan 29 15:42:35 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 29 Jan 2014 16:42:35 -0500 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> Message-ID: Hi Hong, Thanks a lot. I ran it with -ksp_view, and here are the relevant lines: matrix ordering: natural ICNTL(7) (sequentia matrix ordering):7 ICNTL(28) (use parallel or sequential ordering): 1 ICNTL(29) (parallel ordering): 0 INFOG(7) (ordering option effectively use after analysis): 5 INFOG(11) (order of largest frontal matrix after factorization): 4384 Not too sure if there's anything I can do about this. Also, I am definately willing to use other preconditioners. If direct solvers are expensive, what are the cheaper alternatives? best, David On Wed, Jan 29, 2014 at 4:29 PM, Hong Zhang wrote: > David : > Thanks. > > >> MatSolve 7 1.0 1.2316e+00 1.0 0.00e+00 0.0 1.0e+03 2.1e+04 >> 1.1e+01 5 0 20 12 4 5 0 20 12 4 0 >> MatLUFactorSym 1 1.0 6.9763e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >> 7.0e+00 26 0 0 0 2 26 0 0 0 2 0 >> MatLUFactorNum 1 1.0 1.4693e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 >> 1.0e+00 55 0 0 0 0 55 0 0 0 0 0 >> > > Here it shows LU factorization is called once, takes (26+55)% of total > time :-( > MatLUFactorSym takes 1/2 of MatLUFactorNum time. > '-ksp_view' may show what ordering is being used. > I usually use > '-mat_mumps_icntl_7 2'. Small acceleration may be achieved by > experimenting matrix orderings. > > Direct solver is expensive in memory, execution time and scalability. Do > you have option of using > other preconditioner? > > Hong > >> >> >> >> On Wed, Jan 29, 2014 at 12:30 PM, Hong Zhang wrote: >> >>> David, >>> The 1st solve calls LU factorization once which took 3.3686e+01 sec. >>> The remaining solves do not call LU factorization at all, thus fast. >>> >>> >>>> MatSolve 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 >>>> 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 >>>> MatLUFactorSym 1 1.0 4.4394e-04 1.1 0.00e+00 0.0 0.0e+00 >>>> 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 >>>> MatLUFactorNum 1 1.0 3.3686e+01 1.0 0.00e+00 0.0 0.0e+00 >>>> 0.0e+00 0.0e+00 85 0 0 0 0 85 0 0 0 0 0 >>>> >>> >>> For petsc/Superlu_dist interface, MatLUFactorNum actually includes >>> time for MatLUFactorSym >>> because Superlu_dist's API design., i.e., 3.3686e+01 includes time spent >>> on MatLUFactorSym. >>> Can you send us '-log_summary' from mumps? >>> >>> Hong >>> >>> >>> >>>> MatAssemblyBegin 7 1.0 4.4827e-02 3.4 0.00e+00 0.0 0.0e+00 >>>> 0.0e+00 1.4e+01 0 0 0 0 5 0 0 0 0 5 0 >>>> MatAssemblyEnd 7 1.0 2.1890e-01 1.1 0.00e+00 0.0 2.6e+02 >>>> 2.2e+04 8.0e+00 1 0 6 4 3 1 0 6 4 3 0 >>>> KSPGMRESOrthog 6 1.0 3.5851e-03 1.2 1.12e+06 1.0 0.0e+00 >>>> 0.0e+00 6.0e+00 0 8 0 0 2 0 8 0 0 2 3760 >>>> KSPSetUp 1 1.0 8.0609e-04 1.4 0.00e+00 0.0 0.0e+00 >>>> 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 >>>> KSPSolve 2 1.0 3.6561e+01 1.0 1.51e+07 1.7 7.9e+02 >>>> 8.7e+04 2.2e+01 92 63 18 43 8 92 63 18 43 8 3 >>>> PCSetUp 1 1.0 3.3688e+01 1.0 0.00e+00 0.0 0.0e+00 >>>> 0.0e+00 8.0e+00 85 0 0 0 3 85 0 0 0 3 0 >>>> PCApply 8 1.0 2.8005e+00 1.0 0.00e+00 0.0 0.0e+00 >>>> 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 >>>> >>>> ------------------------------------------------------------------------------------------------------------------------ >>>> Memory usage is given in bytes: >>>> Object Type Creations Destructions Memory Descendants' >>>> Mem. >>>> Reports information only for process 0. >>>> --- Event Stage 0: Main Stage >>>> Vector 50 50 6210712 0 >>>> Vector Scatter 15 15 15540 0 >>>> Index Set 32 32 465324 0 >>>> Matrix 6 6 21032760 0 >>>> Krylov Solver 1 1 18288 0 >>>> Preconditioner 1 1 936 0 >>>> Viewer 2 1 712 0 >>>> >>>> ======================================================================================================================== >>>> Average time to get PetscTime(): 9.53674e-08 >>>> Average time for MPI_Barrier(): 5.38826e-06 >>>> Average time for zero size MPI_Send(): 9.57648e-06 >>>> #PETSc Option Table entries: >>>> -Dmax 0.01 >>>> -LowerPML 0 >>>> -Mx 72 >>>> -My 60 >>>> -Mz 4 >>>> -Nc 3 >>>> -Npmlx 0 >>>> -Npmly 0 >>>> -Npmlz 3 >>>> -Nx 72 >>>> -Ny 60 >>>> -Nz 10 >>>> -dD 0.01 >>>> -epsfile eps3dhi.txt >>>> -fproffile fprof3dhi.txt >>>> -gamma 2.0 >>>> -hx 0.0625 >>>> -hy 0.061858957413174 >>>> -hz 0.2 >>>> -in0 pass >>>> -log_summary >>>> -norm 0.01 >>>> -out0 above >>>> -pc_factor_mat_solver_package superlu_dist >>>> -pc_type lu >>>> -printnewton 1 >>>> -wa 1.5 >>>> #End of PETSc Option Table entries >>>> Compiled without FORTRAN kernels >>>> Compiled with full precision matrices (default) >>>> sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 >>>> sizeof(PetscScalar) 8 sizeof(PetscInt) 4 >>>> Configure run at: Wed Apr 17 13:30:40 2013 >>>> Configure options: --prefix=/sw/xt/petsc/3.3/cnl3.1_pgi11.9.0 >>>> --PETSC_ARCH=REAL --known-level1-dcache-assoc=2 >>>> --known-level1-dcache-size=65536 --known-level1-dcache-linesize=64 >>>> --with-cc=cc --with-fc=ftn --with-cxx=CC --with-fortran >>>> --with-fortran-interfaces=1 --with-single-library=1 >>>> --with-shared-libraries=0 --with-scalar-type=real --with-debugging=0 >>>> --known-mpi-shared-libraries=0 --with-clib-autodetect=0 >>>> --with-fortranlib-autodetect=0 --known-memcmp-ok=1 --COPTFLAGS=-fast >>>> -Mipa=fast --FOPTFLAGS=-fast -Mipa=fast >>>> --with-blas-lapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >>>> --with-scalapack=1 >>>> --with-scalapack-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >>>> --with-scalapack-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include >>>> --with-ptscotch=1 --download-ptscotch=yes --with-blacs=1 >>>> --with-blacs-lib=/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib/libsci_pgi.a >>>> --with-blacs-include=/opt/xt-libsci/11.0.06/pgi/109/istanbul/include >>>> --with-superlu_dist=1 --download-superlu_dist=yes --with-metis=1 >>>> --download-metis=yes --with-parmetis=1 --download-parmetis=yes >>>> --with-mumps=1 --download-mumps=yes --with-hypre=1 --download-hypre >>>> --with-fftw=1 --with-fftw-dir=/opt/fftw/3.3.0.0/x86_64 --with-hdf5=1 >>>> --with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.6/pgi/109 >>>> ----------------------------------------- >>>> Libraries compiled on Wed Apr 17 13:30:40 2013 on krakenpf3 >>>> Machine characteristics: Linux-2.6.27.48-0.12.1 >>>> _1.0301.5943-cray_ss_s-x86_64-with-SuSE-11-x86_64 >>>> Using PETSc directory: >>>> /nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4 >>>> Using PETSc arch: REAL >>>> ----------------------------------------- >>>> Using C compiler: cc -fast ${COPTFLAGS} ${CFLAGS} >>>> Using Fortran compiler: ftn -fast ${FOPTFLAGS} ${FFLAGS} >>>> ----------------------------------------- >>>> Using include paths: >>>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include >>>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include >>>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/include >>>> -I/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/include >>>> -I/opt/fftw/3.3.0.0/x86_64/include-I/opt/cray/hdf5-parallel/1.8.6/pgi/109/include >>>> -I/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/include >>>> -I/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/include >>>> -I/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/include >>>> -I/opt/xt-libsci/11.0.06/pgi/109/istanbul/include -I/usr/include/alps >>>> ----------------------------------------- >>>> Using C linker: cc >>>> Using Fortran linker: ftn >>>> Using libraries: >>>> -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>>> -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>>> -lpetsc >>>> -Wl,-rpath,/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>>> -L/nics/e/sw/xt-cle3.1/petsc/3.3/cnl3.1_pgi11.9.0/petsc-3.3-p4/REAL/lib >>>> -lsuperlu_dist_3.1 -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common >>>> -lpord -lparmetis -lmetis -lptesmumps -lptscotch -lptscotcherr >>>> -Wl,-rpath,/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib >>>> -L/opt/xt-libsci/11.0.06/pgi/109/istanbul/lib -lsci_pgi -lsci_pgi -lpthread >>>> -Wl,-rpath,/opt/fftw/3.3.0.0/x86_64/lib -L/opt/fftw/3.3.0.0/x86_64/lib-lfftw3_mpi -lfftw3 -lHYPRE >>>> -L/opt/cray/portals/2.2.0-1.0301.26633.6.9.ss/lib64 >>>> -L/opt/cray/pmi/2.1.4-1.0000.8596.15.1.ss/lib64 >>>> -L/opt/cray/mpt/5.3.5/xt/seastar/mpich2-pgi/109/lib >>>> -L/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib -L/usr/lib/alps >>>> -L/opt/pgi/11.9.0/linux86-64/11.9/lib >>>> -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -ldl -L/opt/cray/atp/1.4.1/lib >>>> -lAtpSigHandler -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi >>>> -lsci_pgi_mp -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi >>>> -lportals -lalpslli -lalpsutil -lpthread >>>> -Wl,-rpath,/opt/pgi/11.9.0/linux86-64/11.9/lib -lzceh -lgcc_eh -lstdmpz >>>> -lCmpz -lpgmp -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc >>>> -lpgc -lsci_pgi -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.6/pgi/109/lib >>>> -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -ldl -lAtpSigHandler >>>> -lhdf5_hl_pgi_parallel -lhdf5_pgi_parallel -lz -lscicpp_pgi -lsci_pgi_mp >>>> -lfftw3 -lfftw3f -lmpichcxx_pgi -lmpich_pgi -lmpl -lrt -lpmi -lportals >>>> -lalpslli -lalpsutil -lpthread -lzceh -lgcc_eh -lstdmpz -lCmpz -lpgmp >>>> -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lm >>>> -lz -lz -ldl >>>> ----------------------------------------- >>>> >>>> >>>> >>>> >>>> On Tue, Jan 28, 2014 at 6:34 PM, Barry Smith wrote: >>>> >>>>> >>>>> Ok then use -log_summary and put the first solve in a separate stage >>>>> (see PetscStageRegister()) and send the results of a run back demonstrating >>>>> the slow first solver and we may be able to see what the story is. >>>>> >>>>> Barry >>>>> >>>>> On Jan 28, 2014, at 5:23 PM, David Liu wrote: >>>>> >>>>> > wow that is news to me. I always assumed that this is normal. >>>>> > >>>>> > I'm pretty certain it's not the preallocation. I'm using >>>>> MatCreateMPI, and to my knowledge I wouldn't even be able to set the values >>>>> without crashing if I didn't preallocate. (If I'm not mistaken, the setting >>>>> values slowly without preallocating is only possible if you create the Mat >>>>> using MatCreate + MatSetup). >>>>> > >>>>> > Also, I'm certain that the time is taken on the first solve, not the >>>>> setting of values, because I use the matrix in a MatMult first to get the >>>>> RHS before solving, and the MatMult happens before the long first solve. >>>>> > >>>>> > >>>>> > On Tue, Jan 28, 2014 at 5:04 PM, Barry Smith >>>>> wrote: >>>>> > >>>>> > On Jan 28, 2014, at 1:36 PM, David Liu wrote: >>>>> > >>>>> > > Hi, I'm writing an application that solves a sparse matrix many >>>>> times using Pastix. I notice that the first solves takes a very long time, >>>>> > >>>>> > Is it the first "solve" or the first time you put values into that >>>>> matrix that "takes a long time"? If you are not properly preallocating the >>>>> matrix then the initial setting of values will be slow and waste memory. >>>>> See >>>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPreallocation.html >>>>> > >>>>> > The symbolic factorization is usually much faster than a numeric >>>>> factorization so that is not the cause of the slow "first solve". >>>>> > >>>>> > Barry >>>>> > >>>>> > >>>>> > >>>>> > > while the subsequent solves are very fast. I don't fully >>>>> understand what's going on behind the curtains, but I'm guessing it's >>>>> because the very first solve has to read in the non-zero structure for the >>>>> LU factorization, while the subsequent solves are faster because the >>>>> nonzero structure doesn't change. >>>>> > > >>>>> > > My question is, is there any way to save the information obtained >>>>> from the very first solve, so that the next time I run the application, the >>>>> very first solve can be fast too (provided that I still have the same >>>>> nonzero structure)? >>>>> > >>>>> > >>>>> >>>>> >>>> >>> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Wed Jan 29 15:54:07 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 29 Jan 2014 14:54:07 -0700 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> Message-ID: <87r47qjvy8.fsf@jedbrown.org> David Liu writes: > Not too sure if there's anything I can do about this. Also, I am definately > willing to use other preconditioners. If direct solvers are expensive, what > are the cheaper alternatives? This is a vast question, a bit like asking what kind of "math" is important for "physics". If you want help, you'll have to explain more about your problem, discretization, and regime. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From daveliu at mit.edu Wed Jan 29 16:30:35 2014 From: daveliu at mit.edu (David Liu) Date: Wed, 29 Jan 2014 17:30:35 -0500 Subject: [petsc-users] reusing LU factorization? In-Reply-To: <87r47qjvy8.fsf@jedbrown.org> References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> <87r47qjvy8.fsf@jedbrown.org> Message-ID: True, also I should have read Chapter 4 of the manual before asking the question. I will try the various options there and see if I get any improvement. One thing I'm very confused about though: as I mentioned in the first post, I am solving the matrix multiple times and changing the elements, but not the nonzero structure in between solves. We've established that the numerical LU is done on the first solve only. Also, I forgot to mention that I am *not* calling KSPSetOperator before the subsequent solves, which is why the subsequent solves are so fast. According to section 4.2 of the manual, this is actually not allowed if I change anything about the matrix (which I am doing since I didn't know about this). Then why are my solves still getting the correct results that I am expecting? On Wed, Jan 29, 2014 at 4:54 PM, Jed Brown wrote: > David Liu writes: > > Not too sure if there's anything I can do about this. Also, I am > definately > > willing to use other preconditioners. If direct solvers are expensive, > what > > are the cheaper alternatives? > > This is a vast question, a bit like asking what kind of "math" is > important for "physics". If you want help, you'll have to explain more > about your problem, discretization, and regime. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Wed Jan 29 16:40:05 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 29 Jan 2014 15:40:05 -0700 Subject: [petsc-users] reusing LU factorization? In-Reply-To: References: <7C19A53A-8609-4A65-9EC0-E9CAC36AEDC4@mcs.anl.gov> <1fb3262aa88d45f096c3dcd286fc29c6@LUCKMAN.anl.gov> <87r47qjvy8.fsf@jedbrown.org> Message-ID: <87fvo6jttm.fsf@jedbrown.org> David Liu writes: > One thing I'm very confused about though: as I mentioned in the first post, > I am solving the matrix multiple times and changing the elements, but not > the nonzero structure in between solves. We've established that the > numerical LU is done on the first solve only. Also, I forgot to mention > that I am *not* calling KSPSetOperator before the subsequent solves, which > is why the subsequent solves are so fast. You are solving with the old preconditioner. You should make this explicit by calling KSPSetOperators with SAME_PRECONDITIONER. Make sure to use a Krylov method and check the norms so that you actually solve the problem you intend to (given that you're using an old preconditioner). > According to section 4.2 of the manual, this is actually not allowed if I > change anything about the matrix (which I am doing since I didn't know > about this). Then why are my solves still getting the correct results that > I am expecting? You are using GMRES. The direct solve with the old matrix is used as a preconditioner and seems to converge fairly well on the second solve (it looks like it takes 5 iterations). -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From dharmareddy84 at gmail.com Wed Jan 29 17:06:15 2014 From: dharmareddy84 at gmail.com (Dharmendar Reddy) Date: Wed, 29 Jan 2014 17:06:15 -0600 Subject: [petsc-users] SNESSetConvergenceTest In-Reply-To: <87sise4a16.fsf@jedbrown.org> References: <5FF817E1-8806-4965-8F76-B0504EF1F311@mcs.anl.gov> <82D00B91-6660-47AA-AC5B-F77CD33A2F99@mcs.anl.gov> <87sise4a16.fsf@jedbrown.org> Message-ID: Hello, Any update or fix for this issue ? Thanks Reddy On Thu, Jan 23, 2014 at 4:18 PM, Jed Brown wrote: > Dharmendar Reddy writes: > >> Hello, >> How should i fix the issue mentioned below ? > > I will fix it, but I have a couple hours of work to do first. From jed at jedbrown.org Wed Jan 29 19:14:45 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 29 Jan 2014 18:14:45 -0700 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> Message-ID: <87r47qi83e.fsf@jedbrown.org> Thomas Gross writes: > I have now compiled Petsc 3.2.0 with Prometheus and Petsc 3.4.3 with GAMG using the same compiler. Furthermore I am using the same MPI implementation for both runs. Still Prometheus is considerably faster (see attached log files). > > Prometheus: > -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -options_left > Prometheus_Large_Log_New.txt > > Gamg: > -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_Large_max_it_log_New.txt > -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_Large_Rich_Log_New.txt Can you add -mg_levels_ksp_max_it 1 to this last configuration? I see a lot of time in MatSOR. We can actually speed that up slightly with some extra caching, which may be worthwhile. We're seeing a bit lower performance in MatMult with GAMG, perhaps because we are not using block formats specialized for elasticity. Mark, what else is different? What does Prometheus do differently in setup (not the bottleneck here, but I'm curious). -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From lb2653 at columbia.edu Wed Jan 29 19:19:46 2014 From: lb2653 at columbia.edu (Luc Berger-Vergiat) Date: Wed, 29 Jan 2014 20:19:46 -0500 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: References: <52E2F2F0.1@columbia.edu> <52E6B4EE.9040001@columbia.edu> <52E7D6C8.7030605@columbia.edu> Message-ID: <52E9A8B2.9010603@columbia.edu> Hi Matt, I thought I would spend the time writing a small c example of what I am doing in my FORTRAN code so that you can more easily see what it is I am doing wrong. I attached the code and its makefile. I run the code the following arguments: -ksp_type gmres -pc_type fieldsplit -fieldsplit_0_pc_type ilu -fieldsplit_0_ksp_type preonly -fieldsplit_1_pc_type jacobi -fieldsplit_1_ksp_type preonly -ksp_view -ksp_monitor and get the following output: start=1, End=9. PetscSection with 2 fields field 0 with 1 components Process 0: ( 1) dim 1 offset 0 ( 2) dim 1 offset 0 ( 3) dim 1 offset 0 ( 4) dim 1 offset 0 ( 5) dim 0 offset 0 ( 6) dim 0 offset 0 ( 7) dim 0 offset 0 ( 8) dim 0 offset 0 field 1 with 1 components Process 0: ( 1) dim 0 offset 1 ( 2) dim 0 offset 1 ( 3) dim 0 offset 1 ( 4) dim 0 offset 1 ( 5) dim 1 offset 0 ( 6) dim 1 offset 0 ( 7) dim 1 offset 0 ( 8) dim 1 offset 0 PC flag for GetDMSplits: true 0 KSP Residual norm 0.000000000000e+00 KSP Object: 1 MPI processes type: gmres GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement GMRES: happy breakdown tolerance 1e-30 maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 1 MPI processes type: fieldsplit FieldSplit with MULTIPLICATIVE composition: total splits = 2 Solver info for each split is in the following KSP objects: Split number 0 Defined by IS KSP Object: (fieldsplit_Field_0_) 1 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using NONE norm type for convergence test PC Object: (fieldsplit_Field_0_) 1 MPI processes type: ilu ILU: out-of-place factorization 0 levels of fill tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot matrix ordering: natural factor fill ratio given 1, needed 1 Factored matrix follows: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 package used to perform factorization: petsc total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines Split number 1 Defined by IS KSP Object: (fieldsplit_Field_1_) 1 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using NONE norm type for convergence test PC Object: (fieldsplit_Field_1_) 1 MPI processes type: ilu ILU: out-of-place factorization 0 levels of fill tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot matrix ordering: natural factor fill ratio given 1, needed 1 Factored matrix follows: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 package used to perform factorization: petsc total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=0, cols=0 total: nonzeros=0, allocated nonzeros=0 total number of mallocs used during MatSetValues calls =0 not using I-node routines linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=8, cols=8 total: nonzeros=64, allocated nonzeros=160 total number of mallocs used during MatSetValues calls =8 using I-node routines: found 2 nodes, limit used is 5 The solution to this problem is: Vector Object: 1 MPI processes type: seq 0 0 0 0 0 0 0 0 WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! Option left: name:-fieldsplit_0_ksp_type value: preonly Option left: name:-fieldsplit_0_pc_type value: ilu Option left: name:-fieldsplit_1_ksp_type value: preonly Option left: name:-fieldsplit_1_pc_type value: jacobi when I run it with the more simple arguements: -ksp_type gmres -pc_type jacobi -ksp_view -ksp_monitor I get the following output: start=1, End=9. PetscSection with 2 fields field 0 with 1 components Process 0: ( 1) dim 1 offset 0 ( 2) dim 1 offset 0 ( 3) dim 1 offset 0 ( 4) dim 1 offset 0 ( 5) dim 0 offset 0 ( 6) dim 0 offset 0 ( 7) dim 0 offset 0 ( 8) dim 0 offset 0 field 1 with 1 components Process 0: ( 1) dim 0 offset 1 ( 2) dim 0 offset 1 ( 3) dim 0 offset 1 ( 4) dim 0 offset 1 ( 5) dim 1 offset 0 ( 6) dim 1 offset 0 ( 7) dim 1 offset 0 ( 8) dim 1 offset 0 0 KSP Residual norm 4.759858191165e+00 1 KSP Residual norm 2.344421567248e+00 2 KSP Residual norm 3.208390394507e-01 3 KSP Residual norm 7.171256210359e-02 4 KSP Residual norm 1.301032901980e-02 5 KSP Residual norm 1.104121978197e-15 KSP Object: 1 MPI processes type: gmres GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement GMRES: happy breakdown tolerance 1e-30 maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000 left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 1 MPI processes type: jacobi linear system matrix = precond matrix: Matrix Object: 1 MPI processes type: seqaij rows=8, cols=8 total: nonzeros=64, allocated nonzeros=160 total number of mallocs used during MatSetValues calls =8 using I-node routines: found 2 nodes, limit used is 5 The solution to this problem is: Vector Object: 1 MPI processes type: seq -0.977778 -0.0444444 -0.844444 -0.327778 3 1 1.5 3 It is obvious that something goes wrong in the fieldsplit, I'm just clueless to what it is. I think that everything is setup correctly but I'm missing something to get the KSP to recognize my splits... Thanks for your help. Best, Luc On 01/28/2014 11:20 AM, Matthew Knepley wrote: > On Tue, Jan 28, 2014 at 10:11 AM, Luc Berger-Vergiat > > wrote: > > What I don't really understand is why the size of all the sub > fields is zero? > As you can see all the matrix object in my fieldsplit > preconditioner have total:nonzeros=0, allocated nonzeros=0. > > This seems strange since I issued the following command: > //call DMSetDefaultSection(FSDM, FSSection, ierr) > > > That section looks like you never called PetscSectionSetUp(). > > Matt > > with a the following FSSection: > PetscSection with 4 fields > field 0 with 1 components > Process 0: > ( 0) dim 0 offset 0 > ( 1) dim 1 offset 0 > ( 2) dim 0 offset 0 > ( 3) dim 0 offset 0 > ( 4) dim 1 offset 0 > ( 5) dim 0 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > ( 9) dim 0 offset 0 > ( 10) dim 0 offset 0 > ( 11) dim 0 offset 0 > ( 12) dim 0 offset 0 > ( 13) dim 0 offset 0 > ( 14) dim 0 offset 0 > ( 15) dim 0 offset 0 > field 1 with 1 components > Process 0: > ( 0) dim 1 offset 0 > ( 1) dim 0 offset 1 > ( 2) dim 1 offset 0 > ( 3) dim 1 offset 0 > ( 4) dim 0 offset 1 > ( 5) dim 1 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > ( 9) dim 0 offset 0 > ( 10) dim 0 offset 0 > ( 11) dim 0 offset 0 > ( 12) dim 0 offset 0 > ( 13) dim 0 offset 0 > ( 14) dim 0 offset 0 > ( 15) dim 0 offset 0 > field 2 with 1 components > Process 0: > ( 0) dim 0 offset 1 > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 0 offset 1 > ( 6) dim 1 offset 0 > ( 7) dim 1 offset 0 > ( 8) dim 1 offset 0 > ( 9) dim 1 offset 0 > ( 10) dim 1 offset 0 > ( 11) dim 1 offset 0 > ( 12) dim 0 offset 0 > ( 13) dim 0 offset 0 > ( 14) dim 0 offset 0 > ( 15) dim 0 offset 0 > field 3 with 1 components > Process 0: > ( 0) dim 0 offset 1 > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 0 offset 1 > ( 6) dim 0 offset 1 > ( 7) dim 0 offset 1 > ( 8) dim 0 offset 1 > ( 9) dim 0 offset 1 > ( 10) dim 0 offset 1 > ( 11) dim 0 offset 1 > ( 12) dim 1 offset 0 > ( 13) dim 1 offset 0 > ( 14) dim 1 offset 0 > ( 15) dim 1 offset 0 > > I thought that by using DMSetDefaultSection() I would be done > setting the fields and that the fieldsplit would detect that > section and use it to construct the splits. > > Should I use another command to tell the PC to use the DM section? > > Best, > Luc > > On 01/28/2014 10:25 AM, Matthew Knepley wrote: >> On Mon, Jan 27, 2014 at 1:35 PM, Luc Berger-Vergiat >> > wrote: >> >> Thanks Matt, >> this indeed setting the number of fields earlier solve my issue! >> >> I have now made some progress getting my DM setup but I am >> having troubles setting my splitfield options. >> I ran my problem with the -ksp_view option to see what is >> going on and I guess that somehow the section that I define >> in my DM is not used by the preconditioner to split the fields. >> Here is the output of PETSc >> >> KSP Object: 1 MPI processes >> type: gmres >> GMRES: restart=30, using Classical (unmodified) >> Gram-Schmidt Orthogonalization with no iterative refinement >> GMRES: happy breakdown tolerance 1e-30 >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-08, absolute=1e-16, divergence=1e+16 >> left preconditioning >> using PRECONDITIONED norm type for convergence test >> PC Object: 1 MPI processes >> type: fieldsplit >> FieldSplit with MULTIPLICATIVE composition: total splits = 4 >> Solver info for each split is in the following KSP objects: >> Split number 0 Defined by IS >> >> >> There are 4 splits here and they are defined by an IS. Why do you >> think that is not what you asked for? >> >> Thanks, >> >> Matt >> >> KSP Object: (fieldsplit_Field_0_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, >> divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_0_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during >> MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> Split number 1 Defined by IS >> KSP Object: (fieldsplit_Field_1_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, >> divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_1_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during >> MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> Split number 2 Defined by IS >> KSP Object: (fieldsplit_Field_2_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, >> divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_2_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during >> MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> Split number 3 Defined by IS >> KSP Object: (fieldsplit_Field_3_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, >> divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_3_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during >> MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=16, cols=16 >> total: nonzeros=256, allocated nonzeros=256 >> total number of mallocs used during MatSetValues calls =0 >> using I-node routines: found 4 nodes, limit used is 5 >> >> I am also attaching part of my code which I use to generate >> the DM, the KSP and the PC objects. >> >> Best, >> Luc >> >> On 01/25/2014 10:31 AM, Matthew Knepley wrote: >>> On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat >>> > wrote: >>> >>> Hi all, >>> I want to use PETSc as a solver for an FEM problem: >>> modelization of shear bands using a 4 fields mixed >>> formulation. >>> >>> So far I am just trying to set up a two fields in a >>> Petsc section, assign dof too each field and then set up >>> the section to pass it to a DM. I am taking this >>> approach because in general I want for fieldsplit to >>> work purely on the algebraic level without knowledge of >>> boundary conditions or geometry. >>> >>> As of now I have issues when I try to assign a point and >>> its associated degree of freedom to a field using: >>> PetscSectionSetFieldDof. >>> Is this the correct way to associate a dof/point to a field? >>> >>> >>> You have to set the number of fields before the chart. I am >>> updating the docs. >>> >>> Thanks, >>> >>> Matt >>> >>> I attached an example code and its makefile. >>> >>> -- >>> Best, >>> Luc >>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin >>> their experiments is infinitely more interesting than any >>> results to which their experiments lead. >>> -- Norbert Wiener >> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to >> which their experiments lead. >> -- Norbert Wiener > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: DMshell_ex1.c Type: text/x-csrc Size: 4367 bytes Desc: not available URL: -------------- next part -------------- CFLAGS = FFLAGS = CPPFLAGS = FPPFLAGS = LOCDIR = /home/luc/research/simulations/Petsc_DM/ EXAMPLESC = DMshell_ex1.c MANSEC = DM SUBMANSEC = DMDA include ${PETSC_DIR}/conf/variables include ${PETSC_DIR}/conf/rules ex1: DMshell_ex1.o chkopts -${CLINKER} -o ex1 DMshell_ex1.o ${PETSC_DM_LIB} ${RM} -f DMshell_ex1.o From danyang.su at gmail.com Wed Jan 29 19:46:14 2014 From: danyang.su at gmail.com (Danyang Su) Date: Wed, 29 Jan 2014 17:46:14 -0800 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP In-Reply-To: <52E9715E.20207@mcs.anl.gov> References: <52E94835.6080207@gmail.com> <52E9715E.20207@mcs.anl.gov> Message-ID: <52E9AEE6.90408@gmail.com> Hi Karli, "--with-threadcomm --with-openmp" can work when configure PETSc with MPI-OpenMP. Sorry for making a mistake before. The program can be compiled but I got a new error while running my program. Error: Attempting to use an MPI routine before initializing MPICH This error occurs when calling MPI_SCATTERV. I have already called PetscInitialize, and MPI_BCAST, which is just before the calling of MPI_SCATTERV, can also work without throwing error. When PETSc is configured without openmp, there is no error in this section. Thanks and regards, Danyang On 29/01/2014 1:23 PM, Karl Rupp wrote: > Hi Danyang, > > PETSc is supposed to work with the MPI-OpenMP hybridization just as > you request it. > > > I tried to configure PETSc with both MPI and OpenMP enabled, but > failed. > > Please provide details on why it failed. Please send configure.log and > make.log to petsc-maint. > > >> BTW: I have also tried to use "PETSc for WINDOWS2.0" >> (http://www.msic.ch/Software). Both the OpenMP instructions and PETSc >> solver (MPI) can work well, but the solver speedup is not as significant >> as compiling in CYGWIN with PETSc 3.4.3. Usually the speedup of solver >> is 1.5 times slower. > > Note that due to the saturation of the memory links you have to be > careful with what you define as 'speedup' and how you compare > execution times. Also, thread affinities become pretty important if > you are on a NUMA machine. > >> Is it possible to configure PETSc with Hybrid MPI-OPenMP? How? > > --with-threadcomm --with-openmp should suffice. > > Best regards, > Karli -------------- next part -------------- make[1]: Entering directory `/cygdrive/c/cygwin/packages/petsc-dev' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems To subscribe to the PETSc announcement list, send mail to majordomo at mcs.anl.gov with the message: subscribe petsc-announce To subscribe to the PETSc users mailing list, send mail to majordomo at mcs.anl.gov with the message: subscribe petsc-users ========================================== On Wed, Jan 29, 2014 4:00:37 PM on nwmop Machine characteristics: CYGWIN_NT-6.1-WOW64 nwmop 1.7.22(0.268/5/3) 2013-07-22 17:06 i686 Cygwin ----------------------------------------- Using PETSc directory: /cygdrive/c/cygwin/packages/petsc-dev Using PETSc arch: arch-mswin-c-optimized ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 4 PETSC_VERSION_SUBMINOR 3 PETSC_VERSION_PATCH 0 PETSC_VERSION_DATE "Nov, 04, 2013" PETSC_VERSION_GIT "1beacf92f04482972e84431be0032cb960d262c7" PETSC_VERSION_DATE_GIT "2013-11-01 14:59:20 -0500" PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --download-f-blas-lapack --with-threadcomm --with-openmp --useThreads=0 Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX 65535 #define S_ISREG(a) (((a)&_S_IFMT) == _S_IFREG) #define W_OK 02 #define X_OK 01 #define R_OK 04 #define _USE_MATH_DEFINES 1 #define S_ISDIR(a) (((a)&_S_IFMT) == _S_IFDIR) #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_USE_WINDOWS_GRAPHICS 1 #define PETSC_UINTPTR_T uintptr_t #define PETSC_HAVE_OPENMP 1 #define PETSC_DEPRECATED(why) #define PETSC_HAVE_WINDOWS_H 1 #define PETSC_REPLACE_DIR_SEPARATOR '/' #define PETSC_HAVE_SETLASTERROR 1 #define PETSC_HAVE_MPI 1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_HAVE_GETPROCADDRESS 1 #define PETSC_LIB_DIR "/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib" #define PETSC_HAVE_LARGE_INTEGER_U 1 #define PETSC_SLSUFFIX "" #define PETSC_FUNCTION_NAME_CXX __FUNCTION__ #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_UNUSED #define PETSC_CANNOT_START_DEBUGGER 1 #define PETSC_HAVE_FREELIBRARY 1 #define PETSC_FUNCTION_NAME_C __FUNCTION__ #define PETSC_HAVE_GETCOMPUTERNAME 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_HAVE_O_BINARY 1 #define PETSC_USE_MICROSOFT_TIME 1 #define PETSC_DIR_SEPARATOR '\\' #define PETSC_HAVE_LOADLIBRARY 1 #define PETSC_PATH_SEPARATOR ';' #define PETSC_HAVE_GETLASTERROR 1 #define PETSC__BSD_SOURCE 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_HAVE_GET_USER_NAME 1 #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_DIRECT_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_DOS_H 1 #define PETSC_HAVE_MEMORY_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_FORTRAN_CAPS 1 #define PETSC_C_STATIC_INLINE static __inline #define PETSC_USING_F90 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_C_RESTRICT __restrict #define PETSC_CXX_RESTRICT __restrict #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBWS2_32 1 #define PETSC_HAVE_LIBFMPICH2G 1 #define PETSC_HAVE_LIBMPI 1 #define PETSC_HAVE_LIBUSER32 1 #define PETSC_HAVE_LIBGDI32 1 #define PETSC_HAVE_LIBADVAPI32 1 #define PETSC_HAVE_LIBFLAPACK 1 #define PETSC_HAVE_LIBFBLAS 1 #define PETSC_HAVE_LIBKERNEL32 1 #define PETSC_HAVE_LIBFMPICH2 1 #define PETSC_ARCH "arch-mswin-c-optimized" #define PETSC_DIR "/cygdrive/c/cygwin/packages/petsc-dev" #define HAVE_GZIP 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_MISSING_DREAL 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE___INT64 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 4 #define PETSC_USE_FORTRANKIND 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_uid_t int #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_gid_t int #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE__LSEEK 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE__GETCWD 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE__SLEEP 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE__VSNPRINTF 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_STRICMP 1 #define PETSC_HAVE__SNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE__ACCESS 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_BLASLAPACK_CAPS 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE__ISNAN 1 #define PETSC_HAVE__FINITE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_MISSING_SIGUSR2 1 #define PETSC_MISSING_SIGURG 1 #define PETSC_MISSING_SIGPIPE 1 #define PETSC_MISSING_SIGHUP 1 #define PETSC_MISSING_SIGSTOP 1 #define PETSC_MISSING_SIGSYS 1 #define PETSC_MISSING_SIGCONT 1 #define PETSC_HAVE_WSAGETLASTERROR 1 #define PETSC_HAVE_CLOSESOCKET 1 #define PETSC_MISSING_SIGTSTP 1 #define PETSC_MISSING_SIGCHLD 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_MISSING_SIGUSR1 1 #define PETSC_MISSING_SIGTRAP 1 #define PETSC_MISSING_SIGQUIT 1 #define PETSC_MISSING_SIGBUS 1 #define PETSC_HAVE_WINSOCK2_H 1 #define PETSC_MISSING_SIGALRM 1 #define PETSC_NEEDS_UTYPE_TYPEDEFS 1 #define PETSC_MISSING_SIGKILL 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_THREADCOMM_ACTIVE 1 ----------------------------------------- Using C/C++ compile: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -MT -wd4996 -Z7 -openmp -I/cygdrive/c/cygwin/packages/petsc-dev/include -I/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/include -I/cygdrive/c/Program\ Files/MPICH2/include Using Fortran compile: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -MT -Z7 -fpp -openmp -I/cygdrive/c/cygwin/packages/petsc-dev/include -I/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/include -I/cygdrive/c/Program\ Files/MPICH2/include ----------------------------------------- Using C/C++ linker: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Using C/C++ flags: -openmp -openmp -MT -wd4996 -Z7 -openmp Using Fortran linker: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort Using Fortran flags: -openmp -openmp -MT -Z7 -fpp -openmp ----------------------------------------- Using libraries: -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lpetsc -lflapack -lfblas /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib ------------------------------------------ Using mpiexec: /cygdrive/c/Program\ Files/MPICH2/bin/mpiexec ========================================== Building PETSc using GNU Make with 10 build threads ========================================== make[2]: Entering directory `/cygdrive/c/cygwin/packages/petsc-dev' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/cygdrive/c/cygwin/packages/petsc-dev' ========================================= make[1]: Leaving directory `/cygdrive/c/cygwin/packages/petsc-dev' Now to check if the libraries are working do: make PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev PETSC_ARCH=arch-mswin-c-optimized test ========================================= -------------- next part -------------- Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Wed Jan 29 15:17:29 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --download-f-blas-lapack --with-threadcomm --with-openmp --useThreads=0 Working directory: /cygdrive/c/cygwin/packages/petsc-dev Machine platform: ('CYGWIN_NT-6.1-WOW64', 'nwmop', '1.7.22(0.268/5/3)', '2013-07-22 17:06', 'i686', '') Python version: 2.7.3 (default, Dec 18 2012, 13:50:09) [GCC 4.5.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gdb...not found Checking for program /cygdrive/c/Windows/system32/gdb...not found Checking for program /cygdrive/c/Windows/gdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gdb...not found Checking for program /cygdrive/c/MinGW/bin/gdb...found Defined make macro "GDB" to "/cygdrive/c/MinGW/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dbx...not found Checking for program /cygdrive/c/Windows/system32/dbx...not found Checking for program /cygdrive/c/Windows/dbx...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dbx...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dbx...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dbx...not found Checking for program /cygdrive/c/MinGW/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dbx...not found Checking for program /home/dsu/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/xdb...not found Checking for program /cygdrive/c/Windows/system32/xdb...not found Checking for program /cygdrive/c/Windows/xdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/xdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/xdb...not found Checking for program /cygdrive/c/MinGW/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/xdb...not found Checking for program /home/dsu/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dsymutil...not found Checking for program /cygdrive/c/Windows/system32/dsymutil...not found Checking for program /cygdrive/c/Windows/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dsymutil...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dsymutil...not found Checking for program /cygdrive/c/MinGW/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dsymutil...not found Checking for program /home/dsu/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/languages.py:28) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/languages.py:37) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:37) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/autoreconf...not found Checking for program /cygdrive/c/Windows/system32/autoreconf...not found Checking for program /cygdrive/c/Windows/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/Wbem/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/autoreconf...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/autoreconf...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/autoreconf...not found Checking for program /cygdrive/c/MinGW/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/autoreconf...not found Checking for program /home/dsu/autoreconf...not found ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-eHpoqW All intermediate test results are stored in /tmp/petsc-eHpoqW/config.programs Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-eHpoqW/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-eHpoqW/config.programs/diff1" "/tmp/petsc-eHpoqW/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/dsu/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureGit from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/git...not found Checking for program /cygdrive/c/Windows/system32/git...not found Checking for program /cygdrive/c/Windows/git...not found Checking for program /cygdrive/c/Windows/System32/Wbem/git...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/git...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/git...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/git...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/git...not found Checking for program /cygdrive/c/MinGW/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/git...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/git...not found Checking for program /home/dsu/git...not found ================================================================================ TEST configureMercurial from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.5.2) ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/cvs...not found Checking for program /cygdrive/c/Windows/system32/cvs...not found Checking for program /cygdrive/c/Windows/cvs...not found Checking for program /cygdrive/c/Windows/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/cvs...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/cvs...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/cvs...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/cvs...not found Checking for program /cygdrive/c/MinGW/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/cvs...not found Checking for program /home/dsu/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/svn...not found Checking for program /cygdrive/c/Windows/system32/svn...not found Checking for program /cygdrive/c/Windows/svn...not found Checking for program /cygdrive/c/Windows/System32/Wbem/svn...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/svn...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/svn...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/svn...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/svn...not found Checking for program /cygdrive/c/MinGW/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.8.3 ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Nov, 04, 2013" #define PETSC_VERSION_GIT "1beacf92f04482972e84431be0032cb960d262c7" #define PETSC_VERSION_DATE_GIT "2013-11-01 14:59:20 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/cygdrive/c/cygwin/packages/petsc-dev" Defined "DIR" to ""/cygdrive/c/cygwin/packages/petsc-dev"" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscdir.py:77) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:77) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST printEnvVariables from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1500) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1500) **** printenv **** BIN_ROOT=C:\Program Files (x86)\Intel\Composer XE 2013\bin\ LIB=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\lib\x64;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\lib\intel64;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64; VS100COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\ COMPUTERNAME=NWMOP SCRIPT_NAME=compilervars_arch.bat ADVISOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Advisor XE 2013\.\ !C:=C:\Program Files (x86)\Intel\Composer XE 2013 WIN_TITLE_ARCH=Intel(R) 64 PRODUCT_NAME=Intel Composer XE 2013 INFOPATH=/usr/local/info:/usr/share/info:/usr/info: SHELL=/bin/bash CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files INTEL_LICENSE_FILE=C:\Program Files (x86)\Common Files\Intel\Licenses FrameworkVersion64=v4.0.30319 MANPATH=/usr/local/man:/usr/share/man:/usr/man: FrameworkDir=C:\Windows\Microsoft.NET\Framework64 ARCH_PATH_MPI=em64t KMP_AFFINITY=verbose,granularity=thread,compact COMSPEC=C:\Windows\system32\cmd.exe MSMPI_LIB64=C:\Program Files\Microsoft HPC Pack 2008 R2\Lib\amd64\ ARCH_PATH=intel64 TARGET_ARCH=intel64 MOZ_PLUGIN_PATH=C:\Program Files (x86)\PDFlite\ HOMEDRIVE=C: MKLROOT=C:\Program Files (x86)\Intel\Composer XE 2013\mkl FrameworkVersion=v4.0.30319 SYSTEMDRIVE=C: HOSTNAME=nwmop PETSC_ARCH=arch-mswin-c-optimized PROCESSOR_LEVEL=6 OS=Windows_NT C_INCLUDE_PATH=C:\MinGW\include PRODUCT_NAME_FULL=Intel(R) Composer XE 2013 Update 5 (package 198) TARGET_VS=vs2010 INTEL_DEV_REDIST=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\ IFORT_COMPILER14=C:\Program Files (x86)\Intel\Composer XE 2013 SP1\ CommandPromptType=Native USER=dsu IFORT_COMPILER13=C:\Program Files (x86)\Intel\Composer XE 2013\ SYSTEMROOT=C:\Windows PS1=\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ tmp=C:\Users\dsu\AppData\Local\Temp TEMP=/tmp SHLVL=1 VISUALSVN_SERVER=C:\Program Files (x86)\VisualSVN Server\ PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev HOMEPATH=\Users\dsu WindowsSdkDir=C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\ ROOT=C:\Program Files (x86)\Intel\Composer XE 2013 LOGONSERVER=\\NWMOP C_TARGET_ARCH=intel64 MSVS_VAR_SCRIPT="C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\..\..\VC\vcvarsall.bat" PRINTER=HP LaserJet P1505n INSPECTOR_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ SESSIONNAME=Console INCLUDE=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\include;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\include; PATH_PHAST=C:\Program Files (x86)\USGS\phast-2.4.1-7430\\bin APPDATA=C:\Users\dsu\AppData\Roaming OMP_NUM_THREADS=4 VBOX_INSTALL_PATH=C:\Program Files\Oracle\VirtualBox\ TMP=/tmp PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ USERDOMAIN=nwmop COMMONPROGRAMFILES=C:\Program Files (x86)\Common Files HOME=/home/dsu MIC_LD_LIBRARY_PATH=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\compiler\lib\mic LANG=en_US.UTF-8 LIBRARY_PATH=C:\MinGW\lib ProgramData=C:\ProgramData PROCESSOR_ARCHITECTURE=x86 ALLUSERSPROFILE=C:\ProgramData _=./configure BUNDLE_NAME=Intel(R) Parallel Studio XE 2013 ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=dsu FrameworkDIR64=C:\Windows\Microsoft.NET\Framework64 PROMPT=$P$G PETSC_DIR2=/cygdrive/c/cygwin/packages/petsc-3.4.3 PETSC_ARCH2=arch-mswin-c-debug INSPECTOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC CommonProgramW6432=C:\Program Files\Common Files WINDIR=C:\Windows Framework35Version=v3.5 temp=C:\Users\dsu\AppData\Local\Temp Platform=X64 NUMBER_OF_PROCESSORS=12 PROCESSOR_ARCHITEW6432=AMD64 WIN_TITLE=Intel Composer XE 2013 Intel(R) 64 Visual Studio 2010 TARGET_VS_ARCH=amd64 MSMPI_INC=C:\Program Files\Microsoft HPC Pack 2008 R2\Inc\ PUBLIC=C:\Users\Public USERPROFILE=C:\Users\dsu LIBPATH=C:\Windows\Microsoft.NET\Framework64\v4.0.30319;C:\Windows\Microsoft.NET\Framework64\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64; PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 45 Stepping 7, GenuineIntel PROGRAMFILES=C:\Program Files (x86) PROCESSOR_REVISION=2d07 PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/TEC100/BIN:/cygdrive/c/Program Files/MPICH2/bin:/cygdrive/c/Program Files (x86)/MPICH2/bin:/cygdrive/c/Program Files (x86)/CMake 2.8/bin:/cygdrive/c/Program Files/doxygen/bin:/cygdrive/c/Program Files (x86)/Graphviz 2.28/bin:/cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin:/cygdrive/c/MinGW/bin:/cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/VisualSVN/bin:/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt TERM=cygwin TZ=America/Vancouver VSINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\ VTUNE_AMPLIFIER_XE_2013_DIR=C:\Program Files (x86)\Intel\VTune Amplifier XE 2013\ LOCALAPPDATA=C:\Users\dsu\AppData\Local WIN_TITLE_VS=Visual Studio 2010 TEC100HOME=C:\Program Files\TEC100 FP_NO_HOST_CHECK=NO OLDPWD=/home/dsu PWD=/cygdrive/c/cygwin/packages/petsc-dev MSMPI_LIB32=C:\Program Files\Microsoft HPC Pack 2008 R2\Lib\i386\ VCINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1507) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1472) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1491) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1491) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:400) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:400) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:410) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:410) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:526) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-eHpoqW/config.setCompilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:561) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:561) Locate a functional C preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.SET\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:595) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:595) Locate a functional CUDA compiler Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:633) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:633) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:736) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:736) Locate a functional Cxx compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXX" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:774) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:774) Locate a functional Cxx preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXXCPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\conffix.h" extern "C" { } #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.SET\\conftest.cc" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\cstdlib" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" namespace vc_attributes { #line 55 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum YesNoMaybe { No = 0x0fff0001, Maybe = 0x0fff0010, Yes = 0x0fff0100 }; typedef enum YesNoMaybe YesNoMaybe; enum AccessType { NoAccess = 0, Read = 1, Write = 2, ReadWrite = 3 }; typedef enum AccessType AccessType; [repeatable] [source_annotation_attribute( Parameter )] struct PreAttribute { PreAttribute(); #line 85 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostAttribute { PostAttribute(); #line 116 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( Parameter )] struct FormatStringAttribute { FormatStringAttribute(); #line 147 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [repeatable] [source_annotation_attribute( ReturnValue )] struct InvalidCheckAttribute { InvalidCheckAttribute(); #line 159 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" long Value; }; [source_annotation_attribute( Method )] struct SuccessAttribute { SuccessAttribute(); #line 169 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreBoundAttribute { PreBoundAttribute(); #line 180 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostBoundAttribute { PostBoundAttribute(); #line 190 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreRangeAttribute { PreRangeAttribute(); #line 200 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostRangeAttribute { PostRangeAttribute(); #line 212 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" }; #line 222 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef ::vc_attributes::YesNoMaybe SA_YesNoMaybe; const ::vc_attributes::YesNoMaybe SA_Yes = ::vc_attributes::Yes; const ::vc_attributes::YesNoMaybe SA_No = ::vc_attributes::No; const ::vc_attributes::YesNoMaybe SA_Maybe = ::vc_attributes::Maybe; typedef ::vc_attributes::AccessType SA_AccessType; const ::vc_attributes::AccessType SA_NoAccess = ::vc_attributes::NoAccess; const ::vc_attributes::AccessType SA_Read = ::vc_attributes::Read; const ::vc_attributes::AccessType SA_Write = ::vc_attributes::Write; const ::vc_attributes::AccessType SA_ReadWrite = ::vc_attributes::ReadWrite; typedef ::vc_attributes::PreAttribute SA_Pre; typedef ::vc_attributes::PostAttribute SA_Post; typedef ::vc_attributes::FormatStringAttribute SA_FormatString; typedef ::vc_attributes::InvalidCheckAttribute SA_InvalidCheck; typedef ::vc_attributes::SuccessAttribute SA_Success; typedef ::vc_attributes::PreBoundAttribute SA_PreBound; typedef ::vc_attributes::PostBoundAttribute SA_PostBound; typedef ::vc_attributes::PreRangeAttribute SA_PreRange; typedef ::vc_attributes::PostRangeAttribute SA_PostRange; #line 266 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:883) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:883) Locate a functional Fortran compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "FC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:902) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Make sure fortran comment "!" works Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:965) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:965) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -PIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting C linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -fPIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting C linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected C compiler flag -fPIC because linker cannot handle it Trying C compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -KPIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting C linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Trying C compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -qpic /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting C linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected C compiler flag -qpic because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -PIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting Cxx linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -fPIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting Cxx linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected Cxx compiler flag -fPIC because linker cannot handle it Trying Cxx compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -KPIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting Cxx linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Trying Cxx compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -qpic /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting Cxx linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected Cxx compiler flag -qpic because linker cannot handle it Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -PIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/PIC' Rejecting FC linker flag -PIC due to ifort: command line warning #10006: ignoring unknown option '/PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -fPIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejecting FC linker flag -fPIC due to ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejected FC compiler flag -fPIC because linker cannot handle it Trying FC compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -KPIC /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejecting FC linker flag -KPIC due to ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Trying FC compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -qpic /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/qpic' Rejecting FC linker flag -qpic due to ifort: command line warning #10006: ignoring unknown option '/qpic' Rejected FC compiler flag -qpic because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- c Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/tmp/petsc-eHpoqW/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/tmp/petsc-eHpoqW/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar cr /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/tmp/petsc-eHpoqW/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/tmp/petsc-eHpoqW/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar -X64 cr /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar -X64 cr /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar -X64 cr /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a -P512" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib -a -P512 /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 25600 Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a /tmp/petsc-eHpoqW/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-eHpoqW/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/tmp/petsc-eHpoqW/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/tmp/petsc-eHpoqW/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "-a" Defined make macro "AR_LIB_SUFFIX" to "lib" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1208) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1208) Check that the linker can produce shared libraries Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -shared /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/libconftest.so /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-dynamic'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -dynamic /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-dynamic' Rejecting C linker flag -dynamic due to cl : Command line warning D9002 : ignoring unknown option '-dynamic' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/libconftest.so /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-qmkshrobj'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -qmkshrobj /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Rejecting C linker flag -qmkshrobj due to cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/libconftest.so /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -shared /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/libconftest.dll /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib using flags [] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-eHpoqW/config.setCompilers/libconftest.lib /tmp/petsc-eHpoqW/config.setCompilers/conftest.o ; /usr/bin/true /tmp/petsc-eHpoqW/config.setCompilers/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/tmp/petsc-eHpoqW/config.setCompilers -lconftest Using shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib with flags [] and library extension lib Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1286) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1286) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying C linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-rpath, Trying C linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting C linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected C linker flag -R Trying C linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting C linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected C linker flag -rpath Trying C linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-R, Popping language C Pushing language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying Cxx linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-rpath, Trying Cxx linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting Cxx linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected Cxx linker flag -R Trying Cxx linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting Cxx linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected Cxx linker flag -rpath Trying Cxx linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-R, Popping language Cxx Pushing language FC Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying FC linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-rpath, Trying FC linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting FC linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejected FC linker flag -R Trying FC linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 40192 stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting FC linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected FC linker flag -rpath Trying FC linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-R, Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1370) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1370) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-eHpoqW/config.headers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Dynamic loading disabled since dlfcn.h was missing ================================================================================ TEST output from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1416) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Output module data as defines and substitutions Substituting "CC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -MT Trying C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Z7 Popping language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -MT Trying Cxx compiler flag -GR Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -GR Trying Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Z7 Trying Cxx compiler flag -Zm200 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Zm200 Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nIntel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Z7 Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/arch.py:32) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:32) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-mswin-c-optimized"" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:51) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:51) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:90) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:90) Checks whether dynamic loading is available (with dlfcn.h and libdl) ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-eHpoqW/config.compilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static __inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static __inline Popping language C Defined "C_STATIC_INLINE" to "static __inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ================================================================================ TEST checkCLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -v -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' Popping language C compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Libraries needed to link C code with another linker: [] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -MMD -MP /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -MMD /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD Trying C compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -xMMD /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -qmakedep=gcc /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -MD /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -MD because no dependency file (/tmp/petsc-eHpoqW/config.setCompilers/conftest.d) was generated Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD -MP /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD Trying Cxx compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -xMMD /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -qmakedep=gcc /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MD /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected Cxx compiler flag -MD because no dependency file (/tmp/petsc-eHpoqW/config.setCompilers/conftest.d) was generated Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -MMD -MP /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -MMD /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -xMMD /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xMMD' Successful compile: Source: program main end Rejecting compiler flag -xMMD due to ifort: command line warning #10006: ignoring unknown option '/xMMD' Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -qmakedep=gcc /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Successful compile: Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -MD /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10121: overriding '/MT' with '/MD' Successful compile: Source: program main end Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-eHpoqW/config.setCompilers/conftest.d) was generated Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -+ /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -+ due to nonzero status from link Rejecting compiler flag -+ due to cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -x cxx -tlocal /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~2\cxx Possible ERROR while running compiler: exit code 32512 stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~2\cxxSource: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -x cxx -tlocal due to nonzero status from link Rejecting compiler flag -x cxx -tlocal due to Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~2\cxx PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -Kc++ /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -Kc++ due to nonzero status from link Rejecting compiler flag -Kc++ due to cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag -TP Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -v -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg LINK compilers: Unknown arg LINK compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg found compilers: Unknown arg found compilers: Checking arg or compilers: Unknown arg or compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg built compilers: Unknown arg built compilers: Checking arg by compilers: Unknown arg by compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg last compilers: Unknown arg last compilers: Checking arg incremental compilers: Unknown arg incremental compilers: Checking arg link; compilers: Unknown arg link; compilers: Checking arg performing compilers: Unknown arg performing compilers: Checking arg full compilers: Unknown arg full compilers: Checking arg link compilers: Unknown arg link compilers: Libraries needed to link Cxx code with another linker: [] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.o /tmp/petsc-eHpoqW/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type unchanged with code void d1chk(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.o /tmp/petsc-eHpoqW/config.compilers/confc.o stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type caps with code void D1CHK(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void D1CHK(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.o /tmp/petsc-eHpoqW/config.compilers/confc.o Popping language FC compilers: Fortran name mangling is caps Defined "HAVE_FORTRAN_CAPS" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-eHpoqW/config.compilers/conftest.o /tmp/petsc-eHpoqW/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -cpp /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -cpp due to nonzero status from link Rejecting compiler flag -cpp due to ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -xpp=cpp /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -xpp=cpp due to nonzero status from link Rejecting compiler flag -xpp=cpp due to ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -F /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line error: option '/F' is ambiguous Possible ERROR while running compiler: exit code 256 stdout: ifort: command line error: option '/F' is ambiguousSource: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -F due to nonzero status from link Rejecting compiler flag -F due to ifort: command line error: option '/F' is ambiguous PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -Cpp /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -Cpp due to nonzero status from link Rejecting compiler flag -Cpp due to ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag -fpp Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp -DTesting /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -V stdout: ifort: command line error: no files specified; for help type "ifort /help" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -v -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/v' C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mGLOB_microsoft_version=1600 "-mGLOB_options_string=-v -MT -Z7 -fpp -nologo -FeC:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 -mP3OPT_defaultlibs_omit=FALSE -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF -mP3OPT_defaultlibs_f90_port -mP1OPT_check_stack -mP3OPT_emit_line_numbers -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 -mDEBUG_no_pdb=TRUE -mP3OPT_inline_alloca -mGLOB_routine_pointer_size_64 -mGLOB_split_functions=0 -mIPOPT_activate -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d92 -mCG_bnl_movbe=T -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=0 -mP2OPT_offload_unique_var_string=4332189852 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=C:\cygwin\tmp\4332slis4 -mIPOPT_mo_global_data "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe" "-debug" "-pdb:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.pdb" "-subsystem:console" "-nologo" "C:\cygwin\tmp\conftest.obj"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_4332.obj -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=C:\cygwin\tmp\4332tempfile2 -mGLOB_os_target=GLOB_OS_TARGET_WINNT -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_4332.obj -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true C:\cygwin\tmp\conftest.obj -mIPOPT_object_files=T -mIPOPT_assembly_files=C:\cygwin\tmp\4332alis3 link -out:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe -debug -pdb:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.pdb -subsystem:console -nologo C:\cygwin\tmp\conftest.obj Popping language FC compilers: Checking arg ifort: compilers: Unknown arg ifort: compilers: Checking arg command compilers: Unknown arg command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg #10006: compilers: Unknown arg #10006: compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Unknown arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Checking arg -mP1OPT_version=13.1-intel64 compilers: Unknown arg -mP1OPT_version=13.1-intel64 compilers: Checking arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Unknown arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mGLOB_microsoft_version=1600 compilers: Unknown arg -mGLOB_microsoft_version=1600 compilers: Checking arg "-mGLOB_options_string=-v compilers: Unknown arg "-mGLOB_options_string=-v compilers: Checking arg -MT compilers: Unknown arg -MT compilers: Checking arg -Z7 compilers: Unknown arg -Z7 compilers: Checking arg -fpp compilers: Unknown arg -fpp compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg -FeC:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -FeC:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Handling HPUX list of directories: \PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Checking arg -mP3OPT_defaultlibs_omit=FALSE compilers: Unknown arg -mP3OPT_defaultlibs_omit=FALSE compilers: Checking arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Unknown arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Checking arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Unknown arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Checking arg -mP3OPT_defaultlibs_f90_port compilers: Unknown arg -mP3OPT_defaultlibs_f90_port compilers: Checking arg -mP1OPT_check_stack compilers: Unknown arg -mP1OPT_check_stack compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Checking arg -mDEBUG_no_pdb=TRUE compilers: Unknown arg -mDEBUG_no_pdb=TRUE compilers: Checking arg -mP3OPT_inline_alloca compilers: Unknown arg -mP3OPT_inline_alloca compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_split_functions=0 compilers: Unknown arg -mGLOB_split_functions=0 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d92 compilers: Unknown arg -mGLOB_product_id_code=0x22006d92 compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=0 compilers: Unknown arg -mGLOB_offload_mode=0 compilers: Checking arg -mP2OPT_offload_unique_var_string=4332189852 compilers: Unknown arg -mP2OPT_offload_unique_var_string=4332189852 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Unknown arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=C:\cygwin\tmp\4332slis4 compilers: Unknown arg -mIPOPT_source_files_list=C:\cygwin\tmp\4332slis4 compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe compilers: Checking arg "-debug" compilers: Unknown arg -debug compilers: Checking arg "-pdb:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.pdb" compilers: Unknown arg -pdb:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg "-subsystem:console" compilers: Unknown arg -subsystem:console compilers: Checking arg "-nologo" compilers: Unknown arg -nologo compilers: Checking arg "C:\cygwin\tmp\conftest.obj"" compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_4332.obj compilers: Unknown arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_4332.obj compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\4332tempfile2 compilers: Unknown arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\4332tempfile2 compilers: Checking arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Unknown arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Checking arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Unknown arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Checking arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_4332.obj compilers: Unknown arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_4332.obj compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=C:\cygwin\tmp\4332alis3 compilers: Unknown arg -mIPOPT_assembly_files=C:\cygwin\tmp\4332alis3 compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg -out:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg -out:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -debug compilers: Unknown arg -debug compilers: Checking arg -pdb:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.pdb compilers: Unknown arg -pdb:C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg -subsystem:console compilers: Unknown arg -subsystem:console compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Libraries needed to link Fortran code with the C linker: ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void foo(void){D1CHK();} Popping language Cxx Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void D1CHK(void){return;} Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.o /tmp/petsc-eHpoqW/config.compilers/cxxobj.o /tmp/petsc-eHpoqW/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Cygwin detected: ignoring HAVE_F90_2PTR_ARG test ================================================================================ TEST checkFortranModuleInclude from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.compilers/conftest.exe -I/tmp/petsc-eHpoqW/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.o /tmp/petsc-eHpoqW/config.compilers/configtest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -module /tmp/petsc-eHpoqW/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Possible ERROR while running compiler: exit code 32512 Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.compilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -module:/tmp/petsc-eHpoqW/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1367) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1367) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.headers/conftest.o -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.headers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.headers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.o Executing: /tmp/petsc-eHpoqW/config.headers/conftest.exe Executing: /tmp/petsc-eHpoqW/config.headers/conftest.exe Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 5 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" ================================================================================ TEST checkSysWait from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.headers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } ================================================================================ TEST checkTime from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 73 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 73 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.headers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } ================================================================================ TEST checkMath from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 73 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\math.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MATH_H" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.headers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.headers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _USE_MATH_DEFINES 1 #include int main() { double pi = M_PI; if (pi); ; return 0; } Defined "_USE_MATH_DEFINES" to "1" Activated Windows math #defines, like M_PI ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 81 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 81 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 81 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\malloc.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 89 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 89 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\Direct.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DIRECT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #pragma once #line 25 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #pragma once #line 49 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 61 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(push) #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(disable:4001) #line 24 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma once #line 181 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 194 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 195 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 199 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 207 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 208 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 216 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 217 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 224 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 226 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 228 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 230 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 232 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 235 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 236 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 245 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 249 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 253 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 257 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 261 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 265 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 267 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(pop) #line 274 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 275 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 277 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma once #line 29 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 100 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 104 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 108 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 112 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 116 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 122 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 127 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 128 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4116) #line 135 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 136 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 137 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4514) #pragma warning(disable:4103) #line 144 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(push) #line 147 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4001) #pragma warning(disable:4201) #pragma warning(disable:4214) #line 151 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\excpt.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\dos.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DOS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #pragma once #line 17 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 35 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 36 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 37 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 88 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 103 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 145 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\setjmp.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\limits.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 117 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\fcntl.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: memory.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 125 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\memory.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MEMORY_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\io.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdint.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\float.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 141 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 141 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 141 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 141 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 141 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\search.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 145 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.headers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.c(4) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_SIZE, using default 32768 Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_LINESIZE, using default 32 Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PEDA80~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_ASSOC, using default 2 Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-eHpoqW/config.functions Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Executing: /tmp/petsc-eHpoqW/config.functions/conftest.exe Executing: /tmp/petsc-eHpoqW/config.functions/conftest.exe ================================================================================ TEST checkSysinfo from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkVPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_VPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVFPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_VFPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVSNPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE__VSNPRINTF" to "1" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.functions/conftest.cc stdout: conftest.cc c:\cygwin\tmp\petsc-ehpoqw\config.functions\conftest.cc(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; _vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx ================================================================================ TEST checkNanosleep from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union type Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union typeSource: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Compile failed inside link ================================================================================ TEST checkSignalHandlerType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.functions/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all types Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all typesSource: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-ehpoqw\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-ehpoqw\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; __va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkClassify from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [rand getdomainname _sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [rand] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_RAND" to "1" Checking for functions [getdomainname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE__SLEEP" to "1" Checking for functions [snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [realpath] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [bzero _getcwd getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [bzero] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE__GETCWD" to "1" Checking for functions [getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [uname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE__LSEEK" to "1" Checking for functions [sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [_access lseek usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE__ACCESS" to "1" Checking for functions [lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LSEEK" to "1" Checking for functions [usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [_intel_fast_memset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlclose] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [clock get_nprocs access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_CLOCK" to "1" Checking for functions [get_nprocs] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [_snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE__SNPRINTF" to "1" Checking for functions [dlerror] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externalsChecking for functions [fork getpagesize sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [fork] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getpagesize] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [memalign] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_GETCWD" to "1" Checking for functions [gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externalsChecking for functions [gethostbyname gettimeofday readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [gethostbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gettimeofday] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigaction] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [dlopen drand48 socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [dlopen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [drand48] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_MEMMOVE" to "1" Checking for functions [signal] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_SIGNAL" to "1" Checking for functions [popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [getrusage] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [times] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_TIME" to "1" Checking for functions [sysctlbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Defined "HAVE_STRICMP" to "1" ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check_siginfo_t from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-eHpoqW/config.types Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found ================================================================================ TEST check__int64 from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } Typedefed "int" to "mode_t" Checking for type: off_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } Typedefed "int" to "int32_t" ================================================================================ TEST checkPID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } Typedefed "int" to "pid_t" ================================================================================ TEST checkUID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/config.types /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 237 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.types\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.TYP\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.TYP\\conftest.c" Defined "uid_t" to "int" Defined "gid_t" to "int" ================================================================================ TEST checkSignal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include int main() { double complex x; x = I; ; return 0; } Compile failed inside link ================================================================================ TEST checkCxxComplex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:115) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:115) Check for complex numbers in namespace std Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/config.types/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.types/conftest.o Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:136) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:136) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:148) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:148) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.types/conftest.F stdout: C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.F(3): warning #7319: This argument's data type is incompatible with this intrinsic procedure; procedure assumed EXTERNAL. [DREAL] d = dreal(3.0) ----------------^ Successful compile: Source: program main double precision d d = dreal(3.0) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:156) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:156) Checks for working const, and if not found defines it to empty string Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.types\conftest.c(25) : warning C4700: uninitialized local variable 'x' used c:\cygwin\tmp\petsc-ehpoqw\config.types\conftest.c(30) : warning C4700: uninitialized local variable 't' used c:\cygwin\tmp\petsc-ehpoqw\config.types\conftest.c(46) : warning C4700: uninitialized local variable 'b' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:212) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:212) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { /* Are we little or big endian? From Harbison&Steele. */ union { long l; char c[sizeof(long)]; } u; u.l = 1; exit(u.c[sizeof(long) - 1] == 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:316) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:316) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:362) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:362) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-eHpoqW/config.libraries Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST checkMath from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:250) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:250) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:266) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:266) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: erf() not found ================================================================================ TEST checkMathTgamma from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:275) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:275) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: tgamma() not found ================================================================================ TEST checkMathFenv from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:284) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:284) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Compile failed inside link Popping language C Warning: with FE_DFL_ENV not found ================================================================================ TEST checkCompression from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:292) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:292) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lz stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Popping language C Checking for functions [compress uncompress] in library ['zlib.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o zlib.lib stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Popping language C Warning: No compression library found ================================================================================ TEST checkRealtime from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:313) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:313) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:329) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:329) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -ldl stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Popping language C Checking for header: dlfcn.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 305 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 305 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureTimers from PETSc.utilities.timer(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for functions [MPI_CRAY_barrier] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); static void _check_MPI_CRAY_barrier() { MPI_CRAY_barrier(); } int main() { _check_MPI_CRAY_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:35) Checks for limits All intermediate test results are stored in /tmp/petsc-eHpoqW/PETSc.utilities.missing Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:45) Checks if u_short is undefined Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } Defined "NEEDS_UTYPE_TYPEDEFS" to "1" ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:51) Checks for SOCKETS Checking for functions [socket] in library ['Ws2_32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_socket() { socket(0,0,0);; } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib Defined "HAVE_LIBWS2_32" to "1" Popping language C Adding ['Ws2_32.lib'] to LIBS Defined "HAVE_WINSOCK2_H" to "1" Defined "HAVE_SOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { closesocket(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o Ws2_32.lib Defined "HAVE_CLOSESOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { WSAGetLastError(); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_WSAGETLASTERROR" to "1" ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Defined "MISSING_SIGALRM" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Defined "MISSING_SIGBUS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Defined "MISSING_SIGCHLD" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Defined "MISSING_SIGCONT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Defined "MISSING_SIGHUP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Defined "MISSING_SIGKILL" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Defined "MISSING_SIGPIPE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Defined "MISSING_SIGQUIT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Defined "MISSING_SIGSTOP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Defined "MISSING_SIGSYS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Defined "MISSING_SIGTRAP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Defined "MISSING_SIGTSTP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Defined "MISSING_SIGURG" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Defined "MISSING_SIGUSR1" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } Defined "MISSING_SIGUSR2" to "1" ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:88) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:88) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.cc(14) : error C3861: 'getdomainname': identifier not found Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.cc(14) : error C3861: 'getdomainname': identifier not foundSource: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Compile failed inside link Added prototype int getdomainname(char *, int); to language extern C Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:110) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:110) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-eHpoqW/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.cc(13) : error C3861: 'drand48': identifier not found Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\PETSCU~1.MIS\conftest.cc(13) : error C3861: 'drand48': identifier not foundSource: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Compile failed inside link Added prototype double drand48(); to language extern C Added prototype void srand48(long); to language extern C Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:134) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:134) ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/scalarTypes.py:37) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol isnan referenced in function main C:\cygwin\tmp\PEDA80~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol isnan referenced in function main C:\cygwin\tmp\PEDA80~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol isinf referenced in function main C:\cygwin\tmp\PEDA80~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol isinf referenced in function main C:\cygwin\tmp\PEDA80~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib Defined "HAVE__ISNAN" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSCU~1.SCA\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE__FINITE" to "1" Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/scalarTypes.py:73) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:73) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol bgl_perfctr_void referenced in function _check_bgl_perfctr_void C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol bgl_perfctr_void referenced in function _check_bgl_perfctr_void C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol ADIOI_BGL_Open referenced in function _check_ADIOI_BGL_Open C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol ADIOI_BGL_Open referenced in function _check_ADIOI_BGL_Open C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/libraryOptions.py:92) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:92) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.types -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [GET_COMMAND_ARGUMENT] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GET_COMMAND_ARGUMENT(); static void _check_GET_COMMAND_ARGUMENT() { GET_COMMAND_ARGUMENT(); } int main() { _check_GET_COMMAND_ARGUMENT();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [GETARG] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GETARG(); static void _check_GETARG() { GETARG(); } int main() { _check_GETARG();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [ipxfargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [f90_unix_MP_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [iargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [GETARG at 16] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')'Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG at 16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) GETARG at 16_will_always_fail_with_ENOSYS(); #else GETARG at 16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.functions/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PEDA80~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST configureMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:61) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:61) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gmake...not found Checking for program /cygdrive/c/Windows/system32/gmake...not found Checking for program /cygdrive/c/Windows/gmake...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gmake...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gmake...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gmake...not found Checking for program /cygdrive/c/Program Files/MPICH2/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/MPICH2/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gmake...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gmake...not found Checking for program /cygdrive/c/MinGW/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/gmake...not found Checking for program /home/dsu/gmake...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:79) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:79) Check for GNU make Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: $xqB [^_] [^_] 3S$3C [^_] ,[^_] <-tL<@t<<+uI ,[^_] ue;} <@u. [^_] [^] r.v(1 [^_] [^_] L[^_] [^_] [^_] [^_] t+;5 [^_] [^_] <[^_] $/*B $L*B <[^_] [^_] [^_] $T+B $T+B $T+B $4+B ,[^_] [^_] ,[^_] $l,B S$;V$ [^_] $4,B $l-B $H-B [^_] <[^_] ,[^_] <[^_] $T.B $G.B $`/B $e0B $z0B $|1B $(/B @[^] $P0B $80B $`1B $<1B <[^_] 2[^_] 2^_] 2^_] 2[^_] 2^_] 2^_] ,[^_] ;] [^_] [^_] t6;} [^_] \[^_] [^_] $,7B $h6B $@6B $@6B WVSP $\7B [^_] $08B $T8B $|8B $U9B [^] $h9B [^_] [^_] <\t__B 8.t. $m`B $V`B $+5P $(`B [^_] [^_] $$aB $HaB $5^B [^_] L[^_ $2aB L[^_] $5^B WVSP [^_] [^_] [^_] BN at t [^] [^_] ;-tc $4bB $,bB $DbB S$tL @N at u [^_] [^_] $$cB $tcB [^_] $CgB $DcB $lB ,[^_] $RlB t.<$u $ZlB ,[^_] [^_] [^_] [^_] [^_] t.;5 WVS1 8.t( [^_] [^_] tj=t ,[^_] ,[^_] $(){}$`^~! cyggcc_s-1.dll __register_frame_info cyggcj-11.dll _Jv_RegisterClasses __deregister_frame_info attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES Recipe has too many lines (%ud) $(MAKE) ${MAKE} kill # recipe to execute (built-in): (from `%s', line %lu): %c%.*s .SUFFIXES SUFFIXES ARFLAGS OBJC CHECKOUT,v +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi WEAVE weave CWEAVE cweave TANGLE tangle CTANGLE ctangle rm -f LINK.o $(CC) $(LDFLAGS) $(TARGET_ARCH) COMPILE.c $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t YACC.m LEX.m COMPILE.f $(FC) $(FFLAGS) $(TARGET_ARCH) -c LINK.f $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.F $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c LINK.r $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.def $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) COMPILE.mod $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) COMPILE.p $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.p $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.s $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.s $(AS) $(ASFLAGS) $(TARGET_MACH) LINK.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F PREPROCESS.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F LINT.c $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< SCCS/s.% $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ .cpp $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.m) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ .mod $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o $(COMPILE.c) $(OUTPUT_OPTION) $< .cc.o $(COMPILE.cc) $(OUTPUT_OPTION) $< .C.o $(COMPILE.C) $(OUTPUT_OPTION) $< .cpp.o $(COMPILE.cpp) $(OUTPUT_OPTION) $< .f.o $(COMPILE.f) $(OUTPUT_OPTION) $< .m.o $(COMPILE.m) $(OUTPUT_OPTION) $< .p.o $(COMPILE.p) $(OUTPUT_OPTION) $< .F.o $(COMPILE.F) $(OUTPUT_OPTION) $< .r.o $(COMPILE.r) $(OUTPUT_OPTION) $< .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c .l.ln @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c .y.c $(YACC.y) $< mv -f y.tab.c $@ .l.c @$(RM) $@ $(LEX.l) $< > $@ .ym.m $(YACC.m) $< mv -f y.tab.c $@ .lm.m @$(RM) $@ $(LEX.m) $< > $@ .F.f $(PREPROCESS.F) $(OUTPUT_OPTION) $< .r.f $(PREPROCESS.r) $(OUTPUT_OPTION) $< .l.r $(LEX.l) $< > $@ mv -f lex.yy.r $@ .S.s $(PREPROCESS.S) $< > $@ .texinfo.info $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' name %s: Field '%s' not cached: %s hname vpath stem *name != '\0' /netrel/src/make-3.82.90-1/file.c strcache_iscached (name) Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... unlink: .SUFFIXES .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time %s: Timestamp out of range; substituting %s | %s .RECIPEPREFIX = # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. question_flag # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Files # files hash-table stats: print_file enter_file lookup_file undefined recursive simple Internal error: func_error: '%s' insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' warning: undefined variable `%.*s' default environment file environment override command line override automatic suffix basename addprefix filter %s: '%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s unterminated call to function `%s': missing `%c' abspath addsuffix notdir subst filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). *** (core dumped) (ignored) %s:%lu %s: recipe for target `%s' failed %s[%s] Error %d%s %s[%s] %s%s%s bash rksh dash ap <= end /netrel/src/make-3.82.90-1/job.c %s (line %d) Bad shell context (!unixy && !batch_mode_shell) %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) vfork cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) (remote) Putting child %p (%s) PID %s%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. %s: target `%s' does not exist %s: update target `%s' due to: %s construct_command_argv_internal break case continue eval exec exit export login logout read readonly shift switch test times trap ulimit umask unset while start_waiting_job %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to /tmp /usr/share/locale make getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine oneshell archives jobserver check-symlink .FEATURES SHELL MAKE_RESTARTS unknown debug level specification `%s' MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u BOGUS_UPDATE_STATUS /netrel/src/make-3.82.90-1/main.c unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. main always-make directory basic debug environment-overrides file help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch trace version print-directory no-print-directory what-if warn-undefined-variables eval quiet stop new-file assume-new assume-old max-load dry-run recon makefile Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. --trace Print tracing information. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. %s: %s[%u]: %s:%lu: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s %s: %s virtual memory exhausted write error: %s write error ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional warning: NUL character seen; rest of line ignored export override private define undefine prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SHELLFLAGS .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' $(HOME) HOME .INCLUDE_DIRS virtual memory exhausted empty variable name extraneous text after `define' directive missing `endef', unterminated `define' endef extraneous text after `endef' directive v != NULL /netrel/src/make-3.82.90-1/read.c invalid syntax in conditional unexport vpath include -include sinclude %s: %s recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s *p2 != '\0' v != 0 Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no `%%' .DEFAULT_GOAL missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /usr/include /usr/gnu/include /usr/local/include eval record_target_var GNUmakefile makefile Makefile stat: lstat: readlink: %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s %.2g Warning: File `%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 /netrel/src/make-3.82.90-1/remake.c Using default commands for `%s'. Nothing to be done for `%s'. `%s' is up to date. /lib /usr/lib update_file_1 _(knN r->suffixes[0] != NULL /netrel/src/make-3.82.90-1/rule.c r->suffixes[i] != NULL (%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u create_pattern_rule install_pattern_rule %s No strcache buffers total_buffers == numbuffs + 1 /netrel/src/make-3.82.90-1/strcache.c %s strcache buffers: %lu (%lu) / strings = %lu / storage = %lu B / avg = %lu B %s current buf: size = %hu B / used = %hu B / count = %hu / avg = %hu B %s other used: total = %lu B / count = %lu / avg = %lu B %s other free: total = %lu B / max = %lu B / min = %lu B / avg = %hu B %s strcache performance: lookups = %lu / hit rate = %lu%% # hash-table stats: strcache_print_stats automatic default environment makefile environment under -e command line `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) .RECIPEPREFIX .VARIABLES current_variable_set_list->next != NULL /netrel/src/make-3.82.90-1/variable.c MAKELEVEL %s%s%s MAKE_VERSION SHELL MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) %s=%u empty variable name # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # %u pattern-specific variable values # No pattern-specific variable values. pop_variable_scope 3.82.90 i686-pc-cygwin $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% BPOSIXLY_CORRECT alnum alpha blank cntrl digit graph lower print punct space upper xdigit next != NULL /netrel/src/make-3.82.90-1/glob/glob.c HOME glob GetModuleHandleA GetProcAddress __assert_func __ctype_ptr__ __errno __getreent __main _dll_crt0 at 0 _exit _fcntl64 _fdopen64 _fopen64 _fstat64 _impure_ptr _lseek64 _lstat64 _open64 _stat64 abort alarm atexit atof atoi atol calloc chdir clock_gettime close closedir ctime cygwin_detach_dll cygwin_internal dll_dllcrt0 dup2 execvp exit fclose fflush fgets fileno fork fprintf fputs fread free fwrite getcwd getenv getlogin getpid getpwnam getrlimit kill localtime malloc memcpy memmove memset mkstemp opendir pipe printf putc putenv puts qsort read readdir readlink realloc realpath remove setlocale setrlimit setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf strchr strcmp strcpy strdup strerror strlen strncmp strncpy strndup strpbrk strrchr strsignal strstr time tolower unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-8.dll Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 12 cores: using make_np = 10 Defined make macro "MAKE_NP" to "10" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:744) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:744) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in Package specific search directory MPI: [] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['fmpich2.lib', 'fmpich2g.lib', 'fmpich2s.lib', 'mpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['fmpich2.lib', 'fmpich2g.lib', 'fmpich2s.lib', 'mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o fmpich2.lib fmpich2g.lib fmpich2s.lib mpi.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['fmpich2.lib', 'fmpich2g.lib', 'mpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['fmpich2.lib', 'fmpich2g.lib', 'mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o fmpich2.lib fmpich2g.lib mpi.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['fmpich2.lib', 'mpich2.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['fmpich2.lib', 'mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o fmpich2.lib mpich2.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['libfmpich2g.a', 'libmpi.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libfmpich2g.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfmpich2g -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Popping language C Checking for library in Package specific search directory MPI: ['libfmpich.a', 'libmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libfmpich.a', 'libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfmpich -lmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfmpich -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lrt -laio -lsnl -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lssl -luuid -lpthread -lrt -ldl Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lnsl -lsocket -lrt -lnsl -lsocket Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a', 'libgm.a', 'libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a', 'libgm.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lgm -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llamf77mpi -lmpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['liblammpi++.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpio -lpmpi -llamf77mpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpio -lpmpi -llamf90mpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpio -lpmpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['liblammpi++.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['amd64/msmpifec.lib', 'amd64/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['amd64/msmpifec.lib', 'amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o amd64/msmpifec.lib amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: amd64/msmpifec.lib Warning: win32fe: File Not Found: amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'amd64/msmpifec.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: amd64/msmpifec.lib Warning: win32fe: File Not Found: amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'amd64/msmpifec.lib' Popping language C Checking for library in Package specific search directory MPI: ['i386/msmpifec.lib', 'i386/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['i386/msmpifec.lib', 'i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o i386/msmpifec.lib i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: i386/msmpifec.lib Warning: win32fe: File Not Found: i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'i386/msmpifec.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: i386/msmpifec.lib Warning: win32fe: File Not Found: i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'i386/msmpifec.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a', 'libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpi++.a', 'libmpi.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpi++.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpi++ -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpi.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['libmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['libmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['mpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o mpi.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'mpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'mpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['mpich2.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o mpich2.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'mpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'mpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['mpich.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['mpich.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o mpich.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'mpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'mpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['amd64/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'amd64/msmpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'amd64/msmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['i386/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'i386/msmpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'i386/msmpi.lib' Popping language C Checking for library in Package specific search directory MPI: [] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['lib64/fmpich2.lib', 'lib64/fmpich2g.lib', 'lib64/fmpich2s.lib', 'lib64/mpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/fmpich2.lib', 'lib64/fmpich2g.lib', 'lib64/fmpich2s.lib', 'lib64/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/fmpich2.lib lib64/fmpich2g.lib lib64/fmpich2s.lib lib64/mpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/fmpich2.lib Warning: win32fe: File Not Found: lib64/fmpich2g.lib Warning: win32fe: File Not Found: lib64/fmpich2s.lib Warning: win32fe: File Not Found: lib64/mpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/fmpich2.lib Warning: win32fe: File Not Found: lib64/fmpich2g.lib Warning: win32fe: File Not Found: lib64/fmpich2s.lib Warning: win32fe: File Not Found: lib64/mpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/fmpich2.lib', 'lib64/fmpich2g.lib', 'lib64/mpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/fmpich2.lib', 'lib64/fmpich2g.lib', 'lib64/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/fmpich2.lib lib64/fmpich2g.lib lib64/mpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/fmpich2.lib Warning: win32fe: File Not Found: lib64/fmpich2g.lib Warning: win32fe: File Not Found: lib64/mpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/fmpich2.lib Warning: win32fe: File Not Found: lib64/fmpich2g.lib Warning: win32fe: File Not Found: lib64/mpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/fmpich2.lib', 'lib64/mpich2.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/fmpich2.lib', 'lib64/mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/fmpich2.lib lib64/mpich2.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/fmpich2.lib Warning: win32fe: File Not Found: lib64/mpich2.lib LINK : fatal error LNK1104: cannot open file 'lib64/fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/fmpich2.lib Warning: win32fe: File Not Found: lib64/mpich2.lib LINK : fatal error LNK1104: cannot open file 'lib64/fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libfmpich2g.a', 'libmpi.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libfmpich2g.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfmpich2g -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfmpich -lmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lfmpich -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lrt -laio -lsnl -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lssl -luuid -lpthread -lrt -ldl Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lnsl -lsocket -lrt -lnsl -lsocket Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a', 'libgm.a', 'libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a', 'libgm.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lgm -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llamf77mpi -lmpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpio -lpmpi -llamf77mpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpio -lpmpi -llamf90mpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpio -lpmpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -llammpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpi.a', 'liblam.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/amd64/msmpifec.lib', 'lib64/amd64/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/amd64/msmpifec.lib', 'lib64/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/amd64/msmpifec.lib lib64/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/amd64/msmpifec.lib Warning: win32fe: File Not Found: lib64/amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/amd64/msmpifec.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/amd64/msmpifec.lib Warning: win32fe: File Not Found: lib64/amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/amd64/msmpifec.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/i386/msmpifec.lib', 'lib64/i386/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/i386/msmpifec.lib', 'lib64/i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/i386/msmpifec.lib lib64/i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/i386/msmpifec.lib Warning: win32fe: File Not Found: lib64/i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/i386/msmpifec.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/i386/msmpifec.lib Warning: win32fe: File Not Found: lib64/i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/i386/msmpifec.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a', 'libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpi++.a', 'libmpi.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpi++.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpi++ -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpi.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/libmpich.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/libmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/mpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/mpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/mpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/mpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/mpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/mpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/mpich2.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/mpich2.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/mpich2.lib LINK : fatal error LNK1104: cannot open file 'lib64/mpich2.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/mpich2.lib LINK : fatal error LNK1104: cannot open file 'lib64/mpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/mpich.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/mpich.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/mpich.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/mpich.lib LINK : fatal error LNK1104: cannot open file 'lib64/mpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/mpich.lib LINK : fatal error LNK1104: cannot open file 'lib64/mpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/amd64/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/amd64/msmpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/amd64/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/amd64/msmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['lib64/i386/msmpi.lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['lib64/i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o lib64/i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: lib64/i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/i386/msmpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: lib64/i386/msmpi.lib LINK : fatal error LNK1104: cannot open file 'lib64/i386/msmpi.lib' Popping language C Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/fmpich2.lib', '/opt/mpich/lib/fmpich2g.lib', '/opt/mpich/lib/fmpich2s.lib', '/opt/mpich/lib/mpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/fmpich2.lib', '/opt/mpich/lib/fmpich2g.lib', '/opt/mpich/lib/mpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/fmpich2.lib', '/opt/mpich/lib/mpich2.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/amd64/msmpifec.lib', '/opt/mpich/lib/amd64/msmpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/i386/msmpifec.lib', '/opt/mpich/lib/i386/msmpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpi.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/libmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/mpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/mpich2.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/mpich.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/amd64/msmpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib/i386/msmpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/fmpich2.lib', '/opt/mpich/lib64/fmpich2g.lib', '/opt/mpich/lib64/fmpich2s.lib', '/opt/mpich/lib64/mpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/fmpich2.lib', '/opt/mpich/lib64/fmpich2g.lib', '/opt/mpich/lib64/mpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/fmpich2.lib', '/opt/mpich/lib64/mpich2.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/amd64/msmpifec.lib', '/opt/mpich/lib64/amd64/msmpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/i386/msmpifec.lib', '/opt/mpich/lib64/i386/msmpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpi.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/libmpich.a']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/mpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/mpich2.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/mpich.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/amd64/msmpi.lib']") Directory does not exist: /opt/mpich (while checking "Package specific search directory MPI" for "['/opt/mpich/lib64/i386/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/fmpich2.lib', '/usr/lpp/ppe.poe/lib/fmpich2g.lib', '/usr/lpp/ppe.poe/lib/fmpich2s.lib', '/usr/lpp/ppe.poe/lib/mpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/fmpich2.lib', '/usr/lpp/ppe.poe/lib/fmpich2g.lib', '/usr/lpp/ppe.poe/lib/mpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/fmpich2.lib', '/usr/lpp/ppe.poe/lib/mpich2.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/amd64/msmpifec.lib', '/usr/lpp/ppe.poe/lib/amd64/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/i386/msmpifec.lib', '/usr/lpp/ppe.poe/lib/i386/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpi.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/libmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/mpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/mpich2.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/mpich.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/amd64/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib/i386/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/fmpich2.lib', '/usr/lpp/ppe.poe/lib64/fmpich2g.lib', '/usr/lpp/ppe.poe/lib64/fmpich2s.lib', '/usr/lpp/ppe.poe/lib64/mpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/fmpich2.lib', '/usr/lpp/ppe.poe/lib64/fmpich2g.lib', '/usr/lpp/ppe.poe/lib64/mpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/fmpich2.lib', '/usr/lpp/ppe.poe/lib64/mpich2.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/amd64/msmpifec.lib', '/usr/lpp/ppe.poe/lib64/amd64/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/i386/msmpifec.lib', '/usr/lpp/ppe.poe/lib64/i386/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpi.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/libmpich.a']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/mpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/mpich2.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/mpich.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/amd64/msmpi.lib']") Directory does not exist: /usr/lpp/ppe.poe (while checking "Package specific search directory MPI" for "['/usr/lpp/ppe.poe/lib64/i386/msmpi.lib']") Checking for library in Package specific search directory MPI: [] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/fmpich2.lib', '/usr/local/lib/fmpich2g.lib', '/usr/local/lib/fmpich2s.lib', '/usr/local/lib/mpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/fmpich2.lib', '/usr/local/lib/fmpich2g.lib', '/usr/local/lib/fmpich2s.lib', '/usr/local/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/fmpich2.lib /usr/local/lib/fmpich2g.lib /usr/local/lib/fmpich2s.lib /usr/local/lib/mpi.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/fmpich2.lib', '/usr/local/lib/fmpich2g.lib', '/usr/local/lib/mpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/fmpich2.lib', '/usr/local/lib/fmpich2g.lib', '/usr/local/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/fmpich2.lib /usr/local/lib/fmpich2g.lib /usr/local/lib/mpi.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/fmpich2.lib', '/usr/local/lib/mpich2.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/fmpich2.lib', '/usr/local/lib/mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/fmpich2.lib /usr/local/lib/mpich2.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\fmpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\fmpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libfmpich2g.a', 'libmpi.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libfmpich2g.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lfmpich2g -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lfmpich -lmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lfmpich -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich -lrt -laio -lsnl -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich -lssl -luuid -lpthread -lrt -ldl Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich -lnsl -lsocket -lrt -lnsl -lsocket Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a', 'libgm.a', 'libpthread.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a', 'libgm.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich -lgm -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -llamf77mpi -lmpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/liblammpi++.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -llammpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -llammpio -lpmpi -llamf77mpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -llammpio -lpmpi -llamf90mpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -llammpio -lpmpi -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/liblammpi++.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -llammpi++ -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpi -llam Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/amd64/msmpifec.lib', '/usr/local/lib/amd64/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/amd64/msmpifec.lib', '/usr/local/lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/amd64/msmpifec.lib /usr/local/lib/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib/amd64/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/amd64/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib/amd64/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/amd64/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/i386/msmpifec.lib', '/usr/local/lib/i386/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/i386/msmpifec.lib', '/usr/local/lib/i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/i386/msmpifec.lib /usr/local/lib/i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib/i386/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/i386/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib/i386/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/i386/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a', 'libpthread.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpi++.a', 'libmpi.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpi++.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpi++ -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpi.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpi Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/libmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/libmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lmpich Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/mpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/mpi.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\mpi.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\mpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/mpich2.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/mpich2.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\mpich2.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\mpich2.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/mpich.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/mpich.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/mpich.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\mpich.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'C:\cygwin\usr\local\lib\mpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/amd64/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib/i386/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib/i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib/i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: [] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/fmpich2.lib', '/usr/local/lib64/fmpich2g.lib', '/usr/local/lib64/fmpich2s.lib', '/usr/local/lib64/mpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/fmpich2.lib', '/usr/local/lib64/fmpich2g.lib', '/usr/local/lib64/fmpich2s.lib', '/usr/local/lib64/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/fmpich2.lib /usr/local/lib64/fmpich2g.lib /usr/local/lib64/fmpich2s.lib /usr/local/lib64/mpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2.lib Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2g.lib Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2s.lib Warning: win32fe: File Not Found: /usr/local/lib64/mpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2g.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2s.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2.lib Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2g.lib Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2s.lib Warning: win32fe: File Not Found: /usr/local/lib64/mpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2g.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2s.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/fmpich2.lib', '/usr/local/lib64/fmpich2g.lib', '/usr/local/lib64/mpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/fmpich2.lib', '/usr/local/lib64/fmpich2g.lib', '/usr/local/lib64/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/fmpich2.lib /usr/local/lib64/fmpich2g.lib /usr/local/lib64/mpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2.lib Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2g.lib Warning: win32fe: File Not Found: /usr/local/lib64/mpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2g.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2.lib Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2g.lib Warning: win32fe: File Not Found: /usr/local/lib64/mpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2g.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/fmpich2.lib', '/usr/local/lib64/mpich2.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/fmpich2.lib', '/usr/local/lib64/mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/fmpich2.lib /usr/local/lib64/mpich2.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2.lib Warning: win32fe: File Not Found: /usr/local/lib64/mpich2.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpich2.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/fmpich2.lib Warning: win32fe: File Not Found: /usr/local/lib64/mpich2.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/fmpich2.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpich2.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libfmpich2g.a', 'libmpi.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libfmpich2g.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lfmpich2g -lmpi Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libfmpich2g.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lfmpich -lmpich -lpmpich Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich -lpmpich Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lfmpich -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libfmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich -lpmpich -lmpich -lpmpich -lpmpich Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich -lrt -laio -lsnl -lpthread Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich -lssl -luuid -lpthread -lrt -ldl Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich -lnsl -lsocket -lrt -lnsl -lsocket Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a', 'libgm.a', 'libpthread.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a', 'libgm.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich -lgm -lpthread Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -llamf77mpi -lmpi++ -lmpi -llam Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblamf77mpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -llammpi++ -lmpi -llam Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -llammpio -lpmpi -llamf77mpi -lmpi -llam Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -llammpio -lpmpi -llamf90mpi -lmpi -llam Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -llammpio -lpmpi -lmpi -llam Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpio.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -llammpi++ -lmpi -llam Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'liblammpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpi.a', 'liblam.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpi.a', 'liblam.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpi -llam Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/amd64/msmpifec.lib', '/usr/local/lib64/amd64/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/amd64/msmpifec.lib', '/usr/local/lib64/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/amd64/msmpifec.lib /usr/local/lib64/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/amd64/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib64/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/amd64/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/amd64/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib64/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/amd64/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/i386/msmpifec.lib', '/usr/local/lib64/i386/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/i386/msmpifec.lib', '/usr/local/lib64/i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/i386/msmpifec.lib /usr/local/lib64/i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/i386/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib64/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/i386/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/i386/msmpifec.lib Warning: win32fe: File Not Found: /usr/local/lib64/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/i386/msmpifec.lib' cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a', 'libpthread.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a', 'libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich -lpthread Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpi++.a', 'libmpi.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpi++.a', 'libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpi++ -lmpi Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpi++.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpi.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpi.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpi Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpi.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/libmpich.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/libmpich.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lmpich Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libmpich.lib' Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/mpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/mpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/mpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/mpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/mpich2.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/mpich2.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/mpich2.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/mpich2.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpich2.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/mpich2.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpich2.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/mpich.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/mpich.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/mpich.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/mpich.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpich.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/mpich.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/mpich.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/amd64/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/amd64/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/amd64/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/usr/local/lib64/i386/msmpi.lib'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/usr/local/lib64/i386/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /usr/local/lib64/i386/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: /usr/local/lib64/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: /usr/local/lib64/i386/msmpi.lib cl : Command line warning D9002 : ignoring unknown option '/usr/local/lib64/i386/msmpi.lib' conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2g.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2s.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2g.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpifec.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/i386/msmpifec.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpi.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpich.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2g.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2s.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2g.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpifec.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpifec.lib', '/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpi.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpich.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2g.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2s.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2g.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/amd64/msmpifec.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/i386/msmpifec.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpi.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/mpich.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2g.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2s.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2g.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/amd64/msmpifec.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/i386/msmpifec.lib', '/c/Program Files/Microsoft Compute Cluster Pack/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpi.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpich.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files/Microsoft Compute Cluster Pack/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/fmpich2.lib', '/c/Program Files/MPICH2/lib/fmpich2g.lib', '/c/Program Files/MPICH2/lib/fmpich2s.lib', '/c/Program Files/MPICH2/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/fmpich2.lib', '/c/Program Files/MPICH2/lib/fmpich2g.lib', '/c/Program Files/MPICH2/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/fmpich2.lib', '/c/Program Files/MPICH2/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/amd64/msmpifec.lib', '/c/Program Files/MPICH2/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/i386/msmpifec.lib', '/c/Program Files/MPICH2/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpi.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/libmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/mpich.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/fmpich2.lib', '/c/Program Files/MPICH2/lib64/fmpich2g.lib', '/c/Program Files/MPICH2/lib64/fmpich2s.lib', '/c/Program Files/MPICH2/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/fmpich2.lib', '/c/Program Files/MPICH2/lib64/fmpich2g.lib', '/c/Program Files/MPICH2/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/fmpich2.lib', '/c/Program Files/MPICH2/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/amd64/msmpifec.lib', '/c/Program Files/MPICH2/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/i386/msmpifec.lib', '/c/Program Files/MPICH2/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpi.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/libmpich.a']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/mpich.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH2/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/fmpich2.lib', '/c/Program Files/MPICH/lib/fmpich2g.lib', '/c/Program Files/MPICH/lib/fmpich2s.lib', '/c/Program Files/MPICH/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/fmpich2.lib', '/c/Program Files/MPICH/lib/fmpich2g.lib', '/c/Program Files/MPICH/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/fmpich2.lib', '/c/Program Files/MPICH/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/amd64/msmpifec.lib', '/c/Program Files/MPICH/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/i386/msmpifec.lib', '/c/Program Files/MPICH/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpi.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/libmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/mpich.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/fmpich2.lib', '/c/Program Files/MPICH/lib64/fmpich2g.lib', '/c/Program Files/MPICH/lib64/fmpich2s.lib', '/c/Program Files/MPICH/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/fmpich2.lib', '/c/Program Files/MPICH/lib64/fmpich2g.lib', '/c/Program Files/MPICH/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/fmpich2.lib', '/c/Program Files/MPICH/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/amd64/msmpifec.lib', '/c/Program Files/MPICH/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/i386/msmpifec.lib', '/c/Program Files/MPICH/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpi.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/libmpich.a']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/mpich.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/fmpich2.lib', '/c/Program Files/MPICH/SDK.gcc/lib/fmpich2g.lib', '/c/Program Files/MPICH/SDK.gcc/lib/fmpich2s.lib', '/c/Program Files/MPICH/SDK.gcc/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/fmpich2.lib', '/c/Program Files/MPICH/SDK.gcc/lib/fmpich2g.lib', '/c/Program Files/MPICH/SDK.gcc/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/fmpich2.lib', '/c/Program Files/MPICH/SDK.gcc/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/amd64/msmpifec.lib', '/c/Program Files/MPICH/SDK.gcc/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/i386/msmpifec.lib', '/c/Program Files/MPICH/SDK.gcc/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/libmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/mpich.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/fmpich2.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/fmpich2g.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/fmpich2s.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/fmpich2.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/fmpich2g.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/fmpich2.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/amd64/msmpifec.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/i386/msmpifec.lib', '/c/Program Files/MPICH/SDK.gcc/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/libmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/mpich.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK.gcc/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/fmpich2.lib', '/c/Program Files/MPICH/SDK/lib/fmpich2g.lib', '/c/Program Files/MPICH/SDK/lib/fmpich2s.lib', '/c/Program Files/MPICH/SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/fmpich2.lib', '/c/Program Files/MPICH/SDK/lib/fmpich2g.lib', '/c/Program Files/MPICH/SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/fmpich2.lib', '/c/Program Files/MPICH/SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/amd64/msmpifec.lib', '/c/Program Files/MPICH/SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/i386/msmpifec.lib', '/c/Program Files/MPICH/SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/libmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/mpich.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/fmpich2.lib', '/c/Program Files/MPICH/SDK/lib64/fmpich2g.lib', '/c/Program Files/MPICH/SDK/lib64/fmpich2s.lib', '/c/Program Files/MPICH/SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/fmpich2.lib', '/c/Program Files/MPICH/SDK/lib64/fmpich2g.lib', '/c/Program Files/MPICH/SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/fmpich2.lib', '/c/Program Files/MPICH/SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/amd64/msmpifec.lib', '/c/Program Files/MPICH/SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/i386/msmpifec.lib', '/c/Program Files/MPICH/SDK/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpi.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/libmpich.a']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/mpich.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files/MPICH/SDK/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/fmpich2g.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/fmpich2s.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/fmpich2g.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpifec.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/i386/msmpifec.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/libmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/mpich.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/fmpich2g.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/fmpich2s.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/fmpich2g.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpifec.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpifec.lib', '/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/mpich.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/fmpich2g.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/fmpich2s.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/fmpich2g.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/amd64/msmpifec.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/i386/msmpifec.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/libmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/mpich.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/fmpich2g.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/fmpich2s.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/fmpich2g.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/amd64/msmpifec.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/i386/msmpifec.lib', '/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpi.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/libmpich.a']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/mpich.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/Microsoft Compute Cluster Pack/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH2/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH2/lib/fmpich2s.lib', '/c/Program Files (x86)/MPICH2/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH2/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH2/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH2/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH2/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH2/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH2/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH2/lib64/fmpich2s.lib', '/c/Program Files (x86)/MPICH2/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH2/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH2/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH2/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH2/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH2/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH2 (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH2/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH/lib/fmpich2s.lib', '/c/Program Files (x86)/MPICH/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH/lib64/fmpich2s.lib', '/c/Program Files (x86)/MPICH/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/fmpich2s.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/fmpich2s.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK.gcc/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK.gcc (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK.gcc/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK/lib/fmpich2s.lib', '/c/Program Files (x86)/MPICH/SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK/lib/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/fmpich2s.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/fmpich2g.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/fmpich2.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/amd64/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/i386/msmpifec.lib', '/c/Program Files (x86)/MPICH/SDK/lib64/i386/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpi.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/libmpich.a']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/mpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/mpich2.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/mpich.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /c/Program Files (x86)/MPICH/SDK (while checking "Package specific search directory MPI" for "['/c/Program Files (x86)/MPICH/SDK/lib64/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2s.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/i386/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/libmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/mpich.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2s.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/libmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/mpich.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 SDK/lib64/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2s.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/amd64/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/i386/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpi++.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/libmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/mpich.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "[]") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2s.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2g.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/fmpich2.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libfmpich2g.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libfmpich.a', 'libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpmpich.a', 'libmpich.a', 'libpmpich.a', 'libpmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'librt.a', 'libaio.a', 'libsnl.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libssl.a', 'libuuid.a', 'libpthread.a', 'librt.a', 'libdl.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libnsl.a', 'libsocket.a', 'librt.a', 'libnsl.a', 'libsocket.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libgm.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblamf77mpi.a', 'libmpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'liblamf77mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'liblamf90mpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpio.a', 'libpmpi.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/liblammpi++.a', 'libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpi.a', 'liblam.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/amd64/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/i386/msmpifec.lib', '/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/i386/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a', 'libpthread.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpi++.a', 'libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpi.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/libmpich.a']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpich2.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/mpich.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/amd64/msmpi.lib']") Directory does not exist: /cygdrive/c/Program Files/Microsoft Compute Cluster Pack (while checking "Package specific search directory MPI" for "['/cygdrive/c/Program Files/Microsoft Compute Cluster Pack/lib64/i386/msmpi.lib']") Checking for library in Package specific search directory MPI: [] Contents: ['bin', 'COPYRIGHT.rtf', 'examples', 'include', 'lib', 'README.winbin.rtf', 'setup.jpg'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Init referenced in function _check_MPI_Init conftest.obj : error LNK2019: unresolved external symbol MPI_Comm_create referenced in function _check_MPI_Comm_create C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for library in Package specific search directory MPI: ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2s.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] Contents: ['bin', 'COPYRIGHT.rtf', 'examples', 'include', 'lib', 'README.winbin.rtf', 'setup.jpg'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2s.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2s.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'C:\PROGRA~1\MPICH2\lib\fmpich2s.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'C:\PROGRA~1\MPICH2\lib\fmpich2s.lib' Popping language C Checking for library in Package specific search directory MPI: ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] Contents: ['bin', 'COPYRIGHT.rtf', 'examples', 'include', 'lib', 'README.winbin.rtf', 'setup.jpg'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Checking for headers Package specific search directory MPI: ['/cygdrive/c/Program Files/MPICH2/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/cygdrive/c/Program Files/MPICH2/include'] Checking include with compiler flags var CPPFLAGS ['/cygdrive/c/Program Files/MPICH2/include'] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.headers -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 457 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" #line 16 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" typedef int MPI_Datatype; typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; extern int MPICH_ATTR_FAILED_PROCESSES; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; typedef int MPI_Errhandler; typedef int MPI_Request; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18 }; typedef int MPI_Info; #line 378 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" #line 380 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" typedef __int64 MPI_Aint; typedef int MPI_Fint; #line 398 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" typedef __int64 MPI_Offset; #line 400 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" typedef struct MPI_Status { int count; int cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; #line 462 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" #line 463 "C:\\PROGRA~1\\MPICH2\\include\\mpi.h" extern __declspec(dllimport) MPI_Fint * MPI_F_STATUS_IGNORE; extern __declspec(dllimport) MPI_Fint * MPI_F_STATUSES_IGNORE; typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); Found header files ['mpi.h'] in ['/cygdrive/c/Program Files/MPICH2/include'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/petsc-eHpoqW/config.packages.MPI Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.functions -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:182) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:182) Check for functions added to the interface in MPI-2 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_FINALIZED" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST configureTypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.types/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Executing: /tmp/petsc-eHpoqW/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe Executing: /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe Executing: /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:320) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:320) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:630) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:630) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_SGI_barrier referenced in function _check_MPI_SGI_barrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_SGI_barrier referenced in function _check_MPI_SGI_barrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:640) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:640) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.libraries/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -MT -GR -EHsc -Z7 -Zm200 -TP -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.libraries/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:658) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:658) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -Z7 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for functions [] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -Z7 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language FC Checking for mpi.mod Checking for functions [] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -MT -Z7 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:683) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:683) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'buf' used c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'fh' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'buf' used c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'fh' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'info' used c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'disp' used c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'fh' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\config.packages.mpi\conftest.c(8) : warning C4700: uninitialized local variable 'info' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:720) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:720) Find MPI include paths from "mpicc -show" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -show stdout: cl : Command line warning D9002 : ignoring unknown option '-show' cl : Command line error D8003 : missing source filename Checking for functions [MPI_Alltoallw] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Checking for functions [MPI_Type_create_indexed_block] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Checking for functions [MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [MPI_Init_thread MPI_Iallreduce] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Init_thread] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } int main() { _check_MPI_Init_thread();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Checking for functions [MPI_Iallreduce] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } int main() { _check_MPI_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Ibarrier MPI_Finalized MPI_Exscan] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Ibarrier] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } int main() { _check_MPI_Ibarrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Finalized] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } int main() { _check_MPI_Finalized();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Checking for functions [MPI_Exscan] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFMPICH2" to "1" Defined "HAVE_LIBFMPICH2G" to "1" Defined "HAVE_LIBMPI" to "1" Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Checking for functions [MPIX_Iallreduce] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPIX_Iallreduce referenced in function _check_MPIX_Iallreduce C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPIX_Iallreduce referenced in function _check_MPIX_Iallreduce C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_set referenced in function _check_MPIDI_CH3I_sock_set C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_set referenced in function _check_MPIDI_CH3I_sock_set C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library ['/cygdrive/c/Program Files/MPICH2/lib/fmpich2.lib', '/cygdrive/c/Program Files/MPICH2/lib/fmpich2g.lib', '/cygdrive/c/Program Files/MPICH2/lib/mpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_fixed_nbc_progress referenced in function _check_MPIDI_CH3I_sock_fixed_nbc_progress C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_fixed_nbc_progress referenced in function _check_MPIDI_CH3I_sock_fixed_nbc_progress C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:132) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:132) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:145) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:145) Checking for mpiexec Pushing language C Popping language C Checking for program /cygdrive/c/Program Files/MPICH2/bin/mpiexec...found Defined make macro "MPIEXEC" to "/cygdrive/c/Program\ Files/MPICH2/bin/mpiexec" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-eHpoqW/config.packages.MPI/libconftest.lib /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o ; /usr/bin/true /tmp/petsc-eHpoqW/config.packages.MPI/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -I/cygdrive/c/Program\ Files/MPICH2/include /tmp/petsc-eHpoqW/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-eHpoqW/config.packages.MPI/libconftest.lib /tmp/petsc-eHpoqW/config.packages.MPI/conftest.o ; /usr/bin/true /tmp/petsc-eHpoqW/config.packages.MPI/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(19) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(19) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int' C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(33) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(33) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(19) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(19) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int' C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(33) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.c(33) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-eHpoqW/config.libraries/lib1.lib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-eHpoqW/config.libraries/lib2.lib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Compile failed inside link Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.valgrind(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:479) TESTING: configureLibrary from PETSc.packages.valgrind(config/BuildSystem/config/package.py:479) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: [] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: [] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.headers /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.headers -I/usr/local/include /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 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"c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.headers -I/usr/local/include /tmp/petsc-eHpoqW/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 541 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PEDA80~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'valgrind/valgrind.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Popping language C Directory does not exist: /opt/local (while checking "Package specific search directory VALGRIND" for "[]") Directory does not exist: /opt/local (while checking "Package specific search directory VALGRIND" for "[]") Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Popping language C Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.threadcomm(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/packages/threadcomm.py:17) TESTING: configureLibrary from PETSc.packages.threadcomm(config/PETSc/packages/threadcomm.py:17) Defined "THREADCOMM_ACTIVE" to "1" ================================================================================ TEST checkSharedLibrary from PETSc.packages.threadcomm(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:533) TESTING: checkSharedLibrary from PETSc.packages.threadcomm(config/BuildSystem/config/package.py:533) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.tetgen(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.tetgen(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Sowing ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.yaml(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.yaml(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PVODE(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.PVODE(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pcbddc(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.pcbddc(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.papi(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.papi(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pami(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.pami(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.P3Dlib(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.P3Dlib(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.pthread(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/packages/pthread.py:27) TESTING: configureLibrary from PETSc.packages.pthread(config/PETSc/packages/pthread.py:27) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Package specific search directory PTHREAD: ['libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library ['libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libpthread.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libpthread.lib' Popping language C Checking for library in Package specific search directory PTHREAD: ['lib64/libpthread.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library ['lib64/libpthread.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/config.libraries/conftest.o -lpthread Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libpthread.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libpthread.lib' Popping language C All intermediate test results are stored in /tmp/petsc-eHpoqW/PETSc.packages.pthread Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.packages.pthread/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.packages.pthread/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCP~1.PTH\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCP~1.PTH\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.packages.pthread/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -MT -wd4996 -Z7 /tmp/petsc-eHpoqW/PETSc.packages.pthread/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCP~1.PTH\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSCP~1.PTH\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.packages.pthread /tmp/petsc-eHpoqW/PETSc.packages.pthread/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\PETSCP~1.PTH\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 543 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 545 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\PETSCP~1.PTH\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\PETSCP~1.PTH\\conftest.c" C:\cygwin\tmp\PEDA80~1\PETSCP~1.PTH\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysctl.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PEDA80~1\\PETSCP~1.PTH\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 535 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 539 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 543 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 545 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PEDA80~1\\PETSCP~1.PTH\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 14 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" #line 15 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" #line 16 "c:\\cygwin\\tmp\\petsc-ehpoqw\\petsc.packages.pthread\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PEDA80~1\\PETSCP~1.PTH\\conftest.c" C:\cygwin\tmp\PEDA80~1\PETSCP~1.PTH\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysctl.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkSharedLibrary from PETSc.packages.pthread(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:533) TESTING: checkSharedLibrary from PETSc.packages.pthread(config/BuildSystem/config/package.py:533) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pthreadclasses(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.pthreadclasses(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.openmp(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/packages/openmp.py:22) TESTING: configureLibrary from PETSc.packages.openmp(config/PETSc/packages/openmp.py:22) Checks for -fopenmp compiler flag Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -fopenmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-fopenmp' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fopenmp due to cl : Command line warning D9002 : ignoring unknown option '-fopenmp' conftest.c Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -qsmp=omp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-qsmp=omp' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qsmp=omp due to cl : Command line warning D9002 : ignoring unknown option '-qsmp=omp' conftest.c Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -h omp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~2\omp Possible ERROR while running compiler: exit code 32512 stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~2\ompSource: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -h omp due to nonzero status from link Rejecting compiler flag -h omp due to Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~2\omp PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -mp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: Warning: win32fe: ignoring option: -mp conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mp due to Warning: win32fe: ignoring option: -mp conftest.c Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -Qopenmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-Qopenmp' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Qopenmp due to cl : Command line warning D9002 : ignoring unknown option '-Qopenmp' conftest.c Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -openmp Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Valid C linker flag -openmp Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Valid C linker flag -openmp Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -openmp Popping language FC Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -openmp -TP /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -openmp Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -openmp -TP /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -openmp -openmp -MT -GR -EHsc -Z7 -Zm200 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Valid Cxx linker flag -openmp Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -openmp -TP /tmp/petsc-eHpoqW/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.exe -openmp -openmp -MT -GR -EHsc -Z7 -Zm200 -openmp /tmp/petsc-eHpoqW/config.setCompilers/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Valid Cxx linker flag -openmp Popping language Cxx All intermediate test results are stored in /tmp/petsc-eHpoqW/PETSc.packages.openmp Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.packages.openmp/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.packages.openmp/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int a; #pragma omp threadprivate(a) int main() { ; return 0; } ================================================================================ TEST checkSharedLibrary from PETSc.packages.openmp(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:533) TESTING: checkSharedLibrary from PETSc.packages.openmp(config/BuildSystem/config/package.py:533) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opencl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.opencl(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.viennacl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.viennacl(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PTScotch(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.PTScotch(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Numpy(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.Numpy(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpe(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.mpe(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/packages/Matlab.py:36) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(config/PETSc/packages/Matlab.py:36) ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MatlabEngine(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.MatlabEngine(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Mathematica(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.Mathematica(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hwloc(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.hwloc(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opengl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.opengl(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.glut(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.glut(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Generator(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.Generator(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FFC(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.FFC(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.expat(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.expat(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.cuda(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.cuda(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ctetgen(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.ctetgen(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Suggar(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.Suggar(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Checking for program /usr/local/bin/cmake...not found Checking for program /usr/bin/cmake...found Defined make macro "CMAKE" to "/usr/bin/cmake" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.metis(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.metis(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.parmetis(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.parmetis(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.babel(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.java(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.java(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ams(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.ams(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.server(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.server(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.X(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:479) TESTING: configureLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:479) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Package specific search directory X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -lX11 Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libX11.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libX11.lib' Popping language C Checking for library in Package specific search directory X: ['lib64/libX11.a'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['lib64/libX11.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -lX11 Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libX11.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libX11.lib' Popping language C Directory does not exist: /opt/X11 (while checking "Package specific search directory X" for "['/opt/X11/lib/libX11.a']") Directory does not exist: /opt/X11 (while checking "Package specific search directory X" for "['/opt/X11/lib64/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.5.sdk/usr/X11 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.5.sdk/usr/X11/lib/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.5.sdk/usr/X11 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.5.sdk/usr/X11/lib64/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib64/libX11.a']") Directory does not exist: /usr/X11 (while checking "Package specific search directory X" for "['/usr/X11/lib/libX11.a']") Directory does not exist: /usr/X11 (while checking "Package specific search directory X" for "['/usr/X11/lib64/libX11.a']") Directory does not exist: /usr/X11R6 (while checking "Package specific search directory X" for "['/usr/X11R6/lib/libX11.a']") Directory does not exist: /usr/X11R6 (while checking "Package specific search directory X" for "['/usr/X11R6/lib64/libX11.a']") Directory does not exist: /usr/X11R5 (while checking "Package specific search directory X" for "['/usr/X11R5/lib/libX11.a']") Directory does not exist: /usr/X11R5 (while checking "Package specific search directory X" for "['/usr/X11R5/lib64/libX11.a']") Directory does not exist: /usr/X11R4 (while checking "Package specific search directory X" for "['/usr/X11R4/lib/libX11.a']") Directory does not exist: /usr/X11R4 (while checking "Package specific search directory X" for "['/usr/X11R4/lib64/libX11.a']") Directory does not exist: /usr/local/X11 (while checking "Package specific search directory X" for "['/usr/local/X11/lib/libX11.a']") Directory does not exist: /usr/local/X11 (while checking "Package specific search directory X" for "['/usr/local/X11/lib64/libX11.a']") Directory does not exist: /usr/local/X11R6 (while checking "Package specific search directory X" for "['/usr/local/X11R6/lib/libX11.a']") Directory does not exist: /usr/local/X11R6 (while checking "Package specific search directory X" for "['/usr/local/X11R6/lib64/libX11.a']") Directory does not exist: /usr/local/X11R5 (while checking "Package specific search directory X" for "['/usr/local/X11R5/lib/libX11.a']") Directory does not exist: /usr/local/X11R5 (while checking "Package specific search directory X" for "['/usr/local/X11R5/lib64/libX11.a']") Directory does not exist: /usr/local/X11R4 (while checking "Package specific search directory X" for "['/usr/local/X11R4/lib/libX11.a']") Directory does not exist: /usr/local/X11R4 (while checking "Package specific search directory X" for "['/usr/local/X11R4/lib64/libX11.a']") Directory does not exist: /usr/X386 (while checking "Package specific search directory X" for "['/usr/X386/lib/libX11.a']") Directory does not exist: /usr/X386 (while checking "Package specific search directory X" for "['/usr/X386/lib64/libX11.a']") Directory does not exist: /usr/x386 (while checking "Package specific search directory X" for "['/usr/x386/lib/libX11.a']") Directory does not exist: /usr/x386 (while checking "Package specific search directory X" for "['/usr/x386/lib64/libX11.a']") Directory does not exist: /usr/XFree86/X11 (while checking "Package specific search directory X" for "['/usr/XFree86/X11/lib/libX11.a']") Directory does not exist: /usr/XFree86/X11 (while checking "Package specific search directory X" for "['/usr/XFree86/X11/lib64/libX11.a']") Checking for library in Package specific search directory X: ['/usr/local/lib/libX11.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/usr/local/lib/libX11.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib -L/usr/local/lib -lX11 Ws2_32.lib stdout: LINK : fatal error LNK1104: cannot open file 'libX11.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libX11.lib' Popping language C Checking for library in Package specific search directory X: ['/usr/local/lib64/libX11.a'] Contents: ['bin', 'etc', 'include', 'lib'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/usr/local/lib64/libX11.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/usr/local/lib64 -L/usr/local/lib64 -lX11 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libX11.lib' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /usr/local/lib64 Warning: win32fe: Library Path Not Found: /usr/local/lib64 LINK : fatal error LNK1104: cannot open file 'libX11.lib' Popping language C Directory does not exist: /usr/local/x11r5 (while checking "Package specific search directory X" for "['/usr/local/x11r5/lib/libX11.a']") Directory does not exist: /usr/local/x11r5 (while checking "Package specific search directory X" for "['/usr/local/x11r5/lib64/libX11.a']") Directory does not exist: /usr/lpp/Xamples (while checking "Package specific search directory X" for "['/usr/lpp/Xamples/lib/libX11.a']") Directory does not exist: /usr/lpp/Xamples (while checking "Package specific search directory X" for "['/usr/lpp/Xamples/lib64/libX11.a']") Directory does not exist: /usr/openwin (while checking "Package specific search directory X" for "['/usr/openwin/lib/libX11.a']") Directory does not exist: /usr/openwin (while checking "Package specific search directory X" for "['/usr/openwin/lib64/libX11.a']") Directory does not exist: /usr/openwin/share (while checking "Package specific search directory X" for "['/usr/openwin/share/lib/libX11.a']") Directory does not exist: /usr/openwin/share (while checking "Package specific search directory X" for "['/usr/openwin/share/lib64/libX11.a']") ================================================================================ TEST checkSharedLibrary from PETSc.packages.X(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:533) TESTING: checkSharedLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:533) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Zoltan(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.Zoltan(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.afterimage(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.afterimage(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/Regression.py:31) TESTING: configureRegression from PETSc.utilities.Regression(config/PETSc/utilities/Regression.py:31) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C Fortran OPENMP F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex" ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/BlasLapack.py:440) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:440) Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -V stdout: ifort: command line error: no files specified; for help type "ifort /help" Popping language FC Looking for BLASLAPACK in directory starting with fblaslapack Found a copy of BLASLAPACK in fblaslapack-3.4.2 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp -openmp -O0 /tmp/petsc-eHpoqW/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/O0' Successful compile: Source: program main end Rejecting compiler flag -O0 due to ifort: command line warning #10006: ignoring unknown option '/O0' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-eHpoqW/config.setCompilers/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.setCompilers -MT -Z7 -fpp -openmp -Od /tmp/petsc-eHpoqW/config.setCompilers/conftest.F Successful compile: Source: program main end Popping language FC Pushing language FC Popping language FC Have to rebuild BlasLapack, /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2/tmpmakefile != /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/conf/BlasLapack =============================================================================== Compiling FBLASLAPACK; this may take several minutes =============================================================================== Executing: cd /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2 && make -f tmpmakefile cleanblaslapck cleanlib && make -f tmpmakefile stdout: /usr/bin/rm -f */*.o /usr/bin/rm -f ./*.a ./*.lib cd blas; make lib FC="/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" FOPTFLAGS="-MT -Z7 -fpp -openmp " FNOOPT="-Od -MT" AR="/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" AR_FLAGS="-a" RM="/usr/bin/rm -f" LIBNAME="libfblas.lib" make[1]: Entering directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2/blas' /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -MT -Z7 -fpp -openmp caxpy.f ccopy.f cdotc.f cdotu.f cgbmv.f cgemm.f cgemv.f cgerc.f cgeru.f chbmv.f chemm.f chemv.f cher2.f cher2k.f cher.f cherk.f chpmv.f chpr2.f chpr.f crotg.f cscal.f csrot.f csscal.f cswap.f csymm.f csyr2k.f csyrk.f ctbmv.f ctbsv.f ctpmv.f ctpsv.f ctrmm.f ctrmv.f ctrsm.f ctrsv.f dasum.f daxpy.f dcabs1.f dcopy.f ddot.f dgbmv.f dgemm.f dgemv.f dger.f dnrm2.f drot.f drotg.f drotm.f drotmg.f dsbmv.f dscal.f dsdot.f dspmv.f dspr2.f dspr.f dswap.f dsymm.f dsymv.f dsyr2.f dsyr2k.f dsyr.f dsyrk.f dtbmv.f dtbsv.f dtpmv.f dtpsv.f dtrmm.f dtrmv.f dtrsm.f dtrsv.f dzasum.f dznrm2.f icamax.f idamax.f isamax.f izamax.f lsame.f sasum.f saxpy.f scabs1.f scasum.f scnrm2.f scopy.f sdot.f sdsdot.f sgbmv.f sgemm.f sgemv.f sger.f snrm2.f srot.f srotg.f srotm.f srotmg.f ssbmv.f sscal.f sspmv.f sspr2.f sspr.f sswap.f ssymm.f ssymv.f ssyr2.f ssyr2k.f ssyr.f ssyrk.f stbmv.f stbsv.f stpmv.f stpsv.f strmm.f strmv.f strsm.f strsv.f xerbla_array.f xerbla.f zaxpy.f zcopy.f zdotc.f zdotu.f zdrot.f zdscal.f zgbmv.f zgemm.f zgemv.f zgerc.f zgeru.f zhbmv.f zhemm.f zhemv.f zher2.f zher2k.f zher.f zherk.f zhpmv.f zhpr2.f zhpr.f zrotg.f zscal.f zswap.f zsymm.f zsyr2k.f zsyrk.f ztbmv.f ztbsv.f ztpmv.f ztpsv.f ztrmm.f ztrmv.f ztrsm.f ztrsv.f /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a ../libfblas.lib caxpy.o ccopy.o cdotc.o cdotu.o cgbmv.o cgemm.o cgemv.o cgerc.o cgeru.o chbmv.o chemm.o chemv.o cher2.o cher2k.o cher.o cherk.o chpmv.o chpr2.o chpr.o crotg.o cscal.o csrot.o csscal.o cswap.o csymm.o csyr2k.o csyrk.o ctbmv.o ctbsv.o ctpmv.o ctpsv.o ctrmm.o ctrmv.o ctrsm.o ctrsv.o dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o drotm.o drotmg.o dsbmv.o dscal.o dsdot.o dspmv.o dspr2.o dspr.o dswap.o dsymm.o dsymv.o dsyr2.o dsyr2k.o dsyr.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dzasum.o dznrm2.o icamax.o idamax.o isamax.o izamax.o lsame.o sasum.o saxpy.o scabs1.o scasum.o scnrm2.o scopy.o sdot.o sdsdot.o sgbmv.o sgemm.o sgemv.o sger.o snrm2.o srot.o srotg.o srotm.o srotmg.o ssbmv.o sscal.o sspmv.o sspr2.o sspr.o sswap.o ssymm.o ssymv.o ssyr2.o ssyr2k.o ssyr.o ssyrk.o stbmv.o stbsv.o stpmv.o stpsv.o strmm.o strmv.o strsm.o strsv.o xerbla_array.o xerbla.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher2.o zher2k.o zher.o zherk.o zhpmv.o zhpr2.o zhpr.o zrotg.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o /usr/bin/rm -f caxpy.o ccopy.o cdotc.o cdotu.o cgbmv.o cgemm.o cgemv.o cgerc.o cgeru.o chbmv.o chemm.o chemv.o cher2.o cher2k.o cher.o cherk.o chpmv.o chpr2.o chpr.o crotg.o cscal.o csrot.o csscal.o cswap.o csymm.o csyr2k.o csyrk.o ctbmv.o ctbsv.o ctpmv.o ctpsv.o ctrmm.o ctrmv.o ctrsm.o ctrsv.o dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o drotm.o drotmg.o dsbmv.o dscal.o dsdot.o dspmv.o dspr2.o dspr.o dswap.o dsymm.o dsymv.o dsyr2.o dsyr2k.o dsyr.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dzasum.o dznrm2.o icamax.o idamax.o isamax.o izamax.o lsame.o sasum.o saxpy.o scabs1.o scasum.o scnrm2.o scopy.o sdot.o sdsdot.o sgbmv.o sgemm.o sgemv.o sger.o snrm2.o srot.o srotg.o srotm.o srotmg.o ssbmv.o sscal.o sspmv.o sspr2.o sspr.o sswap.o ssymm.o ssymv.o ssyr2.o ssyr2k.o ssyr.o ssyrk.o stbmv.o stbsv.o stpmv.o stpsv.o strmm.o strmv.o strsm.o strsv.o xerbla_array.o xerbla.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher2.o zher2k.o zher.o zherk.o zhpmv.o zhpr2.o zhpr.o zrotg.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o make[1]: Leaving directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2/blas' /usr/bin/true libfblas.lib cd lapack; make lib FC="/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" FOPTFLAGS="-MT -Z7 -fpp -openmp " FNOOPT="-Od -MT" AR="/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" AR_FLAGS="-a" RM="/usr/bin/rm -f" LIBNAME="libflapack.lib" make[1]: Entering directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2/lapack' /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -Od -MT slaruv.f dlaruv.f /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -MT -Z7 -fpp -openmp cbbcsd.f cbdsqr.f cgbbrd.f cgbcon.f cgbequb.f cgbequ.f cgbrfs.f cgbrfsx.f cgbsv.f cgbsvx.f cgbsvxx.f cgbtf2.f cgbtrf.f cgbtrs.f cgebak.f cgebal.f cgebd2.f cgebrd.f cgecon.f cgeequb.f cgeequ.f cgees.f cgeesx.f cgeev.f cgeevx.f cgegs.f cgegv.f cgehd2.f cgehrd.f cgelq2.f cgelqf.f cgelsd.f cgels.f cgelss.f cgelsx.f cgelsy.f cgemqrt.f cgeql2.f cgeqlf.f cgeqp3.f cgeqpf.f cgeqr2.f cgeqr2p.f cgeqrf.f cgeqrfp.f cgeqrt2.f cgeqrt3.f cgeqrt.f cgerfs.f cgerfsx.f cgerq2.f cgerqf.f cgesc2.f cgesdd.f cgesvd.f cgesv.f cgesvx.f cgesvxx.f cgetc2.f cgetf2.f cgetrf.f cgetri.f cgetrs.f cggbak.f cggbal.f cgges.f cggesx.f cggev.f cggevx.f cggglm.f cgghrd.f cgglse.f cggqrf.f cggrqf.f cggsvd.f cggsvp.f cgtcon.f cgtrfs.f cgtsv.f cgtsvx.f cgttrf.f cgttrs.f cgtts2.f chbevd.f chbev.f chbevx.f chbgst.f chbgvd.f chbgv.f chbgvx.f chbtrd.f checon.f checon_rook.f cheequb.f cheevd.f cheev.f cheevr.f cheevx.f chegs2.f chegst.f chegvd.f chegv.f chegvx.f cherfs.f cherfsx.f chesv.f chesv_rook.f chesvx.f chesvxx.f cheswapr.f chetd2.f chetf2.f chetf2_rook.f chetrd.f chetrf.f chetrf_rook.f chetri2.f chetri2x.f chetri.f chetri_rook.f chetrs2.f chetrs.f chetrs_rook.f chfrk.f chgeqz.f chla_transtype.f chpcon.f chpevd.f chpev.f chpevx.f chpgst.f chpgvd.f chpgv.f chpgvx.f chprfs.f chpsv.f chpsvx.f chptrd.f chptrf.f chptri.f chptrs.f chsein.f chseqr.f clabrd.f clacgv.f clacn2.f clacon.f clacp2.f clacpy.f clacrm.f clacrt.f cladiv.f claed0.f claed7.f claed8.f claein.f claesy.f claev2.f clag2z.f cla_gbamv.f cla_gbrcond_c.f cla_gbrcond_x.f cla_gbrfsx_extended.f cla_gbrpvgrw.f cla_geamv.f cla_gercond_c.f cla_gercond_x.f cla_gerfsx_extended.f cla_gerpvgrw.f clags2.f clagtm.f cla_heamv.f clahef.f clahef_rook.f cla_hercond_c.f cla_hercond_x.f cla_herfsx_extended.f cla_herpvgrw.f clahqr.f clahr2.f clahrd.f claic1.f cla_lin_berr.f clals0.f clalsa.f clalsd.f clangb.f clange.f clangt.f clanhb.f clanhe.f clanhf.f clanhp.f clanhs.f clanht.f clansb.f clansp.f clansy.f clantb.f clantp.f clantr.f clapll.f clapmr.f clapmt.f cla_porcond_c.f cla_porcond_x.f cla_porfsx_extended.f cla_porpvgrw.f claqgb.f claqge.f claqhb.f claqhe.f claqhp.f claqp2.f claqps.f claqr0.f claqr1.f claqr2.f claqr3.f claqr4.f claqr5.f claqsb.f claqsp.f claqsy.f clar1v.f clar2v.f clarcm.f clarfb.f clarf.f clarfg.f clarfgp.f clarft.f clarfx.f clargv.f clarnv.f clarrv.f clarscl2.f clartg.f clartv.f clarzb.f clarz.f clarzt.f clascl2.f clascl.f claset.f clasr.f classq.f claswp.f cla_syamv.f clasyf.f clasyf_rook.f cla_syrcond_c.f cla_syrcond_x.f cla_syrfsx_extended.f cla_syrpvgrw.f clatbs.f clatdf.f clatps.f clatrd.f clatrs.f clatrz.f clatzm.f clauu2.f clauum.f cla_wwaddw.f cpbcon.f cpbequ.f cpbrfs.f cpbstf.f cpbsv.f cpbsvx.f cpbtf2.f cpbtrf.f cpbtrs.f cpftrf.f cpftri.f cpftrs.f cpocon.f cpoequb.f cpoequ.f cporfs.f cporfsx.f cposv.f cposvx.f cposvxx.f cpotf2.f cpotrf.f cpotri.f cpotrs.f cppcon.f cppequ.f cpprfs.f cppsv.f cppsvx.f cpptrf.f cpptri.f cpptrs.f cpstf2.f cpstrf.f cptcon.f cpteqr.f cptrfs.f cptsv.f cptsvx.f cpttrf.f cpttrs.f cptts2.f crot.f cspcon.f cspmv.f cspr.f csprfs.f cspsv.f cspsvx.f csptrf.f csptri.f csptrs.f csrscl.f cstedc.f cstegr.f cstein.f cstemr.f csteqr.f csycon.f csycon_rook.f csyconv.f csyequb.f csymv.f csyr.f csyrfs.f csyrfsx.f csysv.f csysv_rook.f csysvx.f csysvxx.f csyswapr.f csytf2.f csytf2_rook.f csytrf.f csytrf_rook.f csytri2.f csytri2x.f csytri.f csytri_rook.f csytrs2.f csytrs.f csytrs_rook.f ctbcon.f ctbrfs.f ctbtrs.f ctfsm.f ctftri.f ctfttp.f ctfttr.f ctgevc.f ctgex2.f ctgexc.f ctgsen.f ctgsja.f ctgsna.f ctgsy2.f ctgsyl.f ctpcon.f ctpmqrt.f ctpqrt2.f ctpqrt.f ctprfb.f ctprfs.f ctptri.f ctptrs.f ctpttf.f ctpttr.f ctrcon.f ctrevc.f ctrexc.f ctrrfs.f ctrsen.f ctrsna.f ctrsyl.f ctrti2.f ctrtri.f ctrtrs.f ctrttf.f ctrttp.f ctzrqf.f ctzrzf.f cunbdb1.f cunbdb2.f cunbdb3.f cunbdb4.f cunbdb5.f cunbdb6.f cunbdb.f cuncsd2by1.f cuncsd.f cung2l.f cung2r.f cungbr.f cunghr.f cungl2.f cunglq.f cungql.f cungqr.f cungr2.f cungrq.f cungtr.f cunm2l.f cunm2r.f cunmbr.f cunmhr.f cunml2.f cunmlq.f cunmql.f cunmqr.f cunmr2.f cunmr3.f cunmrq.f cunmrz.f cunmtr.f cupgtr.f cupmtr.f dbbcsd.f dbdsdc.f dbdsqr.f ddisna.f dgbbrd.f dgbcon.f dgbequb.f dgbequ.f dgbrfs.f dgbrfsx.f dgbsv.f dgbsvx.f dgbsvxx.f dgbtf2.f dgbtrf.f dgbtrs.f dgebak.f dgebal.f dgebd2.f dgebrd.f dgecon.f dgeequb.f dgeequ.f dgees.f dgeesx.f dgeev.f dgeevx.f dgegs.f dgegv.f dgehd2.f dgehrd.f dgejsv.f dgelq2.f dgelqf.f dgelsd.f dgels.f dgelss.f dgelsx.f dgelsy.f dgemqrt.f dgeql2.f dgeqlf.f dgeqp3.f dgeqpf.f dgeqr2.f dgeqr2p.f dgeqrf.f dgeqrfp.f dgeqrt2.f dgeqrt3.f dgeqrt.f dgerfs.f dgerfsx.f dgerq2.f dgerqf.f dgesc2.f dgesdd.f dgesvd.f dgesv.f dgesvj.f dgesvx.f dgesvxx.f dgetc2.f dgetf2.f dgetrf.f dgetri.f dgetrs.f dggbak.f dggbal.f dgges.f dggesx.f dggev.f dggevx.f dggglm.f dgghrd.f dgglse.f dggqrf.f dggrqf.f dggsvd.f dggsvp.f dgsvj0.f dgsvj1.f dgtcon.f dgtrfs.f dgtsv.f dgtsvx.f dgttrf.f dgttrs.f dgtts2.f dhgeqz.f dhsein.f dhseqr.f disnan.f dlabad.f dlabrd.f dlacn2.f dlacon.f dlacpy.f dladiv.f dlae2.f dlaebz.f dlaed0.f dlaed1.f dlaed2.f dlaed3.f dlaed4.f dlaed5.f dlaed6.f dlaed7.f dlaed8.f dlaed9.f dlaeda.f dlaein.f dlaev2.f dlaexc.f dlag2.f dlag2s.f dla_gbamv.f dla_gbrcond.f dla_gbrfsx_extended.f dla_gbrpvgrw.f dla_geamv.f dla_gercond.f dla_gerfsx_extended.f dla_gerpvgrw.f dlags2.f dlagtf.f dlagtm.f dlagts.f dlagv2.f dlahqr.f dlahr2.f dlahrd.f dlaic1.f dlaisnan.f dla_lin_berr.f dlaln2.f dlals0.f dlalsa.f dlalsd.f dlamrg.f dlaneg.f dlangb.f dlange.f dlangt.f dlanhs.f dlansb.f dlansf.f dlansp.f dlanst.f dlansy.f dlantb.f dlantp.f dlantr.f dlanv2.f dlapll.f dlapmr.f dlapmt.f dla_porcond.f dla_porfsx_extended.f dla_porpvgrw.f dlapy2.f dlapy3.f dlaqgb.f dlaqge.f dlaqp2.f dlaqps.f dlaqr0.f dlaqr1.f dlaqr2.f dlaqr3.f dlaqr4.f dlaqr5.f dlaqsb.f dlaqsp.f dlaqsy.f dlaqtr.f dlar1v.f dlar2v.f dlarfb.f dlarf.f dlarfg.f dlarfgp.f dlarft.f dlarfx.f dlargv.f dlarnv.f dlarra.f dlarrb.f dlarrc.f dlarrd.f dlarre.f dlarrf.f dlarrj.f dlarrk.f dlarrr.f dlarrv.f dlarscl2.f dlartg.f dlartgp.f dlartgs.f dlartv.f dlaruv.f dlarzb.f dlarz.f dlarzt.f dlas2.f dlascl2.f dlascl.f dlasd0.f dlasd1.f dlasd2.f dlasd3.f dlasd4.f dlasd5.f dlasd6.f dlasd7.f dlasd8.f dlasda.f dlasdq.f dlasdt.f dlaset.f dlasq1.f dlasq2.f dlasq3.f dlasq4.f dlasq5.f dlasq6.f dlasr.f dlasrt.f dlassq.f dlasv2.f dlaswp.f dlasy2.f dla_syamv.f dlasyf.f dlasyf_rook.f dla_syrcond.f dla_syrfsx_extended.f dla_syrpvgrw.f dlat2s.f dlatbs.f dlatdf.f dlatps.f dlatrd.f dlatrs.f dlatrz.f dlatzm.f dlauu2.f dlauum.f dla_wwaddw.f dlazq3.f dlazq4.f dopgtr.f dopmtr.f dorbdb1.f dorbdb2.f dorbdb3.f dorbdb4.f dorbdb5.f dorbdb6.f dorbdb.f dorcsd2by1.f dorcsd.f dorg2l.f dorg2r.f dorgbr.f dorghr.f dorgl2.f dorglq.f dorgql.f dorgqr.f dorgr2.f dorgrq.f dorgtr.f dorm2l.f dorm2r.f dormbr.f dormhr.f dorml2.f dormlq.f dormql.f dormqr.f dormr2.f dormr3.f dormrq.f dormrz.f dormtr.f dpbcon.f dpbequ.f dpbrfs.f dpbstf.f dpbsv.f dpbsvx.f dpbtf2.f dpbtrf.f dpbtrs.f dpftrf.f dpftri.f dpftrs.f dpocon.f dpoequb.f dpoequ.f dporfs.f dporfsx.f dposv.f dposvx.f dposvxx.f dpotf2.f dpotrf.f dpotri.f dpotrs.f dppcon.f dppequ.f dpprfs.f dppsv.f dppsvx.f dpptrf.f dpptri.f dpptrs.f dpstf2.f dpstrf.f dptcon.f dpteqr.f dptrfs.f dptsv.f dptsvx.f dpttrf.f dpttrs.f dptts2.f drscl.f dsbevd.f dsbev.f dsbevx.f dsbgst.f dsbgvd.f dsbgv.f dsbgvx.f dsbtrd.f dsfrk.f dsgesv.f dspcon.f dspevd.f dspev.f dspevx.f dspgst.f dspgvd.f dspgv.f dspgvx.f dsposv.f dsprfs.f dspsv.f dspsvx.f dsptrd.f dsptrf.f dsptri.f dsptrs.f dstebz.f dstedc.f dstegr.f dstein.f dstemr.f dsteqr.f dsterf.f dstevd.f dstev.f dstevr.f dstevx.f dsycon.f dsycon_rook.f dsyconv.f dsyequb.f dsyevd.f dsyev.f dsyevr.f dsyevx.f dsygs2.f dsygst.f dsygvd.f dsygv.f dsygvx.f dsyrfs.f dsyrfsx.f dsysv.f dsysv_rook.f dsysvx.f dsysvxx.f dsyswapr.f dsytd2.f dsytf2.f dsytf2_rook.f dsytrd.f dsytrf.f dsytrf_rook.f dsytri2.f dsytri2x.f dsytri.f dsytri_rook.f dsytrs2.f dsytrs.f dsytrs_rook.f dtbcon.f dtbrfs.f dtbtrs.f dtfsm.f dtftri.f dtfttp.f dtfttr.f dtgevc.f dtgex2.f dtgexc.f dtgsen.f dtgsja.f dtgsna.f dtgsy2.f dtgsyl.f dtpcon.f dtpmqrt.f dtpqrt2.f dtpqrt.f dtprfb.f dtprfs.f dtptri.f dtptrs.f dtpttf.f dtpttr.f dtrcon.f dtrevc.f dtrexc.f dtrrfs.f dtrsen.f dtrsna.f dtrsyl.f dtrti2.f dtrtri.f dtrtrs.f dtrttf.f dtrttp.f dtzrqf.f dtzrzf.f dzsum1.f icmax1.f ieeeck.f ilaclc.f ilaclr.f iladiag.f iladlc.f iladlr.f ilaenv.f ilaprec.f ilaslc.f ilaslr.f ilatrans.f ilauplo.f ilaver.f ilazlc.f ilazlr.f iparmq.f izmax1.f lsamen.f sbbcsd.f sbdsdc.f sbdsqr.f scsum1.f sdisna.f sgbbrd.f sgbcon.f sgbequb.f sgbequ.f sgbrfs.f sgbrfsx.f sgbsv.f sgbsvx.f sgbsvxx.f sgbtf2.f sgbtrf.f sgbtrs.f sgebak.f sgebal.f sgebd2.f sgebrd.f sgecon.f sgeequb.f sgeequ.f sgees.f sgeesx.f sgeev.f sgeevx.f sgegs.f sgegv.f sgehd2.f sgehrd.f sgejsv.f sgelq2.f sgelqf.f sgelsd.f sgels.f sgelss.f sgelsx.f sgelsy.f sgemqrt.f sgeql2.f sgeqlf.f sgeqp3.f sgeqpf.f sgeqr2.f sgeqr2p.f sgeqrf.f sgeqrfp.f sgeqrt2.f sgeqrt3.f sgeqrt.f sgerfs.f sgerfsx.f sgerq2.f sgerqf.f sgesc2.f sgesdd.f sgesvd.f sgesv.f sgesvj.f sgesvx.f sgesvxx.f sgetc2.f sgetf2.f sgetrf.f sgetri.f sgetrs.f sggbak.f sggbal.f sgges.f sggesx.f sggev.f sggevx.f sggglm.f sgghrd.f sgglse.f sggqrf.f sggrqf.f sggsvd.f sggsvp.f sgsvj0.f sgsvj1.f sgtcon.f sgtrfs.f sgtsv.f sgtsvx.f sgttrf.f sgttrs.f sgtts2.f shgeqz.f shsein.f shseqr.f sisnan.f slabad.f slabrd.f slacn2.f slacon.f slacpy.f sladiv.f slae2.f slaebz.f slaed0.f slaed1.f slaed2.f slaed3.f slaed4.f slaed5.f slaed6.f slaed7.f slaed8.f slaed9.f slaeda.f slaein.f slaev2.f slaexc.f slag2d.f slag2.f sla_gbamv.f sla_gbrcond.f sla_gbrfsx_extended.f sla_gbrpvgrw.f sla_geamv.f sla_gercond.f sla_gerfsx_extended.f sla_gerpvgrw.f slags2.f slagtf.f slagtm.f slagts.f slagv2.f slahqr.f slahr2.f slahrd.f slaic1.f slaisnan.f sla_lin_berr.f slaln2.f slals0.f slalsa.f slalsd.f slamrg.f slaneg.f slangb.f slange.f slangt.f slanhs.f slansb.f slansf.f slansp.f slanst.f slansy.f slantb.f slantp.f slantr.f slanv2.f slapll.f slapmr.f slapmt.f sla_porcond.f sla_porfsx_extended.f sla_porpvgrw.f slapy2.f slapy3.f slaqgb.f slaqge.f slaqp2.f slaqps.f slaqr0.f slaqr1.f slaqr2.f slaqr3.f slaqr4.f slaqr5.f slaqsb.f slaqsp.f slaqsy.f slaqtr.f slar1v.f slar2v.f slarfb.f slarf.f slarfg.f slarfgp.f slarft.f slarfx.f slargv.f slarnv.f slarra.f slarrb.f slarrc.f slarrd.f slarre.f slarrf.f slarrj.f slarrk.f slarrr.f slarrv.f slarscl2.f slartg.f slartgp.f slartgs.f slartv.f slaruv.f slarzb.f slarz.f slarzt.f slas2.f slascl2.f slascl.f slasd0.f slasd1.f slasd2.f slasd3.f slasd4.f slasd5.f slasd6.f slasd7.f slasd8.f slasda.f slasdq.f slasdt.f slaset.f slasq1.f slasq2.f slasq3.f slasq4.f slasq5.f slasq6.f slasr.f slasrt.f slassq.f slasv2.f slaswp.f slasy2.f sla_syamv.f slasyf.f slasyf_rook.f sla_syrcond.f sla_syrfsx_extended.f sla_syrpvgrw.f slatbs.f slatdf.f slatps.f slatrd.f slatrs.f slatrz.f slatzm.f slauu2.f slauum.f sla_wwaddw.f slazq3.f slazq4.f sopgtr.f sopmtr.f sorbdb1.f sorbdb2.f sorbdb3.f sorbdb4.f sorbdb5.f sorbdb6.f sorbdb.f sorcsd2by1.f sorcsd.f sorg2l.f sorg2r.f sorgbr.f sorghr.f sorgl2.f sorglq.f sorgql.f sorgqr.f sorgr2.f sorgrq.f sorgtr.f sorm2l.f sorm2r.f sormbr.f sormhr.f sorml2.f sormlq.f sormql.f sormqr.f sormr2.f sormr3.f sormrq.f sormrz.f sormtr.f spbcon.f spbequ.f spbrfs.f spbstf.f spbsv.f spbsvx.f spbtf2.f spbtrf.f spbtrs.f spftrf.f spftri.f spftrs.f spocon.f spoequb.f spoequ.f sporfs.f sporfsx.f sposv.f sposvx.f sposvxx.f spotf2.f spotrf.f spotri.f spotrs.f sppcon.f sppequ.f spprfs.f sppsv.f sppsvx.f spptrf.f spptri.f spptrs.f spstf2.f spstrf.f sptcon.f spteqr.f sptrfs.f sptsv.f sptsvx.f spttrf.f spttrs.f sptts2.f srscl.f ssbevd.f ssbev.f ssbevx.f ssbgst.f ssbgvd.f ssbgv.f ssbgvx.f ssbtrd.f ssfrk.f sspcon.f sspevd.f sspev.f sspevx.f sspgst.f sspgvd.f sspgv.f sspgvx.f ssprfs.f sspsv.f sspsvx.f ssptrd.f ssptrf.f ssptri.f ssptrs.f sstebz.f sstedc.f sstegr.f sstein.f sstemr.f ssteqr.f ssterf.f sstevd.f sstev.f sstevr.f sstevx.f ssycon.f ssycon_rook.f ssyconv.f ssyequb.f ssyevd.f ssyev.f ssyevr.f ssyevx.f ssygs2.f ssygst.f ssygvd.f ssygv.f ssygvx.f ssyrfs.f ssyrfsx.f ssysv.f ssysv_rook.f ssysvx.f ssysvxx.f ssyswapr.f ssytd2.f ssytf2.f ssytf2_rook.f ssytrd.f ssytrf.f ssytrf_rook.f ssytri2.f ssytri2x.f ssytri.f ssytri_rook.f ssytrs2.f ssytrs.f ssytrs_rook.f stbcon.f stbrfs.f stbtrs.f stfsm.f stftri.f stfttp.f stfttr.f stgevc.f stgex2.f stgexc.f stgsen.f stgsja.f stgsna.f stgsy2.f stgsyl.f stpcon.f stpmqrt.f stpqrt2.f stpqrt.f stprfb.f stprfs.f stptri.f stptrs.f stpttf.f stpttr.f strcon.f strevc.f strexc.f strrfs.f strsen.f strsna.f strsyl.f strti2.f strtri.f strtrs.f strttf.f strttp.f stzrqf.f stzrzf.f zbbcsd.f zbdsqr.f zcgesv.f zcposv.f zdrscl.f zgbbrd.f zgbcon.f zgbequb.f zgbequ.f zgbrfs.f zgbrfsx.f zgbsv.f zgbsvx.f zgbsvxx.f zgbtf2.f zgbtrf.f zgbtrs.f zgebak.f zgebal.f zgebd2.f zgebrd.f zgecon.f zgeequb.f zgeequ.f zgees.f zgeesx.f zgeev.f zgeevx.f zgegs.f zgegv.f zgehd2.f zgehrd.f zgelq2.f zgelqf.f zgelsd.f zgels.f zgelss.f zgelsx.f zgelsy.f zgemqrt.f zgeql2.f zgeqlf.f zgeqp3.f zgeqpf.f zgeqr2.f zgeqr2p.f zgeqrf.f zgeqrfp.f zgeqrt2.f zgeqrt3.f zgeqrt.f zgerfs.f zgerfsx.f zgerq2.f zgerqf.f zgesc2.f zgesdd.f zgesvd.f zgesv.f zgesvx.f zgesvxx.f zgetc2.f zgetf2.f zgetrf.f zgetri.f zgetrs.f zggbak.f zggbal.f zgges.f zggesx.f zggev.f zggevx.f zggglm.f zgghrd.f zgglse.f zggqrf.f zggrqf.f zggsvd.f zggsvp.f zgtcon.f zgtrfs.f zgtsv.f zgtsvx.f zgttrf.f zgttrs.f zgtts2.f zhbevd.f zhbev.f zhbevx.f zhbgst.f zhbgvd.f zhbgv.f zhbgvx.f zhbtrd.f zhecon.f zhecon_rook.f zheequb.f zheevd.f zheev.f zheevr.f zheevx.f zhegs2.f zhegst.f zhegvd.f zhegv.f zhegvx.f zherfs.f zherfsx.f zhesv.f zhesv_rook.f zhesvx.f zhesvxx.f zheswapr.f zhetd2.f zhetf2.f zhetf2_rook.f zhetrd.f zhetrf.f zhetrf_rook.f zhetri2.f zhetri2x.f zhetri.f zhetri_rook.f zhetrs2.f zhetrs.f zhetrs_rook.f zhfrk.f zhgeqz.f zhpcon.f zhpevd.f zhpev.f zhpevx.f zhpgst.f zhpgvd.f zhpgv.f zhpgvx.f zhprfs.f zhpsv.f zhpsvx.f zhptrd.f zhptrf.f zhptri.f zhptrs.f zhsein.f zhseqr.f zlabrd.f zlacgv.f zlacn2.f zlacon.f zlacp2.f zlacpy.f zlacrm.f zlacrt.f zladiv.f zlaed0.f zlaed7.f zlaed8.f zlaein.f zlaesy.f zlaev2.f zlag2c.f zla_gbamv.f zla_gbrcond_c.f zla_gbrcond_x.f zla_gbrfsx_extended.f zla_gbrpvgrw.f zla_geamv.f zla_gercond_c.f zla_gercond_x.f zla_gerfsx_extended.f zla_gerpvgrw.f zlags2.f zlagtm.f zla_heamv.f zlahef.f zlahef_rook.f zla_hercond_c.f zla_hercond_x.f zla_herfsx_extended.f zla_herpvgrw.f zlahqr.f zlahr2.f zlahrd.f zlaic1.f zla_lin_berr.f zlals0.f zlalsa.f zlalsd.f zlangb.f zlange.f zlangt.f zlanhb.f zlanhe.f zlanhf.f zlanhp.f zlanhs.f zlanht.f zlansb.f zlansp.f zlansy.f zlantb.f zlantp.f zlantr.f zlapll.f zlapmr.f zlapmt.f zla_porcond_c.f zla_porcond_x.f zla_porfsx_extended.f zla_porpvgrw.f zlaqgb.f zlaqge.f zlaqhb.f zlaqhe.f zlaqhp.f zlaqp2.f zlaqps.f zlaqr0.f zlaqr1.f zlaqr2.f zlaqr3.f zlaqr4.f zlaqr5.f zlaqsb.f zlaqsp.f zlaqsy.f zlar1v.f zlar2v.f zlarcm.f zlarfb.f zlarf.f zlarfg.f zlarfgp.f zlarft.f zlarfx.f zlargv.f zlarnv.f zlarrv.f zlarscl2.f zlartg.f zlartv.f zlarzb.f zlarz.f zlarzt.f zlascl2.f zlascl.f zlaset.f zlasr.f zlassq.f zlaswp.f zla_syamv.f zlasyf.f zlasyf_rook.f zla_syrcond_c.f zla_syrcond_x.f zla_syrfsx_extended.f zla_syrpvgrw.f zlat2c.f zlatbs.f zlatdf.f zlatps.f zlatrd.f zlatrs.f zlatrz.f zlatzm.f zlauu2.f zlauum.f zla_wwaddw.f zpbcon.f zpbequ.f zpbrfs.f zpbstf.f zpbsv.f zpbsvx.f zpbtf2.f zpbtrf.f zpbtrs.f zpftrf.f zpftri.f zpftrs.f zpocon.f zpoequb.f zpoequ.f zporfs.f zporfsx.f zposv.f zposvx.f zposvxx.f zpotf2.f zpotrf.f zpotri.f zpotrs.f zppcon.f zppequ.f zpprfs.f zppsv.f zppsvx.f zpptrf.f zpptri.f zpptrs.f zpstf2.f zpstrf.f zptcon.f zpteqr.f zptrfs.f zptsv.f zptsvx.f zpttrf.f zpttrs.f zptts2.f zrot.f zspcon.f zspmv.f zspr.f zsprfs.f zspsv.f zspsvx.f zsptrf.f zsptri.f zsptrs.f zstedc.f zstegr.f zstein.f zstemr.f zsteqr.f zsycon.f zsycon_rook.f zsyconv.f zsyequb.f zsymv.f zsyr.f zsyrfs.f zsyrfsx.f zsysv.f zsysv_rook.f zsysvx.f zsysvxx.f zsyswapr.f zsytf2.f zsytf2_rook.f zsytrf.f zsytrf_rook.f zsytri2.f zsytri2x.f zsytri.f zsytri_rook.f zsytrs2.f zsytrs.f zsytrs_rook.f ztbcon.f ztbrfs.f ztbtrs.f ztfsm.f ztftri.f ztfttp.f ztfttr.f ztgevc.f ztgex2.f ztgexc.f ztgsen.f ztgsja.f ztgsna.f ztgsy2.f ztgsyl.f ztpcon.f ztpmqrt.f ztpqrt2.f ztpqrt.f ztprfb.f ztprfs.f ztptri.f ztptrs.f ztpttf.f ztpttr.f ztrcon.f ztrevc.f ztrexc.f ztrrfs.f ztrsen.f ztrsna.f ztrsyl.f ztrti2.f ztrtri.f ztrtrs.f ztrttf.f ztrttp.f ztzrqf.f ztzrzf.f zunbdb1.f zunbdb2.f zunbdb3.f zunbdb4.f zunbdb5.f zunbdb6.f zunbdb.f zuncsd2by1.f zuncsd.f zung2l.f zung2r.f zungbr.f zunghr.f zungl2.f zunglq.f zungql.f zungqr.f zungr2.f zungrq.f zungtr.f zunm2l.f zunm2r.f zunmbr.f zunmhr.f zunml2.f zunmlq.f zunmql.f zunmqr.f zunmr2.f zunmr3.f zunmrq.f zunmrz.f zunmtr.f zupgtr.f zupmtr.f C:\cygwin\packages\PETSC-~2\ARCH-M~2\EXTERN~1\FBLASL~1.2\lapack\cgebal.f(208): remark #7713: This statement function has not been used. [CABS1] REAL CABS1 -------------------------^ C:\cygwin\packages\PETSC-~2\ARCH-M~2\EXTERN~1\FBLASL~1.2\lapack\zgebal.f(207): remark #7713: This statement function has not been used. [CABS1] DOUBLE PRECISION CABS1 -------------------------^ /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a ../libflapack.lib slaruv.o dlaruv.o cbbcsd.o cbdsqr.o cgbbrd.o cgbcon.o cgbequb.o cgbequ.o cgbrfs.o cgbrfsx.o cgbsv.o cgbsvx.o cgbsvxx.o cgbtf2.o cgbtrf.o cgbtrs.o cgebak.o cgebal.o cgebd2.o cgebrd.o cgecon.o cgeequb.o cgeequ.o cgees.o cgeesx.o cgeev.o cgeevx.o cgegs.o cgegv.o cgehd2.o cgehrd.o cgelq2.o cgelqf.o cgelsd.o cgels.o cgelss.o cgelsx.o cgelsy.o cgemqrt.o cgeql2.o cgeqlf.o cgeqp3.o cgeqpf.o cgeqr2.o cgeqr2p.o cgeqrf.o cgeqrfp.o cgeqrt2.o cgeqrt3.o cgeqrt.o cgerfs.o cgerfsx.o cgerq2.o cgerqf.o cgesc2.o cgesdd.o cgesvd.o cgesv.o cgesvx.o cgesvxx.o cgetc2.o cgetf2.o cgetrf.o cgetri.o cgetrs.o cggbak.o cggbal.o cgges.o cggesx.o cggev.o cggevx.o cggglm.o cgghrd.o cgglse.o cggqrf.o cggrqf.o cggsvd.o cggsvp.o cgtcon.o cgtrfs.o cgtsv.o cgtsvx.o cgttrf.o cgttrs.o cgtts2.o chbevd.o chbev.o chbevx.o chbgst.o chbgvd.o chbgv.o chbgvx.o chbtrd.o checon.o checon_rook.o cheequb.o cheevd.o cheev.o cheevr.o cheevx.o chegs2.o chegst.o chegvd.o chegv.o chegvx.o cherfs.o cherfsx.o chesv.o chesv_rook.o chesvx.o chesvxx.o cheswapr.o chetd2.o chetf2.o chetf2_rook.o chetrd.o chetrf.o chetrf_rook.o chetri2.o chetri2x.o chetri.o chetri_rook.o chetrs2.o chetrs.o chetrs_rook.o chfrk.o chgeqz.o chla_transtype.o chpcon.o chpevd.o chpev.o chpevx.o chpgst.o chpgvd.o chpgv.o chpgvx.o chprfs.o chpsv.o chpsvx.o chptrd.o chptrf.o chptri.o chptrs.o chsein.o chseqr.o clabrd.o clacgv.o clacn2.o clacon.o clacp2.o clacpy.o clacrm.o clacrt.o cladiv.o claed0.o claed7.o claed8.o claein.o claesy.o claev2.o clag2z.o cla_gbamv.o cla_gbrcond_c.o cla_gbrcond_x.o cla_gbrfsx_extended.o cla_gbrpvgrw.o cla_geamv.o cla_gercond_c.o cla_gercond_x.o cla_gerfsx_extended.o cla_gerpvgrw.o clags2.o clagtm.o cla_heamv.o clahef.o clahef_rook.o cla_hercond_c.o cla_hercond_x.o cla_herfsx_extended.o cla_herpvgrw.o clahqr.o clahr2.o clahrd.o claic1.o cla_lin_berr.o clals0.o clalsa.o clalsd.o clangb.o clange.o clangt.o clanhb.o clanhe.o clanhf.o clanhp.o clanhs.o clanht.o clansb.o clansp.o clansy.o clantb.o clantp.o clantr.o clapll.o clapmr.o clapmt.o cla_porcond_c.o cla_porcond_x.o cla_porfsx_extended.o cla_porpvgrw.o claqgb.o claqge.o claqhb.o claqhe.o claqhp.o claqp2.o claqps.o claqr0.o claqr1.o claqr2.o claqr3.o claqr4.o claqr5.o claqsb.o claqsp.o claqsy.o clar1v.o clar2v.o clarcm.o clarfb.o clarf.o clarfg.o clarfgp.o clarft.o clarfx.o clargv.o clarnv.o clarrv.o clarscl2.o clartg.o clartv.o clarzb.o clarz.o clarzt.o clascl2.o clascl.o claset.o clasr.o classq.o claswp.o cla_syamv.o clasyf.o clasyf_rook.o cla_syrcond_c.o cla_syrcond_x.o cla_syrfsx_extended.o cla_syrpvgrw.o clatbs.o clatdf.o clatps.o clatrd.o clatrs.o clatrz.o clatzm.o clauu2.o clauum.o cla_wwaddw.o cpbcon.o cpbequ.o cpbrfs.o cpbstf.o cpbsv.o cpbsvx.o cpbtf2.o cpbtrf.o cpbtrs.o cpftrf.o cpftri.o cpftrs.o cpocon.o cpoequb.o cpoequ.o cporfs.o cporfsx.o cposv.o cposvx.o cposvxx.o cpotf2.o cpotrf.o cpotri.o cpotrs.o cppcon.o cppequ.o cpprfs.o cppsv.o cppsvx.o cpptrf.o cpptri.o cpptrs.o cpstf2.o cpstrf.o cptcon.o cpteqr.o cptrfs.o cptsv.o cptsvx.o cpttrf.o cpttrs.o cptts2.o crot.o cspcon.o cspmv.o cspr.o csprfs.o cspsv.o cspsvx.o csptrf.o csptri.o csptrs.o csrscl.o cstedc.o cstegr.o cstein.o cstemr.o csteqr.o csycon.o csycon_rook.o csyconv.o csyequb.o csymv.o csyr.o csyrfs.o csyrfsx.o csysv.o csysv_rook.o csysvx.o csysvxx.o csyswapr.o csytf2.o csytf2_rook.o csytrf.o csytrf_rook.o csytri2.o csytri2x.o csytri.o csytri_rook.o csytrs2.o csytrs.o csytrs_rook.o ctbcon.o ctbrfs.o ctbtrs.o ctfsm.o ctftri.o ctfttp.o ctfttr.o ctgevc.o ctgex2.o ctgexc.o ctgsen.o ctgsja.o ctgsna.o ctgsy2.o ctgsyl.o ctpcon.o ctpmqrt.o ctpqrt2.o ctpqrt.o ctprfb.o ctprfs.o ctptri.o ctptrs.o ctpttf.o ctpttr.o ctrcon.o ctrevc.o ctrexc.o ctrrfs.o ctrsen.o ctrsna.o ctrsyl.o ctrti2.o ctrtri.o ctrtrs.o ctrttf.o ctrttp.o ctzrqf.o ctzrzf.o cunbdb1.o cunbdb2.o cunbdb3.o cunbdb4.o cunbdb5.o cunbdb6.o cunbdb.o cuncsd2by1.o cuncsd.o cung2l.o cung2r.o cungbr.o cunghr.o cungl2.o cunglq.o cungql.o cungqr.o cungr2.o cungrq.o cungtr.o cunm2l.o cunm2r.o cunmbr.o cunmhr.o cunml2.o cunmlq.o cunmql.o cunmqr.o cunmr2.o cunmr3.o cunmrq.o cunmrz.o cunmtr.o cupgtr.o cupmtr.o dbbcsd.o dbdsdc.o dbdsqr.o ddisna.o dgbbrd.o dgbcon.o dgbequb.o dgbequ.o dgbrfs.o dgbrfsx.o dgbsv.o dgbsvx.o dgbsvxx.o dgbtf2.o dgbtrf.o dgbtrs.o dgebak.o dgebal.o dgebd2.o dgebrd.o dgecon.o dgeequb.o dgeequ.o dgees.o dgeesx.o dgeev.o dgeevx.o dgegs.o dgegv.o dgehd2.o dgehrd.o dgejsv.o dgelq2.o dgelqf.o dgelsd.o dgels.o dgelss.o dgelsx.o dgelsy.o dgemqrt.o dgeql2.o dgeqlf.o dgeqp3.o dgeqpf.o dgeqr2.o dgeqr2p.o dgeqrf.o dgeqrfp.o dgeqrt2.o dgeqrt3.o dgeqrt.o dgerfs.o dgerfsx.o dgerq2.o dgerqf.o dgesc2.o dgesdd.o dgesvd.o dgesv.o dgesvj.o dgesvx.o dgesvxx.o dgetc2.o dgetf2.o dgetrf.o dgetri.o dgetrs.o dggbak.o dggbal.o dgges.o dggesx.o dggev.o dggevx.o dggglm.o dgghrd.o dgglse.o dggqrf.o dggrqf.o dggsvd.o dggsvp.o dgsvj0.o dgsvj1.o dgtcon.o dgtrfs.o dgtsv.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o dhgeqz.o dhsein.o dhseqr.o disnan.o dlabad.o dlabrd.o dlacn2.o dlacon.o dlacpy.o dladiv.o dlae2.o dlaebz.o dlaed0.o dlaed1.o dlaed2.o dlaed3.o dlaed4.o dlaed5.o dlaed6.o dlaed7.o dlaed8.o dlaed9.o dlaeda.o dlaein.o dlaev2.o dlaexc.o dlag2.o dlag2s.o dla_gbamv.o dla_gbrcond.o dla_gbrfsx_extended.o dla_gbrpvgrw.o dla_geamv.o dla_gercond.o dla_gerfsx_extended.o dla_gerpvgrw.o dlags2.o dlagtf.o dlagtm.o dlagts.o dlagv2.o dlahqr.o dlahr2.o dlahrd.o dlaic1.o dlaisnan.o dla_lin_berr.o dlaln2.o dlals0.o dlalsa.o dlalsd.o dlamrg.o dlaneg.o dlangb.o dlange.o dlangt.o dlanhs.o dlansb.o dlansf.o dlansp.o dlanst.o dlansy.o dlantb.o dlantp.o dlantr.o dlanv2.o dlapll.o dlapmr.o dlapmt.o dla_porcond.o dla_porfsx_extended.o dla_porpvgrw.o dlapy2.o dlapy3.o dlaqgb.o dlaqge.o dlaqp2.o dlaqps.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlaqsb.o dlaqsp.o dlaqsy.o dlaqtr.o dlar1v.o dlar2v.o dlarfb.o dlarf.o dlarfg.o dlarfgp.o dlarft.o dlarfx.o dlargv.o dlarnv.o dlarra.o dlarrb.o dlarrc.o dlarrd.o dlarre.o dlarrf.o dlarrj.o dlarrk.o dlarrr.o dlarrv.o dlarscl2.o dlartg.o dlartgp.o dlartgs.o dlartv.o dlaruv.o dlarzb.o dlarz.o dlarzt.o dlas2.o dlascl2.o dlascl.o dlasd0.o dlasd1.o dlasd2.o dlasd3.o dlasd4.o dlasd5.o dlasd6.o dlasd7.o dlasd8.o dlasda.o dlasdq.o dlasdt.o dlaset.o dlasq1.o dlasq2.o dlasq3.o dlasq4.o dlasq5.o dlasq6.o dlasr.o dlasrt.o dlassq.o dlasv2.o dlaswp.o dlasy2.o dla_syamv.o dlasyf.o dlasyf_rook.o dla_syrcond.o dla_syrfsx_extended.o dla_syrpvgrw.o dlat2s.o dlatbs.o dlatdf.o dlatps.o dlatrd.o dlatrs.o dlatrz.o dlatzm.o dlauu2.o dlauum.o dla_wwaddw.o dlazq3.o dlazq4.o dopgtr.o dopmtr.o dorbdb1.o dorbdb2.o dorbdb3.o dorbdb4.o dorbdb5.o dorbdb6.o dorbdb.o dorcsd2by1.o dorcsd.o dorg2l.o dorg2r.o dorgbr.o dorghr.o dorgl2.o dorglq.o dorgql.o dorgqr.o dorgr2.o dorgrq.o dorgtr.o dorm2l.o dorm2r.o dormbr.o dormhr.o dorml2.o dormlq.o dormql.o dormqr.o dormr2.o dormr3.o dormrq.o dormrz.o dormtr.o dpbcon.o dpbequ.o dpbrfs.o dpbstf.o dpbsv.o dpbsvx.o dpbtf2.o dpbtrf.o dpbtrs.o dpftrf.o dpftri.o dpftrs.o dpocon.o dpoequb.o dpoequ.o dporfs.o dporfsx.o dposv.o dposvx.o dposvxx.o dpotf2.o dpotrf.o dpotri.o dpotrs.o dppcon.o dppequ.o dpprfs.o dppsv.o dppsvx.o dpptrf.o dpptri.o dpptrs.o dpstf2.o dpstrf.o dptcon.o dpteqr.o dptrfs.o dptsv.o dptsvx.o dpttrf.o dpttrs.o dptts2.o drscl.o dsbevd.o dsbev.o dsbevx.o dsbgst.o dsbgvd.o dsbgv.o dsbgvx.o dsbtrd.o dsfrk.o dsgesv.o dspcon.o dspevd.o dspev.o dspevx.o dspgst.o dspgvd.o dspgv.o dspgvx.o dsposv.o dsprfs.o dspsv.o dspsvx.o dsptrd.o dsptrf.o dsptri.o dsptrs.o dstebz.o dstedc.o dstegr.o dstein.o dstemr.o dsteqr.o dsterf.o dstevd.o dstev.o dstevr.o dstevx.o dsycon.o dsycon_rook.o dsyconv.o dsyequb.o dsyevd.o dsyev.o dsyevr.o dsyevx.o dsygs2.o dsygst.o dsygvd.o dsygv.o dsygvx.o dsyrfs.o dsyrfsx.o dsysv.o dsysv_rook.o dsysvx.o dsysvxx.o dsyswapr.o dsytd2.o dsytf2.o dsytf2_rook.o dsytrd.o dsytrf.o dsytrf_rook.o dsytri2.o dsytri2x.o dsytri.o dsytri_rook.o dsytrs2.o dsytrs.o dsytrs_rook.o dtbcon.o dtbrfs.o dtbtrs.o dtfsm.o dtftri.o dtfttp.o dtfttr.o dtgevc.o dtgex2.o dtgexc.o dtgsen.o dtgsja.o dtgsna.o dtgsy2.o dtgsyl.o dtpcon.o dtpmqrt.o dtpqrt2.o dtpqrt.o dtprfb.o dtprfs.o dtptri.o dtptrs.o dtpttf.o dtpttr.o dtrcon.o dtrevc.o dtrexc.o dtrrfs.o dtrsen.o dtrsna.o dtrsyl.o dtrti2.o dtrtri.o dtrtrs.o dtrttf.o dtrttp.o dtzrqf.o dtzrzf.o dzsum1.o icmax1.o ieeeck.o ilaclc.o ilaclr.o iladiag.o iladlc.o iladlr.o ilaenv.o ilaprec.o ilaslc.o ilaslr.o ilatrans.o ilauplo.o ilaver.o ilazlc.o ilazlr.o iparmq.o izmax1.o lsamen.o sbbcsd.o sbdsdc.o sbdsqr.o scsum1.o sdisna.o sgbbrd.o sgbcon.o sgbequb.o sgbequ.o sgbrfs.o sgbrfsx.o sgbsv.o sgbsvx.o sgbsvxx.o sgbtf2.o sgbtrf.o sgbtrs.o sgebak.o sgebal.o sgebd2.o sgebrd.o sgecon.o sgeequb.o sgeequ.o sgees.o sgeesx.o sgeev.o sgeevx.o sgegs.o sgegv.o sgehd2.o sgehrd.o sgejsv.o sgelq2.o sgelqf.o sgelsd.o sgels.o sgelss.o sgelsx.o sgelsy.o sgemqrt.o sgeql2.o sgeqlf.o sgeqp3.o sgeqpf.o sgeqr2.o sgeqr2p.o sgeqrf.o sgeqrfp.o sgeqrt2.o sgeqrt3.o sgeqrt.o sgerfs.o sgerfsx.o sgerq2.o sgerqf.o sgesc2.o sgesdd.o sgesvd.o sgesv.o sgesvj.o sgesvx.o sgesvxx.o sgetc2.o sgetf2.o sgetrf.o sgetri.o sgetrs.o sggbak.o sggbal.o sgges.o sggesx.o sggev.o sggevx.o sggglm.o sgghrd.o sgglse.o sggqrf.o sggrqf.o sggsvd.o sggsvp.o sgsvj0.o sgsvj1.o sgtcon.o sgtrfs.o sgtsv.o sgtsvx.o sgttrf.o sgttrs.o sgtts2.o shgeqz.o shsein.o shseqr.o sisnan.o slabad.o slabrd.o slacn2.o slacon.o slacpy.o sladiv.o slae2.o slaebz.o slaed0.o slaed1.o slaed2.o slaed3.o slaed4.o slaed5.o slaed6.o slaed7.o slaed8.o slaed9.o slaeda.o slaein.o slaev2.o slaexc.o slag2d.o slag2.o sla_gbamv.o sla_gbrcond.o sla_gbrfsx_extended.o sla_gbrpvgrw.o sla_geamv.o sla_gercond.o sla_gerfsx_extended.o sla_gerpvgrw.o slags2.o slagtf.o slagtm.o slagts.o slagv2.o slahqr.o slahr2.o slahrd.o slaic1.o slaisnan.o sla_lin_berr.o slaln2.o slals0.o slalsa.o slalsd.o slamrg.o slaneg.o slangb.o slange.o slangt.o slanhs.o slansb.o slansf.o slansp.o slanst.o slansy.o slantb.o slantp.o slantr.o slanv2.o slapll.o slapmr.o slapmt.o sla_porcond.o sla_porfsx_extended.o sla_porpvgrw.o slapy2.o slapy3.o slaqgb.o slaqge.o slaqp2.o slaqps.o slaqr0.o slaqr1.o slaqr2.o slaqr3.o slaqr4.o slaqr5.o slaqsb.o slaqsp.o slaqsy.o slaqtr.o slar1v.o slar2v.o slarfb.o slarf.o slarfg.o slarfgp.o slarft.o slarfx.o slargv.o slarnv.o slarra.o slarrb.o slarrc.o slarrd.o slarre.o slarrf.o slarrj.o slarrk.o slarrr.o slarrv.o slarscl2.o slartg.o slartgp.o slartgs.o slartv.o slaruv.o slarzb.o slarz.o slarzt.o slas2.o slascl2.o slascl.o slasd0.o slasd1.o slasd2.o slasd3.o slasd4.o slasd5.o slasd6.o slasd7.o slasd8.o slasda.o slasdq.o slasdt.o slaset.o slasq1.o slasq2.o slasq3.o slasq4.o slasq5.o slasq6.o slasr.o slasrt.o slassq.o slasv2.o slaswp.o slasy2.o sla_syamv.o slasyf.o slasyf_rook.o sla_syrcond.o sla_syrfsx_extended.o sla_syrpvgrw.o slatbs.o slatdf.o slatps.o slatrd.o slatrs.o slatrz.o slatzm.o slauu2.o slauum.o sla_wwaddw.o slazq3.o slazq4.o sopgtr.o sopmtr.o sorbdb1.o sorbdb2.o sorbdb3.o sorbdb4.o sorbdb5.o sorbdb6.o sorbdb.o sorcsd2by1.o sorcsd.o sorg2l.o sorg2r.o sorgbr.o sorghr.o sorgl2.o sorglq.o sorgql.o sorgqr.o sorgr2.o sorgrq.o sorgtr.o sorm2l.o sorm2r.o sormbr.o sormhr.o sorml2.o sormlq.o sormql.o sormqr.o sormr2.o sormr3.o sormrq.o sormrz.o sormtr.o spbcon.o spbequ.o spbrfs.o spbstf.o spbsv.o spbsvx.o spbtf2.o spbtrf.o spbtrs.o spftrf.o spftri.o spftrs.o spocon.o spoequb.o spoequ.o sporfs.o sporfsx.o sposv.o sposvx.o sposvxx.o spotf2.o spotrf.o spotri.o spotrs.o sppcon.o sppequ.o spprfs.o sppsv.o sppsvx.o spptrf.o spptri.o spptrs.o spstf2.o spstrf.o sptcon.o spteqr.o sptrfs.o sptsv.o sptsvx.o spttrf.o spttrs.o sptts2.o srscl.o ssbevd.o ssbev.o ssbevx.o ssbgst.o ssbgvd.o ssbgv.o ssbgvx.o ssbtrd.o ssfrk.o sspcon.o sspevd.o sspev.o sspevx.o sspgst.o sspgvd.o sspgv.o sspgvx.o ssprfs.o sspsv.o sspsvx.o ssptrd.o ssptrf.o ssptri.o ssptrs.o sstebz.o sstedc.o sstegr.o sstein.o sstemr.o ssteqr.o ssterf.o sstevd.o sstev.o sstevr.o sstevx.o ssycon.o ssycon_rook.o ssyconv.o ssyequb.o ssyevd.o ssyev.o ssyevr.o ssyevx.o ssygs2.o ssygst.o ssygvd.o ssygv.o ssygvx.o ssyrfs.o ssyrfsx.o ssysv.o ssysv_rook.o ssysvx.o ssysvxx.o ssyswapr.o ssytd2.o ssytf2.o ssytf2_rook.o ssytrd.o ssytrf.o ssytrf_rook.o ssytri2.o ssytri2x.o ssytri.o ssytri_rook.o ssytrs2.o ssytrs.o ssytrs_rook.o stbcon.o stbrfs.o stbtrs.o stfsm.o stftri.o stfttp.o stfttr.o stgevc.o stgex2.o stgexc.o stgsen.o stgsja.o stgsna.o stgsy2.o stgsyl.o stpcon.o stpmqrt.o stpqrt2.o stpqrt.o stprfb.o stprfs.o stptri.o stptrs.o stpttf.o stpttr.o strcon.o strevc.o strexc.o strrfs.o strsen.o strsna.o strsyl.o strti2.o strtri.o strtrs.o strttf.o strttp.o stzrqf.o stzrzf.o zbbcsd.o zbdsqr.o zcgesv.o zcposv.o zdrscl.o zgbbrd.o zgbcon.o zgbequb.o zgbequ.o zgbrfs.o zgbrfsx.o zgbsv.o zgbsvx.o zgbsvxx.o zgbtf2.o zgbtrf.o zgbtrs.o zgebak.o zgebal.o zgebd2.o zgebrd.o zgecon.o zgeequb.o zgeequ.o zgees.o zgeesx.o zgeev.o zgeevx.o zgegs.o zgegv.o zgehd2.o zgehrd.o zgelq2.o zgelqf.o zgelsd.o zgels.o zgelss.o zgelsx.o zgelsy.o zgemqrt.o zgeql2.o zgeqlf.o zgeqp3.o zgeqpf.o zgeqr2.o zgeqr2p.o zgeqrf.o zgeqrfp.o zgeqrt2.o zgeqrt3.o zgeqrt.o zgerfs.o zgerfsx.o zgerq2.o zgerqf.o zgesc2.o zgesdd.o zgesvd.o zgesv.o zgesvx.o zgesvxx.o zgetc2.o zgetf2.o zgetrf.o zgetri.o zgetrs.o zggbak.o zggbal.o zgges.o zggesx.o zggev.o zggevx.o zggglm.o zgghrd.o zgglse.o zggqrf.o zggrqf.o zggsvd.o zggsvp.o zgtcon.o zgtrfs.o zgtsv.o zgtsvx.o zgttrf.o zgttrs.o zgtts2.o zhbevd.o zhbev.o zhbevx.o zhbgst.o zhbgvd.o zhbgv.o zhbgvx.o zhbtrd.o zhecon.o zhecon_rook.o zheequb.o zheevd.o zheev.o zheevr.o zheevx.o zhegs2.o zhegst.o zhegvd.o zhegv.o zhegvx.o zherfs.o zherfsx.o zhesv.o zhesv_rook.o zhesvx.o zhesvxx.o zheswapr.o zhetd2.o zhetf2.o zhetf2_rook.o zhetrd.o zhetrf.o zhetrf_rook.o zhetri2.o zhetri2x.o zhetri.o zhetri_rook.o zhetrs2.o zhetrs.o zhetrs_rook.o zhfrk.o zhgeqz.o zhpcon.o zhpevd.o zhpev.o zhpevx.o zhpgst.o zhpgvd.o zhpgv.o zhpgvx.o zhprfs.o zhpsv.o zhpsvx.o zhptrd.o zhptrf.o zhptri.o zhptrs.o zhsein.o zhseqr.o zlabrd.o zlacgv.o zlacn2.o zlacon.o zlacp2.o zlacpy.o zlacrm.o zlacrt.o zladiv.o zlaed0.o zlaed7.o zlaed8.o zlaein.o zlaesy.o zlaev2.o zlag2c.o zla_gbamv.o zla_gbrcond_c.o zla_gbrcond_x.o zla_gbrfsx_extended.o zla_gbrpvgrw.o zla_geamv.o zla_gercond_c.o zla_gercond_x.o zla_gerfsx_extended.o zla_gerpvgrw.o zlags2.o zlagtm.o zla_heamv.o zlahef.o zlahef_rook.o zla_hercond_c.o zla_hercond_x.o zla_herfsx_extended.o zla_herpvgrw.o zlahqr.o zlahr2.o zlahrd.o zlaic1.o zla_lin_berr.o zlals0.o zlalsa.o zlalsd.o zlangb.o zlange.o zlangt.o zlanhb.o zlanhe.o zlanhf.o zlanhp.o zlanhs.o zlanht.o zlansb.o zlansp.o zlansy.o zlantb.o zlantp.o zlantr.o zlapll.o zlapmr.o zlapmt.o zla_porcond_c.o zla_porcond_x.o zla_porfsx_extended.o zla_porpvgrw.o zlaqgb.o zlaqge.o zlaqhb.o zlaqhe.o zlaqhp.o zlaqp2.o zlaqps.o zlaqr0.o zlaqr1.o zlaqr2.o zlaqr3.o zlaqr4.o zlaqr5.o zlaqsb.o zlaqsp.o zlaqsy.o zlar1v.o zlar2v.o zlarcm.o zlarfb.o zlarf.o zlarfg.o zlarfgp.o zlarft.o zlarfx.o zlargv.o zlarnv.o zlarrv.o zlarscl2.o zlartg.o zlartv.o zlarzb.o zlarz.o zlarzt.o zlascl2.o zlascl.o zlaset.o zlasr.o zlassq.o zlaswp.o zla_syamv.o zlasyf.o zlasyf_rook.o zla_syrcond_c.o zla_syrcond_x.o zla_syrfsx_extended.o zla_syrpvgrw.o zlat2c.o zlatbs.o zlatdf.o zlatps.o zlatrd.o zlatrs.o zlatrz.o zlatzm.o zlauu2.o zlauum.o zla_wwaddw.o zpbcon.o zpbequ.o zpbrfs.o zpbstf.o zpbsv.o zpbsvx.o zpbtf2.o zpbtrf.o zpbtrs.o zpftrf.o zpftri.o zpftrs.o zpocon.o zpoequb.o zpoequ.o zporfs.o zporfsx.o zposv.o zposvx.o zposvxx.o zpotf2.o zpotrf.o zpotri.o zpotrs.o zppcon.o zppequ.o zpprfs.o zppsv.o zppsvx.o zpptrf.o zpptri.o zpptrs.o zpstf2.o zpstrf.o zptcon.o zpteqr.o zptrfs.o zptsv.o zptsvx.o zpttrf.o zpttrs.o zptts2.o zrot.o zspcon.o zspmv.o zspr.o zsprfs.o zspsv.o zspsvx.o zsptrf.o zsptri.o zsptrs.o zstedc.o zstegr.o zstein.o zstemr.o zsteqr.o zsycon.o zsycon_rook.o zsyconv.o zsyequb.o zsymv.o zsyr.o zsyrfs.o zsyrfsx.o zsysv.o zsysv_rook.o zsysvx.o zsysvxx.o zsyswapr.o zsytf2.o zsytf2_rook.o zsytrf.o zsytrf_rook.o zsytri2.o zsytri2x.o zsytri.o zsytri_rook.o zsytrs2.o zsytrs.o zsytrs_rook.o ztbcon.o ztbrfs.o ztbtrs.o ztfsm.o ztftri.o ztfttp.o ztfttr.o ztgevc.o ztgex2.o ztgexc.o ztgsen.o ztgsja.o ztgsna.o ztgsy2.o ztgsyl.o ztpcon.o ztpmqrt.o ztpqrt2.o ztpqrt.o ztprfb.o ztprfs.o ztptri.o ztptrs.o ztpttf.o ztpttr.o ztrcon.o ztrevc.o ztrexc.o ztrrfs.o ztrsen.o ztrsna.o ztrsyl.o ztrti2.o ztrtri.o ztrtrs.o ztrttf.o ztrttp.o ztzrqf.o ztzrzf.o zunbdb1.o zunbdb2.o zunbdb3.o zunbdb4.o zunbdb5.o zunbdb6.o zunbdb.o zuncsd2by1.o zuncsd.o zung2l.o zung2r.o zungbr.o zunghr.o zungl2.o zunglq.o zungql.o zungqr.o zungr2.o zungrq.o zungtr.o zunm2l.o zunm2r.o zunmbr.o zunmhr.o zunml2.o zunmlq.o zunmql.o zunmqr.o zunmr2.o zunmr3.o zunmrq.o zunmrz.o zunmtr.o zupgtr.o zupmtr.o Replacing dlaruv.o Replacing slaruv.o /usr/bin/rm -f slaruv.o dlaruv.o cbbcsd.o cbdsqr.o cgbbrd.o cgbcon.o cgbequb.o cgbequ.o cgbrfs.o cgbrfsx.o cgbsv.o cgbsvx.o cgbsvxx.o cgbtf2.o cgbtrf.o cgbtrs.o cgebak.o cgebal.o cgebd2.o cgebrd.o cgecon.o cgeequb.o cgeequ.o cgees.o cgeesx.o cgeev.o cgeevx.o cgegs.o cgegv.o cgehd2.o cgehrd.o cgelq2.o cgelqf.o cgelsd.o cgels.o cgelss.o cgelsx.o cgelsy.o cgemqrt.o cgeql2.o cgeqlf.o cgeqp3.o cgeqpf.o cgeqr2.o cgeqr2p.o cgeqrf.o cgeqrfp.o cgeqrt2.o cgeqrt3.o cgeqrt.o cgerfs.o cgerfsx.o cgerq2.o cgerqf.o cgesc2.o cgesdd.o cgesvd.o cgesv.o cgesvx.o cgesvxx.o cgetc2.o cgetf2.o cgetrf.o cgetri.o cgetrs.o cggbak.o cggbal.o cgges.o cggesx.o cggev.o cggevx.o cggglm.o cgghrd.o cgglse.o cggqrf.o cggrqf.o cggsvd.o cggsvp.o cgtcon.o cgtrfs.o cgtsv.o cgtsvx.o cgttrf.o cgttrs.o cgtts2.o chbevd.o chbev.o chbevx.o chbgst.o chbgvd.o chbgv.o chbgvx.o chbtrd.o checon.o checon_rook.o cheequb.o cheevd.o cheev.o cheevr.o cheevx.o chegs2.o chegst.o chegvd.o chegv.o chegvx.o cherfs.o cherfsx.o chesv.o chesv_rook.o chesvx.o chesvxx.o cheswapr.o chetd2.o chetf2.o chetf2_rook.o chetrd.o chetrf.o chetrf_rook.o chetri2.o chetri2x.o chetri.o chetri_rook.o chetrs2.o chetrs.o chetrs_rook.o chfrk.o chgeqz.o chla_transtype.o chpcon.o chpevd.o chpev.o chpevx.o chpgst.o chpgvd.o chpgv.o chpgvx.o chprfs.o chpsv.o chpsvx.o chptrd.o chptrf.o chptri.o chptrs.o chsein.o chseqr.o clabrd.o clacgv.o clacn2.o clacon.o clacp2.o clacpy.o clacrm.o clacrt.o cladiv.o claed0.o claed7.o claed8.o claein.o claesy.o claev2.o clag2z.o cla_gbamv.o cla_gbrcond_c.o cla_gbrcond_x.o cla_gbrfsx_extended.o cla_gbrpvgrw.o cla_geamv.o cla_gercond_c.o cla_gercond_x.o cla_gerfsx_extended.o cla_gerpvgrw.o clags2.o clagtm.o cla_heamv.o clahef.o clahef_rook.o cla_hercond_c.o cla_hercond_x.o cla_herfsx_extended.o cla_herpvgrw.o clahqr.o clahr2.o clahrd.o claic1.o cla_lin_berr.o clals0.o clalsa.o clalsd.o clangb.o clange.o clangt.o clanhb.o clanhe.o clanhf.o clanhp.o clanhs.o clanht.o clansb.o clansp.o clansy.o clantb.o clantp.o clantr.o clapll.o clapmr.o clapmt.o cla_porcond_c.o cla_porcond_x.o cla_porfsx_extended.o cla_porpvgrw.o claqgb.o claqge.o claqhb.o claqhe.o claqhp.o claqp2.o claqps.o claqr0.o claqr1.o claqr2.o claqr3.o claqr4.o claqr5.o claqsb.o claqsp.o claqsy.o clar1v.o clar2v.o clarcm.o clarfb.o clarf.o clarfg.o clarfgp.o clarft.o clarfx.o clargv.o clarnv.o clarrv.o clarscl2.o clartg.o clartv.o clarzb.o clarz.o clarzt.o clascl2.o clascl.o claset.o clasr.o classq.o claswp.o cla_syamv.o clasyf.o clasyf_rook.o cla_syrcond_c.o cla_syrcond_x.o cla_syrfsx_extended.o cla_syrpvgrw.o clatbs.o clatdf.o clatps.o clatrd.o clatrs.o clatrz.o clatzm.o clauu2.o clauum.o cla_wwaddw.o cpbcon.o cpbequ.o cpbrfs.o cpbstf.o cpbsv.o cpbsvx.o cpbtf2.o cpbtrf.o cpbtrs.o cpftrf.o cpftri.o cpftrs.o cpocon.o cpoequb.o cpoequ.o cporfs.o cporfsx.o cposv.o cposvx.o cposvxx.o cpotf2.o cpotrf.o cpotri.o cpotrs.o cppcon.o cppequ.o cpprfs.o cppsv.o cppsvx.o cpptrf.o cpptri.o cpptrs.o cpstf2.o cpstrf.o cptcon.o cpteqr.o cptrfs.o cptsv.o cptsvx.o cpttrf.o cpttrs.o cptts2.o crot.o cspcon.o cspmv.o cspr.o csprfs.o cspsv.o cspsvx.o csptrf.o csptri.o csptrs.o csrscl.o cstedc.o cstegr.o cstein.o cstemr.o csteqr.o csycon.o csycon_rook.o csyconv.o csyequb.o csymv.o csyr.o csyrfs.o csyrfsx.o csysv.o csysv_rook.o csysvx.o csysvxx.o csyswapr.o csytf2.o csytf2_rook.o csytrf.o csytrf_rook.o csytri2.o csytri2x.o csytri.o csytri_rook.o csytrs2.o csytrs.o csytrs_rook.o ctbcon.o ctbrfs.o ctbtrs.o ctfsm.o ctftri.o ctfttp.o ctfttr.o ctgevc.o ctgex2.o ctgexc.o ctgsen.o ctgsja.o ctgsna.o ctgsy2.o ctgsyl.o ctpcon.o ctpmqrt.o ctpqrt2.o ctpqrt.o ctprfb.o ctprfs.o ctptri.o ctptrs.o ctpttf.o ctpttr.o ctrcon.o ctrevc.o ctrexc.o ctrrfs.o ctrsen.o ctrsna.o ctrsyl.o ctrti2.o ctrtri.o ctrtrs.o ctrttf.o ctrttp.o ctzrqf.o ctzrzf.o cunbdb1.o cunbdb2.o cunbdb3.o cunbdb4.o cunbdb5.o cunbdb6.o cunbdb.o cuncsd2by1.o cuncsd.o cung2l.o cung2r.o cungbr.o cunghr.o cungl2.o cunglq.o cungql.o cungqr.o cungr2.o cungrq.o cungtr.o cunm2l.o cunm2r.o cunmbr.o cunmhr.o cunml2.o cunmlq.o cunmql.o cunmqr.o cunmr2.o cunmr3.o cunmrq.o cunmrz.o cunmtr.o cupgtr.o cupmtr.o dbbcsd.o dbdsdc.o dbdsqr.o ddisna.o dgbbrd.o dgbcon.o dgbequb.o dgbequ.o dgbrfs.o dgbrfsx.o dgbsv.o dgbsvx.o dgbsvxx.o dgbtf2.o dgbtrf.o dgbtrs.o dgebak.o dgebal.o dgebd2.o dgebrd.o dgecon.o dgeequb.o dgeequ.o dgees.o dgeesx.o dgeev.o dgeevx.o dgegs.o dgegv.o dgehd2.o dgehrd.o dgejsv.o dgelq2.o dgelqf.o dgelsd.o dgels.o dgelss.o dgelsx.o dgelsy.o dgemqrt.o dgeql2.o dgeqlf.o dgeqp3.o dgeqpf.o dgeqr2.o dgeqr2p.o dgeqrf.o dgeqrfp.o dgeqrt2.o dgeqrt3.o dgeqrt.o dgerfs.o dgerfsx.o dgerq2.o dgerqf.o dgesc2.o dgesdd.o dgesvd.o dgesv.o dgesvj.o dgesvx.o dgesvxx.o dgetc2.o dgetf2.o dgetrf.o dgetri.o dgetrs.o dggbak.o dggbal.o dgges.o dggesx.o dggev.o dggevx.o dggglm.o dgghrd.o dgglse.o dggqrf.o dggrqf.o dggsvd.o dggsvp.o dgsvj0.o dgsvj1.o dgtcon.o dgtrfs.o dgtsv.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o dhgeqz.o dhsein.o dhseqr.o disnan.o dlabad.o dlabrd.o dlacn2.o dlacon.o dlacpy.o dladiv.o dlae2.o dlaebz.o dlaed0.o dlaed1.o dlaed2.o dlaed3.o dlaed4.o dlaed5.o dlaed6.o dlaed7.o dlaed8.o dlaed9.o dlaeda.o dlaein.o dlaev2.o dlaexc.o dlag2.o dlag2s.o dla_gbamv.o dla_gbrcond.o dla_gbrfsx_extended.o dla_gbrpvgrw.o dla_geamv.o dla_gercond.o dla_gerfsx_extended.o dla_gerpvgrw.o dlags2.o dlagtf.o dlagtm.o dlagts.o dlagv2.o dlahqr.o dlahr2.o dlahrd.o dlaic1.o dlaisnan.o dla_lin_berr.o dlaln2.o dlals0.o dlalsa.o dlalsd.o dlamrg.o dlaneg.o dlangb.o dlange.o dlangt.o dlanhs.o dlansb.o dlansf.o dlansp.o dlanst.o dlansy.o dlantb.o dlantp.o dlantr.o dlanv2.o dlapll.o dlapmr.o dlapmt.o dla_porcond.o dla_porfsx_extended.o dla_porpvgrw.o dlapy2.o dlapy3.o dlaqgb.o dlaqge.o dlaqp2.o dlaqps.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlaqsb.o dlaqsp.o dlaqsy.o dlaqtr.o dlar1v.o dlar2v.o dlarfb.o dlarf.o dlarfg.o dlarfgp.o dlarft.o dlarfx.o dlargv.o dlarnv.o dlarra.o dlarrb.o dlarrc.o dlarrd.o dlarre.o dlarrf.o dlarrj.o dlarrk.o dlarrr.o dlarrv.o dlarscl2.o dlartg.o dlartgp.o dlartgs.o dlartv.o dlaruv.o dlarzb.o dlarz.o dlarzt.o dlas2.o dlascl2.o dlascl.o dlasd0.o dlasd1.o dlasd2.o dlasd3.o dlasd4.o dlasd5.o dlasd6.o dlasd7.o dlasd8.o dlasda.o dlasdq.o dlasdt.o dlaset.o dlasq1.o dlasq2.o dlasq3.o dlasq4.o dlasq5.o dlasq6.o dlasr.o dlasrt.o dlassq.o dlasv2.o dlaswp.o dlasy2.o dla_syamv.o dlasyf.o dlasyf_rook.o dla_syrcond.o dla_syrfsx_extended.o dla_syrpvgrw.o dlat2s.o dlatbs.o dlatdf.o dlatps.o dlatrd.o dlatrs.o dlatrz.o dlatzm.o dlauu2.o dlauum.o dla_wwaddw.o dlazq3.o dlazq4.o dopgtr.o dopmtr.o dorbdb1.o dorbdb2.o dorbdb3.o dorbdb4.o dorbdb5.o dorbdb6.o dorbdb.o dorcsd2by1.o dorcsd.o dorg2l.o dorg2r.o dorgbr.o dorghr.o dorgl2.o dorglq.o dorgql.o dorgqr.o dorgr2.o dorgrq.o dorgtr.o dorm2l.o dorm2r.o dormbr.o dormhr.o dorml2.o dormlq.o dormql.o dormqr.o dormr2.o dormr3.o dormrq.o dormrz.o dormtr.o dpbcon.o dpbequ.o dpbrfs.o dpbstf.o dpbsv.o dpbsvx.o dpbtf2.o dpbtrf.o dpbtrs.o dpftrf.o dpftri.o dpftrs.o dpocon.o dpoequb.o dpoequ.o dporfs.o dporfsx.o dposv.o dposvx.o dposvxx.o dpotf2.o dpotrf.o dpotri.o dpotrs.o dppcon.o dppequ.o dpprfs.o dppsv.o dppsvx.o dpptrf.o dpptri.o dpptrs.o dpstf2.o dpstrf.o dptcon.o dpteqr.o dptrfs.o dptsv.o dptsvx.o dpttrf.o dpttrs.o dptts2.o drscl.o dsbevd.o dsbev.o dsbevx.o dsbgst.o dsbgvd.o dsbgv.o dsbgvx.o dsbtrd.o dsfrk.o dsgesv.o dspcon.o dspevd.o dspev.o dspevx.o dspgst.o dspgvd.o dspgv.o dspgvx.o dsposv.o dsprfs.o dspsv.o dspsvx.o dsptrd.o dsptrf.o dsptri.o dsptrs.o dstebz.o dstedc.o dstegr.o dstein.o dstemr.o dsteqr.o dsterf.o dstevd.o dstev.o dstevr.o dstevx.o dsycon.o dsycon_rook.o dsyconv.o dsyequb.o dsyevd.o dsyev.o dsyevr.o dsyevx.o dsygs2.o dsygst.o dsygvd.o dsygv.o dsygvx.o dsyrfs.o dsyrfsx.o dsysv.o dsysv_rook.o dsysvx.o dsysvxx.o dsyswapr.o dsytd2.o dsytf2.o dsytf2_rook.o dsytrd.o dsytrf.o dsytrf_rook.o dsytri2.o dsytri2x.o dsytri.o dsytri_rook.o dsytrs2.o dsytrs.o dsytrs_rook.o dtbcon.o dtbrfs.o dtbtrs.o dtfsm.o dtftri.o dtfttp.o dtfttr.o dtgevc.o dtgex2.o dtgexc.o dtgsen.o dtgsja.o dtgsna.o dtgsy2.o dtgsyl.o dtpcon.o dtpmqrt.o dtpqrt2.o dtpqrt.o dtprfb.o dtprfs.o dtptri.o dtptrs.o dtpttf.o dtpttr.o dtrcon.o dtrevc.o dtrexc.o dtrrfs.o dtrsen.o dtrsna.o dtrsyl.o dtrti2.o dtrtri.o dtrtrs.o dtrttf.o dtrttp.o dtzrqf.o dtzrzf.o dzsum1.o icmax1.o ieeeck.o ilaclc.o ilaclr.o iladiag.o iladlc.o iladlr.o ilaenv.o ilaprec.o ilaslc.o ilaslr.o ilatrans.o ilauplo.o ilaver.o ilazlc.o ilazlr.o iparmq.o izmax1.o lsamen.o sbbcsd.o sbdsdc.o sbdsqr.o scsum1.o sdisna.o sgbbrd.o sgbcon.o sgbequb.o sgbequ.o sgbrfs.o sgbrfsx.o sgbsv.o sgbsvx.o sgbsvxx.o sgbtf2.o sgbtrf.o sgbtrs.o sgebak.o sgebal.o sgebd2.o sgebrd.o sgecon.o sgeequb.o sgeequ.o sgees.o sgeesx.o sgeev.o sgeevx.o sgegs.o sgegv.o sgehd2.o sgehrd.o sgejsv.o sgelq2.o sgelqf.o sgelsd.o sgels.o sgelss.o sgelsx.o sgelsy.o sgemqrt.o sgeql2.o sgeqlf.o sgeqp3.o sgeqpf.o sgeqr2.o sgeqr2p.o sgeqrf.o sgeqrfp.o sgeqrt2.o sgeqrt3.o sgeqrt.o sgerfs.o sgerfsx.o sgerq2.o sgerqf.o sgesc2.o sgesdd.o sgesvd.o sgesv.o sgesvj.o sgesvx.o sgesvxx.o sgetc2.o sgetf2.o sgetrf.o sgetri.o sgetrs.o sggbak.o sggbal.o sgges.o sggesx.o sggev.o sggevx.o sggglm.o sgghrd.o sgglse.o sggqrf.o sggrqf.o sggsvd.o sggsvp.o sgsvj0.o sgsvj1.o sgtcon.o sgtrfs.o sgtsv.o sgtsvx.o sgttrf.o sgttrs.o sgtts2.o shgeqz.o shsein.o shseqr.o sisnan.o slabad.o slabrd.o slacn2.o slacon.o slacpy.o sladiv.o slae2.o slaebz.o slaed0.o slaed1.o slaed2.o slaed3.o slaed4.o slaed5.o slaed6.o slaed7.o slaed8.o slaed9.o slaeda.o slaein.o slaev2.o slaexc.o slag2d.o slag2.o sla_gbamv.o sla_gbrcond.o sla_gbrfsx_extended.o sla_gbrpvgrw.o sla_geamv.o sla_gercond.o sla_gerfsx_extended.o sla_gerpvgrw.o slags2.o slagtf.o slagtm.o slagts.o slagv2.o slahqr.o slahr2.o slahrd.o slaic1.o slaisnan.o sla_lin_berr.o slaln2.o slals0.o slalsa.o slalsd.o slamrg.o slaneg.o slangb.o slange.o slangt.o slanhs.o slansb.o slansf.o slansp.o slanst.o slansy.o slantb.o slantp.o slantr.o slanv2.o slapll.o slapmr.o slapmt.o sla_porcond.o sla_porfsx_extended.o sla_porpvgrw.o slapy2.o slapy3.o slaqgb.o slaqge.o slaqp2.o slaqps.o slaqr0.o slaqr1.o slaqr2.o slaqr3.o slaqr4.o slaqr5.o slaqsb.o slaqsp.o slaqsy.o slaqtr.o slar1v.o slar2v.o slarfb.o slarf.o slarfg.o slarfgp.o slarft.o slarfx.o slargv.o slarnv.o slarra.o slarrb.o slarrc.o slarrd.o slarre.o slarrf.o slarrj.o slarrk.o slarrr.o slarrv.o slarscl2.o slartg.o slartgp.o slartgs.o slartv.o slaruv.o slarzb.o slarz.o slarzt.o slas2.o slascl2.o slascl.o slasd0.o slasd1.o slasd2.o slasd3.o slasd4.o slasd5.o slasd6.o slasd7.o slasd8.o slasda.o slasdq.o slasdt.o slaset.o slasq1.o slasq2.o slasq3.o slasq4.o slasq5.o slasq6.o slasr.o slasrt.o slassq.o slasv2.o slaswp.o slasy2.o sla_syamv.o slasyf.o slasyf_rook.o sla_syrcond.o sla_syrfsx_extended.o sla_syrpvgrw.o slatbs.o slatdf.o slatps.o slatrd.o slatrs.o slatrz.o slatzm.o slauu2.o slauum.o sla_wwaddw.o slazq3.o slazq4.o sopgtr.o sopmtr.o sorbdb1.o sorbdb2.o sorbdb3.o sorbdb4.o sorbdb5.o sorbdb6.o sorbdb.o sorcsd2by1.o sorcsd.o sorg2l.o sorg2r.o sorgbr.o sorghr.o sorgl2.o sorglq.o sorgql.o sorgqr.o sorgr2.o sorgrq.o sorgtr.o sorm2l.o sorm2r.o sormbr.o sormhr.o sorml2.o sormlq.o sormql.o sormqr.o sormr2.o sormr3.o sormrq.o sormrz.o sormtr.o spbcon.o spbequ.o spbrfs.o spbstf.o spbsv.o spbsvx.o spbtf2.o spbtrf.o spbtrs.o spftrf.o spftri.o spftrs.o spocon.o spoequb.o spoequ.o sporfs.o sporfsx.o sposv.o sposvx.o sposvxx.o spotf2.o spotrf.o spotri.o spotrs.o sppcon.o sppequ.o spprfs.o sppsv.o sppsvx.o spptrf.o spptri.o spptrs.o spstf2.o spstrf.o sptcon.o spteqr.o sptrfs.o sptsv.o sptsvx.o spttrf.o spttrs.o sptts2.o srscl.o ssbevd.o ssbev.o ssbevx.o ssbgst.o ssbgvd.o ssbgv.o ssbgvx.o ssbtrd.o ssfrk.o sspcon.o sspevd.o sspev.o sspevx.o sspgst.o sspgvd.o sspgv.o sspgvx.o ssprfs.o sspsv.o sspsvx.o ssptrd.o ssptrf.o ssptri.o ssptrs.o sstebz.o sstedc.o sstegr.o sstein.o sstemr.o ssteqr.o ssterf.o sstevd.o sstev.o sstevr.o sstevx.o ssycon.o ssycon_rook.o ssyconv.o ssyequb.o ssyevd.o ssyev.o ssyevr.o ssyevx.o ssygs2.o ssygst.o ssygvd.o ssygv.o ssygvx.o ssyrfs.o ssyrfsx.o ssysv.o ssysv_rook.o ssysvx.o ssysvxx.o ssyswapr.o ssytd2.o ssytf2.o ssytf2_rook.o ssytrd.o ssytrf.o ssytrf_rook.o ssytri2.o ssytri2x.o ssytri.o ssytri_rook.o ssytrs2.o ssytrs.o ssytrs_rook.o stbcon.o stbrfs.o stbtrs.o stfsm.o stftri.o stfttp.o stfttr.o stgevc.o stgex2.o stgexc.o stgsen.o stgsja.o stgsna.o stgsy2.o stgsyl.o stpcon.o stpmqrt.o stpqrt2.o stpqrt.o stprfb.o stprfs.o stptri.o stptrs.o stpttf.o stpttr.o strcon.o strevc.o strexc.o strrfs.o strsen.o strsna.o strsyl.o strti2.o strtri.o strtrs.o strttf.o strttp.o stzrqf.o stzrzf.o zbbcsd.o zbdsqr.o zcgesv.o zcposv.o zdrscl.o zgbbrd.o zgbcon.o zgbequb.o zgbequ.o zgbrfs.o zgbrfsx.o zgbsv.o zgbsvx.o zgbsvxx.o zgbtf2.o zgbtrf.o zgbtrs.o zgebak.o zgebal.o zgebd2.o zgebrd.o zgecon.o zgeequb.o zgeequ.o zgees.o zgeesx.o zgeev.o zgeevx.o zgegs.o zgegv.o zgehd2.o zgehrd.o zgelq2.o zgelqf.o zgelsd.o zgels.o zgelss.o zgelsx.o zgelsy.o zgemqrt.o zgeql2.o zgeqlf.o zgeqp3.o zgeqpf.o zgeqr2.o zgeqr2p.o zgeqrf.o zgeqrfp.o zgeqrt2.o zgeqrt3.o zgeqrt.o zgerfs.o zgerfsx.o zgerq2.o zgerqf.o zgesc2.o zgesdd.o zgesvd.o zgesv.o zgesvx.o zgesvxx.o zgetc2.o zgetf2.o zgetrf.o zgetri.o zgetrs.o zggbak.o zggbal.o zgges.o zggesx.o zggev.o zggevx.o zggglm.o zgghrd.o zgglse.o zggqrf.o zggrqf.o zggsvd.o zggsvp.o zgtcon.o zgtrfs.o zgtsv.o zgtsvx.o zgttrf.o zgttrs.o zgtts2.o zhbevd.o zhbev.o zhbevx.o zhbgst.o zhbgvd.o zhbgv.o zhbgvx.o zhbtrd.o zhecon.o zhecon_rook.o zheequb.o zheevd.o zheev.o zheevr.o zheevx.o zhegs2.o zhegst.o zhegvd.o zhegv.o zhegvx.o zherfs.o zherfsx.o zhesv.o zhesv_rook.o zhesvx.o zhesvxx.o zheswapr.o zhetd2.o zhetf2.o zhetf2_rook.o zhetrd.o zhetrf.o zhetrf_rook.o zhetri2.o zhetri2x.o zhetri.o zhetri_rook.o zhetrs2.o zhetrs.o zhetrs_rook.o zhfrk.o zhgeqz.o zhpcon.o zhpevd.o zhpev.o zhpevx.o zhpgst.o zhpgvd.o zhpgv.o zhpgvx.o zhprfs.o zhpsv.o zhpsvx.o zhptrd.o zhptrf.o zhptri.o zhptrs.o zhsein.o zhseqr.o zlabrd.o zlacgv.o zlacn2.o zlacon.o zlacp2.o zlacpy.o zlacrm.o zlacrt.o zladiv.o zlaed0.o zlaed7.o zlaed8.o zlaein.o zlaesy.o zlaev2.o zlag2c.o zla_gbamv.o zla_gbrcond_c.o zla_gbrcond_x.o zla_gbrfsx_extended.o zla_gbrpvgrw.o zla_geamv.o zla_gercond_c.o zla_gercond_x.o zla_gerfsx_extended.o zla_gerpvgrw.o zlags2.o zlagtm.o zla_heamv.o zlahef.o zlahef_rook.o zla_hercond_c.o zla_hercond_x.o zla_herfsx_extended.o zla_herpvgrw.o zlahqr.o zlahr2.o zlahrd.o zlaic1.o zla_lin_berr.o zlals0.o zlalsa.o zlalsd.o zlangb.o zlange.o zlangt.o zlanhb.o zlanhe.o zlanhf.o zlanhp.o zlanhs.o zlanht.o zlansb.o zlansp.o zlansy.o zlantb.o zlantp.o zlantr.o zlapll.o zlapmr.o zlapmt.o zla_porcond_c.o zla_porcond_x.o zla_porfsx_extended.o zla_porpvgrw.o zlaqgb.o zlaqge.o zlaqhb.o zlaqhe.o zlaqhp.o zlaqp2.o zlaqps.o zlaqr0.o zlaqr1.o zlaqr2.o zlaqr3.o zlaqr4.o zlaqr5.o zlaqsb.o zlaqsp.o zlaqsy.o zlar1v.o zlar2v.o zlarcm.o zlarfb.o zlarf.o zlarfg.o zlarfgp.o zlarft.o zlarfx.o zlargv.o zlarnv.o zlarrv.o zlarscl2.o zlartg.o zlartv.o zlarzb.o zlarz.o zlarzt.o zlascl2.o zlascl.o zlaset.o zlasr.o zlassq.o zlaswp.o zla_syamv.o zlasyf.o zlasyf_rook.o zla_syrcond_c.o zla_syrcond_x.o zla_syrfsx_extended.o zla_syrpvgrw.o zlat2c.o zlatbs.o zlatdf.o zlatps.o zlatrd.o zlatrs.o zlatrz.o zlatzm.o zlauu2.o zlauum.o zla_wwaddw.o zpbcon.o zpbequ.o zpbrfs.o zpbstf.o zpbsv.o zpbsvx.o zpbtf2.o zpbtrf.o zpbtrs.o zpftrf.o zpftri.o zpftrs.o zpocon.o zpoequb.o zpoequ.o zporfs.o zporfsx.o zposv.o zposvx.o zposvxx.o zpotf2.o zpotrf.o zpotri.o zpotrs.o zppcon.o zppequ.o zpprfs.o zppsv.o zppsvx.o zpptrf.o zpptri.o zpptrs.o zpstf2.o zpstrf.o zptcon.o zpteqr.o zptrfs.o zptsv.o zptsvx.o zpttrf.o zpttrs.o zptts2.o zrot.o zspcon.o zspmv.o zspr.o zsprfs.o zspsv.o zspsvx.o zsptrf.o zsptri.o zsptrs.o zstedc.o zstegr.o zstein.o zstemr.o zsteqr.o zsycon.o zsycon_rook.o zsyconv.o zsyequb.o zsymv.o zsyr.o zsyrfs.o zsyrfsx.o zsysv.o zsysv_rook.o zsysvx.o zsysvxx.o zsyswapr.o zsytf2.o zsytf2_rook.o zsytrf.o zsytrf_rook.o zsytri2.o zsytri2x.o zsytri.o zsytri_rook.o zsytrs2.o zsytrs.o zsytrs_rook.o ztbcon.o ztbrfs.o ztbtrs.o ztfsm.o ztftri.o ztfttp.o ztfttr.o ztgevc.o ztgex2.o ztgexc.o ztgsen.o ztgsja.o ztgsna.o ztgsy2.o ztgsyl.o ztpcon.o ztpmqrt.o ztpqrt2.o ztpqrt.o ztprfb.o ztprfs.o ztptri.o ztptrs.o ztpttf.o ztpttr.o ztrcon.o ztrevc.o ztrexc.o ztrrfs.o ztrsen.o ztrsna.o ztrsyl.o ztrti2.o ztrtri.o ztrtrs.o ztrttf.o ztrttp.o ztzrqf.o ztzrzf.o zunbdb1.o zunbdb2.o zunbdb3.o zunbdb4.o zunbdb5.o zunbdb6.o zunbdb.o zuncsd2by1.o zuncsd.o zung2l.o zung2r.o zungbr.o zunghr.o zungl2.o zunglq.o zungql.o zungqr.o zungr2.o zungrq.o zungtr.o zunm2l.o zunm2r.o zunmbr.o zunmhr.o zunml2.o zunmlq.o zunmql.o zunmqr.o zunmr2.o zunmr3.o zunmrq.o zunmrz.o zunmtr.o zupgtr.o zupmtr.o make[1]: Leaving directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2/lapack' cd lapack-extra; make lib FC="/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" FOPTFLAGS="-MT -Z7 -fpp -openmp " FNOOPT="-Od -MT" AR="/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" AR_FLAGS="-a" RM="/usr/bin/rm -f" LIBNAME="libflapack.lib" make[1]: Entering directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2/lapack-extra' /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -Od -MT slamch.f dlamch.f /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -MT -Z7 -fpp -openmp ilaver.f /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a ../libflapack.lib slamch.o dlamch.o ilaver.o Replacing ilaver.o /usr/bin/rm -f slamch.o dlamch.o ilaver.o make[1]: Leaving directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2/lapack-extra' /usr/bin/true libflapack.lib Executing: cd /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2 && mv -f libfblas.lib libflapack.lib /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib Executing: cd /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/externalpackages/fblaslapack-3.4.2 && cp -f tmpmakefile /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/conf/BlasLapack ================================================================================ Checking for a functional BLAS and LAPACK in Downloaded BLAS/LAPACK library ================================================================================ TEST checkLib from config.packages.BlasLapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/BlasLapack.py:112) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:112) Checking for BLAS and LAPACK symbols Checking for functions [DDOT] in library ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libfblas.a'] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char DDOT(); static void _check_DDOT() { DDOT(); } int main() { _check_DDOT();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lfblas -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions [DGETRS] in library ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libflapack.a'] ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libfblas.a', '-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char DGETRS(); static void _check_DGETRS() { DGETRS(); } int main() { _check_DGETRS();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lfblas -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions [DGEEV] in library ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libflapack.a'] ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libfblas.a', '-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char DGEEV(); static void _check_DGEEV() { DGEEV(); } int main() { _check_DGEEV();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lfblas -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFLAPACK" to "1" Popping language C Found Fortran mangling on BLAS/LAPACK which is caps Defined "BLASLAPACK_CAPS" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/BlasLapack.py:553) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:553) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/BlasLapack.py:499) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:499) Check for the IBM ESSL library Checking for functions [iessl] in library ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libflapack.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol iessl referenced in function _check_iessl C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol iessl referenced in function _check_iessl C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/BlasLapack.py:505) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:505) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libflapack.a'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol ipessl referenced in function _check_ipessl C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol ipessl referenced in function _check_ipessl C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/BlasLapack.py:518) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:518) Check for missing LAPACK routines Checking for functions [DTRSEN DGERFS DGGES DTGSEN DGESVD DGETRF DGETRS DGEEV DGELSS DSYEV DSYEVX DSYGV DSYGVX DPOTRF DPOTRS DSTEBZ DPTTRF DPTTRS DSTEIN DORGQR DGEQRF DGESV DHSEQR DSTEQR] in library ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libflapack.a'] ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libfblas.a', '-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char DTRSEN(); static void _check_DTRSEN() { DTRSEN(); } char DGERFS(); static void _check_DGERFS() { DGERFS(); } char DGGES(); static void _check_DGGES() { DGGES(); } char DTGSEN(); static void _check_DTGSEN() { DTGSEN(); } char DGESVD(); static void _check_DGESVD() { DGESVD(); } char DGETRF(); static void _check_DGETRF() { DGETRF(); } char DGETRS(); static void _check_DGETRS() { DGETRS(); } char DGEEV(); static void _check_DGEEV() { DGEEV(); } char DGELSS(); static void _check_DGELSS() { DGELSS(); } char DSYEV(); static void _check_DSYEV() { DSYEV(); } char DSYEVX(); static void _check_DSYEVX() { DSYEVX(); } char DSYGV(); static void _check_DSYGV() { DSYGV(); } char DSYGVX(); static void _check_DSYGVX() { DSYGVX(); } char DPOTRF(); static void _check_DPOTRF() { DPOTRF(); } char DPOTRS(); static void _check_DPOTRS() { DPOTRS(); } char DSTEBZ(); static void _check_DSTEBZ() { DSTEBZ(); } char DPTTRF(); static void _check_DPTTRF() { DPTTRF(); } char DPTTRS(); static void _check_DPTTRS() { DPTTRS(); } char DSTEIN(); static void _check_DSTEIN() { DSTEIN(); } char DORGQR(); static void _check_DORGQR() { DORGQR(); } char DGEQRF(); static void _check_DGEQRF() { DGEQRF(); } char DGESV(); static void _check_DGESV() { DGESV(); } char DHSEQR(); static void _check_DHSEQR() { DHSEQR(); } char DSTEQR(); static void _check_DSTEQR() { DSTEQR(); } int main() { _check_DTRSEN(); _check_DGERFS(); _check_DGGES(); _check_DTGSEN(); _check_DGESVD(); _check_DGETRF(); _check_DGETRS(); _check_DGEEV(); _check_DGELSS(); _check_DSYEV(); _check_DSYEVX(); _check_DSYGV(); _check_DSYGVX(); _check_DPOTRF(); _check_DPOTRS(); _check_DSTEBZ(); _check_DPTTRF(); _check_DPTTRS(); _check_DSTEIN(); _check_DORGQR(); _check_DGEQRF(); _check_DGESV(); _check_DHSEQR(); _check_DSTEQR();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lfblas -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/BlasLapack.py:531) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:531) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for functions [LSAME] in library ['/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libflapack.a', '/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib/libfblas.a', '-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char LSAME(); static void _check_LSAME() { LSAME(); } int main() { _check_LSAME();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lfblas -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBFLAPACK" to "1" Defined "HAVE_LIBFBLAS" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.UMFPACK(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.UMFPACK(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.CHOLMOD(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.CHOLMOD(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.spai(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PaStiX(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.PaStiX(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pARMS(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.pARMS(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.oski(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.oski(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.scalapack(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.scalapack(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.ml(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.elemental(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.elemental(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.clique(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.clique(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureCPURelax from config.atomics(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-eHpoqW/config.atomics Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.atomics/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.atomics/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile'Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.atomics/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.atomics/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'HMT_low' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'HMT_medium' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: '__asm__' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2146: syntax error : missing ';' before identifier '__volatile__' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ')' before ':' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2059: syntax error : ')' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'HMT_low' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'HMT_medium' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: '__asm__' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2146: syntax error : missing ';' before identifier '__volatile__' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ')' before ':' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2059: syntax error : ')'Source: #include "confdefs.h" #include "conffix.h" int main() { do { HMT_low; HMT_medium; __asm__ __volatile__ ("":::"memory"); } while (0); return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.atomics/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.atomics/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: '__asm__' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2146: syntax error : missing ';' before identifier '__volatile__' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ')' before ':' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2059: syntax error : ')' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: '__asm__' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2146: syntax error : missing ';' before identifier '__volatile__' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ')' before ':' C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2059: syntax error : ')'Source: #include "confdefs.h" #include "conffix.h" int main() { __asm__ __volatile__ ("":::"memory");; return 0; } ================================================================================ TEST configureMemoryBarriers from config.atomics(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.atomics/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.atomics/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile'Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.atomics/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.atomics/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile'Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.atomics/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.atomics/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2065: 'asm' : undeclared identifier C:\cygwin\tmp\PEDA80~1\CONFIG~1.ATO\conftest.c(5) : error C2143: syntax error : missing ';' before 'volatile'Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:741) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:741) All intermediate test results are stored in /tmp/petsc-eHpoqW/PETSc.Configure Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:588) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:588) Sees if there are any prefetch functions supported Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Ws2_32.lib Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language C ================================================================================ TEST configureUnused from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:658) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:658) Sees if __attribute((unused)) is supported Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2085: 'myfunc' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ';' before 'type' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2085: 'name' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ';' before '{' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : warning C4047: 'return' : 'int (__cdecl *)()' differs in levels of indirection from 'int' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2065: 'unused' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2146: syntax error : missing ';' before identifier 'atype' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2275: 'atype' : illegal use of this type as an expression C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(8) : see declaration of 'atype' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2085: 'myfunc' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ';' before 'type' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2085: 'name' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ';' before '{' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : warning C4047: 'return' : 'int (__cdecl *)()' differs in levels of indirection from 'int' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2065: 'unused' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2146: syntax error : missing ';' before identifier 'atype' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2275: 'atype' : illegal use of this type as an expression C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(8) : see declaration of 'atype' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(9) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Compile failed inside link Defined "UNUSED" to " " Popping language C ================================================================================ TEST configureDeprecated from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:670) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:670) Check if __attribute((deprecated)) is supported Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2085: 'myfunc' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ';' before '{' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : warning C4047: 'return' : 'int (__cdecl *)()' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ')' before '(' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2091: function returns function C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2059: syntax error : ')' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2085: 'myfunc' : not in formal parameter list C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : error C2143: syntax error : missing ';' before '{' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(3) : warning C4047: 'return' : 'int (__cdecl *)()' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to " " Popping language C ================================================================================ TEST configureExpect from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:690) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:690) Sees if the __builtin_expect directive is supported Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol __builtin_expect referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol __builtin_expect referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST configureFunctionName from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:697) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:697) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(5) : error C2065: '__func__' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(5) : error C2109: subscript requires array or pointer type Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(5) : error C2065: '__func__' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(5) : error C2109: subscript requires array or pointer typeSource: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Compile failed inside link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__FUNCTION__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Ws2_32.lib Popping language C Defined "FUNCTION_NAME_C" to "__FUNCTION__" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -openmp -TP /tmp/petsc-eHpoqW/PETSc.Configure/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.cc(5) : error C2065: '__func__' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.cc(5) : error C2065: '__func__' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Compile failed inside link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -GR -EHsc -Z7 -Zm200 -openmp -TP /tmp/petsc-eHpoqW/PETSc.Configure/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__FUNCTION__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -GR -EHsc -Z7 -Zm200 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__FUNCTION__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:719) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:719) Determine what to use for uintptr_t Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language C ================================================================================ TEST configureSolaris from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:746) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:746) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:759) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:759) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:765) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:765) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBKERNEL32" to "1" Popping language C Adding ['Kernel32.lib'] to LIBS Defined "HAVE_WINDOWS_H" to "1" Defined "HAVE_GETCOMPUTERNAME" to "1" Defined "USE_WINDOWS_GRAPHICS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { LoadLibrary(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LOADLIBRARY" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { GetProcAddress(0,0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_GETPROCADDRESS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { FreeLibrary(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_FREELIBRARY" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { GetLastError(); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_GETLASTERROR" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { SetLastError(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_SETLASTERROR" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { QueryPerformanceCounter(0); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link Defined "USE_MICROSOFT_TIME" to "1" Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o Advapi32.lib Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBADVAPI32" to "1" Popping language C Adding ['Advapi32.lib'] to LIBS Defined "HAVE_GET_USER_NAME" to "1" Checking for functions [GetDC] in library ['User32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBUSER32" to "1" Popping language C Adding ['User32.lib'] to LIBS Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/config.types -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBGDI32" to "1" Popping language C Adding ['Gdi32.lib'] to LIBS Checking for type: int32_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.types/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(6) : error C2065: 'uid_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'u' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(6) : error C2065: 'u' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(6) : error C2065: 'uid_t' : undeclared identifier C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'u' C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(6) : error C2065: 'u' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Typedefed "int" to "uid_t" Typedefed "int" to "gid_t" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(8) : error C2065: 'R_OK' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(8) : error C2065: 'R_OK' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Compile failed inside link Defined "R_OK" to "04" Defined "W_OK" to "02" Defined "X_OK" to "01" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol S_ISDIR referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol S_ISDIR referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externals Defined "S_ISREG(a)" to "(((a)&_S_IFMT) == _S_IFREG)" Defined "S_ISDIR(a)" to "(((a)&_S_IFMT) == _S_IFDIR)" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-ehpoqw\petsc.configure\conftest.c(7) : warning C4700: uninitialized local variable 'a' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Defined "HAVE_LARGE_INTEGER_U" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "HAVE_O_BINARY" to "1" Defined "PATH_SEPARATOR" to "';'" Defined "DIR_SEPARATOR" to "'\\'" Defined "REPLACE_DIR_SEPARATOR" to "'/'" Defined "CANNOT_START_DEBUGGER" to "1" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:832) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:832) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST configureDefaultArch from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:848) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:848) ================================================================================ TEST configureScript from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:865) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:865) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:902) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:902) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['- at echo "Now to check if the libraries are working do:"', '- at echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '- at echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:916) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:916) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:921) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:921) Checking for functions [FLUSH] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char FLUSH(); static void _check_FLUSH() { FLUSH(); } int main() { _check_FLUSH();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol FLUSH referenced in function _check_FLUSH C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol FLUSH referenced in function _check_FLUSH C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [FLUSH_] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/config.libraries/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char FLUSH_(); static void _check_FLUSH_() { FLUSH_(); } int main() { _check_FLUSH_();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/config.libraries/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol FLUSH_ referenced in function _check_FLUSH_ C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol FLUSH_ referenced in function _check_FLUSH_ C:\cygwin\tmp\PEDA80~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST configureFeatureTestMacros from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:644) TESTING: configureFeatureTestMacros from PETSc.Configure(config/PETSc/Configure.py:644) Checks if certain feature test macros are support Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST configureAtoll from PETSc.Configure(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/Configure.py:653) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:653) Checks if atoll exists Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol atoll referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol atoll referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o -I/tmp/petsc-eHpoqW/config.compilers -I/tmp/petsc-eHpoqW/config.headers -I/tmp/petsc-eHpoqW/PETSc.utilities.cacheDetails -I/tmp/petsc-eHpoqW/PETSc.utilities.missing -I/tmp/petsc-eHpoqW/PETSc.utilities.scalarTypes -I/tmp/petsc-eHpoqW/config.functions -I/tmp/petsc-eHpoqW/config.packages.MPI -I/tmp/petsc-eHpoqW/PETSc.packages.pthread -I/tmp/petsc-eHpoqW/PETSc.packages.openmp -I/tmp/petsc-eHpoqW/config.setCompilers -I/tmp/petsc-eHpoqW/config.atomics -I/tmp/petsc-eHpoqW/config.libraries -I/tmp/petsc-eHpoqW/PETSc.Configure -I/tmp/petsc-eHpoqW/config.types -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-eHpoqW/PETSc.Configure/conftest.exe -openmp -openmp -MT -wd4996 -Z7 -openmp /tmp/petsc-eHpoqW/PETSc.Configure/conftest.o Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol atoll referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol atoll referenced in function main C:\cygwin\tmp\PEDA80~1\PETSC~1.CON\conftest.exe : fatal error LNK1120: 1 unresolved externals Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -MT -wd4996 -Z7 -openmp " Popping language C Defined make macro "CPP_FLAGS" to " " Pushing language C Defined make macro "PCC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Defined make macro "PCC_FLAGS" to " -MT -wd4996 -Z7 -openmp " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Defined make macro "PCC_LINKER_FLAGS" to " -openmp -openmp -MT -wd4996 -Z7 -openmp" Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -MT -Z7 -fpp -openmp " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -V stdout: ifort: command line error: no files specified; for help type "ifort /help" Defined make macro "FC_LINKER" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Defined make macro "FC_LINKER_FLAGS" to " -openmp -openmp -MT -Z7 -fpp -openmp" Popping language FC Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-module:" Pushing language C Defined make macro "SL_LINKER" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language C Defined make macro "SL_LINKER_SUFFIX" to "" Defined "SLSUFFIX" to """" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Executing: CC -VV Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -lfblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_OPENMP" to "1" Defined make macro "OPENMP_LIB" to "" Defined make macro "OPENMP_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "/cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib" Defined make macro "MPI_INCLUDE" to "-I/cygdrive/c/Program\ Files/MPICH2/include" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lpetsc -lflapack -lfblas /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -lfblas /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib " Defined make macro "PETSC_CC_INCLUDES" to "-I/cygdrive/c/cygwin/packages/petsc-dev/include -I/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/include -I/cygdrive/c/Program\ Files/MPICH2/include" Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "PETSC_FC_INCLUDES" to "-I/cygdrive/c/cygwin/packages/petsc-dev/include -I/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/include -I/cygdrive/c/Program\ Files/MPICH2/include" Defined make macro "DESTDIR" to "/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized" Defined "LIB_DIR" to ""/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-cc=\"win32fe cl\" --with-fc=\"win32fe ifort\" --with-cxx=\"win32fe cl\" --download-f-blas-lapack --with-threadcomm --with-openmp --useThreads=0" Pushing language C Popping language C Pushing language FC Popping language FC Pushing language C Popping language C Pushing language FC Popping language FC Executing: ['/usr/bin/cmake', '--version'] stdout: cmake version 2.8.9 Pushing language C Popping language C Pushing language FC Popping language FC Pushing language Cxx Popping language Cxx Contents of initial cache file /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake : SET (CMAKE_C_COMPILER cl CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_C_FLAGS " -MT -wd4996 -Z7 -openmp " CACHE STRING "Dummy comment" FORCE) SET (PETSC_CUDA_HOST_FLAGS ,-MT,-wd4996,-Z7,-openmp CACHE STRING "Dummy comment" FORCE) SET (CMAKE_Fortran_COMPILER ifort CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_Fortran_FLAGS " -MT -Z7 -fpp -openmp " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_CXX_COMPILER cl CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_CXX_FLAGS " -MT -GR -EHsc -Z7 -Zm200 -openmp -TP " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_AR /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_RANLIB /usr/bin/true CACHE FILEPATH "Dummy comment" FORCE) SET (PETSC_WIN32FE /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe.exe "Dummy comment" FORCE) Removing: /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeCache.txt Removing: /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/2.8.9 Invoking: ['/usr/bin/cmake', '--trace', '--debug-output', '-C/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-mswin-c-optimized', '/cygdrive/c/cygwin/packages/petsc-dev', '-GUnix Makefiles'] Executing: ['/usr/bin/cmake', '--trace', '--debug-output', '-C/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-mswin-c-optimized', '/cygdrive/c/cygwin/packages/petsc-dev', '-GUnix Makefiles'] stdout: Running with trace output on. Running with debug output on. -- The C compiler identification is MSVC 16.0.30319.1 Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt -- Check for working C compiler: /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt -- Check for working C compiler: /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe -- broken Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt -- Configuring incomplete, errors occurred! =============================================================================== CMake setup incomplete (status 256), falling back to legacy build =============================================================================== Output: Running with trace output on. Running with debug output on. -- The C compiler identification is MSVC 16.0.30319.1 Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt -- Check for working C compiler: /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt -- Check for working C compiler: /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe -- broken Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt -- Configuring incomplete, errors occurred! Error: loading initial cache file /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(1): SET(CMAKE_C_COMPILER cl CACHE FILEPATH Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(2): SET(CMAKE_C_FLAGS -MT -wd4996 -Z7 -openmp CACHE STRING Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(3): SET(PETSC_CUDA_HOST_FLAGS ,-MT,-wd4996,-Z7,-openmp CACHE STRING Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(4): SET(CMAKE_Fortran_COMPILER ifort CACHE FILEPATH Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(5): SET(CMAKE_Fortran_FLAGS -MT -Z7 -fpp -openmp CACHE STRING Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(6): SET(CMAKE_CXX_COMPILER cl CACHE FILEPATH Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(7): SET(CMAKE_CXX_FLAGS -MT -GR -EHsc -Z7 -Zm200 -openmp -TP CACHE STRING Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(8): SET(CMAKE_AR /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib CACHE FILEPATH Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(9): SET(CMAKE_RANLIB /usr/bin/true CACHE FILEPATH Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/initial_cache_file.cmake(10): SET(PETSC_WIN32FE /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe.exe Dummy comment FORCE ) /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt(1): cmake_minimum_required(VERSION 2.6.2 ) Called from: [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt(2): project(PETSc C ) Called from: [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeUnixFindMake.cmake(15): FIND_PROGRAM(CMAKE_MAKE_PROGRAM NAMES gmake make smake ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeUnixFindMake.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeUnixFindMake.cmake(16): MARK_AS_ADVANCED(CMAKE_MAKE_PROGRAM ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeUnixFindMake.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(45): IF(CMAKE_HOST_UNIX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(46): FIND_PROGRAM(CMAKE_UNAME uname /bin /usr/bin /usr/local/bin ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(47): IF(CMAKE_UNAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(48): EXEC_PROGRAM(uname ARGS -s OUTPUT_VARIABLE CMAKE_HOST_SYSTEM_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(49): EXEC_PROGRAM(uname ARGS -r OUTPUT_VARIABLE CMAKE_HOST_SYSTEM_VERSION ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(50): IF(CMAKE_HOST_SYSTEM_NAME MATCHES Linux|CYGWIN.* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(51): EXEC_PROGRAM(uname ARGS -m OUTPUT_VARIABLE CMAKE_HOST_SYSTEM_PROCESSOR RETURN_VALUE val ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(65): IF(${val} GREATER 0 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(68): SET(CMAKE_UNAME ${CMAKE_UNAME} CACHE INTERNAL uname command ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(70): STRING(REGEX REPLACE \" CMAKE_HOST_SYSTEM_PROCESSOR ${CMAKE_HOST_SYSTEM_PROCESSOR} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(71): STRING(REGEX REPLACE / _ CMAKE_HOST_SYSTEM_PROCESSOR ${CMAKE_HOST_SYSTEM_PROCESSOR} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(84): IF(CMAKE_TOOLCHAIN_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(104): IF(CMAKE_SYSTEM_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(109): ELSE(CMAKE_SYSTEM_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(110): SET(CMAKE_SYSTEM_NAME ${CMAKE_HOST_SYSTEM_NAME} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(111): SET(CMAKE_SYSTEM_VERSION ${CMAKE_HOST_SYSTEM_VERSION} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(112): SET(CMAKE_SYSTEM_PROCESSOR ${CMAKE_HOST_SYSTEM_PROCESSOR} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(113): SET(CMAKE_CROSSCOMPILING FALSE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(114): SET(PRESET_CMAKE_SYSTEM_NAME FALSE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(118): MACRO(ADJUST_CMAKE_SYSTEM_VARIABLES _PREFIX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(147): ADJUST_CMAKE_SYSTEM_VARIABLES(CMAKE_SYSTEM ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(119): IF(NOT CMAKE_SYSTEM_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(124): IF(CMAKE_SYSTEM_NAME MATCHES BSD.OS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(129): IF(CMAKE_SYSTEM_NAME MATCHES kFreeBSD ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(134): IF(CMAKE_SYSTEM_NAME MATCHES CYGWIN ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(135): SET(CMAKE_SYSTEM_NAME CYGWIN ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(139): SET(CMAKE_SYSTEM ${CMAKE_SYSTEM_NAME} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(141): IF(CMAKE_SYSTEM_VERSION ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(142): SET(CMAKE_SYSTEM ${CMAKE_SYSTEM}-${CMAKE_SYSTEM_VERSION} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(148): ADJUST_CMAKE_SYSTEM_VARIABLES(CMAKE_HOST_SYSTEM ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(119): IF(NOT CMAKE_HOST_SYSTEM_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(124): IF(CMAKE_HOST_SYSTEM_NAME MATCHES BSD.OS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(129): IF(CMAKE_HOST_SYSTEM_NAME MATCHES kFreeBSD ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(134): IF(CMAKE_HOST_SYSTEM_NAME MATCHES CYGWIN ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(135): SET(CMAKE_HOST_SYSTEM_NAME CYGWIN ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(139): SET(CMAKE_HOST_SYSTEM ${CMAKE_HOST_SYSTEM_NAME} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(141): IF(CMAKE_HOST_SYSTEM_VERSION ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(142): SET(CMAKE_HOST_SYSTEM ${CMAKE_HOST_SYSTEM}-${CMAKE_HOST_SYSTEM_VERSION} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(152): IF(CMAKE_BINARY_DIR ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(154): IF(PRESET_CMAKE_SYSTEM_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(159): ELSE(PRESET_CMAKE_SYSTEM_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake(160): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log The system is: ${CMAKE_SYSTEM_NAME} - ${CMAKE_SYSTEM_VERSION} - ${CMAKE_SYSTEM_PROCESSOR}\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineSystem.cmake [1] 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Called from: [2] /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake(4): SET(CMAKE_SYSTEM_NAME CYGWIN ) Called from: [2] /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake(5): SET(CMAKE_SYSTEM_VERSION 1.7.22(0.268/5/3) ) Called from: [2] /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake(6): SET(CMAKE_SYSTEM_PROCESSOR i686 ) Called from: [2] /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake(8): SET(CMAKE_HOST_SYSTEM CYGWIN-1.7.22(0.268/5/3) ) Called from: [2] /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake(9): SET(CMAKE_HOST_SYSTEM_NAME CYGWIN ) Called from: [2] /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake(10): SET(CMAKE_HOST_SYSTEM_VERSION 1.7.22(0.268/5/3) ) Called from: [2] /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeSystem.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt 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/usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(71): ELSE(NOT CMAKE_C_COMPILER ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(78): LIST(LENGTH CMAKE_C_COMPILER _CMAKE_C_COMPILER_LIST_LENGTH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(79): IF(${_CMAKE_C_COMPILER_LIST_LENGTH} EQUAL 2 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(89): GET_FILENAME_COMPONENT(_CMAKE_USER_C_COMPILER_PATH ${CMAKE_C_COMPILER} PATH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(90): IF(NOT _CMAKE_USER_C_COMPILER_PATH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(91): FIND_PROGRAM(CMAKE_C_COMPILER_WITH_PATH NAMES ${CMAKE_C_COMPILER} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(92): MARK_AS_ADVANCED(CMAKE_C_COMPILER_WITH_PATH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(93): IF(CMAKE_C_COMPILER_WITH_PATH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(94): SET(CMAKE_C_COMPILER ${CMAKE_C_COMPILER_WITH_PATH} CACHE STRING C compiler FORCE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(98): MARK_AS_ADVANCED(CMAKE_C_COMPILER ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(100): IF(NOT _CMAKE_TOOLCHAIN_LOCATION ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(101): GET_FILENAME_COMPONENT(_CMAKE_TOOLCHAIN_LOCATION ${CMAKE_C_COMPILER} PATH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(105): IF(${CMAKE_GENERATOR} MATCHES Visual Studio ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(111): IF(NOT CMAKE_C_COMPILER_ID_RUN ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(112): SET(CMAKE_C_COMPILER_ID_RUN 1 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(117): SET(CMAKE_C_COMPILER_ID_TEST_FLAGS -c -Aa ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(126): SET(CMAKE_C_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(127): FILE(READ ${CMAKE_ROOT}/Modules/CMakePlatformId.h.in CMAKE_C_COMPILER_ID_PLATFORM_CONTENT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(129): INCLUDE(${CMAKE_ROOT}/Modules/CMakeDetermineCompilerId.cmake ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(19): FUNCTION(CMAKE_DETERMINE_COMPILER_ID lang flagvar src ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(78): FUNCTION(CMAKE_DETERMINE_COMPILER_ID_WRITE lang src ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(87): FUNCTION(CMAKE_DETERMINE_COMPILER_ID_BUILD lang testflags src ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(181): FUNCTION(CMAKE_DETERMINE_COMPILER_ID_CHECK lang file ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(279): FUNCTION(CMAKE_DETERMINE_COMPILER_ID_VENDOR lang ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(130): CMAKE_DETERMINE_COMPILER_ID(C CFLAGS CMakeCCompilerId.c ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(21): STRING(STRIP ${CMAKE_${lang}_COMPILER_ARG1} CMAKE_${lang}_COMPILER_ID_ARG1 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(22): STRING(REGEX REPLACE + ; CMAKE_${lang}_COMPILER_ID_ARG1 ${CMAKE_${lang}_COMPILER_ID_ARG1} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(25): IF(CMAKE_${lang}_FLAGS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(26): SET(CMAKE_${lang}_COMPILER_ID_FLAGS ${CMAKE_${lang}_FLAGS} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(30): STRING(REGEX REPLACE ; CMAKE_${lang}_COMPILER_ID_FLAGS_LIST ${CMAKE_${lang}_COMPILER_ID_FLAGS} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(33): SET(CMAKE_${lang}_COMPILER_ID_DIR ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CompilerId${lang} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(37): FOREACH(flags ${CMAKE_${lang}_COMPILER_ID_TEST_FLAGS} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(38): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(39): CMAKE_DETERMINE_COMPILER_ID_BUILD(${lang} ${flags} ${src} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(89): FILE(REMOVE_RECURSE ${CMAKE_${lang}_COMPILER_ID_DIR} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(90): FILE(MAKE_DIRECTORY ${CMAKE_${lang}_COMPILER_ID_DIR} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(91): CMAKE_DETERMINE_COMPILER_ID_WRITE(${lang} ${src} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(79): FILE(READ ${CMAKE_ROOT}/Modules/${src}.in ID_CONTENT_IN ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(80): STRING(CONFIGURE ${ID_CONTENT_IN} ID_CONTENT_OUT @ONLY ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(81): FILE(WRITE ${CMAKE_${lang}_COMPILER_ID_DIR}/${src} ${ID_CONTENT_OUT} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(94): SET(COMPILER_DESCRIPTION Compiler: ${CMAKE_${lang}_COMPILER} ${CMAKE_${lang}_COMPILER_ID_ARG1} Build flags: ${CMAKE_${lang}_COMPILER_ID_FLAGS_LIST} Id flags: ${testflags} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(101): IF(COMMAND EXECUTE_PROCESS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(102): EXECUTE_PROCESS(COMMAND ${CMAKE_${lang}_COMPILER} ${CMAKE_${lang}_COMPILER_ID_ARG1} ${CMAKE_${lang}_COMPILER_ID_FLAGS_LIST} ${testflags} ${src} WORKING_DIRECTORY ${CMAKE_${lang}_COMPILER_ID_DIR} OUTPUT_VARIABLE CMAKE_${lang}_COMPILER_ID_OUTPUT ERROR_VARIABLE CMAKE_${lang}_COMPILER_ID_OUTPUT RESULT_VARIABLE CMAKE_${lang}_COMPILER_ID_RESULT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(126): IF(CMAKE_${lang}_COMPILER_ID_RESULT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(143): ELSE(CMAKE_${lang}_COMPILER_ID_RESULT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(145): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log Compiling the ${lang} compiler identification source file \"${src}\" succeeded. ${COMPILER_DESCRIPTION} The output was: ${CMAKE_${lang}_COMPILER_ID_RESULT} ${CMAKE_${lang}_COMPILER_ID_OUTPUT} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(156): FILE(GLOB COMPILER_${lang}_PRODUCED_FILES RELATIVE ${CMAKE_${lang}_COMPILER_ID_DIR} ${CMAKE_${lang}_COMPILER_ID_DIR}/* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(159): LIST(REMOVE_ITEM COMPILER_${lang}_PRODUCED_FILES ${src} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(160): FOREACH(file ${COMPILER_${lang}_PRODUCED_FILES} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(161): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log Compilation of the ${lang} compiler identification source \" ${src}\" produced \"${file}\"\n\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(161): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log Compilation of the ${lang} compiler identification source \" ${src}\" produced \"${file}\"\n\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(161): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log Compilation of the ${lang} compiler identification source \" ${src}\" produced \"${file}\"\n\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(161): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log Compilation of the ${lang} compiler identification source \" ${src}\" produced \"${file}\"\n\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(166): IF(NOT COMPILER_${lang}_PRODUCED_FILES ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(176): SET(COMPILER_${lang}_PRODUCED_FILES ${COMPILER_${lang}_PRODUCED_FILES} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(40): FOREACH(file ${COMPILER_${lang}_PRODUCED_FILES} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(41): CMAKE_DETERMINE_COMPILER_ID_CHECK(${lang} ${CMAKE_${lang}_COMPILER_ID_DIR}/${file} ${src} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(183): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(185): SET(COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(186): SET(COMPILER_VERSION ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(187): SET(PLATFORM_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(188): FILE(STRINGS ${file} CMAKE_${lang}_COMPILER_ID_STRINGS LIMIT_COUNT 4 REGEX INFO: ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(190): SET(HAVE_COMPILER_TWICE 0 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(191): FOREACH(info ${CMAKE_${lang}_COMPILER_ID_STRINGS} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(192): IF(${info} MATCHES .*INFO:compiler\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(199): IF(${info} MATCHES .*INFO:platform\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(203): IF(${info} MATCHES .*INFO:arch\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(207): IF(${info} MATCHES .*INFO:compiler_version\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(208): STRING(REGEX REPLACE .*INFO:compiler_version\\[([^]]*)\\].* \\1 COMPILER_VERSION ${info} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(209): STRING(REGEX REPLACE ^0+([0-9]) \\1 COMPILER_VERSION ${COMPILER_VERSION} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(210): STRING(REGEX REPLACE \\.0+([0-9]) .\\1 COMPILER_VERSION ${COMPILER_VERSION} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(192): IF(${info} MATCHES .*INFO:compiler\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(193): IF(COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(196): STRING(REGEX REPLACE .*INFO:compiler\\[([^]]*)\\].* \\1 COMPILER_ID ${info} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(199): IF(${info} MATCHES .*INFO:platform\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(203): IF(${info} MATCHES .*INFO:arch\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(207): IF(${info} MATCHES .*INFO:compiler_version\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(192): IF(${info} MATCHES .*INFO:compiler\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(199): IF(${info} MATCHES .*INFO:platform\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(200): STRING(REGEX REPLACE .*INFO:platform\\[([^]]*)\\].* \\1 PLATFORM_ID ${info} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(203): IF(${info} MATCHES .*INFO:arch\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(207): IF(${info} MATCHES .*INFO:compiler_version\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(192): IF(${info} MATCHES .*INFO:compiler\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(199): IF(${info} MATCHES .*INFO:platform\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(203): IF(${info} MATCHES .*INFO:arch\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(204): STRING(REGEX REPLACE .*INFO:arch\\[([^]]*)\\].* \\1 ARCHITECTURE_ID ${info} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(207): IF(${info} MATCHES .*INFO:compiler_version\\[([^]\"]*)\\].* ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(215): IF(COMPILER_ID AND NOT COMPILER_ID_TWICE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(216): SET(CMAKE_${lang}_COMPILER_ID ${COMPILER_ID} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(217): SET(CMAKE_${lang}_PLATFORM_ID ${PLATFORM_ID} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(218): SET(MSVC_${lang}_ARCHITECTURE_ID ${ARCHITECTURE_ID} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(219): SET(CMAKE_${lang}_COMPILER_VERSION ${COMPILER_VERSION} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(223): IF(CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(225): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log The ${lang} compiler identification is ${CMAKE_${lang}_COMPILER_ID}, found in \" ${file}\"\n\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(237): IF(NOT CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(238): FILE(READ ${file} CMAKE_EXECUTABLE_MAGIC LIMIT 4 HEX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(241): IF(${CMAKE_EXECUTABLE_MAGIC} STREQUAL 7f454c46 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(259): IF(NOT DEFINED CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(260): SET(CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(263): SET(CMAKE_${lang}_COMPILER_ID ${CMAKE_${lang}_COMPILER_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(264): SET(CMAKE_${lang}_PLATFORM_ID ${CMAKE_${lang}_PLATFORM_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(265): SET(MSVC_${lang}_ARCHITECTURE_ID ${MSVC_${lang}_ARCHITECTURE_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(267): SET(CMAKE_${lang}_COMPILER_VERSION ${CMAKE_${lang}_COMPILER_VERSION} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(268): SET(CMAKE_EXECUTABLE_FORMAT ${CMAKE_EXECUTABLE_FORMAT} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(41): CMAKE_DETERMINE_COMPILER_ID_CHECK(${lang} ${CMAKE_${lang}_COMPILER_ID_DIR}/${file} ${src} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(183): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(237): IF(NOT CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(238): FILE(READ ${file} CMAKE_EXECUTABLE_MAGIC LIMIT 4 HEX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(241): IF(${CMAKE_EXECUTABLE_MAGIC} STREQUAL 7f454c46 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(259): IF(NOT DEFINED CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(260): SET(CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(263): SET(CMAKE_${lang}_COMPILER_ID ${CMAKE_${lang}_COMPILER_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(264): SET(CMAKE_${lang}_PLATFORM_ID ${CMAKE_${lang}_PLATFORM_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(265): SET(MSVC_${lang}_ARCHITECTURE_ID ${MSVC_${lang}_ARCHITECTURE_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(267): SET(CMAKE_${lang}_COMPILER_VERSION ${CMAKE_${lang}_COMPILER_VERSION} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(268): SET(CMAKE_EXECUTABLE_FORMAT ${CMAKE_EXECUTABLE_FORMAT} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(41): CMAKE_DETERMINE_COMPILER_ID_CHECK(${lang} ${CMAKE_${lang}_COMPILER_ID_DIR}/${file} ${src} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(183): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(237): IF(NOT CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(238): FILE(READ ${file} CMAKE_EXECUTABLE_MAGIC LIMIT 4 HEX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(241): IF(${CMAKE_EXECUTABLE_MAGIC} STREQUAL 7f454c46 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(259): IF(NOT DEFINED CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(260): SET(CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(263): SET(CMAKE_${lang}_COMPILER_ID ${CMAKE_${lang}_COMPILER_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(264): SET(CMAKE_${lang}_PLATFORM_ID ${CMAKE_${lang}_PLATFORM_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(265): SET(MSVC_${lang}_ARCHITECTURE_ID ${MSVC_${lang}_ARCHITECTURE_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(267): SET(CMAKE_${lang}_COMPILER_VERSION ${CMAKE_${lang}_COMPILER_VERSION} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(268): SET(CMAKE_EXECUTABLE_FORMAT ${CMAKE_EXECUTABLE_FORMAT} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(41): CMAKE_DETERMINE_COMPILER_ID_CHECK(${lang} ${CMAKE_${lang}_COMPILER_ID_DIR}/${file} ${src} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(183): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(237): IF(NOT CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(238): FILE(READ ${file} CMAKE_EXECUTABLE_MAGIC LIMIT 4 HEX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(241): IF(${CMAKE_EXECUTABLE_MAGIC} STREQUAL 7f454c46 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(259): IF(NOT DEFINED CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(260): SET(CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(263): SET(CMAKE_${lang}_COMPILER_ID ${CMAKE_${lang}_COMPILER_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(264): SET(CMAKE_${lang}_PLATFORM_ID ${CMAKE_${lang}_PLATFORM_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(265): SET(MSVC_${lang}_ARCHITECTURE_ID ${MSVC_${lang}_ARCHITECTURE_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(267): SET(CMAKE_${lang}_COMPILER_VERSION ${CMAKE_${lang}_COMPILER_VERSION} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(268): SET(CMAKE_EXECUTABLE_FORMAT ${CMAKE_EXECUTABLE_FORMAT} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(38): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(38): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(47): IF(NOT CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(52): IF(NOT CMAKE_EXECUTABLE_FORMAT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(53): SET(CMAKE_EXECUTABLE_FORMAT Unknown CACHE INTERNAL Executable file format ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(57): IF(CMAKE_${lang}_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(58): IF(CMAKE_${lang}_COMPILER_VERSION ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(59): SET(_version ${CMAKE_${lang}_COMPILER_VERSION} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(63): MESSAGE(STATUS The ${lang} compiler identification is ${CMAKE_${lang}_COMPILER_ID}${_version} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(69): SET(CMAKE_${lang}_COMPILER_ID ${CMAKE_${lang}_COMPILER_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(70): SET(CMAKE_${lang}_PLATFORM_ID ${CMAKE_${lang}_PLATFORM_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(71): SET(MSVC_${lang}_ARCHITECTURE_ID ${MSVC_${lang}_ARCHITECTURE_ID} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCompilerId.cmake(73): SET(CMAKE_${lang}_COMPILER_VERSION ${CMAKE_${lang}_COMPILER_VERSION} PARENT_SCOPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(133): IF(${CMAKE_C_COMPILER_ID} MATCHES GNU ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(136): IF(${CMAKE_C_PLATFORM_ID} MATCHES MinGW ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(138): ELSEIF(${CMAKE_C_PLATFORM_ID} MATCHES Cygwin ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(150): IF(CMAKE_CROSSCOMPILING AND ${CMAKE_C_COMPILER_ID} MATCHES GNU AND NOT _CMAKE_TOOLCHAIN_PREFIX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(168): INCLUDE(${CMAKE_ROOT}/Modules/CMakeClDeps.cmake ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeClDeps.cmake(23): IF(MSVC_C_ARCHITECTURE_ID AND CMAKE_GENERATOR MATCHES Ninja AND CMAKE_C_COMPILER AND CMAKE_COMMAND ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeClDeps.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake(169): INCLUDE(CMakeFindBinUtils ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeFindBinUtils.cmake(33): IF(${CMAKE_CXX_COMPILER_ID} MATCHES MSVC OR ${CMAKE_C_COMPILER_ID} MATCHES MSVC OR ${CMAKE_GENERATOR} MATCHES Visual Studio ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeFindBinUtils.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeFindBinUtils.cmake(37): FIND_PROGRAM(CMAKE_LINKER NAMES link HINTS ${_CMAKE_TOOLCHAIN_LOCATION} ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeFindBinUtils.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeDetermineCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeFindBinUtils.cmake(39): 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With Visual Studio IDE projects all commands are done without /nologo. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(47): IF(CMAKE_GENERATOR MATCHES Makefiles ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(48): SET(CMAKE_COLOR_MAKEFILE ON CACHE BOOL Enable/Disable color output during build. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(51): MARK_AS_ADVANCED(CMAKE_COLOR_MAKEFILE ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(52): IF(DEFINED CMAKE_RULE_MESSAGES ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(55): IF(CMAKE_GENERATOR MATCHES Unix Makefiles ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(56): SET(CMAKE_EXPORT_COMPILE_COMMANDS OFF CACHE BOOL Enable/Disable output of compile commands during generation. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(59): MARK_AS_ADVANCED(CMAKE_EXPORT_COMPILE_COMMANDS ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(63): IF(CMAKE_GENERATOR MATCHES Ninja ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(77): function(GetDefaultWindowsPrefixBase var ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(163): IF(NOT DEFINED CMAKE_INSTALL_PREFIX ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(164): SET(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(168): IF(CMAKE_HOST_UNIX ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(169): SET(CMAKE_INSTALL_PREFIX /usr/local CACHE PATH Install path prefix, prepended onto install directories. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(181): SET(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Unspecified ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake(183): MARK_AS_ADVANCED(CMAKE_SKIP_RPATH CMAKE_SKIP_INSTALL_RPATH CMAKE_VERBOSE_MAKEFILE ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeGenericSystem.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake(34): SET(CMAKE_SYSTEM_INFO_FILE Platform/${CMAKE_SYSTEM_NAME} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake(36): INCLUDE(${CMAKE_SYSTEM_INFO_FILE} OPTIONAL RESULT_VARIABLE _INCLUDED_SYSTEM_INFO_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(1): if(${CMAKE_MINIMUM_REQUIRED_VERSION} VERSION_LESS 2.8.3.20101214 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(2): set(__USE_CMAKE_LEGACY_CYGWIN_WIN32 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(4): if(NOT DEFINED WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(5): set(WIN32 0 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(6): if(DEFINED __USE_CMAKE_LEGACY_CYGWIN_WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(7): if(NOT DEFINED CMAKE_LEGACY_CYGWIN_WIN32 AND DEFINED ENV{CMAKE_LEGACY_CYGWIN_WIN32} ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(11): if(CMAKE_LEGACY_CYGWIN_WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(14): elseif(x${CMAKE_LEGACY_CYGWIN_WIN32} STREQUAL x ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(15): message(WARNING CMake no longer defines WIN32 on Cygwin! \n (1) If you are just trying to build this project, ignore this warning or quiet it by setting CMAKE_LEGACY_CYGWIN_WIN32=0 in your environment or in the CMake cache. If later configuration or build errors occur then this project may have been written under the assumption that Cygwin is WIN32. In that case, set CMAKE_LEGACY_CYGWIN_WIN32=1 instead. \n (2) If you are developing this project, add the line\n set(CMAKE_LEGACY_CYGWIN_WIN32 0) # Remove when CMake >= 2.8.4 is required\n at the top of your top-level CMakeLists.txt file or set the minimum required version of CMake to 2.8.4 or higher. Then teach your project to build on Cygwin without WIN32. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt CMake Warning at /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake:15 (message): CMake no longer defines WIN32 on Cygwin! (1) If you are just trying to build this project, ignore this warning or quiet it by setting CMAKE_LEGACY_CYGWIN_WIN32=0 in your environment or in the CMake cache. If later configuration or build errors occur then this project may have been written under the assumption that Cygwin is WIN32. In that case, set CMAKE_LEGACY_CYGWIN_WIN32=1 instead. (2) If you are developing this project, add the line set(CMAKE_LEGACY_CYGWIN_WIN32 0) # Remove when CMake >= 2.8.4 is required at the top of your top-level CMakeLists.txt file or set the minimum required version of CMake to 2.8.4 or higher. Then teach your project to build on Cygwin without WIN32. Call Stack (most recent call first): /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake:36 (INCLUDE) CMakeLists.txt:2 (project) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(36): if(DEFINED __USE_CMAKE_LEGACY_CYGWIN_WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(38): if(WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(40): else() Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(41): set(ENV{CMAKE_LEGACY_CYGWIN_WIN32} 0 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(43): unset(__USE_CMAKE_LEGACY_CYGWIN_WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(46): SET(CYGWIN 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(48): SET(CMAKE_SHARED_LIBRARY_PREFIX cyg ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(49): SET(CMAKE_SHARED_LIBRARY_SUFFIX .dll ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(50): SET(CMAKE_SHARED_MODULE_PREFIX cyg ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(51): SET(CMAKE_SHARED_MODULE_SUFFIX .dll ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(52): SET(CMAKE_IMPORT_LIBRARY_PREFIX lib ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(53): SET(CMAKE_IMPORT_LIBRARY_SUFFIX .dll.a ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(54): SET(CMAKE_EXECUTABLE_SUFFIX .exe ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(56): SET(CMAKE_MODULE_EXISTS 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(58): SET(CMAKE_FIND_LIBRARY_PREFIXES lib ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(59): SET(CMAKE_FIND_LIBRARY_SUFFIXES .dll.a .a ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(62): SET(CMAKE_SHARED_LIBRARY_NAME_WITH_VERSION 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(64): INCLUDE(Platform/UnixPaths ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(20): IF(__UNIX_PATHS_INCLUDED ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(23): SET(__UNIX_PATHS_INCLUDED 1 ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(25): SET(UNIX 1 ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(29): GET_FILENAME_COMPONENT(_CMAKE_INSTALL_DIR ${CMAKE_ROOT} PATH ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(30): GET_FILENAME_COMPONENT(_CMAKE_INSTALL_DIR ${_CMAKE_INSTALL_DIR} PATH ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(34): LIST(APPEND CMAKE_SYSTEM_PREFIX_PATH /usr/local /usr / ${_CMAKE_INSTALL_DIR} ${CMAKE_INSTALL_PREFIX} ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(46): LIST(APPEND CMAKE_SYSTEM_INCLUDE_PATH /usr/include/w32api /usr/X11R6/include /usr/include/X11 /usr/pkg/include /opt/csw/include /opt/include /usr/openwin/include ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(59): LIST(APPEND CMAKE_SYSTEM_LIBRARY_PATH /usr/lib/w32api /usr/X11R6/lib /usr/lib/X11 /usr/pkg/lib /opt/csw/lib /opt/lib /usr/openwin/lib ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(72): LIST(APPEND CMAKE_SYSTEM_PROGRAM_PATH /usr/pkg/bin ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(76): LIST(APPEND CMAKE_PLATFORM_IMPLICIT_LINK_DIRECTORIES /lib /usr/lib /usr/lib32 /usr/lib64 ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(80): LIST(APPEND CMAKE_C_IMPLICIT_INCLUDE_DIRECTORIES /usr/include ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(83): LIST(APPEND CMAKE_CXX_IMPLICIT_INCLUDE_DIRECTORIES /usr/include ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(88): SET_PROPERTY(GLOBAL PROPERTY FIND_LIBRARY_USE_LIB64_PATHS TRUE ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake(38): IF(NOT _INCLUDED_SYSTEM_INFO_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake(53): IF(CMAKE_EXTRA_GENERATOR ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake(63): IF(NOT CMAKE_MODULE_EXISTS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake(69): SET(CMAKE_SYSTEM_SPECIFIC_INFORMATION_LOADED 1 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeSystemSpecificInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(23): IF(UNIX ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(24): SET(CMAKE_C_OUTPUT_EXTENSION .o ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(29): SET(_INCLUDED_FILE 0 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(32): IF(CMAKE_C_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(33): INCLUDE(Compiler/${CMAKE_C_COMPILER_ID}-C OPTIONAL ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(36): SET(CMAKE_BASE_NAME ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(37): GET_FILENAME_COMPONENT(CMAKE_BASE_NAME ${CMAKE_C_COMPILER} NAME_WE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(38): IF(CMAKE_COMPILER_IS_GNUCC ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(44): IF(CMAKE_SYSTEM_PROCESSOR ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(45): IF(CMAKE_C_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(46): INCLUDE(Platform/${CMAKE_SYSTEM_NAME}-${CMAKE_C_COMPILER_ID}-C-${CMAKE_SYSTEM_PROCESSOR} OPTIONAL RESULT_VARIABLE _INCLUDED_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(48): IF(NOT _INCLUDED_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(49): INCLUDE(Platform/${CMAKE_SYSTEM_NAME}-${CMAKE_BASE_NAME}-${CMAKE_SYSTEM_PROCESSOR} OPTIONAL ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(55): IF(CMAKE_C_COMPILER_ID ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(56): INCLUDE(Platform/${CMAKE_SYSTEM_NAME}-${CMAKE_C_COMPILER_ID}-C OPTIONAL RESULT_VARIABLE _INCLUDED_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(59): IF(NOT _INCLUDED_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(60): INCLUDE(Platform/${CMAKE_SYSTEM_NAME}-${CMAKE_BASE_NAME} OPTIONAL RESULT_VARIABLE _INCLUDED_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(67): IF(NOT _INCLUDED_FILE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(68): INCLUDE(Platform/${CMAKE_SYSTEM_NAME} OPTIONAL ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(1): if(${CMAKE_MINIMUM_REQUIRED_VERSION} VERSION_LESS 2.8.3.20101214 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(2): set(__USE_CMAKE_LEGACY_CYGWIN_WIN32 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(4): if(NOT DEFINED WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(36): if(DEFINED __USE_CMAKE_LEGACY_CYGWIN_WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(38): if(WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(40): else() Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(41): set(ENV{CMAKE_LEGACY_CYGWIN_WIN32} 0 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(43): unset(__USE_CMAKE_LEGACY_CYGWIN_WIN32 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(46): SET(CYGWIN 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(48): SET(CMAKE_SHARED_LIBRARY_PREFIX cyg ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(49): SET(CMAKE_SHARED_LIBRARY_SUFFIX .dll ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(50): SET(CMAKE_SHARED_MODULE_PREFIX cyg ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(51): SET(CMAKE_SHARED_MODULE_SUFFIX .dll ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(52): SET(CMAKE_IMPORT_LIBRARY_PREFIX lib ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(53): SET(CMAKE_IMPORT_LIBRARY_SUFFIX .dll.a ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(54): SET(CMAKE_EXECUTABLE_SUFFIX .exe ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(56): SET(CMAKE_MODULE_EXISTS 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(58): SET(CMAKE_FIND_LIBRARY_PREFIXES lib ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(59): SET(CMAKE_FIND_LIBRARY_SUFFIXES .dll.a .a ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(62): SET(CMAKE_SHARED_LIBRARY_NAME_WITH_VERSION 1 ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake(64): INCLUDE(Platform/UnixPaths ) Called from: [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(20): IF(__UNIX_PATHS_INCLUDED ) Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake(21): RETURN() Called from: [4] /usr/share/cmake-2.8.9/Modules/Platform/UnixPaths.cmake [3] /usr/share/cmake-2.8.9/Modules/Platform/CYGWIN.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(71): IF(CMAKE_C_SIZEOF_DATA_PTR ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(84): IF(CMAKE_USER_MAKE_RULES_OVERRIDE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(90): IF(CMAKE_USER_MAKE_RULES_OVERRIDE_C ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(100): IF(NOT CMAKE_MODULE_EXISTS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(105): SET(CMAKE_C_FLAGS_INIT $ENV{CFLAGS} ${CMAKE_C_FLAGS_INIT} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(107): IF(CMAKE_C_FLAGS_INIT STREQUAL ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(108): SET(CMAKE_C_FLAGS_INIT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(110): SET(CMAKE_C_FLAGS ${CMAKE_C_FLAGS_INIT} CACHE STRING Flags used by the compiler during all build types. ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(113): IF(NOT CMAKE_NOT_USING_CONFIG_FLAGS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(115): IF(NOT CMAKE_NO_BUILD_TYPE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(116): SET(CMAKE_BUILD_TYPE ${CMAKE_BUILD_TYPE_INIT} CACHE STRING Choose the type of build, options are: None(CMAKE_CXX_FLAGS or CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel. ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(119): SET(CMAKE_C_FLAGS_DEBUG ${CMAKE_C_FLAGS_DEBUG_INIT} CACHE STRING Flags used by the compiler during debug builds. ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(121): SET(CMAKE_C_FLAGS_MINSIZEREL ${CMAKE_C_FLAGS_MINSIZEREL_INIT} CACHE STRING Flags used by the compiler during release minsize builds. ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(123): SET(CMAKE_C_FLAGS_RELEASE ${CMAKE_C_FLAGS_RELEASE_INIT} CACHE STRING Flags used by the compiler during release builds (/MD /Ob1 /Oi /Ot /Oy /Gs will produce slightly less optimized but smaller files). ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(125): SET(CMAKE_C_FLAGS_RELWITHDEBINFO ${CMAKE_C_FLAGS_RELWITHDEBINFO_INIT} CACHE STRING Flags used by the compiler during Release with Debug Info builds. ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(129): IF(CMAKE_C_STANDARD_LIBRARIES_INIT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(135): INCLUDE(CMakeCommonLanguageInclude ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(19): SET(CMAKE_EXE_LINKER_FLAGS ${CMAKE_EXE_LINKER_FLAGS_INIT} $ENV{LDFLAGS} CACHE STRING Flags used by the linker. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(23): IF(NOT CMAKE_NOT_USING_CONFIG_FLAGS ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(25): IF(NOT CMAKE_NO_BUILD_TYPE ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(26): SET(CMAKE_BUILD_TYPE ${CMAKE_BUILD_TYPE_INIT} CACHE STRING Choose the type of build, options are: None(CMAKE_CXX_FLAGS or CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(30): SET(CMAKE_EXE_LINKER_FLAGS_DEBUG ${CMAKE_EXE_LINKER_FLAGS_DEBUG_INIT} CACHE STRING Flags used by the linker during debug builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(33): SET(CMAKE_EXE_LINKER_FLAGS_MINSIZEREL ${CMAKE_EXE_LINKER_FLAGS_MINSIZEREL_INIT} CACHE STRING Flags used by the linker during release minsize builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(36): SET(CMAKE_EXE_LINKER_FLAGS_RELEASE ${CMAKE_EXE_LINKER_FLAGS_RELEASE_INIT} CACHE STRING Flags used by the linker during release builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(39): SET(CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO ${CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO_INIT} CACHE STRING Flags used by the linker during Release with Debug Info builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(43): SET(CMAKE_SHARED_LINKER_FLAGS_DEBUG ${CMAKE_SHARED_LINKER_FLAGS_DEBUG_INIT} CACHE STRING Flags used by the linker during debug builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(46): SET(CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL ${CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL_INIT} CACHE STRING Flags used by the linker during release minsize builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(50): SET(CMAKE_SHARED_LINKER_FLAGS_RELEASE ${CMAKE_SHARED_LINKER_FLAGS_RELEASE_INIT} CACHE STRING Flags used by the linker during release builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(53): SET(CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO ${CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO_INIT} CACHE STRING Flags used by the linker during Release with Debug Info builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(57): SET(CMAKE_MODULE_LINKER_FLAGS_DEBUG ${CMAKE_MODULE_LINKER_FLAGS_DEBUG_INIT} CACHE STRING Flags used by the linker during debug builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(60): SET(CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL ${CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL_INIT} CACHE STRING Flags used by the linker during release minsize builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(64): SET(CMAKE_MODULE_LINKER_FLAGS_RELEASE ${CMAKE_MODULE_LINKER_FLAGS_RELEASE_INIT} CACHE STRING Flags used by the linker during release builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(67): SET(CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO ${CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO_INIT} CACHE STRING Flags used by the linker during Release with Debug Info builds. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(73): SET(CMAKE_SHARED_LINKER_FLAGS ${CMAKE_SHARED_LINKER_FLAGS_INIT} $ENV{LDFLAGS} CACHE STRING Flags used by the linker during the creation of dll's. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(77): SET(CMAKE_MODULE_LINKER_FLAGS ${CMAKE_MODULE_LINKER_FLAGS_INIT} $ENV{LDFLAGS} CACHE STRING Flags used by the linker during the creation of modules. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(80): SET(CMAKE_BUILD_TOOL ${CMAKE_MAKE_PROGRAM} CACHE INTERNAL What is the target build tool cmake is generating for. ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake(84): MARK_AS_ADVANCED(CMAKE_BUILD_TOOL CMAKE_VERBOSE_MAKEFILE CMAKE_EXE_LINKER_FLAGS CMAKE_EXE_LINKER_FLAGS_DEBUG CMAKE_EXE_LINKER_FLAGS_MINSIZEREL CMAKE_EXE_LINKER_FLAGS_RELEASE CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO CMAKE_SHARED_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS_DEBUG CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL CMAKE_SHARED_LINKER_FLAGS_RELEASE CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO CMAKE_MODULE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL CMAKE_MODULE_LINKER_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeCommonLanguageInclude.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(165): IF(NOT CMAKE_C_CREATE_SHARED_LIBRARY ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(166): SET(CMAKE_C_CREATE_SHARED_LIBRARY -o ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(171): IF(NOT CMAKE_C_CREATE_SHARED_MODULE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(172): SET(CMAKE_C_CREATE_SHARED_MODULE ${CMAKE_C_CREATE_SHARED_LIBRARY} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(177): IF(NOT DEFINED CMAKE_C_ARCHIVE_CREATE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(178): SET(CMAKE_C_ARCHIVE_CREATE cr ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(180): IF(NOT DEFINED CMAKE_C_ARCHIVE_APPEND ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(181): SET(CMAKE_C_ARCHIVE_APPEND r ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(183): IF(NOT DEFINED CMAKE_C_ARCHIVE_FINISH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(184): SET(CMAKE_C_ARCHIVE_FINISH ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(188): IF(NOT CMAKE_C_COMPILE_OBJECT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(189): SET(CMAKE_C_COMPILE_OBJECT -o -c ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(193): IF(NOT CMAKE_C_LINK_EXECUTABLE ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(194): SET(CMAKE_C_LINK_EXECUTABLE -o ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(198): IF(NOT CMAKE_EXECUTABLE_RUNTIME_C_FLAG ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(199): SET(CMAKE_EXECUTABLE_RUNTIME_C_FLAG ${CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(202): IF(NOT CMAKE_EXECUTABLE_RUNTIME_C_FLAG_SEP ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(203): SET(CMAKE_EXECUTABLE_RUNTIME_C_FLAG_SEP ${CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG_SEP} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(206): IF(NOT CMAKE_EXECUTABLE_RPATH_LINK_C_FLAG ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(207): SET(CMAKE_EXECUTABLE_RPATH_LINK_C_FLAG ${CMAKE_SHARED_LIBRARY_RPATH_LINK_C_FLAG} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(210): MARK_AS_ADVANCED(CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELEASE CMAKE_C_FLAGS_RELWITHDEBINFO ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake(217): SET(CMAKE_C_INFORMATION_LOADED 1 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeCInformation.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(15): INCLUDE(CMakeTestCompilerCommon ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCompilerCommon.cmake(15): function(PrintTestCompilerStatus LANG MSG ) Called from: [3] /usr/share/cmake-2.8.9/Modules/CMakeTestCompilerCommon.cmake [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(22): IF(NOT CMAKE_C_COMPILER_WORKS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(23): PrintTestCompilerStatus(C ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCompilerCommon.cmake(16): IF(CMAKE_GENERATOR MATCHES Make ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCompilerCommon.cmake(17): MESSAGE(STATUS Check for working ${LANG} compiler: ${CMAKE_${LANG}_COMPILER}${MSG} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(24): FILE(WRITE ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testCCompiler.c #ifdef __cplusplus\n # error \"The CMAKE_C_COMPILER is set to a C++ compiler\"\n #endif\n #if defined(__CLASSIC_C__)\n int main(argc, argv)\n int argc;\n char* argv[];\n #else\n int main(int argc, char* argv[])\n #endif\n { (void)argv; return argc-1;}\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(36): TRY_COMPILE(CMAKE_C_COMPILER_WORKS ${CMAKE_BINARY_DIR} ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testCCompiler.c OUTPUT_VARIABLE __CMAKE_C_COMPILER_OUTPUT ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(39): SET(C_TEST_WAS_RUN 1 ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(42): IF(NOT CMAKE_C_COMPILER_WORKS ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(43): PrintTestCompilerStatus(C -- broken ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCompilerCommon.cmake(16): IF(CMAKE_GENERATOR MATCHES Make ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCompilerCommon.cmake(17): MESSAGE(STATUS Check for working ${LANG} compiler: ${CMAKE_${LANG}_COMPILER}${MSG} ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(44): FILE(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log Determining if the C compiler works failed with the following output:\n${__CMAKE_C_COMPILER_OUTPUT}\n\n ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(50): FILE(REMOVE ${CMAKE_PLATFORM_ROOT_BIN}/CMakeCPlatform.cmake ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(51): FILE(REMOVE ${CMAKE_PLATFORM_ROOT_BIN}/CMakeCXXPlatform.cmake ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake(52): MESSAGE(FATAL_ERROR The C compiler \"${CMAKE_C_COMPILER}\" is not able to compile a simple test program.\nIt fails with the following output:\n ${__CMAKE_C_COMPILER_OUTPUT}\n\n CMake will not be able to correctly generate this project. ) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt CMake Error at /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake:52 (MESSAGE): The C compiler "/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe" is not able to compile a simple test program. It fails with the following output: Change Dir: /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/make.exe "cmTryCompileExec2102058447/fast" /usr/bin/make -f CMakeFiles/cmTryCompileExec2102058447.dir/build.make CMakeFiles/cmTryCompileExec2102058447.dir/build make[1]: Entering directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeTmp' /usr/bin/cmake.exe -E cmake_progress_report /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec2102058447.dir/testCCompiler.c.o "/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe" -MT -wd4996 -Z7 -openmp -o CMakeFiles/cmTryCompileExec2102058447.dir/testCCompiler.c.o -c /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeTmp/testCCompiler.c Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. cl : Command line warning D9035 : option 'o' has been deprecated and will be removed in a future release cl : Command line warning D9002 : ignoring unknown option '/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeTmp/testCCompiler.c' cl : Command line error D8003 : missing source filename CMakeFiles/cmTryCompileExec2102058447.dir/build.make:60: recipe for target `CMakeFiles/cmTryCompileExec2102058447.dir/testCCompiler.c.o' failed make[1]: *** [CMakeFiles/cmTryCompileExec2102058447.dir/testCCompiler.c.o] Error 2 make[1]: Leaving directory `/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeFiles/CMakeTmp' Makefile:117: recipe for target `cmTryCompileExec2102058447/fast' failed make: *** [cmTryCompileExec2102058447/fast] Error 2 CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:2 (project) Called from: [2] /usr/share/cmake-2.8.9/Modules/CMakeTestCCompiler.cmake [1] /cygdrive/c/cygwin/packages/petsc-dev/CMakeLists.txt Contents of /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/CMakeCache.txt: # This is the CMakeCache file. # For build in directory: /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized # It was generated by CMake: /usr/bin/cmake.exe # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUI's for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //Dummy comment CMAKE_AR:FILEPATH=/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe;lib //Choose the type of build, options are: None(CMAKE_CXX_FLAGS or // CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel. CMAKE_BUILD_TYPE:STRING= //Enable/Disable color output during build. CMAKE_COLOR_MAKEFILE:BOOL=ON //Dummy comment CMAKE_CXX_COMPILER:FILEPATH=cl //Dummy comment CMAKE_CXX_FLAGS:STRING=' -MT -GR -EHsc -Z7 -Zm200 -openmp -TP ' //C compiler. CMAKE_C_COMPILER:FILEPATH=/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe //Path to a program. CMAKE_C_COMPILER_WITH_PATH:FILEPATH=/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cl.exe //Dummy comment CMAKE_C_FLAGS:STRING=' -MT -wd4996 -Z7 -openmp ' //Flags used by the compiler during debug builds. CMAKE_C_FLAGS_DEBUG:STRING= //Flags used by the compiler during release minsize builds. CMAKE_C_FLAGS_MINSIZEREL:STRING= //Flags used by the compiler during release builds (/MD /Ob1 /Oi // /Ot /Oy /Gs will produce slightly less optimized but smaller // files). CMAKE_C_FLAGS_RELEASE:STRING= //Flags used by the compiler during Release with Debug Info builds. CMAKE_C_FLAGS_RELWITHDEBINFO:STRING= //Flags used by the linker. CMAKE_EXE_LINKER_FLAGS:STRING=' ' //Flags used by the linker during debug builds. CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during release minsize builds. CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during release builds. CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during Release with Debug Info builds. CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING= //Enable/Disable output of compile commands during generation. CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=OFF //Dummy comment CMAKE_Fortran_COMPILER:FILEPATH=ifort //Dummy comment CMAKE_Fortran_FLAGS:STRING=' -MT -Z7 -fpp -openmp ' //Install path prefix, prepended onto install directories. CMAKE_INSTALL_PREFIX:PATH=/usr/local //Path to a program. CMAKE_LINKER:FILEPATH=/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/link.exe //Path to a program. CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/make.exe //Flags used by the linker during the creation of modules. CMAKE_MODULE_LINKER_FLAGS:STRING=' ' //Flags used by the linker during debug builds. CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during release minsize builds. CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during release builds. CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during Release with Debug Info builds. CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING= //Value Computed by CMake CMAKE_PROJECT_NAME:STATIC=PETSc //Dummy comment CMAKE_RANLIB:FILEPATH=/usr/bin/true //Flags used by the linker during the creation of dll's. CMAKE_SHARED_LINKER_FLAGS:STRING=' ' //Flags used by the linker during debug builds. CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during release minsize builds. CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during release builds. CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during Release with Debug Info builds. CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING= //If set, runtime paths are not added when installing shared libraries, // but are added when building. CMAKE_SKIP_INSTALL_RPATH:BOOL=NO //If set, runtime paths are not added when using shared libraries. CMAKE_SKIP_RPATH:BOOL=NO //If true, cmake will use relative paths in makefiles and projects. CMAKE_USE_RELATIVE_PATHS:BOOL=OFF //If this value is on, makefiles will be generated without the // .SILENT directive, and all commands will be echoed to the console // during the make. This is useful for debugging only. With Visual // Studio IDE projects all commands are done without /nologo. CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE //No help, variable specified on the command line. PETSC_CMAKE_ARCH:STRING=arch-mswin-c-optimized //Dummy comment PETSC_CUDA_HOST_FLAGS:STRING=,-MT,-wd4996,-Z7,-openmp //Value Computed by CMake PETSc_BINARY_DIR:STATIC=/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized //Value Computed by CMake PETSc_SOURCE_DIR:STATIC=/cygdrive/c/cygwin/packages/petsc-dev ######################## # INTERNAL cache entries ######################## //ADVANCED property for variable: CMAKE_BUILD_TOOL CMAKE_BUILD_TOOL-ADVANCED:INTERNAL=1 //What is the target build tool cmake is generating for. CMAKE_BUILD_TOOL:INTERNAL=/usr/bin/make.exe //This is the directory where this CMakeCache.txt was created CMAKE_CACHEFILE_DIR:INTERNAL=/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized //Major version of cmake used to create the current loaded cache CMAKE_CACHE_MAJOR_VERSION:INTERNAL=2 //Minor version of cmake used to create the current loaded cache CMAKE_CACHE_MINOR_VERSION:INTERNAL=8 //Patch version of cmake used to create the current loaded cache CMAKE_CACHE_PATCH_VERSION:INTERNAL=9 //ADVANCED property for variable: CMAKE_COLOR_MAKEFILE CMAKE_COLOR_MAKEFILE-ADVANCED:INTERNAL=1 //Path to CMake executable. CMAKE_COMMAND:INTERNAL=/usr/bin/cmake.exe //Path to cpack program executable. CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack.exe //Path to ctest program executable. CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest.exe //ADVANCED property for variable: CMAKE_C_COMPILER CMAKE_C_COMPILER-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_COMPILER_WITH_PATH CMAKE_C_COMPILER_WITH_PATH-ADVANCED:INTERNAL=1 //Result of TRY_COMPILE CMAKE_C_COMPILER_WORKS:INTERNAL=FALSE //ADVANCED property for variable: CMAKE_C_FLAGS CMAKE_C_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_RELWITHDEBINFO CMAKE_C_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //Path to cache edit program executable. 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CMAKE_ROOT:INTERNAL=/usr/share/cmake-2.8.9 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_DEBUG CMAKE_SHARED_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELEASE CMAKE_SHARED_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_INSTALL_RPATH CMAKE_SKIP_INSTALL_RPATH-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_RPATH CMAKE_SKIP_RPATH-ADVANCED:INTERNAL=1 //uname command CMAKE_UNAME:INTERNAL=/usr/bin/uname.exe //ADVANCED property for variable: CMAKE_USE_RELATIVE_PATHS CMAKE_USE_RELATIVE_PATHS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_VERBOSE_MAKEFILE CMAKE_VERBOSE_MAKEFILE-ADVANCED:INTERNAL=1 CMake configuration was unsuccessful Pushing language C Popping language C Pushing language FC Popping language FC ================================================================================ ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.petsc4py(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/packages/petsc4py.py:65) TESTING: alternateConfigureLibrary from PETSc.packages.petsc4py(config/PETSc/packages/petsc4py.py:65) Defined make rule "petsc4py" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpi4py(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/packages/mpi4py.py:49) TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(config/PETSc/packages/mpi4py.py:49) Defined make rule "mpi4py" with dependencies "" and code [] Defined make rule "mpi4py_noinstall" with dependencies "" and code [] **** arch-mswin-c-optimized/conf/petscvariables **** FAST_AR_FLAGS = -a AR_FLAGS = -a FC_MODULE_OUTPUT_FLAG = -module: PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -openmp -openmp -MT -Z7 -fpp -openmp LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl CC_FLAGS = -MT -wd4996 -Z7 -openmp PETSC_LIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_PRECISION = double OPENMP_LIB = FC_FLAGS = -MT -Z7 -fpp -openmp BLASLAPACK_LIB = -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -lfblas PETSC_MAT_LIB = ${PETSC_WITH_EXTERNAL_LIB} PCC = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} MPI_LIB = /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib PETSC_EXTERNAL_LIB_BASIC = -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -lfblas /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CC_SUFFIX = o OPENMP_INCLUDE = SHLIBS = libpetsc CONFIGURE_OPTIONS = --with-cc=\"win32fe cl\" --with-fc=\"win32fe ifort\" --with-cxx=\"win32fe cl\" --download-f-blas-lapack --with-threadcomm --with-openmp --useThreads=0 PETSC_CHARACTERISTIC_LIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_KSP_LIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/cygdrive/c/cygwin/packages/petsc-dev/include -I/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/include -I/cygdrive/c/Program\ Files/MPICH2/include CPP_FLAGS = PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = FC_LINKER = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort PCC_LINKER = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl PETSC_LIB_BASIC = -lpetsc PCC_LINKER_FLAGS = -openmp -openmp -MT -wd4996 -Z7 -openmp PETSC_CONTRIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/cygdrive/c/cygwin/packages/petsc-dev/include -I/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/include -I/cygdrive/c/Program\ Files/MPICH2/include PETSC_SYS_LIB = ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -MT -wd4996 -Z7 -openmp PETSC_TS_LIB = ${PETSC_WITH_EXTERNAL_LIB} BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = PETSC_DM_LIB = ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized FC_MODULE_FLAG = -I PETSC_WITH_EXTERNAL_LIB = -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lpetsc -lflapack -lfblas /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib MPI_INCLUDE = -I/cygdrive/c/Program\ Files/MPICH2/include FC_SUFFIX = o PETSC_SNES_LIB = ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SLFLAG = -L CC = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl RANLIB = /usr/bin/true CXX = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl FC = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort CXXCPP = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E FC_LINKER_SLFLAG = -L CPP = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E AR_LIB_SUFFIX = lib LD_SHARED = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib AR = /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib DIR = /cygdrive/c/cygwin/packages/petsc-dev SVN = svn HG = hg SHELL = /usr/bin/sh GREP = /usr/bin/grep MV = /usr/bin/mv PYTHON = /usr/bin/python MKDIR = /usr/bin/mkdir -p SEDINPLACE = /usr/bin/sed -i SED = /usr/bin/sed DIFF = /usr/bin/diff -w GZIP = /usr/bin/gzip RM = /usr/bin/rm -f CP = /usr/bin/cp OMAKE = /usr/bin/make --no-print-directory MAKE_IS_GNUMAKE = 1 MAKE = /usr/bin/make MAKE_NP = 10 OMAKE_PRINTDIR = /usr/bin/make --print-directory MPIEXEC = /cygdrive/c/Program\ Files/MPICH2/bin/mpiexec GDB = /cygdrive/c/MinGW/bin/gdb DSYMUTIL = true TEST_RUNS = C Fortran OPENMP F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex BUILDSHAREDLIB = no CMAKE = /usr/bin/cmake **** arch-mswin-c-optimized/conf/petscrules **** shared_install: - at echo "Now to check if the libraries are working do:" - at echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" - at echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} .F.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $< .f.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $< shared_arch: mpi4py_noinstall: mpi4py: petsc4py: **** arch-mswin-c-optimized/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef S_ISREG #define S_ISREG(a) (((a)&_S_IFMT) == _S_IFREG) #endif #ifndef W_OK #define W_OK 02 #endif #ifndef X_OK #define X_OK 01 #endif #ifndef R_OK #define R_OK 04 #endif #ifndef _USE_MATH_DEFINES #define _USE_MATH_DEFINES 1 #endif #ifndef S_ISDIR #define S_ISDIR(a) (((a)&_S_IFMT) == _S_IFDIR) #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_USE_WINDOWS_GRAPHICS #define PETSC_USE_WINDOWS_GRAPHICS 1 #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_OPENMP #define PETSC_HAVE_OPENMP 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) #endif #ifndef PETSC_HAVE_WINDOWS_H #define PETSC_HAVE_WINDOWS_H 1 #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '/' #endif #ifndef PETSC_HAVE_SETLASTERROR #define PETSC_HAVE_SETLASTERROR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_GETPROCADDRESS #define PETSC_HAVE_GETPROCADDRESS 1 #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib" #endif #ifndef PETSC_HAVE_LARGE_INTEGER_U #define PETSC_HAVE_LARGE_INTEGER_U 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __FUNCTION__ #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED #endif #ifndef PETSC_CANNOT_START_DEBUGGER #define PETSC_CANNOT_START_DEBUGGER 1 #endif #ifndef PETSC_HAVE_FREELIBRARY #define PETSC_HAVE_FREELIBRARY 1 #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __FUNCTION__ #endif #ifndef PETSC_HAVE_GETCOMPUTERNAME #define PETSC_HAVE_GETCOMPUTERNAME 1 #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_O_BINARY #define PETSC_HAVE_O_BINARY 1 #endif #ifndef PETSC_USE_MICROSOFT_TIME #define PETSC_USE_MICROSOFT_TIME 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_LOADLIBRARY #define PETSC_HAVE_LOADLIBRARY 1 #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ';' #endif #ifndef PETSC_HAVE_GETLASTERROR #define PETSC_HAVE_GETLASTERROR 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_HAVE_GET_USER_NAME #define PETSC_HAVE_GET_USER_NAME 1 #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_IO_H #define PETSC_HAVE_IO_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_DIRECT_H #define PETSC_HAVE_DIRECT_H 1 #endif #ifndef PETSC_HAVE_WINDOWSX_H #define PETSC_HAVE_WINDOWSX_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_DOS_H #define PETSC_HAVE_DOS_H 1 #endif #ifndef PETSC_HAVE_MEMORY_H #define PETSC_HAVE_MEMORY_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_WS2TCPIP_H #define PETSC_HAVE_WS2TCPIP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_FORTRAN_CAPS #define PETSC_HAVE_FORTRAN_CAPS 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static __inline #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBWS2_32 #define PETSC_HAVE_LIBWS2_32 1 #endif #ifndef PETSC_HAVE_LIBFMPICH2G #define PETSC_HAVE_LIBFMPICH2G 1 #endif #ifndef PETSC_HAVE_LIBMPI #define PETSC_HAVE_LIBMPI 1 #endif #ifndef PETSC_HAVE_LIBUSER32 #define PETSC_HAVE_LIBUSER32 1 #endif #ifndef PETSC_HAVE_LIBGDI32 #define PETSC_HAVE_LIBGDI32 1 #endif #ifndef PETSC_HAVE_LIBADVAPI32 #define PETSC_HAVE_LIBADVAPI32 1 #endif #ifndef PETSC_HAVE_LIBFLAPACK #define PETSC_HAVE_LIBFLAPACK 1 #endif #ifndef PETSC_HAVE_LIBFBLAS #define PETSC_HAVE_LIBFBLAS 1 #endif #ifndef PETSC_HAVE_LIBKERNEL32 #define PETSC_HAVE_LIBKERNEL32 1 #endif #ifndef PETSC_HAVE_LIBFMPICH2 #define PETSC_HAVE_LIBFMPICH2 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-mswin-c-optimized" #endif #ifndef PETSC_DIR #define PETSC_DIR "/cygdrive/c/cygwin/packages/petsc-dev" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE___INT64 #define PETSC_HAVE___INT64 1 #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 4 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_uid_t #define PETSC_uid_t int #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_gid_t #define PETSC_gid_t int #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE__LSEEK #define PETSC_HAVE__LSEEK 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE__GETCWD #define PETSC_HAVE__GETCWD 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE__SLEEP #define PETSC_HAVE__SLEEP 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE__VSNPRINTF #define PETSC_HAVE__VSNPRINTF 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_STRICMP #define PETSC_HAVE_STRICMP 1 #endif #ifndef PETSC_HAVE__SNPRINTF #define PETSC_HAVE__SNPRINTF 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE__ACCESS #define PETSC_HAVE__ACCESS 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_BLASLAPACK_CAPS #define PETSC_BLASLAPACK_CAPS 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE__ISNAN #define PETSC_HAVE__ISNAN 1 #endif #ifndef PETSC_HAVE__FINITE #define PETSC_HAVE__FINITE 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_MISSING_SIGUSR2 #define PETSC_MISSING_SIGUSR2 1 #endif #ifndef PETSC_MISSING_SIGURG #define PETSC_MISSING_SIGURG 1 #endif #ifndef PETSC_MISSING_SIGPIPE #define PETSC_MISSING_SIGPIPE 1 #endif #ifndef PETSC_MISSING_SIGHUP #define PETSC_MISSING_SIGHUP 1 #endif #ifndef PETSC_MISSING_SIGSTOP #define PETSC_MISSING_SIGSTOP 1 #endif #ifndef PETSC_MISSING_SIGSYS #define PETSC_MISSING_SIGSYS 1 #endif #ifndef PETSC_MISSING_SIGCONT #define PETSC_MISSING_SIGCONT 1 #endif #ifndef PETSC_HAVE_WSAGETLASTERROR #define PETSC_HAVE_WSAGETLASTERROR 1 #endif #ifndef PETSC_HAVE_CLOSESOCKET #define PETSC_HAVE_CLOSESOCKET 1 #endif #ifndef PETSC_MISSING_SIGTSTP #define PETSC_MISSING_SIGTSTP 1 #endif #ifndef PETSC_MISSING_SIGCHLD #define PETSC_MISSING_SIGCHLD 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_MISSING_SIGUSR1 #define PETSC_MISSING_SIGUSR1 1 #endif #ifndef PETSC_MISSING_SIGTRAP #define PETSC_MISSING_SIGTRAP 1 #endif #ifndef PETSC_MISSING_SIGQUIT #define PETSC_MISSING_SIGQUIT 1 #endif #ifndef PETSC_MISSING_SIGBUS #define PETSC_MISSING_SIGBUS 1 #endif #ifndef PETSC_HAVE_WINSOCK2_H #define PETSC_HAVE_WINSOCK2_H 1 #endif #ifndef PETSC_MISSING_SIGALRM #define PETSC_MISSING_SIGALRM 1 #endif #ifndef PETSC_NEEDS_UTYPE_TYPEDEFS #define PETSC_NEEDS_UTYPE_TYPEDEFS 1 #endif #ifndef PETSC_MISSING_SIGKILL #define PETSC_MISSING_SIGKILL 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_THREADCOMM_ACTIVE #define PETSC_THREADCOMM_ACTIVE 1 #endif #endif **** arch-mswin-c-optimized/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN typedef int gid_t; typedef int uid_t; typedef int int32_t; typedef int mode_t; typedef int pid_t; #if defined(__cplusplus) extern "C" { int getdomainname(char *, int); double drand48(); void srand48(long); } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: Build : Set default architecture to arch-mswin-c-optimized in conf/petscvariables File creation : Created arch-mswin-c-optimized/conf/reconfigure-arch-mswin-c-optimized.py for automatic reconfiguration Framework: File creation : Created makefile configure header arch-mswin-c-optimized/conf/petscvariables File creation : Created makefile configure header arch-mswin-c-optimized/conf/petscvariables File creation : Created configure header arch-mswin-c-optimized/include/petscconf.h File creation : Created C specific configure header arch-mswin-c-optimized/include/petscfix.h Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Compilers: C Compiler: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -MT -wd4996 -Z7 -openmp C++ Compiler: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -MT -GR -EHsc -Z7 -Zm200 -openmp -TP Fortran Compiler: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -MT -Z7 -fpp -openmp Linkers: Static linker: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a make: MPI: Includes: -I/cygdrive/c/Program\ Files/MPICH2/include Library: /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2.lib /cygdrive/c/Program\ Files/MPICH2/lib/fmpich2g.lib /cygdrive/c/Program\ Files/MPICH2/lib/mpi.lib BLAS/LAPACK: -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lflapack -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -L/cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-optimized/lib -lfblas cmake: Arch: PETSc: PETSC_ARCH: arch-mswin-c-optimized PETSC_DIR: /cygdrive/c/cygwin/packages/petsc-dev Clanguage: C Scalar type: real Precision: double Memory alignment: 16 shared libraries: disabled xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev PETSC_ARCH=arch-mswin-c-optimized all or (experimental with python): PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev PETSC_ARCH=arch-mswin-c-optimized ./config/builder.py xxx=========================================================================xxx From jed at jedbrown.org Wed Jan 29 20:08:03 2014 From: jed at jedbrown.org (Jed Brown) Date: Wed, 29 Jan 2014 19:08:03 -0700 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP In-Reply-To: <52E9AEE6.90408@gmail.com> References: <52E94835.6080207@gmail.com> <52E9715E.20207@mcs.anl.gov> <52E9AEE6.90408@gmail.com> Message-ID: <87ha8mi5mk.fsf@jedbrown.org> Danyang Su writes: > Hi Karli, > > "--with-threadcomm --with-openmp" can work when configure PETSc with > MPI-OpenMP. Sorry for making a mistake before. > The program can be compiled but I got a new error while running my program. > > Error: Attempting to use an MPI routine before initializing MPICH > > This error occurs when calling MPI_SCATTERV. I have already called > PetscInitialize, and MPI_BCAST, which is just before the calling of > MPI_SCATTERV, can also work without throwing error. > > When PETSc is configured without openmp, there is no error in this section. Are you calling this inside an omp parallel block? Are you initializing MPI with MPI_THREAD_MULTIPLE? Do you have other threads doing something with MPI? I'm afraid we'll need a reproducible test case if it still doesn't work for you. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From danyang.su at gmail.com Wed Jan 29 20:29:54 2014 From: danyang.su at gmail.com (Danyang Su) Date: Wed, 29 Jan 2014 18:29:54 -0800 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP In-Reply-To: <87ha8mi5mk.fsf@jedbrown.org> References: <52E94835.6080207@gmail.com> <52E9715E.20207@mcs.anl.gov> <52E9AEE6.90408@gmail.com> <87ha8mi5mk.fsf@jedbrown.org> Message-ID: <52E9B922.9060002@gmail.com> On 29/01/2014 6:08 PM, Jed Brown wrote: > Danyang Su writes: > >> Hi Karli, >> >> "--with-threadcomm --with-openmp" can work when configure PETSc with >> MPI-OpenMP. Sorry for making a mistake before. >> The program can be compiled but I got a new error while running my program. >> >> Error: Attempting to use an MPI routine before initializing MPICH >> >> This error occurs when calling MPI_SCATTERV. I have already called >> PetscInitialize, and MPI_BCAST, which is just before the calling of >> MPI_SCATTERV, can also work without throwing error. >> >> When PETSc is configured without openmp, there is no error in this section. > Are you calling this inside an omp parallel block? Are you initializing > MPI with MPI_THREAD_MULTIPLE? Do you have other threads doing something > with MPI? No, this calling is outside omp block. I didn't initialize MPI with MPI_THREAD_MULTIPLE. The codes of PETSc doesn't change. No other threads are doing anything with MPI. The program crashes in the initialization of simulation. But it is strange that the codes can work with "PETSC for WINDOWS 2.0", which is based on PETSC3.4.2. > > I'm afraid we'll need a reproducible test case if it still doesn't work > for you. From abarua at iit.edu Wed Jan 29 23:25:30 2014 From: abarua at iit.edu (amlan barua) Date: Thu, 30 Jan 2014 10:55:30 +0530 Subject: [petsc-users] Extracting a particular DOF from DMDA vector In-Reply-To: References: Message-ID: Thanks. Let me state my problem more clearly. I have a DMDAVector with n DOFs. My application demands the scattering of individual components into vectors so that I can perform Mat-Vec multiplication on individual DOFs. How do I make sure that the vector to which I want to scatter has same parallel layout as the original DMDAVector with n dofs? Can I create two DMDAVectors, one from a DMDA with n dofs and other from DMDA with 1 dof and everything same otherwise? Amlan On Mon, Jan 27, 2014 at 7:30 PM, Matthew Knepley wrote: > On Mon, Jan 27, 2014 at 1:38 AM, amlan barua wrote: > >> Hi, >> What is the best way of extracting all values corresponding to a >> particular degree of freedom of a DMDA vector? >> > > It depends what you want to do with it. YOu can use DMDAVecGetArrayDOF() > or VecScatterStride(). > > Matt > > >> >> Amlan >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Jan 29 23:27:12 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 29 Jan 2014 23:27:12 -0600 Subject: [petsc-users] Extracting a particular DOF from DMDA vector In-Reply-To: References: Message-ID: On Jan 29, 2014, at 11:25 PM, amlan barua wrote: > Thanks. Let me state my problem more clearly. > I have a DMDAVector with n DOFs. My application demands the scattering of individual components into vectors so that I can perform Mat-Vec multiplication on individual DOFs. How do I make sure that the vector to which I want to scatter has same parallel layout as the original DMDAVector with n dofs? > Can I create two DMDAVectors, one from a DMDA with n dofs and other from DMDA with 1 dof and everything same otherwise? Yes, the will have the same parallel layout. Barry > Amlan > > > On Mon, Jan 27, 2014 at 7:30 PM, Matthew Knepley wrote: > On Mon, Jan 27, 2014 at 1:38 AM, amlan barua wrote: > Hi, > What is the best way of extracting all values corresponding to a particular degree of freedom of a DMDA vector? > > It depends what you want to do with it. YOu can use DMDAVecGetArrayDOF() or VecScatterStride(). > > Matt > > > Amlan > > > > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > -- Norbert Wiener > From tgross at ilsb.tuwien.ac.at Thu Jan 30 03:40:41 2014 From: tgross at ilsb.tuwien.ac.at (Thomas Gross) Date: Thu, 30 Jan 2014 10:40:41 +0100 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <87r47qi83e.fsf@jedbrown.org> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> Message-ID: Please find enclosed the output for GAMG using -mg_levels_ksp_max_it 1: Prometheus: -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -options_left > Prometheus_Large_Log_New.txt Gamg: -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_type richardson -mg_levels_pc_type sor -mg_levels_ksp_max_it 1 >GAMG_Rich_max_it.txt Best regards, Thomas -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: GAMG_Rich_max_it.txt URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: Prometheus_Large_Log_New.txt URL: -------------- next part -------------- On Jan 30, 2014, at 2:14 AM, Jed Brown wrote: > Thomas Gross writes: > >> I have now compiled Petsc 3.2.0 with Prometheus and Petsc 3.4.3 with GAMG using the same compiler. Furthermore I am using the same MPI implementation for both runs. Still Prometheus is considerably faster (see attached log files). >> >> Prometheus: >> -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -options_left > Prometheus_Large_Log_New.txt >> >> Gamg: >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > GAMG_Large_max_it_log_New.txt >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type richardson -mg_levels_pc_type sor > GAMG_Large_Rich_Log_New.txt > > Can you add -mg_levels_ksp_max_it 1 to this last configuration? I see a > lot of time in MatSOR. We can actually speed that up slightly with some > extra caching, which may be worthwhile. > > We're seeing a bit lower performance in MatMult with GAMG, perhaps > because we are not using block formats specialized for elasticity. > > Mark, what else is different? What does Prometheus do differently in > setup (not the bottleneck here, but I'm curious). From knepley at gmail.com Thu Jan 30 07:52:28 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 30 Jan 2014 07:52:28 -0600 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: <52E9A8B2.9010603@columbia.edu> References: <52E2F2F0.1@columbia.edu> <52E6B4EE.9040001@columbia.edu> <52E7D6C8.7030605@columbia.edu> <52E9A8B2.9010603@columbia.edu> Message-ID: On Wed, Jan 29, 2014 at 7:19 PM, Luc Berger-Vergiat wrote: > Hi Matt, > I thought I would spend the time writing a small c example of what I am > doing in my FORTRAN code so that you can more easily see what it is I am > doing wrong. > > I attached the code and its makefile. I run the code the following > arguments: > > -ksp_type gmres -pc_type fieldsplit -fieldsplit_0_pc_type ilu > -fieldsplit_0_ksp_type preonly -fieldsplit_1_pc_type jacobi > -fieldsplit_1_ksp_type preonly -ksp_view -ksp_monitor > 1) You need to also call PetscSectionSetDof() in order to get full sizes. I don't just add up the fields. 2) You need to set the DM into the KSP using KSPSetDM() 3) You need to make the DM inactive if you want to provide your own Mat/Vec using KSPSetDMActive() 4) Then you can get rid of the special code for FS 5) Your options were wrong because you named the fields I include a revised code sample, and you should run with -ksp_type gmres -pc_type fieldsplit -fieldsplit_Field_0_pc_type ilu -fieldsplit_Field_0_ksp_type preonly -fieldsplit_Field_1_pc_type jacobi -fieldsplit_Field_1_ksp_type preonly -ksp_view -ksp_monitor Thanks, Matt and get the following output: > > start=1, End=9. > PetscSection with 2 fields > field 0 with 1 components > Process 0: > ( 1) dim 1 offset 0 > ( 2) dim 1 offset 0 > ( 3) dim 1 offset 0 > ( 4) dim 1 offset 0 > ( 5) dim 0 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > field 1 with 1 components > Process 0: > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 1 offset 0 > ( 6) dim 1 offset 0 > ( 7) dim 1 offset 0 > ( 8) dim 1 offset 0 > PC flag for GetDMSplits: true > 0 KSP Residual norm 0.000000000000e+00 > KSP Object: 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt > Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object: 1 MPI processes > type: fieldsplit > FieldSplit with MULTIPLICATIVE composition: total splits = 2 > Solver info for each split is in the following KSP objects: > Split number 0 Defined by IS > KSP Object: (fieldsplit_Field_0_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_0_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 1 Defined by IS > KSP Object: (fieldsplit_Field_1_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_1_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=8, cols=8 > total: nonzeros=64, allocated nonzeros=160 > total number of mallocs used during MatSetValues calls =8 > using I-node routines: found 2 nodes, limit used is 5 > The solution to this problem is: > Vector Object: 1 MPI processes > type: seq > 0 > 0 > 0 > 0 > 0 > 0 > 0 > 0 > WARNING! There are options you set that were not used! > WARNING! could be spelling mistake, etc! > Option left: name:-fieldsplit_0_ksp_type value: preonly > Option left: name:-fieldsplit_0_pc_type value: ilu > Option left: name:-fieldsplit_1_ksp_type value: preonly > Option left: name:-fieldsplit_1_pc_type value: jacobi > > when I run it with the more simple arguements: > > -ksp_type gmres -pc_type jacobi -ksp_view -ksp_monitor > > I get the following output: > > start=1, End=9. > PetscSection with 2 fields > field 0 with 1 components > Process 0: > ( 1) dim 1 offset 0 > ( 2) dim 1 offset 0 > ( 3) dim 1 offset 0 > ( 4) dim 1 offset 0 > ( 5) dim 0 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > field 1 with 1 components > Process 0: > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 1 offset 0 > ( 6) dim 1 offset 0 > ( 7) dim 1 offset 0 > ( 8) dim 1 offset 0 > 0 KSP Residual norm 4.759858191165e+00 > 1 KSP Residual norm 2.344421567248e+00 > 2 KSP Residual norm 3.208390394507e-01 > 3 KSP Residual norm 7.171256210359e-02 > 4 KSP Residual norm 1.301032901980e-02 > 5 KSP Residual norm 1.104121978197e-15 > KSP Object: 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt > Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object: 1 MPI processes > type: jacobi > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=8, cols=8 > total: nonzeros=64, allocated nonzeros=160 > total number of mallocs used during MatSetValues calls =8 > using I-node routines: found 2 nodes, limit used is 5 > The solution to this problem is: > Vector Object: 1 MPI processes > type: seq > -0.977778 > -0.0444444 > -0.844444 > -0.327778 > 3 > 1 > 1.5 > 3 > > It is obvious that something goes wrong in the fieldsplit, I'm just > clueless to what it is. I think that everything is setup correctly but I'm > missing something to get the KSP to recognize my splits... > > Thanks for your help. > > Best, > Luc > > On 01/28/2014 11:20 AM, Matthew Knepley wrote: > > On Tue, Jan 28, 2014 at 10:11 AM, Luc Berger-Vergiat > wrote: > >> What I don't really understand is why the size of all the sub fields is >> zero? >> As you can see all the matrix object in my fieldsplit preconditioner have >> total:nonzeros=0, allocated nonzeros=0. >> >> This seems strange since I issued the following command: >> call DMSetDefaultSection(FSDM, FSSection, ierr) >> > > That section looks like you never called PetscSectionSetUp(). > > Matt > > >> with a the following FSSection: >> PetscSection with 4 fields >> field 0 with 1 components >> Process 0: >> ( 0) dim 0 offset 0 >> ( 1) dim 1 offset 0 >> ( 2) dim 0 offset 0 >> ( 3) dim 0 offset 0 >> ( 4) dim 1 offset 0 >> ( 5) dim 0 offset 0 >> ( 6) dim 0 offset 0 >> ( 7) dim 0 offset 0 >> ( 8) dim 0 offset 0 >> ( 9) dim 0 offset 0 >> ( 10) dim 0 offset 0 >> ( 11) dim 0 offset 0 >> ( 12) dim 0 offset 0 >> ( 13) dim 0 offset 0 >> ( 14) dim 0 offset 0 >> ( 15) dim 0 offset 0 >> field 1 with 1 components >> Process 0: >> ( 0) dim 1 offset 0 >> ( 1) dim 0 offset 1 >> ( 2) dim 1 offset 0 >> ( 3) dim 1 offset 0 >> ( 4) dim 0 offset 1 >> ( 5) dim 1 offset 0 >> ( 6) dim 0 offset 0 >> ( 7) dim 0 offset 0 >> ( 8) dim 0 offset 0 >> ( 9) dim 0 offset 0 >> ( 10) dim 0 offset 0 >> ( 11) dim 0 offset 0 >> ( 12) dim 0 offset 0 >> ( 13) dim 0 offset 0 >> ( 14) dim 0 offset 0 >> ( 15) dim 0 offset 0 >> field 2 with 1 components >> Process 0: >> ( 0) dim 0 offset 1 >> ( 1) dim 0 offset 1 >> ( 2) dim 0 offset 1 >> ( 3) dim 0 offset 1 >> ( 4) dim 0 offset 1 >> ( 5) dim 0 offset 1 >> ( 6) dim 1 offset 0 >> ( 7) dim 1 offset 0 >> ( 8) dim 1 offset 0 >> ( 9) dim 1 offset 0 >> ( 10) dim 1 offset 0 >> ( 11) dim 1 offset 0 >> ( 12) dim 0 offset 0 >> ( 13) dim 0 offset 0 >> ( 14) dim 0 offset 0 >> ( 15) dim 0 offset 0 >> field 3 with 1 components >> Process 0: >> ( 0) dim 0 offset 1 >> ( 1) dim 0 offset 1 >> ( 2) dim 0 offset 1 >> ( 3) dim 0 offset 1 >> ( 4) dim 0 offset 1 >> ( 5) dim 0 offset 1 >> ( 6) dim 0 offset 1 >> ( 7) dim 0 offset 1 >> ( 8) dim 0 offset 1 >> ( 9) dim 0 offset 1 >> ( 10) dim 0 offset 1 >> ( 11) dim 0 offset 1 >> ( 12) dim 1 offset 0 >> ( 13) dim 1 offset 0 >> ( 14) dim 1 offset 0 >> ( 15) dim 1 offset 0 >> >> I thought that by using DMSetDefaultSection() I would be done setting the >> fields and that the fieldsplit would detect that section and use it to >> construct the splits. >> >> Should I use another command to tell the PC to use the DM section? >> >> Best, >> Luc >> >> On 01/28/2014 10:25 AM, Matthew Knepley wrote: >> >> On Mon, Jan 27, 2014 at 1:35 PM, Luc Berger-Vergiat > > wrote: >> >>> Thanks Matt, >>> this indeed setting the number of fields earlier solve my issue! >>> >>> I have now made some progress getting my DM setup but I am having >>> troubles setting my splitfield options. >>> I ran my problem with the -ksp_view option to see what is going on and I >>> guess that somehow the section that I define in my DM is not used by the >>> preconditioner to split the fields. >>> Here is the output of PETSc >>> >>> KSP Object: 1 MPI processes >>> type: gmres >>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt >>> Orthogonalization with no iterative refinement >>> GMRES: happy breakdown tolerance 1e-30 >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-08, absolute=1e-16, divergence=1e+16 >>> left preconditioning >>> using PRECONDITIONED norm type for convergence test >>> PC Object: 1 MPI processes >>> type: fieldsplit >>> FieldSplit with MULTIPLICATIVE composition: total splits = 4 >>> Solver info for each split is in the following KSP objects: >>> Split number 0 Defined by IS >>> >> >> There are 4 splits here and they are defined by an IS. Why do you think >> that is not what you asked for? >> >> Thanks, >> >> Matt >> >> >>> KSP Object: (fieldsplit_Field_0_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_0_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> Split number 1 Defined by IS >>> KSP Object: (fieldsplit_Field_1_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_1_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> Split number 2 Defined by IS >>> KSP Object: (fieldsplit_Field_2_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_2_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> Split number 3 Defined by IS >>> KSP Object: (fieldsplit_Field_3_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_3_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=16, cols=16 >>> total: nonzeros=256, allocated nonzeros=256 >>> total number of mallocs used during MatSetValues calls =0 >>> using I-node routines: found 4 nodes, limit used is 5 >>> >>> I am also attaching part of my code which I use to generate the DM, the >>> KSP and the PC objects. >>> >>> Best, >>> Luc >>> >>> On 01/25/2014 10:31 AM, Matthew Knepley wrote: >>> >>> On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat < >>> lb2653 at columbia.edu> wrote: >>> >>>> Hi all, >>>> I want to use PETSc as a solver for an FEM problem: modelization of >>>> shear bands using a 4 fields mixed formulation. >>>> >>>> So far I am just trying to set up a two fields in a Petsc section, >>>> assign dof too each field and then set up the section to pass it to a DM. I >>>> am taking this approach because in general I want for fieldsplit to work >>>> purely on the algebraic level without knowledge of boundary conditions or >>>> geometry. >>>> >>>> As of now I have issues when I try to assign a point and its associated >>>> degree of freedom to a field using: PetscSectionSetFieldDof. >>>> Is this the correct way to associate a dof/point to a field? >>>> >>> >>> You have to set the number of fields before the chart. I am updating >>> the docs. >>> >>> Thanks, >>> >>> Matt >>> >>> >>>> I attached an example code and its makefile. >>>> >>>> -- >>>> Best, >>>> Luc >>>> >>>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: DMshell_ex1.c Type: text/x-csrc Size: 4840 bytes Desc: not available URL: From lb2653 at columbia.edu Thu Jan 30 08:36:57 2014 From: lb2653 at columbia.edu (Luc Berger-Vergiat) Date: Thu, 30 Jan 2014 09:36:57 -0500 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: References: <52E2F2F0.1@columbia.edu> <52E6B4EE.9040001@columbia.edu> <52E7D6C8.7030605@columbia.edu> <52E9A8B2.9010603@columbia.edu> Message-ID: <52EA6389.3090505@columbia.edu> Thank you so much this helps a lot with my research. I hope that you can reuse that little example code for some documentation on DMShell. The features available thru that object are really good, it is just a little hard (at least for me) to work around all the functions call to set it up. For instance I understand that the DM can be used in the KSP to work on the Kmat operator but what is the purpose of the PCSetDM? Using the DM on the preconditioner operator passed to the KSP? Thanks again for your help, I will try to transfer this to FORTRAN! Cheers! Best, Luc On 01/30/2014 08:52 AM, Matthew Knepley wrote: > On Wed, Jan 29, 2014 at 7:19 PM, Luc Berger-Vergiat > > wrote: > > Hi Matt, > I thought I would spend the time writing a small c example of what > I am doing in my FORTRAN code so that you can more easily see what > it is I am doing wrong. > > I attached the code and its makefile. I run the code the following > arguments: > > -ksp_type gmres -pc_type fieldsplit -fieldsplit_0_pc_type ilu > -fieldsplit_0_ksp_type preonly -fieldsplit_1_pc_type jacobi > -fieldsplit_1_ksp_type preonly -ksp_view -ksp_monitor > > > 1) You need to also call PetscSectionSetDof() in order to get full > sizes. I don't just add up the fields. > > 2) You need to set the DM into the KSP using KSPSetDM() > > 3) You need to make the DM inactive if you want to provide your own > Mat/Vec using KSPSetDMActive() > > 4) Then you can get rid of the special code for FS > > 5) Your options were wrong because you named the fields > > I include a revised code sample, and you should run with > > -ksp_type gmres -pc_type fieldsplit -fieldsplit_Field_0_pc_type ilu > -fieldsplit_Field_0_ksp_type preonly -fieldsplit_Field_1_pc_type > jacobi -fieldsplit_Field_1_ksp_type preonly -ksp_view -ksp_monitor > > Thanks, > > Matt > > and get the following output: > > start=1, End=9. > PetscSection with 2 fields > field 0 with 1 components > Process 0: > ( 1) dim 1 offset 0 > ( 2) dim 1 offset 0 > ( 3) dim 1 offset 0 > ( 4) dim 1 offset 0 > ( 5) dim 0 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > field 1 with 1 components > Process 0: > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 1 offset 0 > ( 6) dim 1 offset 0 > ( 7) dim 1 offset 0 > ( 8) dim 1 offset 0 > PC flag for GetDMSplits: true > 0 KSP Residual norm 0.000000000000e+00 > KSP Object: 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt > Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object: 1 MPI processes > type: fieldsplit > FieldSplit with MULTIPLICATIVE composition: total splits = 2 > Solver info for each split is in the following KSP objects: > Split number 0 Defined by IS > KSP Object: (fieldsplit_Field_0_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_0_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues > calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > Split number 1 Defined by IS > KSP Object: (fieldsplit_Field_1_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using NONE norm type for convergence test > PC Object: (fieldsplit_Field_1_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > using diagonal shift on blocks to prevent zero pivot > matrix ordering: natural > factor fill ratio given 1, needed 1 > Factored matrix follows: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > package used to perform factorization: petsc > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues > calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=0, cols=0 > total: nonzeros=0, allocated nonzeros=0 > total number of mallocs used during MatSetValues calls =0 > not using I-node routines > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=8, cols=8 > total: nonzeros=64, allocated nonzeros=160 > total number of mallocs used during MatSetValues calls =8 > using I-node routines: found 2 nodes, limit used is 5 > The solution to this problem is: > Vector Object: 1 MPI processes > type: seq > 0 > 0 > 0 > 0 > 0 > 0 > 0 > 0 > WARNING! There are options you set that were not used! > WARNING! could be spelling mistake, etc! > Option left: name:-fieldsplit_0_ksp_type value: preonly > Option left: name:-fieldsplit_0_pc_type value: ilu > Option left: name:-fieldsplit_1_ksp_type value: preonly > Option left: name:-fieldsplit_1_pc_type value: jacobi > > when I run it with the more simple arguements: > > -ksp_type gmres -pc_type jacobi -ksp_view -ksp_monitor > > I get the following output: > > start=1, End=9. > PetscSection with 2 fields > field 0 with 1 components > Process 0: > ( 1) dim 1 offset 0 > ( 2) dim 1 offset 0 > ( 3) dim 1 offset 0 > ( 4) dim 1 offset 0 > ( 5) dim 0 offset 0 > ( 6) dim 0 offset 0 > ( 7) dim 0 offset 0 > ( 8) dim 0 offset 0 > field 1 with 1 components > Process 0: > ( 1) dim 0 offset 1 > ( 2) dim 0 offset 1 > ( 3) dim 0 offset 1 > ( 4) dim 0 offset 1 > ( 5) dim 1 offset 0 > ( 6) dim 1 offset 0 > ( 7) dim 1 offset 0 > ( 8) dim 1 offset 0 > 0 KSP Residual norm 4.759858191165e+00 > 1 KSP Residual norm 2.344421567248e+00 > 2 KSP Residual norm 3.208390394507e-01 > 3 KSP Residual norm 7.171256210359e-02 > 4 KSP Residual norm 1.301032901980e-02 > 5 KSP Residual norm 1.104121978197e-15 > KSP Object: 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt > Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000 > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object: 1 MPI processes > type: jacobi > linear system matrix = precond matrix: > Matrix Object: 1 MPI processes > type: seqaij > rows=8, cols=8 > total: nonzeros=64, allocated nonzeros=160 > total number of mallocs used during MatSetValues calls =8 > using I-node routines: found 2 nodes, limit used is 5 > The solution to this problem is: > Vector Object: 1 MPI processes > type: seq > -0.977778 > -0.0444444 > -0.844444 > -0.327778 > 3 > 1 > 1.5 > 3 > > It is obvious that something goes wrong in the fieldsplit, I'm > just clueless to what it is. I think that everything is setup > correctly but I'm missing something to get the KSP to recognize my > splits... > > Thanks for your help. > > Best, > Luc > > On 01/28/2014 11:20 AM, Matthew Knepley wrote: >> On Tue, Jan 28, 2014 at 10:11 AM, Luc Berger-Vergiat >> > wrote: >> >> What I don't really understand is why the size of all the sub >> fields is zero? >> As you can see all the matrix object in my fieldsplit >> preconditioner have total:nonzeros=0, allocated nonzeros=0. >> >> This seems strange since I issued the following command: >> //call DMSetDefaultSection(FSDM, FSSection, ierr) >> >> >> That section looks like you never called PetscSectionSetUp(). >> >> Matt >> >> with a the following FSSection: >> PetscSection with 4 fields >> field 0 with 1 components >> Process 0: >> ( 0) dim 0 offset 0 >> ( 1) dim 1 offset 0 >> ( 2) dim 0 offset 0 >> ( 3) dim 0 offset 0 >> ( 4) dim 1 offset 0 >> ( 5) dim 0 offset 0 >> ( 6) dim 0 offset 0 >> ( 7) dim 0 offset 0 >> ( 8) dim 0 offset 0 >> ( 9) dim 0 offset 0 >> ( 10) dim 0 offset 0 >> ( 11) dim 0 offset 0 >> ( 12) dim 0 offset 0 >> ( 13) dim 0 offset 0 >> ( 14) dim 0 offset 0 >> ( 15) dim 0 offset 0 >> field 1 with 1 components >> Process 0: >> ( 0) dim 1 offset 0 >> ( 1) dim 0 offset 1 >> ( 2) dim 1 offset 0 >> ( 3) dim 1 offset 0 >> ( 4) dim 0 offset 1 >> ( 5) dim 1 offset 0 >> ( 6) dim 0 offset 0 >> ( 7) dim 0 offset 0 >> ( 8) dim 0 offset 0 >> ( 9) dim 0 offset 0 >> ( 10) dim 0 offset 0 >> ( 11) dim 0 offset 0 >> ( 12) dim 0 offset 0 >> ( 13) dim 0 offset 0 >> ( 14) dim 0 offset 0 >> ( 15) dim 0 offset 0 >> field 2 with 1 components >> Process 0: >> ( 0) dim 0 offset 1 >> ( 1) dim 0 offset 1 >> ( 2) dim 0 offset 1 >> ( 3) dim 0 offset 1 >> ( 4) dim 0 offset 1 >> ( 5) dim 0 offset 1 >> ( 6) dim 1 offset 0 >> ( 7) dim 1 offset 0 >> ( 8) dim 1 offset 0 >> ( 9) dim 1 offset 0 >> ( 10) dim 1 offset 0 >> ( 11) dim 1 offset 0 >> ( 12) dim 0 offset 0 >> ( 13) dim 0 offset 0 >> ( 14) dim 0 offset 0 >> ( 15) dim 0 offset 0 >> field 3 with 1 components >> Process 0: >> ( 0) dim 0 offset 1 >> ( 1) dim 0 offset 1 >> ( 2) dim 0 offset 1 >> ( 3) dim 0 offset 1 >> ( 4) dim 0 offset 1 >> ( 5) dim 0 offset 1 >> ( 6) dim 0 offset 1 >> ( 7) dim 0 offset 1 >> ( 8) dim 0 offset 1 >> ( 9) dim 0 offset 1 >> ( 10) dim 0 offset 1 >> ( 11) dim 0 offset 1 >> ( 12) dim 1 offset 0 >> ( 13) dim 1 offset 0 >> ( 14) dim 1 offset 0 >> ( 15) dim 1 offset 0 >> >> I thought that by using DMSetDefaultSection() I would be done >> setting the fields and that the fieldsplit would detect that >> section and use it to construct the splits. >> >> Should I use another command to tell the PC to use the DM >> section? >> >> Best, >> Luc >> >> On 01/28/2014 10:25 AM, Matthew Knepley wrote: >>> On Mon, Jan 27, 2014 at 1:35 PM, Luc Berger-Vergiat >>> > wrote: >>> >>> Thanks Matt, >>> this indeed setting the number of fields earlier solve >>> my issue! >>> >>> I have now made some progress getting my DM setup but I >>> am having troubles setting my splitfield options. >>> I ran my problem with the -ksp_view option to see what >>> is going on and I guess that somehow the section that I >>> define in my DM is not used by the preconditioner to >>> split the fields. >>> Here is the output of PETSc >>> >>> KSP Object: 1 MPI processes >>> type: gmres >>> GMRES: restart=30, using Classical (unmodified) >>> Gram-Schmidt Orthogonalization with no iterative refinement >>> GMRES: happy breakdown tolerance 1e-30 >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-08, absolute=1e-16, >>> divergence=1e+16 >>> left preconditioning >>> using PRECONDITIONED norm type for convergence test >>> PC Object: 1 MPI processes >>> type: fieldsplit >>> FieldSplit with MULTIPLICATIVE composition: total >>> splits = 4 >>> Solver info for each split is in the following KSP >>> objects: >>> Split number 0 Defined by IS >>> >>> >>> There are 4 splits here and they are defined by an IS. Why >>> do you think that is not what you asked for? >>> >>> Thanks, >>> >>> Matt >>> >>> KSP Object: (fieldsplit_Field_0_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, >>> divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_0_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during >>> MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues >>> calls =0 >>> not using I-node routines >>> Split number 1 Defined by IS >>> KSP Object: (fieldsplit_Field_1_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, >>> divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_1_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during >>> MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues >>> calls =0 >>> not using I-node routines >>> Split number 2 Defined by IS >>> KSP Object: (fieldsplit_Field_2_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, >>> divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_2_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during >>> MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues >>> calls =0 >>> not using I-node routines >>> Split number 3 Defined by IS >>> KSP Object: (fieldsplit_Field_3_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, >>> divergence=10000 >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fieldsplit_Field_3_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> using diagonal shift on blocks to prevent zero pivot >>> matrix ordering: natural >>> factor fill ratio given 1, needed 1 >>> Factored matrix follows: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> package used to perform factorization: petsc >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during >>> MatSetValues calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=0, cols=0 >>> total: nonzeros=0, allocated nonzeros=0 >>> total number of mallocs used during MatSetValues >>> calls =0 >>> not using I-node routines >>> linear system matrix = precond matrix: >>> Matrix Object: 1 MPI processes >>> type: seqaij >>> rows=16, cols=16 >>> total: nonzeros=256, allocated nonzeros=256 >>> total number of mallocs used during MatSetValues >>> calls =0 >>> using I-node routines: found 4 nodes, limit used is 5 >>> >>> I am also attaching part of my code which I use to >>> generate the DM, the KSP and the PC objects. >>> >>> Best, >>> Luc >>> >>> On 01/25/2014 10:31 AM, Matthew Knepley wrote: >>>> On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat >>>> > wrote: >>>> >>>> Hi all, >>>> I want to use PETSc as a solver for an FEM problem: >>>> modelization of shear bands using a 4 fields mixed >>>> formulation. >>>> >>>> So far I am just trying to set up a two fields in a >>>> Petsc section, assign dof too each field and then >>>> set up the section to pass it to a DM. I am taking >>>> this approach because in general I want for >>>> fieldsplit to work purely on the algebraic level >>>> without knowledge of boundary conditions or geometry. >>>> >>>> As of now I have issues when I try to assign a >>>> point and its associated degree of freedom to a >>>> field using: PetscSectionSetFieldDof. >>>> Is this the correct way to associate a dof/point to >>>> a field? >>>> >>>> >>>> You have to set the number of fields before the chart. >>>> I am updating the docs. >>>> >>>> Thanks, >>>> >>>> Matt >>>> >>>> I attached an example code and its makefile. >>>> >>>> -- >>>> Best, >>>> Luc >>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they >>>> begin their experiments is infinitely more interesting >>>> than any results to which their experiments lead. >>>> -- Norbert Wiener >>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin >>> their experiments is infinitely more interesting than any >>> results to which their experiments lead. >>> -- Norbert Wiener >> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to >> which their experiments lead. >> -- Norbert Wiener > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 30 09:05:56 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 30 Jan 2014 09:05:56 -0600 Subject: [petsc-users] Setting up a PETSc section for field-split In-Reply-To: <52EA6389.3090505@columbia.edu> References: <52E2F2F0.1@columbia.edu> <52E6B4EE.9040001@columbia.edu> <52E7D6C8.7030605@columbia.edu> <52E9A8B2.9010603@columbia.edu> <52EA6389.3090505@columbia.edu> Message-ID: On Thu, Jan 30, 2014 at 8:36 AM, Luc Berger-Vergiat wrote: > Thank you so much this helps a lot with my research. I hope that you can > reuse that little example code for some documentation on DMShell. The > features available thru that object are really good, it is just a little > hard (at least for me) to work around all the functions call to set it up. > > For instance I understand that the DM can be used in the KSP to work on > the Kmat operator but what is the purpose of the PCSetDM? Using the DM on > the preconditioner operator passed to the KSP? > KSPSetDM() calls PCSetDM() internally. All the solver objects use the DM for sizes of Vec/Mat objects, and also for dividing up the problem. Thanks, Matt > Thanks again for your help, I will try to transfer this to FORTRAN! > > Cheers! > > Best, > Luc > > On 01/30/2014 08:52 AM, Matthew Knepley wrote: > > On Wed, Jan 29, 2014 at 7:19 PM, Luc Berger-Vergiat wrote: > >> Hi Matt, >> I thought I would spend the time writing a small c example of what I am >> doing in my FORTRAN code so that you can more easily see what it is I am >> doing wrong. >> >> I attached the code and its makefile. I run the code the following >> arguments: >> >> -ksp_type gmres -pc_type fieldsplit -fieldsplit_0_pc_type ilu >> -fieldsplit_0_ksp_type preonly -fieldsplit_1_pc_type jacobi >> -fieldsplit_1_ksp_type preonly -ksp_view -ksp_monitor >> > > 1) You need to also call PetscSectionSetDof() in order to get full > sizes. I don't just add up the fields. > > 2) You need to set the DM into the KSP using KSPSetDM() > > 3) You need to make the DM inactive if you want to provide your own > Mat/Vec using KSPSetDMActive() > > 4) Then you can get rid of the special code for FS > > 5) Your options were wrong because you named the fields > > I include a revised code sample, and you should run with > > -ksp_type gmres -pc_type fieldsplit -fieldsplit_Field_0_pc_type ilu > -fieldsplit_Field_0_ksp_type preonly -fieldsplit_Field_1_pc_type jacobi > -fieldsplit_Field_1_ksp_type preonly -ksp_view -ksp_monitor > > Thanks, > > Matt > > and get the following output: >> >> start=1, End=9. >> PetscSection with 2 fields >> field 0 with 1 components >> Process 0: >> ( 1) dim 1 offset 0 >> ( 2) dim 1 offset 0 >> ( 3) dim 1 offset 0 >> ( 4) dim 1 offset 0 >> ( 5) dim 0 offset 0 >> ( 6) dim 0 offset 0 >> ( 7) dim 0 offset 0 >> ( 8) dim 0 offset 0 >> field 1 with 1 components >> Process 0: >> ( 1) dim 0 offset 1 >> ( 2) dim 0 offset 1 >> ( 3) dim 0 offset 1 >> ( 4) dim 0 offset 1 >> ( 5) dim 1 offset 0 >> ( 6) dim 1 offset 0 >> ( 7) dim 1 offset 0 >> ( 8) dim 1 offset 0 >> PC flag for GetDMSplits: true >> 0 KSP Residual norm 0.000000000000e+00 >> KSP Object: 1 MPI processes >> type: gmres >> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt >> Orthogonalization with no iterative refinement >> GMRES: happy breakdown tolerance 1e-30 >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using PRECONDITIONED norm type for convergence test >> PC Object: 1 MPI processes >> type: fieldsplit >> FieldSplit with MULTIPLICATIVE composition: total splits = 2 >> Solver info for each split is in the following KSP objects: >> Split number 0 Defined by IS >> KSP Object: (fieldsplit_Field_0_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_0_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> Split number 1 Defined by IS >> KSP Object: (fieldsplit_Field_1_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fieldsplit_Field_1_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> using diagonal shift on blocks to prevent zero pivot >> matrix ordering: natural >> factor fill ratio given 1, needed 1 >> Factored matrix follows: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> package used to perform factorization: petsc >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=0, cols=0 >> total: nonzeros=0, allocated nonzeros=0 >> total number of mallocs used during MatSetValues calls =0 >> not using I-node routines >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=8, cols=8 >> total: nonzeros=64, allocated nonzeros=160 >> total number of mallocs used during MatSetValues calls =8 >> using I-node routines: found 2 nodes, limit used is 5 >> The solution to this problem is: >> Vector Object: 1 MPI processes >> type: seq >> 0 >> 0 >> 0 >> 0 >> 0 >> 0 >> 0 >> 0 >> WARNING! There are options you set that were not used! >> WARNING! could be spelling mistake, etc! >> Option left: name:-fieldsplit_0_ksp_type value: preonly >> Option left: name:-fieldsplit_0_pc_type value: ilu >> Option left: name:-fieldsplit_1_ksp_type value: preonly >> Option left: name:-fieldsplit_1_pc_type value: jacobi >> >> when I run it with the more simple arguements: >> >> -ksp_type gmres -pc_type jacobi -ksp_view -ksp_monitor >> >> I get the following output: >> >> start=1, End=9. >> PetscSection with 2 fields >> field 0 with 1 components >> Process 0: >> ( 1) dim 1 offset 0 >> ( 2) dim 1 offset 0 >> ( 3) dim 1 offset 0 >> ( 4) dim 1 offset 0 >> ( 5) dim 0 offset 0 >> ( 6) dim 0 offset 0 >> ( 7) dim 0 offset 0 >> ( 8) dim 0 offset 0 >> field 1 with 1 components >> Process 0: >> ( 1) dim 0 offset 1 >> ( 2) dim 0 offset 1 >> ( 3) dim 0 offset 1 >> ( 4) dim 0 offset 1 >> ( 5) dim 1 offset 0 >> ( 6) dim 1 offset 0 >> ( 7) dim 1 offset 0 >> ( 8) dim 1 offset 0 >> 0 KSP Residual norm 4.759858191165e+00 >> 1 KSP Residual norm 2.344421567248e+00 >> 2 KSP Residual norm 3.208390394507e-01 >> 3 KSP Residual norm 7.171256210359e-02 >> 4 KSP Residual norm 1.301032901980e-02 >> 5 KSP Residual norm 1.104121978197e-15 >> KSP Object: 1 MPI processes >> type: gmres >> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt >> Orthogonalization with no iterative refinement >> GMRES: happy breakdown tolerance 1e-30 >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >> left preconditioning >> using PRECONDITIONED norm type for convergence test >> PC Object: 1 MPI processes >> type: jacobi >> linear system matrix = precond matrix: >> Matrix Object: 1 MPI processes >> type: seqaij >> rows=8, cols=8 >> total: nonzeros=64, allocated nonzeros=160 >> total number of mallocs used during MatSetValues calls =8 >> using I-node routines: found 2 nodes, limit used is 5 >> The solution to this problem is: >> Vector Object: 1 MPI processes >> type: seq >> -0.977778 >> -0.0444444 >> -0.844444 >> -0.327778 >> 3 >> 1 >> 1.5 >> 3 >> >> It is obvious that something goes wrong in the fieldsplit, I'm just >> clueless to what it is. I think that everything is setup correctly but I'm >> missing something to get the KSP to recognize my splits... >> >> Thanks for your help. >> >> Best, >> Luc >> >> On 01/28/2014 11:20 AM, Matthew Knepley wrote: >> >> On Tue, Jan 28, 2014 at 10:11 AM, Luc Berger-Vergiat < >> lb2653 at columbia.edu> wrote: >> >>> What I don't really understand is why the size of all the sub fields >>> is zero? >>> As you can see all the matrix object in my fieldsplit preconditioner >>> have total:nonzeros=0, allocated nonzeros=0. >>> >>> This seems strange since I issued the following command: >>> call DMSetDefaultSection(FSDM, FSSection, ierr) >>> >> >> That section looks like you never called PetscSectionSetUp(). >> >> Matt >> >> >>> with a the following FSSection: >>> PetscSection with 4 fields >>> field 0 with 1 components >>> Process 0: >>> ( 0) dim 0 offset 0 >>> ( 1) dim 1 offset 0 >>> ( 2) dim 0 offset 0 >>> ( 3) dim 0 offset 0 >>> ( 4) dim 1 offset 0 >>> ( 5) dim 0 offset 0 >>> ( 6) dim 0 offset 0 >>> ( 7) dim 0 offset 0 >>> ( 8) dim 0 offset 0 >>> ( 9) dim 0 offset 0 >>> ( 10) dim 0 offset 0 >>> ( 11) dim 0 offset 0 >>> ( 12) dim 0 offset 0 >>> ( 13) dim 0 offset 0 >>> ( 14) dim 0 offset 0 >>> ( 15) dim 0 offset 0 >>> field 1 with 1 components >>> Process 0: >>> ( 0) dim 1 offset 0 >>> ( 1) dim 0 offset 1 >>> ( 2) dim 1 offset 0 >>> ( 3) dim 1 offset 0 >>> ( 4) dim 0 offset 1 >>> ( 5) dim 1 offset 0 >>> ( 6) dim 0 offset 0 >>> ( 7) dim 0 offset 0 >>> ( 8) dim 0 offset 0 >>> ( 9) dim 0 offset 0 >>> ( 10) dim 0 offset 0 >>> ( 11) dim 0 offset 0 >>> ( 12) dim 0 offset 0 >>> ( 13) dim 0 offset 0 >>> ( 14) dim 0 offset 0 >>> ( 15) dim 0 offset 0 >>> field 2 with 1 components >>> Process 0: >>> ( 0) dim 0 offset 1 >>> ( 1) dim 0 offset 1 >>> ( 2) dim 0 offset 1 >>> ( 3) dim 0 offset 1 >>> ( 4) dim 0 offset 1 >>> ( 5) dim 0 offset 1 >>> ( 6) dim 1 offset 0 >>> ( 7) dim 1 offset 0 >>> ( 8) dim 1 offset 0 >>> ( 9) dim 1 offset 0 >>> ( 10) dim 1 offset 0 >>> ( 11) dim 1 offset 0 >>> ( 12) dim 0 offset 0 >>> ( 13) dim 0 offset 0 >>> ( 14) dim 0 offset 0 >>> ( 15) dim 0 offset 0 >>> field 3 with 1 components >>> Process 0: >>> ( 0) dim 0 offset 1 >>> ( 1) dim 0 offset 1 >>> ( 2) dim 0 offset 1 >>> ( 3) dim 0 offset 1 >>> ( 4) dim 0 offset 1 >>> ( 5) dim 0 offset 1 >>> ( 6) dim 0 offset 1 >>> ( 7) dim 0 offset 1 >>> ( 8) dim 0 offset 1 >>> ( 9) dim 0 offset 1 >>> ( 10) dim 0 offset 1 >>> ( 11) dim 0 offset 1 >>> ( 12) dim 1 offset 0 >>> ( 13) dim 1 offset 0 >>> ( 14) dim 1 offset 0 >>> ( 15) dim 1 offset 0 >>> >>> I thought that by using DMSetDefaultSection() I would be done setting >>> the fields and that the fieldsplit would detect that section and use it to >>> construct the splits. >>> >>> Should I use another command to tell the PC to use the DM section? >>> >>> Best, >>> Luc >>> >>> On 01/28/2014 10:25 AM, Matthew Knepley wrote: >>> >>> On Mon, Jan 27, 2014 at 1:35 PM, Luc Berger-Vergiat < >>> lb2653 at columbia.edu> wrote: >>> >>>> Thanks Matt, >>>> this indeed setting the number of fields earlier solve my issue! >>>> >>>> I have now made some progress getting my DM setup but I am having >>>> troubles setting my splitfield options. >>>> I ran my problem with the -ksp_view option to see what is going on and >>>> I guess that somehow the section that I define in my DM is not used by the >>>> preconditioner to split the fields. >>>> Here is the output of PETSc >>>> >>>> KSP Object: 1 MPI processes >>>> type: gmres >>>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt >>>> Orthogonalization with no iterative refinement >>>> GMRES: happy breakdown tolerance 1e-30 >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-08, absolute=1e-16, divergence=1e+16 >>>> left preconditioning >>>> using PRECONDITIONED norm type for convergence test >>>> PC Object: 1 MPI processes >>>> type: fieldsplit >>>> FieldSplit with MULTIPLICATIVE composition: total splits = 4 >>>> Solver info for each split is in the following KSP objects: >>>> Split number 0 Defined by IS >>>> >>> >>> There are 4 splits here and they are defined by an IS. Why do you >>> think that is not what you asked for? >>> >>> Thanks, >>> >>> Matt >>> >>> >>>> KSP Object: (fieldsplit_Field_0_) 1 MPI processes >>>> type: preonly >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>>> left preconditioning >>>> using NONE norm type for convergence test >>>> PC Object: (fieldsplit_Field_0_) 1 MPI processes >>>> type: ilu >>>> ILU: out-of-place factorization >>>> 0 levels of fill >>>> tolerance for zero pivot 2.22045e-14 >>>> using diagonal shift on blocks to prevent zero pivot >>>> matrix ordering: natural >>>> factor fill ratio given 1, needed 1 >>>> Factored matrix follows: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> package used to perform factorization: petsc >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> linear system matrix = precond matrix: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> Split number 1 Defined by IS >>>> KSP Object: (fieldsplit_Field_1_) 1 MPI processes >>>> type: preonly >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>>> left preconditioning >>>> using NONE norm type for convergence test >>>> PC Object: (fieldsplit_Field_1_) 1 MPI processes >>>> type: ilu >>>> ILU: out-of-place factorization >>>> 0 levels of fill >>>> tolerance for zero pivot 2.22045e-14 >>>> using diagonal shift on blocks to prevent zero pivot >>>> matrix ordering: natural >>>> factor fill ratio given 1, needed 1 >>>> Factored matrix follows: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> package used to perform factorization: petsc >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> linear system matrix = precond matrix: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> Split number 2 Defined by IS >>>> KSP Object: (fieldsplit_Field_2_) 1 MPI processes >>>> type: preonly >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>>> left preconditioning >>>> using NONE norm type for convergence test >>>> PC Object: (fieldsplit_Field_2_) 1 MPI processes >>>> type: ilu >>>> ILU: out-of-place factorization >>>> 0 levels of fill >>>> tolerance for zero pivot 2.22045e-14 >>>> using diagonal shift on blocks to prevent zero pivot >>>> matrix ordering: natural >>>> factor fill ratio given 1, needed 1 >>>> Factored matrix follows: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> package used to perform factorization: petsc >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> linear system matrix = precond matrix: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> Split number 3 Defined by IS >>>> KSP Object: (fieldsplit_Field_3_) 1 MPI processes >>>> type: preonly >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000 >>>> left preconditioning >>>> using NONE norm type for convergence test >>>> PC Object: (fieldsplit_Field_3_) 1 MPI processes >>>> type: ilu >>>> ILU: out-of-place factorization >>>> 0 levels of fill >>>> tolerance for zero pivot 2.22045e-14 >>>> using diagonal shift on blocks to prevent zero pivot >>>> matrix ordering: natural >>>> factor fill ratio given 1, needed 1 >>>> Factored matrix follows: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> package used to perform factorization: petsc >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> linear system matrix = precond matrix: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=0, cols=0 >>>> total: nonzeros=0, allocated nonzeros=0 >>>> total number of mallocs used during MatSetValues calls =0 >>>> not using I-node routines >>>> linear system matrix = precond matrix: >>>> Matrix Object: 1 MPI processes >>>> type: seqaij >>>> rows=16, cols=16 >>>> total: nonzeros=256, allocated nonzeros=256 >>>> total number of mallocs used during MatSetValues calls =0 >>>> using I-node routines: found 4 nodes, limit used is 5 >>>> >>>> I am also attaching part of my code which I use to generate the DM, the >>>> KSP and the PC objects. >>>> >>>> Best, >>>> Luc >>>> >>>> On 01/25/2014 10:31 AM, Matthew Knepley wrote: >>>> >>>> On Fri, Jan 24, 2014 at 5:10 PM, Luc Berger-Vergiat < >>>> lb2653 at columbia.edu> wrote: >>>> >>>>> Hi all, >>>>> I want to use PETSc as a solver for an FEM problem: modelization of >>>>> shear bands using a 4 fields mixed formulation. >>>>> >>>>> So far I am just trying to set up a two fields in a Petsc section, >>>>> assign dof too each field and then set up the section to pass it to a DM. I >>>>> am taking this approach because in general I want for fieldsplit to work >>>>> purely on the algebraic level without knowledge of boundary conditions or >>>>> geometry. >>>>> >>>>> As of now I have issues when I try to assign a point and its >>>>> associated degree of freedom to a field using: PetscSectionSetFieldDof. >>>>> Is this the correct way to associate a dof/point to a field? >>>>> >>>> >>>> You have to set the number of fields before the chart. I am updating >>>> the docs. >>>> >>>> Thanks, >>>> >>>> Matt >>>> >>>> >>>>> I attached an example code and its makefile. >>>>> >>>>> -- >>>>> Best, >>>>> Luc >>>>> >>>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>>> >>>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From kaus at uni-mainz.de Thu Jan 30 10:30:05 2014 From: kaus at uni-mainz.de (Boris Kaus) Date: Thu, 30 Jan 2014 17:30:05 +0100 Subject: [petsc-users] Galerkin multigrid coarsening Message-ID: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> Hi, While doing multigrid it is possible to explicitly set restriction and prolongation/interpolation operators in PETSC using PCMGSetRestriction and PCMGSetInterpolation. In many cases, the restriction (R) and prolongation (P) operators are simply the transpose of each other (R=P?). Yet, in certain cases, for example variable viscosity Stokes with a staggered finite difference discretization, it is advantageous if they are different (see http://arxiv.org/pdf/1308.4605.pdf). Accordding to the Wesseling textbook, Galerkin coarsening of the fine grid matrix is defined as: Acoarse = R*A*P Yet, as far as I can tell, PETSc seems to implement this as: Acoarse = R*A*R? even in the case that R is different from P?. Is there a way for PETSc to use the actually provided prolongation and restriction operators to compute the coarse grid approximation? thanks! Boris _______________________________________________________ Boris J.P. Kaus Institute of Geosciences, Geocycles Research Center & Center for Computational Sciences. University of Mainz, Mainz, Germany Office: 00-285 Tel: +49.6131.392.4527 http://www.geo-dynamics.eu _______________________________________________________ -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Thu Jan 30 10:45:31 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 30 Jan 2014 09:45:31 -0700 Subject: [petsc-users] Galerkin multigrid coarsening In-Reply-To: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> References: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> Message-ID: <8761p1h104.fsf@jedbrown.org> Boris Kaus writes: > While doing multigrid it is possible to explicitly set restriction and > prolongation/interpolation operators in PETSC using PCMGSetRestriction > and PCMGSetInterpolation. In many cases, the restriction (R) and > prolongation (P) operators are simply the transpose of each other > (R=P?). > > Yet, in certain cases, for example variable viscosity Stokes with a > staggered finite difference discretization, it is advantageous if they > are different (see http://arxiv.org/pdf/1308.4605.pdf). > > Accordding to the Wesseling textbook, Galerkin coarsening of the fine > grid matrix is defined as: > > Acoarse = R*A*P > > Yet, as far as I can tell, PETSc seems to implement this as: > > Acoarse = R*A*R? Certainly, the code just had an outdated assumption. I think I have added support for this (it does R*A*P when R!=P), but I don't have a test case readily available. Could you try branch 'jed/pcmg-galerkin-rap' (if you were using v3.4/maint) or 'next' if you've been tracking petsc-dev? -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From danyang.su at gmail.com Thu Jan 30 11:27:27 2014 From: danyang.su at gmail.com (Danyang Su) Date: Thu, 30 Jan 2014 09:27:27 -0800 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP In-Reply-To: <87ha8mi5mk.fsf@jedbrown.org> References: <52E94835.6080207@gmail.com> <52E9715E.20207@mcs.anl.gov> <52E9AEE6.90408@gmail.com> <87ha8mi5mk.fsf@jedbrown.org> Message-ID: <52EA8B7F.2070207@gmail.com> I made a second check on initialization of PETSc, and found that the initialization does not take effect. The codes are as follows. call PetscInitialize(Petsc_Null_Character,ierrcode) call MPI_Comm_rank(Petsc_Comm_World,rank,ierrcode) call MPI_Comm_size(Petsc_Comm_World,nprcs,ierrcode) The value of rank and nprcs are always 0 and 1, respectively, whatever how many processors are used in running the program. Danyang On 29/01/2014 6:08 PM, Jed Brown wrote: > Danyang Su writes: > >> Hi Karli, >> >> "--with-threadcomm --with-openmp" can work when configure PETSc with >> MPI-OpenMP. Sorry for making a mistake before. >> The program can be compiled but I got a new error while running my program. >> >> Error: Attempting to use an MPI routine before initializing MPICH >> >> This error occurs when calling MPI_SCATTERV. I have already called >> PetscInitialize, and MPI_BCAST, which is just before the calling of >> MPI_SCATTERV, can also work without throwing error. >> >> When PETSc is configured without openmp, there is no error in this section. > Are you calling this inside an omp parallel block? Are you initializing > MPI with MPI_THREAD_MULTIPLE? Do you have other threads doing something > with MPI? > > I'm afraid we'll need a reproducible test case if it still doesn't work > for you. From jed at jedbrown.org Thu Jan 30 11:30:50 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 30 Jan 2014 10:30:50 -0700 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP In-Reply-To: <52EA8B7F.2070207@gmail.com> References: <52E94835.6080207@gmail.com> <52E9715E.20207@mcs.anl.gov> <52E9AEE6.90408@gmail.com> <87ha8mi5mk.fsf@jedbrown.org> <52EA8B7F.2070207@gmail.com> Message-ID: <87zjmdfkc5.fsf@jedbrown.org> Danyang Su writes: > I made a second check on initialization of PETSc, and found that the > initialization does not take effect. The codes are as follows. > > call PetscInitialize(Petsc_Null_Character,ierrcode) > call MPI_Comm_rank(Petsc_Comm_World,rank,ierrcode) > call MPI_Comm_size(Petsc_Comm_World,nprcs,ierrcode) > > The value of rank and nprcs are always 0 and 1, respectively, whatever > how many processors are used in running the program. The most common reason for this is that you have more than one MPI implementation on your system and they are getting mixed up. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From kaus at uni-mainz.de Thu Jan 30 12:05:25 2014 From: kaus at uni-mainz.de (Kaus, Boris) Date: Thu, 30 Jan 2014 18:05:25 +0000 Subject: [petsc-users] Galerkin multigrid coarsening In-Reply-To: <8761p1h104.fsf@jedbrown.org> References: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de>, <8761p1h104.fsf@jedbrown.org> Message-ID: <8B6C986F-8672-4AE6-8834-29B0C2090C82@uni-mainz.de> Thanks Jed, I'll give it a try and let you know. Might take a bit though. Boris > On Jan 30, 2014, at 17:45, "Jed Brown" wrote: > > Boris Kaus writes: > >> While doing multigrid it is possible to explicitly set restriction and >> prolongation/interpolation operators in PETSC using PCMGSetRestriction >> and PCMGSetInterpolation. In many cases, the restriction (R) and >> prolongation (P) operators are simply the transpose of each other >> (R=P?). >> >> Yet, in certain cases, for example variable viscosity Stokes with a >> staggered finite difference discretization, it is advantageous if they >> are different (see http://arxiv.org/pdf/1308.4605.pdf). >> >> Accordding to the Wesseling textbook, Galerkin coarsening of the fine >> grid matrix is defined as: >> >> Acoarse = R*A*P >> >> Yet, as far as I can tell, PETSc seems to implement this as: >> >> Acoarse = R*A*R? > > Certainly, the code just had an outdated assumption. I think I have > added support for this (it does R*A*P when R!=P), but I don't have a > test case readily available. Could you try branch > 'jed/pcmg-galerkin-rap' (if you were using v3.4/maint) or 'next' if > you've been tracking petsc-dev? From cedric.doucet at inria.fr Thu Jan 30 12:19:02 2014 From: cedric.doucet at inria.fr (Cedric Doucet) Date: Thu, 30 Jan 2014 19:19:02 +0100 (CET) Subject: [petsc-users] Input arguments of DMPlexCreateFromDAG In-Reply-To: <1425112156.350693.1391105171175.JavaMail.root@inria.fr> Message-ID: <691198377.353049.1391105942854.JavaMail.root@inria.fr> Hello, I tried to use DMPlexCreateFromDAG function to create a DM structure from a hybrid mesh. To understand how it works, I look at ex5.c file. Unfortunately, there are some things that I do not understand. 1. Why does coneSize lists faces of cells first, then faces of vertices and finally faces of edges (in 2D)? Listing faces of vertices, then faces of edges and finally faces of cells is not simpler? 2 What does coneOrientations contain? For two counterclockwise oriented triangles sharing an edge e={v0,v1}, I understand that {v0,v1} is the right oriented edge for the second triangle (and e for the first one) but what is the meaning of value -2? I read that it is -(o+1) with o=1 but why does o equal 1 in this case? Thank you very much for your help! Best regards, C?dric Doucet -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Jan 30 12:26:36 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 30 Jan 2014 12:26:36 -0600 Subject: [petsc-users] Input arguments of DMPlexCreateFromDAG In-Reply-To: <691198377.353049.1391105942854.JavaMail.root@inria.fr> References: <1425112156.350693.1391105171175.JavaMail.root@inria.fr> <691198377.353049.1391105942854.JavaMail.root@inria.fr> Message-ID: On Thu, Jan 30, 2014 at 12:19 PM, Cedric Doucet wrote: > Hello, > I tried to use DMPlexCreateFromDAG function to create a DM structure from > a hybrid mesh. > To understand how it works, I look at ex5.c file. > Unfortunately, there are some things that I do not understand. > 1. Why does coneSize lists faces of cells first, then faces of vertices > and finally faces of edges (in 2D)? Listing faces of vertices, then faces > of edges and finally faces of cells is not simpler? > This is really about what order you number points. I wanted to support meshes with just cells and vertices, as well as those with face and edges. I also wanted to be able to convert between them. Thus it made sense to leave the cell and vertex numbers invariant under this change. I still think this is the best pragmatic alternative. > 2 What does coneOrientations contain? For two counterclockwise oriented > triangles sharing an edge e={v0,v1}, I understand that {v0,v1} is the right > oriented edge for the second triangle (and e for the first one) but what > is the meaning of value -2? I read that it is -(o+1) with o=1 but why does > o equal 1 in this case? > Right now, orientation o = means: : + means traverse in cone order - means traverse in the reverse of cone order : cone point to start iteration on if is -, then start on point -(+1) Thus -2 means start on point 1 and go in reverse order, so for an edge that would be {1, 0} which is what you want. What we should really have is identify a group element from the symmetry group of the point, and indicate inversion. However, that will be a big rewrite and needs to be motivated by applications. Matt Thank you very much for your help! > Best regards, > C?dric Doucet > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From danyang.su at gmail.com Thu Jan 30 12:59:31 2014 From: danyang.su at gmail.com (Danyang Su) Date: Thu, 30 Jan 2014 10:59:31 -0800 Subject: [petsc-users] Configuration of Hybrid MPI-OpenMP In-Reply-To: <87zjmdfkc5.fsf@jedbrown.org> References: <52E94835.6080207@gmail.com> <52E9715E.20207@mcs.anl.gov> <52E9AEE6.90408@gmail.com> <87ha8mi5mk.fsf@jedbrown.org> <52EA8B7F.2070207@gmail.com> <87zjmdfkc5.fsf@jedbrown.org> Message-ID: <52EAA113.2060601@gmail.com> On 30/01/2014 9:30 AM, Jed Brown wrote: > Danyang Su writes: > >> I made a second check on initialization of PETSc, and found that the >> initialization does not take effect. The codes are as follows. >> >> call PetscInitialize(Petsc_Null_Character,ierrcode) >> call MPI_Comm_rank(Petsc_Comm_World,rank,ierrcode) >> call MPI_Comm_size(Petsc_Comm_World,nprcs,ierrcode) >> >> The value of rank and nprcs are always 0 and 1, respectively, whatever >> how many processors are used in running the program. > The most common reason for this is that you have more than one MPI > implementation on your system and they are getting mixed up. Yes, I have MPICH2 and Microsoft HPC on the same OS. The PETSc was build using MPICH2. I will uninstall Microsoft HPC to see if it works. Thanks, Danyang From torquil at gmail.com Thu Jan 30 13:51:04 2014 From: torquil at gmail.com (=?UTF-8?B?VG9ycXVpbCBNYWNkb25hbGQgU8O4cmVuc2Vu?=) Date: Thu, 30 Jan 2014 20:51:04 +0100 Subject: [petsc-users] Galerkin multigrid coarsening In-Reply-To: <8761p1h104.fsf@jedbrown.org> References: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> <8761p1h104.fsf@jedbrown.org> Message-ID: <52EAAD28.1000607@gmail.com> On 30/01/14 17:45, Jed Brown wrote: > Boris Kaus writes: > >> While doing multigrid it is possible to explicitly set restriction and >> prolongation/interpolation operators in PETSC using PCMGSetRestriction >> and PCMGSetInterpolation. In many cases, the restriction (R) and >> prolongation (P) operators are simply the transpose of each other >> (R=P?). >> >> Yet, in certain cases, for example variable viscosity Stokes with a >> staggered finite difference discretization, it is advantageous if they >> are different (see http://arxiv.org/pdf/1308.4605.pdf). >> >> Accordding to the Wesseling textbook, Galerkin coarsening of the fine >> grid matrix is defined as: >> >> Acoarse = R*A*P >> >> Yet, as far as I can tell, PETSc seems to implement this as: >> >> Acoarse = R*A*R? > Certainly, the code just had an outdated assumption. I think I have > added support for this (it does R*A*P when R!=P), but I don't have a > test case readily available. Could you try branch > 'jed/pcmg-galerkin-rap' (if you were using v3.4/maint) or 'next' if > you've been tracking petsc-dev? This question was similar to my recent unanswered one: http://lists.mcs.anl.gov/pipermail/petsc-users/2014-January/020382.html I just tried jed/pcmg-galerkin-rap, and it seems to work fineI verified that the coarse system matrix is R*A*P, for a two-level PCMG. I'm first calling PCMGSetInterpolation() with a matrix P, and then PCMGSetInterpolation() with a matrix R. Previously R was ignored, and I got A_c = P^T*A*P With jed/pcmg-galerkin-rap, I'm getting: A_c = R*A*P So now I can experiment with using R or P^T, which is very nice! I did not have an opportunity to test what happens if I don't set any restriction, but I'm hoping it will then use P^T, as before. Best regards Torquil S?rensen From jed at jedbrown.org Thu Jan 30 15:05:20 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 30 Jan 2014 14:05:20 -0700 Subject: [petsc-users] Galerkin multigrid coarsening In-Reply-To: <52EAAD28.1000607@gmail.com> References: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> <8761p1h104.fsf@jedbrown.org> <52EAAD28.1000607@gmail.com> Message-ID: <878utxfaen.fsf@jedbrown.org> Torquil Macdonald S?rensen writes: > This question was similar to my recent unanswered one: > > http://lists.mcs.anl.gov/pipermail/petsc-users/2014-January/020382.html That's why I Cc'd you. > I just tried jed/pcmg-galerkin-rap, and it seems to work fineI verified > that the coarse system matrix is R*A*P, for a two-level PCMG. I'm first > calling PCMGSetInterpolation() with a matrix P, and then > PCMGSetInterpolation() with a matrix R. Previously R was ignored, and I got > > A_c = P^T*A*P > > With jed/pcmg-galerkin-rap, I'm getting: > > A_c = R*A*P > > So now I can experiment with using R or P^T, which is very nice! Thanks for testing. > I did not have an opportunity to test what happens if I don't set any > restriction, but I'm hoping it will then use P^T, as before. Yes, it will. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From torquil at gmail.com Thu Jan 30 15:41:07 2014 From: torquil at gmail.com (=?UTF-8?B?VG9ycXVpbCBNYWNkb25hbGQgU8O4cmVuc2Vu?=) Date: Thu, 30 Jan 2014 22:41:07 +0100 Subject: [petsc-users] Galerkin multigrid coarsening In-Reply-To: <878utxfaen.fsf@jedbrown.org> References: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> <8761p1h104.fsf@jedbrown.org> <52EAAD28.1000607@gmail.com> <878utxfaen.fsf@jedbrown.org> Message-ID: <52EAC6F3.5000204@gmail.com> On 30/01/14 22:05, Jed Brown wrote: > Torquil Macdonald S?rensen writes: >> This question was similar to my recent unanswered one: >> >> http://lists.mcs.anl.gov/pipermail/petsc-users/2014-January/020382.html > That's why I Cc'd you. > Thanks, I didn't notice that. I am actually very impressed with the helpfulness from the Petsc developers on this mailing list. - Torquil From mirzadeh at gmail.com Thu Jan 30 16:26:16 2014 From: mirzadeh at gmail.com (Mohammad Mirzadeh) Date: Thu, 30 Jan 2014 14:26:16 -0800 Subject: [petsc-users] saving log info Message-ID: Hi guys, I'd like to be able to post-process the values reported by -log_summary. Is there any programmatic way to extract the data and save it manually to a file? If not, is there any parser that go over stdout dump and extract the info? Mohammad -------------- next part -------------- An HTML attachment was scrubbed... URL: From mfadams at lbl.gov Thu Jan 30 16:36:48 2014 From: mfadams at lbl.gov (Mark Adams) Date: Thu, 30 Jan 2014 17:36:48 -0500 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> Message-ID: Try running prometheus with -out_verbose 2 and gamg with -pc_gamg_verbose 2 and send me the output. Mark On Thu, Jan 30, 2014 at 4:40 AM, Thomas Gross wrote: > Please find enclosed the output for GAMG using -mg_levels_ksp_max_it 1: > > Prometheus: > -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view > -options_left > Prometheus_Large_Log_New.txt > > Gamg: > -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 > -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_type > richardson -mg_levels_pc_type sor -mg_levels_ksp_max_it 1 > >GAMG_Rich_max_it.txt > > Best regards, > Thomas > > > > > On Jan 30, 2014, at 2:14 AM, Jed Brown wrote: > > > Thomas Gross writes: > > > >> I have now compiled Petsc 3.2.0 with Prometheus and Petsc 3.4.3 with > GAMG using the same compiler. Furthermore I am using the same MPI > implementation for both runs. Still Prometheus is considerably faster (see > attached log files). > >> > >> Prometheus: > >> -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view > -options_left > Prometheus_Large_Log_New.txt > >> > >> Gamg: > >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 > -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > > GAMG_Large_max_it_log_New.txt > >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 > -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type > richardson -mg_levels_pc_type sor > GAMG_Large_Rich_Log_New.txt > > > > Can you add -mg_levels_ksp_max_it 1 to this last configuration? I see a > > lot of time in MatSOR. We can actually speed that up slightly with some > > extra caching, which may be worthwhile. > > > > We're seeing a bit lower performance in MatMult with GAMG, perhaps > > because we are not using block formats specialized for elasticity. > > > > Mark, what else is different? What does Prometheus do differently in > > setup (not the bottleneck here, but I'm curious). > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mfadams at lbl.gov Thu Jan 30 16:38:38 2014 From: mfadams at lbl.gov (Mark Adams) Date: Thu, 30 Jan 2014 17:38:38 -0500 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> Message-ID: And is this just a simple cube problem in elasticity as it looks like from your input file name? On Thu, Jan 30, 2014 at 4:40 AM, Thomas Gross wrote: > Please find enclosed the output for GAMG using -mg_levels_ksp_max_it 1: > > Prometheus: > -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view > -options_left > Prometheus_Large_Log_New.txt > > Gamg: > -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 > -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_type > richardson -mg_levels_pc_type sor -mg_levels_ksp_max_it 1 > >GAMG_Rich_max_it.txt > > Best regards, > Thomas > > > > > On Jan 30, 2014, at 2:14 AM, Jed Brown wrote: > > > Thomas Gross writes: > > > >> I have now compiled Petsc 3.2.0 with Prometheus and Petsc 3.4.3 with > GAMG using the same compiler. Furthermore I am using the same MPI > implementation for both runs. Still Prometheus is considerably faster (see > attached log files). > >> > >> Prometheus: > >> -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view > -options_left > Prometheus_Large_Log_New.txt > >> > >> Gamg: > >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 > -log_summary -ksp_monitor -ksp_view -options_left -mg_levels_ksp_max_it 1 > > GAMG_Large_max_it_log_New.txt > >> -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 > -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type > richardson -mg_levels_pc_type sor > GAMG_Large_Rich_Log_New.txt > > > > Can you add -mg_levels_ksp_max_it 1 to this last configuration? I see a > > lot of time in MatSOR. We can actually speed that up slightly with some > > extra caching, which may be worthwhile. > > > > We're seeing a bit lower performance in MatMult with GAMG, perhaps > > because we are not using block formats specialized for elasticity. > > > > Mark, what else is different? What does Prometheus do differently in > > setup (not the bottleneck here, but I'm curious). > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Thu Jan 30 16:45:28 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 30 Jan 2014 15:45:28 -0700 Subject: [petsc-users] saving log info In-Reply-To: References: Message-ID: <87zjmddr7b.fsf@jedbrown.org> Mohammad Mirzadeh writes: > Hi guys, > > I'd like to be able to post-process the values reported by -log_summary. Is > there any programmatic way to extract the data and save it manually to a > file? > > If not, is there any parser that go over stdout dump and extract the info? I made a somewhat specialized parser and plotter here https://github.com/jedbrown/petscplot Unfortunately, I never turned it into a library or easily-reusable tool. These plots were for convergence performance with grid sequencing. https://github.com/jedbrown/petscplot/wiki/PETSc-Plot The parser is robust and easy to modify for whatever grammar you have (depending on what you're logging). -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From mirzadeh at gmail.com Thu Jan 30 16:56:37 2014 From: mirzadeh at gmail.com (Mohammad Mirzadeh) Date: Thu, 30 Jan 2014 14:56:37 -0800 Subject: [petsc-users] saving log info In-Reply-To: <87zjmddr7b.fsf@jedbrown.org> References: <87zjmddr7b.fsf@jedbrown.org> Message-ID: Thanks Jed. This looks interesting. On Thu, Jan 30, 2014 at 2:45 PM, Jed Brown wrote: > Mohammad Mirzadeh writes: > > > Hi guys, > > > > I'd like to be able to post-process the values reported by -log_summary. > Is > > there any programmatic way to extract the data and save it manually to a > > file? > > > > If not, is there any parser that go over stdout dump and extract the > info? > > I made a somewhat specialized parser and plotter here > > https://github.com/jedbrown/petscplot > > Unfortunately, I never turned it into a library or easily-reusable tool. > These plots were for convergence performance with grid sequencing. > > https://github.com/jedbrown/petscplot/wiki/PETSc-Plot > > > The parser is robust and easy to modify for whatever grammar you have > (depending on what you're logging). > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mfadams at lbl.gov Thu Jan 30 16:58:40 2014 From: mfadams at lbl.gov (Mark Adams) Date: Thu, 30 Jan 2014 17:58:40 -0500 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <87r47qi83e.fsf@jedbrown.org> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> Message-ID: > > > > We're seeing a bit lower performance in MatMult with GAMG, perhaps > because we are not using block formats specialized for elasticity. > > The block info seems to be there. > Mark, what else is different? * Prometheus seems to be coarsening slower and taking nearly twice the iterations. * GAMG is running slower and the kernels are too. This would indicate that the partitions are different (not likely) or the coarse grids are larger, or something else? > What does Prometheus do differently in > setup (not the bottleneck here, but I'm curious). > The setup is quite different. My RAP just does brute force four nested loops with a lot of unrolling. My graph setup stuff is more highly optimized in Prometheus in some ways. I would think GAMG is doing more work on coarse grids, but it seems to have fewer of them. The verbose output should shed some light on this. These two runs do about the same number of flops and Prometheus is running a little faster flop rate and is solving a little faster. The GAMG setup is a lot slower and that has a small effect on the total solve time. SOR is two iterations is twice as expensive and twice as powerful, roughly. So GAMG is just running slower. Prometheus does repartition coarse grids. Perhaps this is a poor network and/or the initial partitioning is poor so the coarse grid repartitioning is a big help. -------------- next part -------------- An HTML attachment was scrubbed... URL: From mfadams at lbl.gov Thu Jan 30 16:59:58 2014 From: mfadams at lbl.gov (Mark Adams) Date: Thu, 30 Jan 2014 17:59:58 -0500 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> Message-ID: Also try running with -pc_gamg_repartition true -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Thu Jan 30 17:07:56 2014 From: jed at jedbrown.org (Jed Brown) Date: Thu, 30 Jan 2014 16:07:56 -0700 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> Message-ID: <87wqhhdq5v.fsf@jedbrown.org> Mark Adams writes: >> We're seeing a bit lower performance in MatMult with GAMG, perhaps >> because we are not using block formats specialized for elasticity. >> >> > The block info seems to be there. I meant that GAMG isn't using BAIJ, but Prometheus is. That affects kernel efficiency. > SOR is two iterations is twice as expensive and twice as powerful, roughly. It should be less than twice as expensive because the zero initial guess case is optimized. If we also optimize triangular reuse in the subsequent residual evaluation, it should be about the same cost. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From bsmith at mcs.anl.gov Thu Jan 30 17:56:30 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 30 Jan 2014 17:56:30 -0600 Subject: [petsc-users] saving log info In-Reply-To: References: Message-ID: <75B2A803-AB4A-436D-B7F9-7293AAB5AF66@mcs.anl.gov> master now has a viewer that dumps the raw data in Python, then you can write python scripts to process it any way you want. -log_view ascii:filename:ascii_info_detail sample python script in bin/pythonscripts/petsclogformat.py I personally think that parsing the output of -log_summary (which has already been formatted) is a silly wrong headed approach. Barry On Jan 30, 2014, at 4:26 PM, Mohammad Mirzadeh wrote: > Hi guys, > > I'd like to be able to post-process the values reported by -log_summary. Is there any programmatic way to extract the data and save it manually to a file? > > If not, is there any parser that go over stdout dump and extract the info? > > Mohammad From mfadams at lbl.gov Thu Jan 30 19:29:07 2014 From: mfadams at lbl.gov (Mark Adams) Date: Thu, 30 Jan 2014 20:29:07 -0500 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: <87wqhhdq5v.fsf@jedbrown.org> References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> <87wqhhdq5v.fsf@jedbrown.org> Message-ID: > > > > I meant that GAMG isn't using BAIJ, but Prometheus is. That affects > kernel efficiency. > > Ah yes, that must be it. -------------- next part -------------- An HTML attachment was scrubbed... URL: From danyang.su at gmail.com Thu Jan 30 20:50:47 2014 From: danyang.su at gmail.com (Danyang Su) Date: Thu, 30 Jan 2014 18:50:47 -0800 Subject: [petsc-users] How can PETSc configure with MSMPI Message-ID: <52EB0F87.2040208@gmail.com> Hi All, When configure petsc with msmpi ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco mm --with-openmp --with-mpi-include="/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" I get the following error --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] and --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc'] did not work Thanks, Danyang From bsmith at mcs.anl.gov Thu Jan 30 21:40:21 2014 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 30 Jan 2014 21:40:21 -0600 Subject: [petsc-users] How can PETSc configure with MSMPI In-Reply-To: <52EB0F87.2040208@gmail.com> References: <52EB0F87.2040208@gmail.com> Message-ID: <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> We need configure.log On Jan 30, 2014, at 8:50 PM, Danyang Su wrote: > Hi All, > > When configure petsc with msmpi > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco > mm --with-openmp --with-mpi-include="/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog > ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" > > I get the following error > > --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] and > --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc'] did not work > > Thanks, > > Danyang From knepley at gmail.com Thu Jan 30 23:08:32 2014 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 30 Jan 2014 23:08:32 -0600 Subject: [petsc-users] saving log info In-Reply-To: <75B2A803-AB4A-436D-B7F9-7293AAB5AF66@mcs.anl.gov> References: <75B2A803-AB4A-436D-B7F9-7293AAB5AF66@mcs.anl.gov> Message-ID: On Thu, Jan 30, 2014 at 5:56 PM, Barry Smith wrote: > > master now has a viewer that dumps the raw data in Python, then you can > write python scripts to process it any way you want. -log_view > ascii:filename:ascii_info_detail sample python script in > bin/pythonscripts/petsclogformat.py > > I personally think that parsing the output of -log_summary (which has > already been formatted) is a silly wrong headed approach. Cool, I will look at switching src/benchmarks/benchmarkExample.py to this. Matt > > Barry > > On Jan 30, 2014, at 4:26 PM, Mohammad Mirzadeh wrote: > > > Hi guys, > > > > I'd like to be able to post-process the values reported by -log_summary. > Is there any programmatic way to extract the data and save it manually to a > file? > > > > If not, is there any parser that go over stdout dump and extract the > info? > > > > Mohammad > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From danyang.su at gmail.com Fri Jan 31 02:05:10 2014 From: danyang.su at gmail.com (Danyang Su) Date: Fri, 31 Jan 2014 00:05:10 -0800 Subject: [petsc-users] How can PETSc configure with MSMPI In-Reply-To: <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> References: <52EB0F87.2040208@gmail.com> <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> Message-ID: <52EB5936.3010306@gmail.com> Hi Barry, The configure.log has been attached. I can configure with MPICH2 before. There are three MPI implementations (MPICH2, Intel MPI and MSMPI) in my computer, the intel mpi distribution comes along with the installation of Intel Parallel Studio. The MPICH2 and MSMPI is installed separately. Now I have uninstalled MPICH2 and there is only MSMPI (with sdk) and Intel MPI distribution. The system is WIN7 X64 Pro. Thanks, Danyang On 30/01/2014 7:40 PM, Barry Smith wrote: > We need configure.log > > On Jan 30, 2014, at 8:50 PM, Danyang Su wrote: > >> Hi All, >> >> When configure petsc with msmpi >> >> ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco >> mm --with-openmp --with-mpi-include="/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog >> ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" >> >> I get the following error >> >> --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] and >> --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc'] did not work >> >> Thanks, >> >> Danyang -------------- next part -------------- Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Thu Jan 30 17:32:07 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --download-f-blas-lapack --with-threadcomm --with-openmp --with-mpi-include="/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" --useThreads=0 Working directory: /cygdrive/c/cygwin/packages/petsc-dev Machine platform: ('CYGWIN_NT-6.1-WOW64', 'nwmop', '1.7.22(0.268/5/3)', '2013-07-22 17:06', 'i686', '') Python version: 2.7.3 (default, Dec 18 2012, 13:50:09) [GCC 4.5.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py:823) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:823) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gdb...not found Checking for program /cygdrive/c/Windows/system32/gdb...not found Checking for program /cygdrive/c/Windows/gdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gdb...not found Checking for program /cygdrive/c/MinGW/bin/gdb...found Defined make macro "GDB" to "/cygdrive/c/MinGW/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dbx...not found Checking for program /cygdrive/c/Windows/system32/dbx...not found Checking for program /cygdrive/c/Windows/dbx...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dbx...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dbx...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dbx...not found Checking for program /cygdrive/c/MinGW/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dbx...not found Checking for program /home/dsu/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/xdb...not found Checking for program /cygdrive/c/Windows/system32/xdb...not found Checking for program /cygdrive/c/Windows/xdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/xdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/xdb...not found Checking for program /cygdrive/c/MinGW/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/xdb...not found Checking for program /home/dsu/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dsymutil...not found Checking for program /cygdrive/c/Windows/system32/dsymutil...not found Checking for program /cygdrive/c/Windows/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dsymutil...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dsymutil...not found Checking for program /cygdrive/c/MinGW/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dsymutil...not found Checking for program /home/dsu/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/git...not found Checking for program /cygdrive/c/Windows/system32/git...not found Checking for program /cygdrive/c/Windows/git...not found Checking for program /cygdrive/c/Windows/System32/Wbem/git...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/git...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/git...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/git...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/git...not found Checking for program /cygdrive/c/MinGW/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/git...not found Checking for program /home/dsu/git...not found ================================================================================ TEST configureMercurial from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.5.2) ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/cvs...not found Checking for program /cygdrive/c/Windows/system32/cvs...not found Checking for program /cygdrive/c/Windows/cvs...not found Checking for program /cygdrive/c/Windows/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/cvs...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/cvs...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/cvs...not found Checking for program /cygdrive/c/MinGW/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/cvs...not found Checking for program /home/dsu/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/svn...not found Checking for program /cygdrive/c/Windows/system32/svn...not found Checking for program /cygdrive/c/Windows/svn...not found Checking for program /cygdrive/c/Windows/System32/Wbem/svn...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/svn...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/svn...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/svn...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/svn...not found Checking for program /cygdrive/c/MinGW/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.8.3 ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/autoreconf...not found Checking for program /cygdrive/c/Windows/system32/autoreconf...not found Checking for program /cygdrive/c/Windows/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/Wbem/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/autoreconf...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/autoreconf...not found Checking for program /cygdrive/c/MinGW/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/autoreconf...not found Checking for program /home/dsu/autoreconf...not found ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-Z58YN1 All intermediate test results are stored in /tmp/petsc-Z58YN1/config.programs Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-Z58YN1/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-Z58YN1/config.programs/diff1" "/tmp/petsc-Z58YN1/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/dsu/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jan, 30, 2014" #define PETSC_VERSION_GIT "v3.4.3-2414-g135c7cd" #define PETSC_VERSION_DATE_GIT "2014-01-29 17:41:55 -0700" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/cygdrive/c/cygwin/packages/petsc-dev" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-mswin-c-debug"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-debug/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1500) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1500) **** printenv **** BIN_ROOT=C:\Program Files (x86)\Intel\Composer XE 2013\bin\ LIB=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\lib\x64;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\lib\intel64;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64; VS100COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\ COMPUTERNAME=NWMOP SCRIPT_NAME=compilervars_arch.bat ADVISOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Advisor XE 2013\.\ !C:=C:\Program Files (x86)\Intel\Composer XE 2013 WIN_TITLE_ARCH=Intel(R) 64 PRODUCT_NAME=Intel Composer XE 2013 CCP_INC=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\Include\ INFOPATH=/usr/local/info:/usr/share/info:/usr/info: SHELL=/bin/bash CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files USERDOMAIN=nwmop FrameworkVersion64=v4.0.30319 MANPATH=/usr/local/man:/usr/share/man:/usr/man: FrameworkDir=C:\Windows\Microsoft.NET\Framework64 CCP_LIB64=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\Lib\amd64\ ARCH_PATH_MPI=em64t KMP_AFFINITY=verbose,granularity=thread,compact COMSPEC=C:\Windows\system32\cmd.exe WIN_TITLE_VS=Visual Studio 2010 ARCH_PATH=intel64 TARGET_ARCH=intel64 MOZ_PLUGIN_PATH=C:\Program Files (x86)\PDFlite\ HOMEDRIVE=C: MKLROOT=C:\Program Files (x86)\Intel\Composer XE 2013\mkl FrameworkVersion=v4.0.30319 SYSTEMDRIVE=C: HOSTNAME=nwmop PETSC_ARCH=arch-mswin-c-debug PROCESSOR_LEVEL=6 OS=Windows_NT C_INCLUDE_PATH=C:\MinGW\include PRODUCT_NAME_FULL=Intel(R) Composer XE 2013 Update 5 (package 198) TARGET_VS=vs2010 INTEL_DEV_REDIST=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\ IFORT_COMPILER14=C:\Program Files (x86)\Intel\Composer XE 2013 SP1\ CommandPromptType=Native USER=dsu IFORT_COMPILER13=C:\Program Files (x86)\Intel\Composer XE 2013\ SYSTEMROOT=C:\Windows PS1=\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ tmp=C:\Users\dsu\AppData\Local\Temp TEMP=/tmp SHLVL=1 VISUALSVN_SERVER=C:\Program Files (x86)\VisualSVN Server\ PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev HOMEPATH=\Users\dsu WindowsSdkDir=C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\ ROOT=C:\Program Files (x86)\Intel\Composer XE 2013 LOGONSERVER=\\NWMOP CCP_JOBTEMPLATE=Default C_TARGET_ARCH=intel64 MSVS_VAR_SCRIPT="C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\..\..\VC\vcvarsall.bat" PRINTER=HP Color LaserJet Pro MFP M177 PCLmS INSPECTOR_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ SESSIONNAME=Console INCLUDE=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\include;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\include; PATH_PHAST=C:\Program Files (x86)\USGS\phast-2.4.1-7430\\bin APPDATA=C:\Users\dsu\AppData\Roaming OMP_NUM_THREADS=6 VBOX_INSTALL_PATH=C:\Program Files\Oracle\VirtualBox\ CCP_HOME=C:\Program Files\Microsoft HPC Pack 2008 R2\ TMP=/tmp PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ INTEL_LICENSE_FILE=C:\Program Files (x86)\Common Files\Intel\Licenses COMMONPROGRAMFILES=C:\Program Files (x86)\Common Files HOME=/home/dsu MIC_LD_LIBRARY_PATH=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\compiler\lib\mic LANG=en_US.UTF-8 LIBRARY_PATH=C:\MinGW\lib ProgramData=C:\ProgramData PROCESSOR_ARCHITECTURE=x86 ALLUSERSPROFILE=C:\ProgramData _=./configure BUNDLE_NAME=Intel(R) Parallel Studio XE 2013 ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=dsu FrameworkDIR64=C:\Windows\Microsoft.NET\Framework64 PROMPT=$P$G PETSC_DIR2=/cygdrive/c/cygwin/packages/petsc-3.4.3 PETSC_ARCH3=arch-mswin-c-optimized INSPECTOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC CommonProgramW6432=C:\Program Files\Common Files WINDIR=C:\Windows Framework35Version=v3.5 temp=C:\Users\dsu\AppData\Local\Temp Platform=X64 NUMBER_OF_PROCESSORS=12 CCP_LIB32=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\Lib\i386\ PROCESSOR_ARCHITEW6432=AMD64 WIN_TITLE=Intel Composer XE 2013 Intel(R) 64 Visual Studio 2010 TARGET_VS_ARCH=amd64 MSMPI_INC=C:\Program Files\Microsoft HPC Pack 2008 R2\Inc\ PUBLIC=C:\Users\Public USERPROFILE=C:\Users\dsu LIBPATH=C:\Windows\Microsoft.NET\Framework64\v4.0.30319;C:\Windows\Microsoft.NET\Framework64\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64; PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 45 Stepping 7, GenuineIntel PROGRAMFILES=C:\Program Files (x86) PROCESSOR_REVISION=2d07 PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32:/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/TEC100/BIN:/cygdrive/c/Program Files (x86)/CMake 2.8/bin:/cygdrive/c/Program Files/doxygen/bin:/cygdrive/c/Program Files (x86)/Graphviz 2.28/bin:/cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin:/cygdrive/c/MinGW/bin:/cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/VisualSVN/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt TERM=cygwin TZ=America/Vancouver CCP_SDK=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\ VSINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\ VTUNE_AMPLIFIER_XE_2013_DIR=C:\Program Files (x86)\Intel\VTune Amplifier XE 2013\ LOCALAPPDATA=C:\Users\dsu\AppData\Local MSMPI_LIB64=C:\Program Files\Microsoft HPC Pack 2008 R2\Lib\amd64\ TEC100HOME=C:\Program Files\TEC100 FP_NO_HOST_CHECK=NO OLDPWD=/home/dsu PWD=/cygdrive/c/cygwin/packages/petsc-dev MSMPI_LIB32=C:\Program Files\Microsoft HPC Pack 2008 R2\Lib\i386\ VCINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1507) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1472) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1491) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1491) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:400) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:400) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:410) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:410) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:526) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-Z58YN1/config.setCompilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:561) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:561) Locate a functional C preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.SET\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:595) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:595) Locate a functional CUDA compiler Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:633) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:633) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:736) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:736) Locate a functional Cxx compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXX" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:774) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:774) Locate a functional Cxx preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXXCPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\conffix.h" extern "C" { } #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.SET\\conftest.cc" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\cstdlib" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" namespace vc_attributes { #line 55 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum YesNoMaybe { No = 0x0fff0001, Maybe = 0x0fff0010, Yes = 0x0fff0100 }; typedef enum YesNoMaybe YesNoMaybe; enum AccessType { NoAccess = 0, Read = 1, Write = 2, ReadWrite = 3 }; typedef enum AccessType AccessType; [repeatable] [source_annotation_attribute( Parameter )] struct PreAttribute { PreAttribute(); #line 85 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostAttribute { PostAttribute(); #line 116 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( Parameter )] struct FormatStringAttribute { FormatStringAttribute(); #line 147 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [repeatable] [source_annotation_attribute( ReturnValue )] struct InvalidCheckAttribute { InvalidCheckAttribute(); #line 159 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" long Value; }; [source_annotation_attribute( Method )] struct SuccessAttribute { SuccessAttribute(); #line 169 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreBoundAttribute { PreBoundAttribute(); #line 180 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostBoundAttribute { PostBoundAttribute(); #line 190 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreRangeAttribute { PreRangeAttribute(); #line 200 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostRangeAttribute { PostRangeAttribute(); #line 212 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" }; #line 222 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef ::vc_attributes::YesNoMaybe SA_YesNoMaybe; const ::vc_attributes::YesNoMaybe SA_Yes = ::vc_attributes::Yes; const ::vc_attributes::YesNoMaybe SA_No = ::vc_attributes::No; const ::vc_attributes::YesNoMaybe SA_Maybe = ::vc_attributes::Maybe; typedef ::vc_attributes::AccessType SA_AccessType; const ::vc_attributes::AccessType SA_NoAccess = ::vc_attributes::NoAccess; const ::vc_attributes::AccessType SA_Read = ::vc_attributes::Read; const ::vc_attributes::AccessType SA_Write = ::vc_attributes::Write; const ::vc_attributes::AccessType SA_ReadWrite = ::vc_attributes::ReadWrite; typedef ::vc_attributes::PreAttribute SA_Pre; typedef ::vc_attributes::PostAttribute SA_Post; typedef ::vc_attributes::FormatStringAttribute SA_FormatString; typedef ::vc_attributes::InvalidCheckAttribute SA_InvalidCheck; typedef ::vc_attributes::SuccessAttribute SA_Success; typedef ::vc_attributes::PreBoundAttribute SA_PreBound; typedef ::vc_attributes::PostBoundAttribute SA_PostBound; typedef ::vc_attributes::PreRangeAttribute SA_PreRange; typedef ::vc_attributes::PostRangeAttribute SA_PostRange; #line 266 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:883) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:883) Locate a functional Fortran compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "FC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:902) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Make sure fortran comment "!" works Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:965) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:965) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -PIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting C linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -fPIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting C linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected C compiler flag -fPIC because linker cannot handle it Trying C compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -KPIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting C linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Trying C compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -qpic /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting C linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected C compiler flag -qpic because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -PIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting Cxx linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -fPIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting Cxx linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected Cxx compiler flag -fPIC because linker cannot handle it Trying Cxx compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -KPIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting Cxx linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Trying Cxx compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -qpic /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting Cxx linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected Cxx compiler flag -qpic because linker cannot handle it Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -PIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/PIC' Rejecting FC linker flag -PIC due to ifort: command line warning #10006: ignoring unknown option '/PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -fPIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejecting FC linker flag -fPIC due to ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejected FC compiler flag -fPIC because linker cannot handle it Trying FC compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -KPIC /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejecting FC linker flag -KPIC due to ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Trying FC compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -qpic /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/qpic' Rejecting FC linker flag -qpic due to ifort: command line warning #10006: ignoring unknown option '/qpic' Rejected FC compiler flag -qpic because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- c Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/tmp/petsc-Z58YN1/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/tmp/petsc-Z58YN1/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar cr /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/tmp/petsc-Z58YN1/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/tmp/petsc-Z58YN1/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar -X64 cr /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar -X64 cr /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar -X64 cr /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a -P512" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib -a -P512 /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 25600 Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a /tmp/petsc-Z58YN1/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-Z58YN1/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/tmp/petsc-Z58YN1/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/tmp/petsc-Z58YN1/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "-a" Defined make macro "AR_LIB_SUFFIX" to "lib" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1208) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1208) Check that the linker can produce shared libraries Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -shared /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/libconftest.so /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-dynamic'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -dynamic /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-dynamic' Rejecting C linker flag -dynamic due to cl : Command line warning D9002 : ignoring unknown option '-dynamic' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/libconftest.so /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-qmkshrobj'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -qmkshrobj /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Rejecting C linker flag -qmkshrobj due to cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/libconftest.so /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -shared /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/libconftest.dll /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib using flags [] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-Z58YN1/config.setCompilers/libconftest.lib /tmp/petsc-Z58YN1/config.setCompilers/conftest.o ; /usr/bin/true /tmp/petsc-Z58YN1/config.setCompilers/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/tmp/petsc-Z58YN1/config.setCompilers -lconftest Using shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib with flags [] and library extension lib Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1286) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1286) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying C linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-rpath, Trying C linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting C linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected C linker flag -R Trying C linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting C linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected C linker flag -rpath Trying C linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-R, Popping language C Pushing language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying Cxx linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-rpath, Trying Cxx linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting Cxx linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected Cxx linker flag -R Trying Cxx linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting Cxx linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected Cxx linker flag -rpath Trying Cxx linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-R, Popping language Cxx Pushing language FC Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying FC linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-rpath, Trying FC linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting FC linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejected FC linker flag -R Trying FC linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 40192 stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting FC linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected FC linker flag -rpath Trying FC linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-R, Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1370) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1370) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-Z58YN1/config.headers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Dynamic loading disabled since dlfcn.h was missing ================================================================================ TEST output from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1416) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Output module data as defines and substitutions Substituting "CC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) ================================================================================ TEST configureSerializedFunctions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -MT Trying C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -wd4996 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Z7 Popping language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -MT Trying Cxx compiler flag -GR Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -GR Trying Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Z7 Trying Cxx compiler flag -Zm200 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Zm200 Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nIntel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Z7 Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-Z58YN1/config.compilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static __inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static __inline Popping language C Defined "C_STATIC_INLINE" to "static __inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ================================================================================ TEST checkCLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -v -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' Popping language C compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Libraries needed to link C code with another linker: [] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 -MMD -MP /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 -MMD /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD Trying C compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 -xMMD /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 -qmakedep=gcc /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 -MD /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -MD because no dependency file (/tmp/petsc-Z58YN1/config.setCompilers/conftest.d) was generated Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD -MP /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD Trying Cxx compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -xMMD /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -qmakedep=gcc /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MD /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected Cxx compiler flag -MD because no dependency file (/tmp/petsc-Z58YN1/config.setCompilers/conftest.d) was generated Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 -MMD -MP /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 -MMD /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 -xMMD /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xMMD' Successful compile: Source: program main end Rejecting compiler flag -xMMD due to ifort: command line warning #10006: ignoring unknown option '/xMMD' Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 -qmakedep=gcc /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Successful compile: Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 -MD /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10121: overriding '/MT' with '/MD' Successful compile: Source: program main end Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-Z58YN1/config.setCompilers/conftest.d) was generated Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -+ /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -+ due to nonzero status from link Rejecting compiler flag -+ due to cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -x cxx -tlocal /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx Possible ERROR while running compiler: exit code 32512 stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxxSource: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -x cxx -tlocal due to nonzero status from link Rejecting compiler flag -x cxx -tlocal due to Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -Kc++ /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -Kc++ due to nonzero status from link Rejecting compiler flag -Kc++ due to cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag -TP Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -v -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg LINK compilers: Unknown arg LINK compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg found compilers: Unknown arg found compilers: Checking arg or compilers: Unknown arg or compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg built compilers: Unknown arg built compilers: Checking arg by compilers: Unknown arg by compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg last compilers: Unknown arg last compilers: Checking arg incremental compilers: Unknown arg incremental compilers: Checking arg link; compilers: Unknown arg link; compilers: Checking arg performing compilers: Unknown arg performing compilers: Checking arg full compilers: Unknown arg full compilers: Checking arg link compilers: Unknown arg link compilers: Libraries needed to link Cxx code with another linker: [] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.o /tmp/petsc-Z58YN1/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type unchanged with code void d1chk(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.o /tmp/petsc-Z58YN1/config.compilers/confc.o stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type caps with code void D1CHK(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void D1CHK(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.o /tmp/petsc-Z58YN1/config.compilers/confc.o Popping language FC compilers: Fortran name mangling is caps Defined "HAVE_FORTRAN_CAPS" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-Z58YN1/config.compilers/conftest.o /tmp/petsc-Z58YN1/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -cpp /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -cpp due to nonzero status from link Rejecting compiler flag -cpp due to ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -xpp=cpp /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -xpp=cpp due to nonzero status from link Rejecting compiler flag -xpp=cpp due to ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -F /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line error: option '/F' is ambiguous Possible ERROR while running compiler: exit code 256 stdout: ifort: command line error: option '/F' is ambiguousSource: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -F due to nonzero status from link Rejecting compiler flag -F due to ifort: command line error: option '/F' is ambiguous PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -Cpp /tmp/petsc-Z58YN1/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -Cpp due to nonzero status from link Rejecting compiler flag -Cpp due to ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag -fpp Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp -DTesting /tmp/petsc-Z58YN1/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -V stdout: ifort: command line error: no files specified; for help type "ifort /help" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -v -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/v' C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mGLOB_microsoft_version=1600 "-mGLOB_options_string=-v -MT -Z7 -fpp -nologo -FeC:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 -mP3OPT_defaultlibs_omit=FALSE -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF -mP3OPT_defaultlibs_f90_port -mP1OPT_check_stack -mP3OPT_emit_line_numbers -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 -mDEBUG_no_pdb=TRUE -mP3OPT_inline_alloca -mGLOB_routine_pointer_size_64 -mGLOB_split_functions=0 -mIPOPT_activate -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d92 -mCG_bnl_movbe=T -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=0 -mP2OPT_offload_unique_var_string=12096124142 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=C:\cygwin\tmp\12096slis4 -mIPOPT_mo_global_data "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe" "-debug" "-pdb:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.pdb" "-subsystem:console" "-nologo" "C:\cygwin\tmp\conftest.obj"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_12096.obj -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=C:\cygwin\tmp\12096tempfile2 -mGLOB_os_target=GLOB_OS_TARGET_WINNT -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_12096.obj -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true C:\cygwin\tmp\conftest.obj -mIPOPT_object_files=T -mIPOPT_assembly_files=C:\cygwin\tmp\12096alis3 link -out:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe -debug -pdb:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.pdb -subsystem:console -nologo C:\cygwin\tmp\conftest.obj Popping language FC compilers: Checking arg ifort: compilers: Unknown arg ifort: compilers: Checking arg command compilers: Unknown arg command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg #10006: compilers: Unknown arg #10006: compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Unknown arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Checking arg -mP1OPT_version=13.1-intel64 compilers: Unknown arg -mP1OPT_version=13.1-intel64 compilers: Checking arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Unknown arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mGLOB_microsoft_version=1600 compilers: Unknown arg -mGLOB_microsoft_version=1600 compilers: Checking arg "-mGLOB_options_string=-v compilers: Unknown arg "-mGLOB_options_string=-v compilers: Checking arg -MT compilers: Unknown arg -MT compilers: Checking arg -Z7 compilers: Unknown arg -Z7 compilers: Checking arg -fpp compilers: Unknown arg -fpp compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg -FeC:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -FeC:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Handling HPUX list of directories: \PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Checking arg -mP3OPT_defaultlibs_omit=FALSE compilers: Unknown arg -mP3OPT_defaultlibs_omit=FALSE compilers: Checking arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Unknown arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Checking arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Unknown arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Checking arg -mP3OPT_defaultlibs_f90_port compilers: Unknown arg -mP3OPT_defaultlibs_f90_port compilers: Checking arg -mP1OPT_check_stack compilers: Unknown arg -mP1OPT_check_stack compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Checking arg -mDEBUG_no_pdb=TRUE compilers: Unknown arg -mDEBUG_no_pdb=TRUE compilers: Checking arg -mP3OPT_inline_alloca compilers: Unknown arg -mP3OPT_inline_alloca compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_split_functions=0 compilers: Unknown arg -mGLOB_split_functions=0 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d92 compilers: Unknown arg -mGLOB_product_id_code=0x22006d92 compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=0 compilers: Unknown arg -mGLOB_offload_mode=0 compilers: Checking arg -mP2OPT_offload_unique_var_string=12096124142 compilers: Unknown arg -mP2OPT_offload_unique_var_string=12096124142 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Unknown arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=C:\cygwin\tmp\12096slis4 compilers: Unknown arg -mIPOPT_source_files_list=C:\cygwin\tmp\12096slis4 compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe compilers: Checking arg "-debug" compilers: Unknown arg -debug compilers: Checking arg "-pdb:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.pdb" compilers: Unknown arg -pdb:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg "-subsystem:console" compilers: Unknown arg -subsystem:console compilers: Checking arg "-nologo" compilers: Unknown arg -nologo compilers: Checking arg "C:\cygwin\tmp\conftest.obj"" compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_12096.obj compilers: Unknown arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_12096.obj compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\12096tempfile2 compilers: Unknown arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\12096tempfile2 compilers: Checking arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Unknown arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Checking arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Unknown arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Checking arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_12096.obj compilers: Unknown arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_12096.obj compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=C:\cygwin\tmp\12096alis3 compilers: Unknown arg -mIPOPT_assembly_files=C:\cygwin\tmp\12096alis3 compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg -out:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg -out:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -debug compilers: Unknown arg -debug compilers: Checking arg -pdb:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.pdb compilers: Unknown arg -pdb:C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg -subsystem:console compilers: Unknown arg -subsystem:console compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Libraries needed to link Fortran code with the C linker: ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.setCompilers/conftest.exe Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void foo(void){D1CHK();} Popping language Cxx Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void D1CHK(void){return;} Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.o /tmp/petsc-Z58YN1/config.compilers/cxxobj.o /tmp/petsc-Z58YN1/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Cygwin detected: ignoring HAVE_F90_2PTR_ARG test ================================================================================ TEST checkFortranModuleInclude from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.compilers/conftest.exe -I/tmp/petsc-Z58YN1/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.o /tmp/petsc-Z58YN1/config.compilers/configtest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -module /tmp/petsc-Z58YN1/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Possible ERROR while running compiler: exit code 32512 Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.compilers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -module:/tmp/petsc-Z58YN1/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1367) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1367) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.headers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/config.compilers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.headers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.headers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.o Executing: /tmp/petsc-Z58YN1/config.headers/conftest.exe Executing: /tmp/petsc-Z58YN1/config.headers/conftest.exe Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 5 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" ================================================================================ TEST checkSysWait from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.headers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } ================================================================================ TEST checkTime from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.headers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } ================================================================================ TEST checkMath from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\math.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MATH_H" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.headers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.headers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _USE_MATH_DEFINES 1 #include int main() { double pi = M_PI; if (pi); ; return 0; } Defined "_USE_MATH_DEFINES" to "1" Activated Windows math #defines, like M_PI ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 81 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\malloc.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\Direct.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DIRECT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 89 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #pragma once #line 25 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #pragma once #line 49 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 61 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(push) #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(disable:4001) #line 24 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma once #line 181 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 194 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 195 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 199 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 207 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 208 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 216 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 217 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 224 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 226 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 228 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 230 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 232 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 235 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 236 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 245 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 249 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 253 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 257 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 261 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 265 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 267 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(pop) #line 274 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 275 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 277 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma once #line 29 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 100 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 104 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 108 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 112 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 116 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 122 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 127 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 128 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4116) #line 135 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 136 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 137 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4514) #pragma warning(disable:4103) #line 144 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(push) #line 147 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4001) #pragma warning(disable:4201) #pragma warning(disable:4214) #line 151 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\excpt.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\dos.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DOS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #pragma once #line 17 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 35 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 36 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 37 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 88 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 103 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 145 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\setjmp.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\limits.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\fcntl.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 117 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\io.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 125 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdint.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\float.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\search.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.headers/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.headers -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.c(4) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_SIZE, using default 32768 Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_LINESIZE, using default 32 Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE5535~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_ASSOC, using default 2 Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-Z58YN1/config.functions Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Executing: /tmp/petsc-Z58YN1/config.functions/conftest.exe Executing: /tmp/petsc-Z58YN1/config.functions/conftest.exe ================================================================================ TEST checkSysinfo from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkVPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_VPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-z58yn1\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVFPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_VFPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-z58yn1\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVSNPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE__VSNPRINTF" to "1" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.functions/conftest.cc stdout: conftest.cc c:\cygwin\tmp\petsc-z58yn1\config.functions\conftest.cc(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; _vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx ================================================================================ TEST checkNanosleep from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union type Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union typeSource: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Compile failed inside link ================================================================================ TEST checkSignalHandlerType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.functions/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all types Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all typesSource: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-z58yn1\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-z58yn1\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-z58yn1\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-z58yn1\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; __va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkClassify from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [rand getdomainname _sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [rand] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_RAND" to "1" Checking for functions [getdomainname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE__SLEEP" to "1" Checking for functions [snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [realpath] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [bzero _getcwd getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [bzero] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE__GETCWD" to "1" Checking for functions [getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [uname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE__LSEEK" to "1" Checking for functions [sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [_access lseek usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE__ACCESS" to "1" Checking for functions [lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LSEEK" to "1" Checking for functions [usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [_intel_fast_memset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlclose] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [clock get_nprocs access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_CLOCK" to "1" Checking for functions [get_nprocs] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [_snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE__SNPRINTF" to "1" Checking for functions [dlerror] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externalsChecking for functions [fork getpagesize sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [fork] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getpagesize] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [memalign] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_GETCWD" to "1" Checking for functions [gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externalsChecking for functions [gethostbyname gettimeofday readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [gethostbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gettimeofday] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigaction] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [dlopen drand48 socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [dlopen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [drand48] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_MEMMOVE" to "1" Checking for functions [signal] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_SIGNAL" to "1" Checking for functions [popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [getrusage] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [times] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_TIME" to "1" Checking for functions [sysctlbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Defined "HAVE_STRICMP" to "1" ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFeatureTestMacros from PETSc.utilities.featureTestMacros(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from PETSc.utilities.featureTestMacros(config/PETSc/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.functions -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST check_siginfo_t from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-Z58YN1/config.types Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found ================================================================================ TEST check__int64 from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } Typedefed "int" to "mode_t" Checking for type: off_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } Typedefed "int" to "int32_t" ================================================================================ TEST checkPID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } Typedefed "int" to "pid_t" ================================================================================ TEST checkUID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.types\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.TYP\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.TYP\\conftest.c" Defined "uid_t" to "int" Defined "gid_t" to "int" ================================================================================ TEST checkSignal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ================================================================================ TEST checkCxxComplex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.types -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/config.types/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-Z58YN1/config.types/conftest.o Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.compilers -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:150) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:150) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.types -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.types/conftest.F stdout: C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.F(3): warning #7319: This argument's data type is incompatible with this intrinsic procedure; procedure assumed EXTERNAL. [DREAL] d = dreal(3.0) ----------------^ Successful compile: Source: program main double precision d d = dreal(3.0) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:158) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:158) Checks for working const, and if not found defines it to empty string Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-z58yn1\config.types\conftest.c(25) : warning C4700: uninitialized local variable 'x' used c:\cygwin\tmp\petsc-z58yn1\config.types\conftest.c(30) : warning C4700: uninitialized local variable 't' used c:\cygwin\tmp\petsc-z58yn1\config.types\conftest.c(46) : warning C4700: uninitialized local variable 'b' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:214) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:214) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { /* Are we little or big endian? From Harbison&Steele. */ union { long l; char c[sizeof(long)]; } u; u.l = 1; exit(u.c[sizeof(long) - 1] == 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:318) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:318) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.types/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Executing: /tmp/petsc-Z58YN1/config.types/conftest.exe Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:364) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:364) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-Z58YN1/config.libraries Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST checkMath from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:250) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:250) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:266) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:266) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: erf() not found ================================================================================ TEST checkMathTgamma from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:275) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:275) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: tgamma() not found ================================================================================ TEST checkMathFenv from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:284) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:284) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Compile failed inside link Popping language C Warning: with FE_DFL_ENV not found ================================================================================ TEST checkCompression from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:292) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:292) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -lz stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Popping language C Checking for functions [compress uncompress] in library ['zlib.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o zlib.lib stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Popping language C Warning: No compression library found ================================================================================ TEST checkRealtime from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:313) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:313) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:329) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:329) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -ldl stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Popping language C Checking for header: dlfcn.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.headers /tmp/petsc-Z58YN1/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-z58yn1\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE5535~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE5535~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureTimers from PETSc.utilities.timer(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for functions [MPI_CRAY_barrier] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); static void _check_MPI_CRAY_barrier() { MPI_CRAY_barrier(); } int main() { _check_MPI_CRAY_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:39) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:39) Checks for limits All intermediate test results are stored in /tmp/petsc-Z58YN1/PETSc.utilities.missing Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:49) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:49) Checks if u_short is undefined Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } Defined "NEEDS_UTYPE_TYPEDEFS" to "1" ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:55) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:55) Checks for SOCKETS Checking for functions [socket] in library ['Ws2_32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_socket() { socket(0,0,0);; } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o Ws2_32.lib Defined "HAVE_LIBWS2_32" to "1" Popping language C Adding ['Ws2_32.lib'] to LIBS Defined "HAVE_WINSOCK2_H" to "1" Defined "HAVE_SOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { closesocket(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o Ws2_32.lib Defined "HAVE_CLOSESOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { WSAGetLastError(); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_WSAGETLASTERROR" to "1" ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:75) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:75) Check for missing signals, and define MISSING_ if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Defined "MISSING_SIGALRM" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Defined "MISSING_SIGBUS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Defined "MISSING_SIGCHLD" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Defined "MISSING_SIGCONT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Defined "MISSING_SIGHUP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Defined "MISSING_SIGKILL" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Defined "MISSING_SIGPIPE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Defined "MISSING_SIGQUIT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Defined "MISSING_SIGSTOP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Defined "MISSING_SIGSYS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Defined "MISSING_SIGTRAP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Defined "MISSING_SIGTSTP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Defined "MISSING_SIGURG" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Defined "MISSING_SIGUSR1" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } Defined "MISSING_SIGUSR2" to "1" ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:92) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:92) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Added prototype #include int getdomainname(char *, size_t); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Added prototype #include int getdomainname(char *, size_t); to language extern C Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:117) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:117) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Added prototype double drand48(void); to language C Added prototype void srand48(long int); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-Z58YN1/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE5535~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Compile failed inside link Added prototype double drand48(void); to language extern C Added prototype void srand48(long int); to language extern C Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:141) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:141) ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-Z58YN1/config.libraries/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [GET_COMMAND_ARGUMENT] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GET_COMMAND_ARGUMENT(); static void _check_GET_COMMAND_ARGUMENT() { GET_COMMAND_ARGUMENT(); } int main() { _check_GET_COMMAND_ARGUMENT();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [GETARG] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GETARG(); static void _check_GETARG() { GETARG(); } int main() { _check_GETARG();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE5535~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [ipxfargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [f90_unix_MP_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [iargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [GETARG at 16] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')'Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG at 16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) GETARG at 16_will_always_fail_with_ENOSYS(); #else GETARG at 16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.functions/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE5535~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST configureMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:61) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:61) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gmake...not found Checking for program /cygdrive/c/Windows/system32/gmake...not found Checking for program /cygdrive/c/Windows/gmake...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gmake...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gmake...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gmake...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gmake...not found Checking for program /cygdrive/c/MinGW/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/gmake...not found Checking for program /home/dsu/gmake...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:79) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:79) Check for GNU make Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: $xqB [^_] [^_] 3S$3C [^_] ,[^_] <-tL<@t<<+uI ,[^_] ue;} <@u. [^_] [^] r.v(1 [^_] [^_] L[^_] [^_] [^_] [^_] t+;5 [^_] [^_] <[^_] $/*B $L*B <[^_] [^_] [^_] $T+B $T+B $T+B $4+B ,[^_] [^_] ,[^_] $l,B S$;V$ [^_] $4,B $l-B $H-B [^_] <[^_] ,[^_] <[^_] $T.B $G.B $`/B $e0B $z0B $|1B $(/B @[^] $P0B $80B $`1B $<1B <[^_] 2[^_] 2^_] 2^_] 2[^_] 2^_] 2^_] ,[^_] ;] [^_] [^_] t6;} [^_] \[^_] [^_] $,7B $h6B $@6B $@6B WVSP $\7B [^_] $08B $T8B $|8B $U9B [^] $h9B [^_] [^_] <\t__B 8.t. $m`B $V`B $+5P $(`B [^_] [^_] $$aB $HaB $5^B [^_] L[^_ $2aB L[^_] $5^B WVSP [^_] [^_] [^_] BN at t [^] [^_] ;-tc $4bB $,bB $DbB S$tL @N at u [^_] [^_] $$cB $tcB [^_] $CgB $DcB $lB ,[^_] $RlB t.<$u $ZlB ,[^_] [^_] [^_] [^_] [^_] t.;5 WVS1 8.t( [^_] [^_] tj=t ,[^_] ,[^_] $(){}$`^~! cyggcc_s-1.dll __register_frame_info cyggcj-11.dll _Jv_RegisterClasses __deregister_frame_info attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES Recipe has too many lines (%ud) $(MAKE) ${MAKE} kill # recipe to execute (built-in): (from `%s', line %lu): %c%.*s .SUFFIXES SUFFIXES ARFLAGS OBJC CHECKOUT,v +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi WEAVE weave CWEAVE cweave TANGLE tangle CTANGLE ctangle rm -f LINK.o $(CC) $(LDFLAGS) $(TARGET_ARCH) COMPILE.c $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t YACC.m LEX.m COMPILE.f $(FC) $(FFLAGS) $(TARGET_ARCH) -c LINK.f $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.F $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c LINK.r $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.def $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) COMPILE.mod $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) COMPILE.p $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.p $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.s $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.s $(AS) $(ASFLAGS) $(TARGET_MACH) LINK.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F PREPROCESS.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F LINT.c $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< SCCS/s.% $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ .cpp $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.m) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ .mod $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o $(COMPILE.c) $(OUTPUT_OPTION) $< .cc.o $(COMPILE.cc) $(OUTPUT_OPTION) $< .C.o $(COMPILE.C) $(OUTPUT_OPTION) $< .cpp.o $(COMPILE.cpp) $(OUTPUT_OPTION) $< .f.o $(COMPILE.f) $(OUTPUT_OPTION) $< .m.o $(COMPILE.m) $(OUTPUT_OPTION) $< .p.o $(COMPILE.p) $(OUTPUT_OPTION) $< .F.o $(COMPILE.F) $(OUTPUT_OPTION) $< .r.o $(COMPILE.r) $(OUTPUT_OPTION) $< .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c .l.ln @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c .y.c $(YACC.y) $< mv -f y.tab.c $@ .l.c @$(RM) $@ $(LEX.l) $< > $@ .ym.m $(YACC.m) $< mv -f y.tab.c $@ .lm.m @$(RM) $@ $(LEX.m) $< > $@ .F.f $(PREPROCESS.F) $(OUTPUT_OPTION) $< .r.f $(PREPROCESS.r) $(OUTPUT_OPTION) $< .l.r $(LEX.l) $< > $@ mv -f lex.yy.r $@ .S.s $(PREPROCESS.S) $< > $@ .texinfo.info $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' name %s: Field '%s' not cached: %s hname vpath stem *name != '\0' /netrel/src/make-3.82.90-1/file.c strcache_iscached (name) Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... unlink: .SUFFIXES .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time %s: Timestamp out of range; substituting %s | %s .RECIPEPREFIX = # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. question_flag # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Files # files hash-table stats: print_file enter_file lookup_file undefined recursive simple Internal error: func_error: '%s' insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' warning: undefined variable `%.*s' default environment file environment override command line override automatic suffix basename addprefix filter %s: '%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s unterminated call to function `%s': missing `%c' abspath addsuffix notdir subst filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). *** (core dumped) (ignored) %s:%lu %s: recipe for target `%s' failed %s[%s] Error %d%s %s[%s] %s%s%s bash rksh dash ap <= end /netrel/src/make-3.82.90-1/job.c %s (line %d) Bad shell context (!unixy && !batch_mode_shell) %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) vfork cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) (remote) Putting child %p (%s) PID %s%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. %s: target `%s' does not exist %s: update target `%s' due to: %s construct_command_argv_internal break case continue eval exec exit export login logout read readonly shift switch test times trap ulimit umask unset while start_waiting_job %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to /tmp /usr/share/locale make getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine oneshell archives jobserver check-symlink .FEATURES SHELL MAKE_RESTARTS unknown debug level specification `%s' MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u BOGUS_UPDATE_STATUS /netrel/src/make-3.82.90-1/main.c unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. main always-make directory basic debug environment-overrides file help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch trace version print-directory no-print-directory what-if warn-undefined-variables eval quiet stop new-file assume-new assume-old max-load dry-run recon makefile Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. --trace Print tracing information. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. %s: %s[%u]: %s:%lu: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s %s: %s virtual memory exhausted write error: %s write error ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional warning: NUL character seen; rest of line ignored export override private define undefine prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SHELLFLAGS .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' $(HOME) HOME .INCLUDE_DIRS virtual memory exhausted empty variable name extraneous text after `define' directive missing `endef', unterminated `define' endef extraneous text after `endef' directive v != NULL /netrel/src/make-3.82.90-1/read.c invalid syntax in conditional unexport vpath include -include sinclude %s: %s recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s *p2 != '\0' v != 0 Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no `%%' .DEFAULT_GOAL missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /usr/include /usr/gnu/include /usr/local/include eval record_target_var GNUmakefile makefile Makefile stat: lstat: readlink: %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s %.2g Warning: File `%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 /netrel/src/make-3.82.90-1/remake.c Using default commands for `%s'. Nothing to be done for `%s'. `%s' is up to date. /lib /usr/lib update_file_1 _(knN r->suffixes[0] != NULL /netrel/src/make-3.82.90-1/rule.c r->suffixes[i] != NULL (%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u create_pattern_rule install_pattern_rule %s No strcache buffers total_buffers == numbuffs + 1 /netrel/src/make-3.82.90-1/strcache.c %s strcache buffers: %lu (%lu) / strings = %lu / storage = %lu B / avg = %lu B %s current buf: size = %hu B / used = %hu B / count = %hu / avg = %hu B %s other used: total = %lu B / count = %lu / avg = %lu B %s other free: total = %lu B / max = %lu B / min = %lu B / avg = %hu B %s strcache performance: lookups = %lu / hit rate = %lu%% # hash-table stats: strcache_print_stats automatic default environment makefile environment under -e command line `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) .RECIPEPREFIX .VARIABLES current_variable_set_list->next != NULL /netrel/src/make-3.82.90-1/variable.c MAKELEVEL %s%s%s MAKE_VERSION SHELL MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) %s=%u empty variable name # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # %u pattern-specific variable values # No pattern-specific variable values. pop_variable_scope 3.82.90 i686-pc-cygwin $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% BPOSIXLY_CORRECT alnum alpha blank cntrl digit graph lower print punct space upper xdigit next != NULL /netrel/src/make-3.82.90-1/glob/glob.c HOME glob GetModuleHandleA GetProcAddress __assert_func __ctype_ptr__ __errno __getreent __main _dll_crt0 at 0 _exit _fcntl64 _fdopen64 _fopen64 _fstat64 _impure_ptr _lseek64 _lstat64 _open64 _stat64 abort alarm atexit atof atoi atol calloc chdir clock_gettime close closedir ctime cygwin_detach_dll cygwin_internal dll_dllcrt0 dup2 execvp exit fclose fflush fgets fileno fork fprintf fputs fread free fwrite getcwd getenv getlogin getpid getpwnam getrlimit kill localtime malloc memcpy memmove memset mkstemp opendir pipe printf putc putenv puts qsort read readdir readlink realloc realpath remove setlocale setrlimit setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf strchr strcmp strcpy strdup strerror strlen strncmp strncpy strndup strpbrk strrchr strsignal strstr time tolower unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-8.dll Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 12 cores: using make_np = 10 Defined make macro "MAKE_NP" to "10" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:744) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:744) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified MPI libraries: ['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] Contents: ['Bin', 'Inc', 'Lib', 'License'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-Z58YN1/config.libraries/conftest.o -I/tmp/petsc-Z58YN1/config.setCompilers -I/tmp/petsc-Z58YN1/config.compilers -I/tmp/petsc-Z58YN1/config.headers -I/tmp/petsc-Z58YN1/PETSc.utilities.cacheDetails -I/tmp/petsc-Z58YN1/PETSc.utilities.featureTestMacros -I/tmp/petsc-Z58YN1/config.types -I/tmp/petsc-Z58YN1/config.functions -I/tmp/petsc-Z58YN1/config.libraries -I/tmp/petsc-Z58YN1/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-Z58YN1/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-Z58YN1/config.libraries/conftest.o /cygdrive/c/Program -lFiles/Microsoft -lHPC -lPack -l2008 R2/Lib/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: R2/Lib/amd64/msmpi.lib cl : Command line warning D9024 : unrecognized source file type 'C:\\Program', object file assumed LINK : fatal error LNK1104: cannot open file 'C:\\Program.obj' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: R2/Lib/amd64/msmpi.lib cl : Command line warning D9024 : unrecognized source file type 'C:\\Program', object file assumed LINK : fatal error LNK1104: cannot open file 'C:\\Program.obj' Popping language C **** Configure header /tmp/petsc-Z58YN1/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef _USE_MATH_DEFINES #define _USE_MATH_DEFINES 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_IO_H #define PETSC_HAVE_IO_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_DIRECT_H #define PETSC_HAVE_DIRECT_H 1 #endif #ifndef PETSC_HAVE_WINDOWSX_H #define PETSC_HAVE_WINDOWSX_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_DOS_H #define PETSC_HAVE_DOS_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_WS2TCPIP_H #define PETSC_HAVE_WS2TCPIP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_FORTRAN_CAPS #define PETSC_HAVE_FORTRAN_CAPS 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static __inline #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBWS2_32 #define PETSC_HAVE_LIBWS2_32 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-mswin-c-debug" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE___INT64 #define PETSC_HAVE___INT64 1 #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 4 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_uid_t #define PETSC_uid_t int #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_gid_t #define PETSC_gid_t int #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE__LSEEK #define PETSC_HAVE__LSEEK 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE__GETCWD #define PETSC_HAVE__GETCWD 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE__SLEEP #define PETSC_HAVE__SLEEP 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE__VSNPRINTF #define PETSC_HAVE__VSNPRINTF 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_STRICMP #define PETSC_HAVE_STRICMP 1 #endif #ifndef PETSC_HAVE__SNPRINTF #define PETSC_HAVE__SNPRINTF 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE__ACCESS #define PETSC_HAVE__ACCESS 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_MISSING_SIGUSR2 #define PETSC_MISSING_SIGUSR2 1 #endif #ifndef PETSC_MISSING_SIGURG #define PETSC_MISSING_SIGURG 1 #endif #ifndef PETSC_MISSING_SIGPIPE #define PETSC_MISSING_SIGPIPE 1 #endif #ifndef PETSC_MISSING_SIGHUP #define PETSC_MISSING_SIGHUP 1 #endif #ifndef PETSC_MISSING_SIGSTOP #define PETSC_MISSING_SIGSTOP 1 #endif #ifndef PETSC_MISSING_SIGSYS #define PETSC_MISSING_SIGSYS 1 #endif #ifndef PETSC_MISSING_SIGCONT #define PETSC_MISSING_SIGCONT 1 #endif #ifndef PETSC_HAVE_WSAGETLASTERROR #define PETSC_HAVE_WSAGETLASTERROR 1 #endif #ifndef PETSC_HAVE_CLOSESOCKET #define PETSC_HAVE_CLOSESOCKET 1 #endif #ifndef PETSC_MISSING_SIGTSTP #define PETSC_MISSING_SIGTSTP 1 #endif #ifndef PETSC_MISSING_SIGCHLD #define PETSC_MISSING_SIGCHLD 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_MISSING_SIGUSR1 #define PETSC_MISSING_SIGUSR1 1 #endif #ifndef PETSC_MISSING_SIGTRAP #define PETSC_MISSING_SIGTRAP 1 #endif #ifndef PETSC_MISSING_SIGQUIT #define PETSC_MISSING_SIGQUIT 1 #endif #ifndef PETSC_MISSING_SIGBUS #define PETSC_MISSING_SIGBUS 1 #endif #ifndef PETSC_HAVE_WINSOCK2_H #define PETSC_HAVE_WINSOCK2_H 1 #endif #ifndef PETSC_MISSING_SIGALRM #define PETSC_MISSING_SIGALRM 1 #endif #ifndef PETSC_NEEDS_UTYPE_TYPEDEFS #define PETSC_NEEDS_UTYPE_TYPEDEFS 1 #endif #ifndef PETSC_MISSING_SIGKILL #define PETSC_MISSING_SIGKILL 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #endif **** C specific Configure header /tmp/petsc-Z58YN1/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN typedef int int32_t; typedef int mode_t; typedef int pid_t; #if defined(__cplusplus) extern "C" { #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); } #else #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] and --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc'] did not work ******************************************************************************* File "./config/configure.py", line 272, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py", line 935, in configure child.configure() File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 571, in configure self.executeTest(self.configureLibrary) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py", line 748, in configureLibrary config.package.Package.configureLibrary(self) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 499, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 303, in generateGuesses raise RuntimeError(msg) ================================================================================ Finishing Configure Run at Thu Jan 30 17:51:38 2014 ================================================================================ From cedric.doucet at inria.fr Fri Jan 31 03:23:28 2014 From: cedric.doucet at inria.fr (Cedric Doucet) Date: Fri, 31 Jan 2014 10:23:28 +0100 (CET) Subject: [petsc-users] Input arguments of DMPlexCreateFromDAG In-Reply-To: Message-ID: <656844839.455827.1391160208156.JavaMail.root@inria.fr> Thank you for your answer. I understand well the reason why coneSize begins with faces of cells and vertices first. However, I am not sure to understand how cone points are numbered in the definition of . For example, in CreateSimplex2D in ex5.c (two triangles sharing an edge), we have: PetscInt numPoints[3] = {4, 5, 2}; PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 2, 2, 2, 2, 2}; PetscInt cones[16] = {6, 7, 8, 9, 7, 10, 2, 3, 3, 4, 4, 2, 5, 4, 3, 5}; PetscInt coneOrientations[16] = {0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}; PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, 0.5, 0.5}; The fact that coneOrientations[4] equals -2 means that edge cones[4]=7 must be oriented in reverse order starting at vertex 1. However, edge 7 is defined by vertices (3,4). Does it mean that a local numbering is used here: (3,4)~(v0,v1)? In algebraic topology, a convenient way to orient simplices is to number their vertices in ascendant order. For example, an edge (i,j) is oriented so that i De: "Matthew Knepley" > ?: "Cedric Doucet" > Cc: petsc-users at mcs.anl.gov > Envoy?: Jeudi 30 Janvier 2014 19:26:36 > Objet: Re: [petsc-users] Input arguments of DMPlexCreateFromDAG > On Thu, Jan 30, 2014 at 12:19 PM, Cedric Doucet < > cedric.doucet at inria.fr > wrote: > > Hello, > > > I tried to use DMPlexCreateFromDAG function to create a DM > > structure > > from a hybrid mesh. > > > To understand how it works, I look at ex5.c file. > > > Unfortunately, there are some things that I do not understand. > > > 1. Why does coneSize lists faces of cells first, then faces of > > vertices and finally faces of edges (in 2D)? Listing faces of > > vertices, then faces of edges and finally faces of cells is not > > simpler? > > This is really about what order you number points. I wanted to > support meshes with just cells and vertices, as well as > those with face and edges. I also wanted to be able to convert > between them. Thus it made sense to leave the cell > and vertex numbers invariant under this change. I still think this is > the best pragmatic alternative. > > 2 What does coneOrientations contain? For two counterclockwise > > oriented triangles sharing an edge e={v0,v1}, I understand that > > {v0,v1} is the right oriented edge for the second triangle (and e > > for the first one) but what is the meaning of value -2? I read that > > it is -(o+1) with o=1 but why does o equal 1 in this case? > > Right now, orientation o = means: > : + means traverse in cone order > - means traverse in the reverse of cone order > : cone point to start iteration on > if is -, then start on point -(+1) > Thus -2 means start on point 1 and go in reverse order, so > for an edge that would be {1, 0} which is what you want. > What we should really have is identify a group element from > the symmetry > group of the point, and indicate inversion. However, that will > be a big rewrite > and needs to be motivated by applications. > Matt > > Thank you very much for your help! > > > Best regards, > > > C?dric Doucet > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Jan 31 05:21:40 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 31 Jan 2014 05:21:40 -0600 Subject: [petsc-users] Input arguments of DMPlexCreateFromDAG In-Reply-To: <656844839.455827.1391160208156.JavaMail.root@inria.fr> References: <656844839.455827.1391160208156.JavaMail.root@inria.fr> Message-ID: On Fri, Jan 31, 2014 at 3:23 AM, Cedric Doucet wrote: > > Thank you for your answer. > I understand well the reason why coneSize begins with faces of cells and > vertices first. > However, I am not sure to understand how cone points are numbered in the > definition of . > For example, in CreateSimplex2D in ex5.c (two triangles sharing an edge), > we have: > > PetscInt numPoints[3] = {4, 5, 2}; > PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 2, 2, 2, 2, 2}; > PetscInt cones[16] = {6, 7, 8, 9, 7, 10, 2, 3, 3, > 4, 4, 2, 5, 4, 3, 5}; > PetscInt coneOrientations[16] = {0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, > 0, 0, 0, 0, 0}; > PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, 0.5, > 0.5}; > > The fact that coneOrientations[4] equals -2 means that edge cones[4]=7 > must be oriented in reverse order starting at vertex 1. > However, edge 7 is defined by vertices (3,4). Does it mean that a local > numbering is used here: (3,4)~(v0,v1)? > Yes, exactly the numbering from cones[8-9]. > In algebraic topology, a convenient way to orient simplices is to number > their vertices in ascendant order. > For example, an edge (i,j) is oriented so that i oriented so that i Can we adopt the same convention here and does it simplify something? > No, because we do not have exclusively simplices. You can simplify by only specifying cells and vertices, which need no orientations, and then calling DMPlexInterpolate(). Matt > Best regards, > > C?dric Doucet > > > ------------------------------ > > *De: *"Matthew Knepley" > *?: *"Cedric Doucet" > *Cc: *petsc-users at mcs.anl.gov > *Envoy?: *Jeudi 30 Janvier 2014 19:26:36 > *Objet: *Re: [petsc-users] Input arguments of DMPlexCreateFromDAG > > On Thu, Jan 30, 2014 at 12:19 PM, Cedric Doucet wrote: > >> Hello, >> I tried to use DMPlexCreateFromDAG function to create a DM structure from >> a hybrid mesh. >> To understand how it works, I look at ex5.c file. >> Unfortunately, there are some things that I do not understand. >> 1. Why does coneSize lists faces of cells first, then faces of vertices >> and finally faces of edges (in 2D)? Listing faces of vertices, then faces >> of edges and finally faces of cells is not simpler? >> > > This is really about what order you number points. I wanted to support > meshes with just cells and vertices, as well as > those with face and edges. I also wanted to be able to convert between > them. Thus it made sense to leave the cell > and vertex numbers invariant under this change. I still think this is the > best pragmatic alternative. > > >> 2 What does coneOrientations contain? For two counterclockwise oriented >> triangles sharing an edge e={v0,v1}, I understand that {v0,v1} is the right >> oriented edge for the second triangle (and e for the first one) but what >> is the meaning of value -2? I read that it is -(o+1) with o=1 but why does >> o equal 1 in this case? >> > > Right now, orientation o = means: > > : + means traverse in cone order > - means traverse in the reverse of cone order > > : cone point to start iteration on > if is -, then start on point -(+1) > > Thus -2 means start on point 1 and go in reverse order, so > for an edge that would be {1, 0} which is what you want. > > What we should really have is identify a group element from the > symmetry > group of the point, and indicate inversion. However, that will be a > big rewrite > and needs to be motivated by applications. > > Matt > > Thank you very much for your help! >> Best regards, >> C?dric Doucet >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From cedric.doucet at inria.fr Fri Jan 31 05:55:35 2014 From: cedric.doucet at inria.fr (Cedric Doucet) Date: Fri, 31 Jan 2014 12:55:35 +0100 (CET) Subject: [petsc-users] Input arguments of DMPlexCreateFromDAG In-Reply-To: Message-ID: <867550948.507928.1391169335065.JavaMail.root@inria.fr> Hello, DMPlexInterpolate is very interesting! Is it slow? If I want to call DMplexInterpolate, just after DMPlexCreateFromDAG call, for the example of two triangles sharing an edge, I only have to specify cells and vertices like this in DMPlexCreateFromDAG: PetscInt numPoints[3] = {4, 0, 2}; PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0}; PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, 0.5, 0.5}; and let cones and coneOrientations be empty? C?dric ----- Mail original ----- > De: "Matthew Knepley" > ?: "Cedric Doucet" > Cc: petsc-users at mcs.anl.gov > Envoy?: Vendredi 31 Janvier 2014 12:21:40 > Objet: Re: [petsc-users] Input arguments of DMPlexCreateFromDAG > On Fri, Jan 31, 2014 at 3:23 AM, Cedric Doucet < > cedric.doucet at inria.fr > wrote: > > Thank you for your answer. > > > I understand well the reason why coneSize begins with faces of > > cells > > and vertices first. > > > However, I am not sure to understand how cone points are numbered > > in > > the definition of . > > > For example, in CreateSimplex2D in ex5.c (two triangles sharing an > > edge), we have: > > > PetscInt numPoints[3] = {4, 5, 2}; > > > PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 2, 2, 2, 2, 2}; > > > PetscInt cones[16] = {6, 7, 8, 9, 7, 10, 2, 3, 3, 4, 4, 2, 5, 4, 3, > > 5}; > > > PetscInt coneOrientations[16] = {0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, > > 0, > > 0, 0, 0, 0}; > > > PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, 0.5, > > 0.5}; > > > The fact that coneOrientations[4] equals -2 means that edge > > cones[4]=7 must be oriented in reverse order starting at vertex 1. > > > However, edge 7 is defined by vertices (3,4). Does it mean that a > > local numbering is used here: (3,4)~(v0,v1)? > > Yes, exactly the numbering from cones[8-9]. > > In algebraic topology, a convenient way to orient simplices is to > > number their vertices in ascendant order. > > > For example, an edge (i,j) is oriented so that i > is > > oriented so that i > > Can we adopt the same convention here and does it simplify > > something? > > No, because we do not have exclusively simplices. > You can simplify by only specifying cells and vertices, which need no > orientations, and then calling DMPlexInterpolate(). > Matt > > Best regards, > > > C?dric Doucet > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > Envoy?: Jeudi 30 Janvier 2014 19:26:36 > > > > > > Objet: Re: [petsc-users] Input arguments of DMPlexCreateFromDAG > > > > > > On Thu, Jan 30, 2014 at 12:19 PM, Cedric Doucet < > > > cedric.doucet at inria.fr > wrote: > > > > > > > Hello, > > > > > > > > > > I tried to use DMPlexCreateFromDAG function to create a DM > > > > structure > > > > from a hybrid mesh. > > > > > > > > > > To understand how it works, I look at ex5.c file. > > > > > > > > > > Unfortunately, there are some things that I do not understand. > > > > > > > > > > 1. Why does coneSize lists faces of cells first, then faces of > > > > vertices and finally faces of edges (in 2D)? Listing faces of > > > > vertices, then faces of edges and finally faces of cells is not > > > > simpler? > > > > > > > > > This is really about what order you number points. I wanted to > > > support meshes with just cells and vertices, as well as > > > > > > those with face and edges. I also wanted to be able to convert > > > between them. Thus it made sense to leave the cell > > > > > > and vertex numbers invariant under this change. I still think > > > this > > > is > > > the best pragmatic alternative. > > > > > > > 2 What does coneOrientations contain? For two counterclockwise > > > > oriented triangles sharing an edge e={v0,v1}, I understand that > > > > {v0,v1} is the right oriented edge for the second triangle (and > > > > e > > > > for the first one) but what is the meaning of value -2? I read > > > > that > > > > it is -(o+1) with o=1 but why does o equal 1 in this case? > > > > > > > > > Right now, orientation o = means: > > > > > > : + means traverse in cone order > > > > > > - means traverse in the reverse of cone order > > > > > > : cone point to start iteration on > > > > > > if is -, then start on point -(+1) > > > > > > Thus -2 means start on point 1 and go in reverse order, so > > > > > > for an edge that would be {1, 0} which is what you want. > > > > > > What we should really have is identify a group element > > > from > > > the symmetry > > > > > > group of the point, and indicate inversion. However, that > > > will > > > be a big rewrite > > > > > > and needs to be motivated by applications. > > > > > > Matt > > > > > > > Thank you very much for your help! > > > > > > > > > > Best regards, > > > > > > > > > > C?dric Doucet > > > > > > > > > -- > > > > > > What most experimenters take for granted before they begin their > > > experiments is infinitely more interesting than any results to > > > which > > > their experiments lead. > > > > > > -- Norbert Wiener > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Jan 31 06:11:14 2014 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 31 Jan 2014 06:11:14 -0600 Subject: [petsc-users] Input arguments of DMPlexCreateFromDAG In-Reply-To: <867550948.507928.1391169335065.JavaMail.root@inria.fr> References: <867550948.507928.1391169335065.JavaMail.root@inria.fr> Message-ID: On Fri, Jan 31, 2014 at 5:55 AM, Cedric Doucet wrote: > > Hello, > > DMPlexInterpolate is very interesting! > Is it slow? > It is as fast as I know how to make it. It uses hashing to find the matches. > If I want to call DMplexInterpolate, just after DMPlexCreateFromDAG call, > for the example of two triangles sharing an edge, I only have to specify > cells and vertices like this in DMPlexCreateFromDAG: > > PetscInt numPoints[3] = {4, 0, 2}; > PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0}; > PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, 0.5, > 0.5}; > > and let cones and coneOrientations be empty? > cones[] would be the vertices in each cell, and coneOrientations would be all zeros. Matt > C?dric > > ------------------------------ > > *De: *"Matthew Knepley" > *?: *"Cedric Doucet" > *Cc: *petsc-users at mcs.anl.gov > *Envoy?: *Vendredi 31 Janvier 2014 12:21:40 > *Objet: *Re: [petsc-users] Input arguments of DMPlexCreateFromDAG > > On Fri, Jan 31, 2014 at 3:23 AM, Cedric Doucet wrote: > >> >> Thank you for your answer. >> I understand well the reason why coneSize begins with faces of cells and >> vertices first. >> However, I am not sure to understand how cone points are numbered in the >> definition of . >> For example, in CreateSimplex2D in ex5.c (two triangles sharing an edge), >> we have: >> >> PetscInt numPoints[3] = {4, 5, 2}; >> PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 2, 2, 2, 2, 2}; >> PetscInt cones[16] = {6, 7, 8, 9, 7, 10, 2, 3, 3, >> 4, 4, 2, 5, 4, 3, 5}; >> PetscInt coneOrientations[16] = {0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, >> 0, 0, 0, 0, 0}; >> PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, 0.5, >> 0.5}; >> >> The fact that coneOrientations[4] equals -2 means that edge cones[4]=7 >> must be oriented in reverse order starting at vertex 1. >> However, edge 7 is defined by vertices (3,4). Does it mean that a local >> numbering is used here: (3,4)~(v0,v1)? >> > > Yes, exactly the numbering from cones[8-9]. > > >> In algebraic topology, a convenient way to orient simplices is to number >> their vertices in ascendant order. >> For example, an edge (i,j) is oriented so that i> oriented so that i> Can we adopt the same convention here and does it simplify something? >> > > No, because we do not have exclusively simplices. > > You can simplify by only specifying cells and vertices, which need no > orientations, and then calling DMPlexInterpolate(). > > Matt > > >> Best regards, >> >> C?dric Doucet >> >> >> ------------------------------ >> >> *De: *"Matthew Knepley" >> *?: *"Cedric Doucet" >> *Cc: *petsc-users at mcs.anl.gov >> *Envoy?: *Jeudi 30 Janvier 2014 19:26:36 >> *Objet: *Re: [petsc-users] Input arguments of DMPlexCreateFromDAG >> >> On Thu, Jan 30, 2014 at 12:19 PM, Cedric Doucet wrote: >> >>> Hello, >>> I tried to use DMPlexCreateFromDAG function to create a DM structure >>> from a hybrid mesh. >>> To understand how it works, I look at ex5.c file. >>> Unfortunately, there are some things that I do not understand. >>> 1. Why does coneSize lists faces of cells first, then faces of vertices >>> and finally faces of edges (in 2D)? Listing faces of vertices, then faces >>> of edges and finally faces of cells is not simpler? >>> >> >> This is really about what order you number points. I wanted to support >> meshes with just cells and vertices, as well as >> those with face and edges. I also wanted to be able to convert between >> them. Thus it made sense to leave the cell >> and vertex numbers invariant under this change. I still think this is the >> best pragmatic alternative. >> >> >>> 2 What does coneOrientations contain? For two counterclockwise oriented >>> triangles sharing an edge e={v0,v1}, I understand that {v0,v1} is the right >>> oriented edge for the second triangle (and e for the first one) but >>> what is the meaning of value -2? I read that it is -(o+1) with o=1 but why >>> does o equal 1 in this case? >>> >> >> Right now, orientation o = means: >> >> : + means traverse in cone order >> - means traverse in the reverse of cone order >> >> : cone point to start iteration on >> if is -, then start on point -(+1) >> >> Thus -2 means start on point 1 and go in reverse order, so >> for an edge that would be {1, 0} which is what you want. >> >> What we should really have is identify a group element from the >> symmetry >> group of the point, and indicate inversion. However, that will be >> a big rewrite >> and needs to be motivated by applications. >> >> Matt >> >> Thank you very much for your help! >>> Best regards, >>> C?dric Doucet >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From cedric.doucet at inria.fr Fri Jan 31 06:14:35 2014 From: cedric.doucet at inria.fr (Cedric Doucet) Date: Fri, 31 Jan 2014 13:14:35 +0100 (CET) Subject: [petsc-users] Input arguments of DMPlexCreateFromDAG In-Reply-To: Message-ID: <1434785079.521041.1391170475927.JavaMail.root@inria.fr> Thank you very much for your help! I will test this solution. Best regards, C?dric ----- Mail original ----- > De: "Matthew Knepley" > ?: "Cedric Doucet" > Cc: petsc-users at mcs.anl.gov > Envoy?: Vendredi 31 Janvier 2014 13:11:14 > Objet: Re: [petsc-users] Input arguments of DMPlexCreateFromDAG > On Fri, Jan 31, 2014 at 5:55 AM, Cedric Doucet < > cedric.doucet at inria.fr > wrote: > > Hello, > > > DMPlexInterpolate is very interesting! > > > Is it slow? > > It is as fast as I know how to make it. It uses hashing to find the > matches. > > If I want to call DMplexInterpolate, just after DMPlexCreateFromDAG > > call, for the example of two triangles sharing an edge, I only have > > to specify cells and vertices like this in DMPlexCreateFromDAG: > > > PetscInt numPoints[3] = {4, 0, 2}; > > > PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0}; > > > PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, 0.5, > > 0.5}; > > > and let cones and coneOrientations be empty? > > cones[] would be the vertices in each cell, and coneOrientations > would be all zeros. > Matt > > C?dric > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > Envoy?: Vendredi 31 Janvier 2014 12:21:40 > > > > > > Objet: Re: [petsc-users] Input arguments of DMPlexCreateFromDAG > > > > > > On Fri, Jan 31, 2014 at 3:23 AM, Cedric Doucet < > > > cedric.doucet at inria.fr > wrote: > > > > > > > Thank you for your answer. > > > > > > > > > > I understand well the reason why coneSize begins with faces of > > > > cells > > > > and vertices first. > > > > > > > > > > However, I am not sure to understand how cone points are > > > > numbered > > > > in > > > > the definition of . > > > > > > > > > > For example, in CreateSimplex2D in ex5.c (two triangles sharing > > > > an > > > > edge), we have: > > > > > > > > > > PetscInt numPoints[3] = {4, 5, 2}; > > > > > > > > > > PetscInt coneSize[11] = {3, 3, 0, 0, 0, 0, 2, 2, 2, 2, 2}; > > > > > > > > > > PetscInt cones[16] = {6, 7, 8, 9, 7, 10, 2, 3, 3, 4, 4, 2, 5, > > > > 4, > > > > 3, > > > > 5}; > > > > > > > > > > PetscInt coneOrientations[16] = {0, 0, 0, 0, -2, 0, 0, 0, 0, 0, > > > > 0, > > > > 0, > > > > 0, 0, 0, 0}; > > > > > > > > > > PetscScalar vertexCoords[8] = {-0.5, 0.5, 0.0, 0.0, 0.0, 1.0, > > > > 0.5, > > > > 0.5}; > > > > > > > > > > The fact that coneOrientations[4] equals -2 means that edge > > > > cones[4]=7 must be oriented in reverse order starting at vertex > > > > 1. > > > > > > > > > > However, edge 7 is defined by vertices (3,4). Does it mean that > > > > a > > > > local numbering is used here: (3,4)~(v0,v1)? > > > > > > > > > Yes, exactly the numbering from cones[8-9]. > > > > > > > In algebraic topology, a convenient way to orient simplices is > > > > to > > > > number their vertices in ascendant order. > > > > > > > > > > For example, an edge (i,j) is oriented so that i > > > (i,j,k) > > > > is > > > > oriented so that i > > > > > > > > > Can we adopt the same convention here and does it simplify > > > > something? > > > > > > > > > No, because we do not have exclusively simplices. > > > > > > You can simplify by only specifying cells and vertices, which > > > need > > > no > > > orientations, and then calling DMPlexInterpolate(). > > > > > > Matt > > > > > > > Best regards, > > > > > > > > > > C?dric Doucet > > > > > > > > > > > De: "Matthew Knepley" < knepley at gmail.com > > > > > > > > > > > > > > > > ?: "Cedric Doucet" < cedric.doucet at inria.fr > > > > > > > > > > > > > > > > Cc: petsc-users at mcs.anl.gov > > > > > > > > > > > > > > > Envoy?: Jeudi 30 Janvier 2014 19:26:36 > > > > > > > > > > > > > > > Objet: Re: [petsc-users] Input arguments of > > > > > DMPlexCreateFromDAG > > > > > > > > > > > > > > > On Thu, Jan 30, 2014 at 12:19 PM, Cedric Doucet < > > > > > cedric.doucet at inria.fr > wrote: > > > > > > > > > > > > > > > > Hello, > > > > > > > > > > > > > > > > > > > > > I tried to use DMPlexCreateFromDAG function to create a DM > > > > > > structure > > > > > > from a hybrid mesh. > > > > > > > > > > > > > > > > > > > > > To understand how it works, I look at ex5.c file. > > > > > > > > > > > > > > > > > > > > > Unfortunately, there are some things that I do not > > > > > > understand. > > > > > > > > > > > > > > > > > > > > > 1. Why does coneSize lists faces of cells first, then faces > > > > > > of > > > > > > vertices and finally faces of edges (in 2D)? Listing faces > > > > > > of > > > > > > vertices, then faces of edges and finally faces of cells is > > > > > > not > > > > > > simpler? > > > > > > > > > > > > > > > > > > > > This is really about what order you number points. I wanted > > > > > to > > > > > support meshes with just cells and vertices, as well as > > > > > > > > > > > > > > > those with face and edges. I also wanted to be able to > > > > > convert > > > > > between them. Thus it made sense to leave the cell > > > > > > > > > > > > > > > and vertex numbers invariant under this change. I still think > > > > > this > > > > > is > > > > > the best pragmatic alternative. > > > > > > > > > > > > > > > > 2 What does coneOrientations contain? For two > > > > > > counterclockwise > > > > > > oriented triangles sharing an edge e={v0,v1}, I understand > > > > > > that > > > > > > {v0,v1} is the right oriented edge for the second triangle > > > > > > (and > > > > > > e > > > > > > for the first one) but what is the meaning of value -2? I > > > > > > read > > > > > > that > > > > > > it is -(o+1) with o=1 but why does o equal 1 in this case? > > > > > > > > > > > > > > > > > > > > Right now, orientation o = means: > > > > > > > > > > > > > > > : + means traverse in cone order > > > > > > > > > > > > > > > - means traverse in the reverse of cone order > > > > > > > > > > > > > > > : cone point to start iteration on > > > > > > > > > > > > > > > if is -, then start on point -(+1) > > > > > > > > > > > > > > > Thus -2 means start on point 1 and go in reverse order, so > > > > > > > > > > > > > > > for an edge that would be {1, 0} which is what you want. > > > > > > > > > > > > > > > What we should really have is identify a group > > > > > element > > > > > from > > > > > the symmetry > > > > > > > > > > > > > > > group of the point, and indicate inversion. However, > > > > > that > > > > > will > > > > > be a big rewrite > > > > > > > > > > > > > > > and needs to be motivated by applications. > > > > > > > > > > > > > > > Matt > > > > > > > > > > > > > > > > Thank you very much for your help! > > > > > > > > > > > > > > > > > > > > > Best regards, > > > > > > > > > > > > > > > > > > > > > C?dric Doucet > > > > > > > > > > > > > > > > > > > > -- > > > > > > > > > > > > > > > What most experimenters take for granted before they begin > > > > > their > > > > > experiments is infinitely more interesting than any results > > > > > to > > > > > which > > > > > their experiments lead. > > > > > > > > > > > > > > > -- Norbert Wiener > > > > > > > > > > > > > -- > > > > > > What most experimenters take for granted before they begin their > > > experiments is infinitely more interesting than any results to > > > which > > > their experiments lead. > > > > > > -- Norbert Wiener > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Fri Jan 31 10:41:26 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Fri, 31 Jan 2014 10:41:26 -0600 Subject: [petsc-users] How can PETSc configure with MSMPI In-Reply-To: <52EB5936.3010306@gmail.com> References: <52EB0F87.2040208@gmail.com> <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> <52EB5936.3010306@gmail.com> Message-ID: Try: --with-mpi-include=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ R2/Inc --with-mpi-lib=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ R2/Lib/amd64/msmpi.lib Satish On Fri, 31 Jan 2014, Danyang Su wrote: > Hi Barry, > > The configure.log has been attached. I can configure with MPICH2 before. There > are three MPI implementations (MPICH2, Intel MPI and MSMPI) in my computer, > the intel mpi distribution comes along with the installation of Intel Parallel > Studio. The MPICH2 and MSMPI is installed separately. Now I have uninstalled > MPICH2 and there is only MSMPI (with sdk) and Intel MPI distribution. > The system is WIN7 X64 Pro. > > Thanks, > > Danyang > > On 30/01/2014 7:40 PM, Barry Smith wrote: > > We need configure.log > > > > On Jan 30, 2014, at 8:50 PM, Danyang Su wrote: > > > > > Hi All, > > > > > > When configure petsc with msmpi > > > > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco > > > mm --with-openmp --with-mpi-include="/cygdrive/c/Program Files/Microsoft > > > HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog > > > ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" > > > > > > I get the following error > > > > > > --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', > > > '2008', 'R2/Lib/amd64/msmpi.lib'] and > > > --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 > > > R2/Inc'] did not work > > > > > > Thanks, > > > > > > Danyang > > > From tgross at ilsb.tuwien.ac.at Fri Jan 31 10:58:00 2014 From: tgross at ilsb.tuwien.ac.at (Thomas Gross) Date: Fri, 31 Jan 2014 17:58:00 +0100 Subject: [petsc-users] Prometheus vs GAMG for elasticity/plasticity problems In-Reply-To: References: <5963955B-E28F-464A-9A32-6CC3C8A056B8@ilsb.tuwien.ac.at> <87y521tp3x.fsf@jedbrown.org> <87d2jdtlgv.fsf@jedbrown.org> <8761p5tid4.fsf@jedbrown.org> <96E2FBBC-42A0-41DC-93ED-E2B97B2AAA62@ilsb.tuwien.ac.at> <87iot5nosv.fsf@jedbrown.org> <635A16A2-22B4-49DD-B2BD-78909739B8CA@ilsb.tuwien.ac.at> <87r47qi83e.fsf@jedbrown.org> <87wqhhdq5v.fsf@jedbrown.org> Message-ID: <2642982C-774E-4DED-89F2-8F634CFED9C9@ilsb.tuwien.ac.at> Please find enclosed the additional runs: Prometheus: -ksp_type cg -pc_type prometheus -log_summary -ksp_monitor -ksp_view -options_left -out_verbose 2 > Prometheus_verbose2.txt GAMG: -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type richardson -mg_levels_pc_type sor -pc_gamg_verbose 2 > GAMG_Rich_max_it_verbose2.txt -ksp_type cg -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -log_summary -ksp_monitor -ksp_view -options_left mg_levels_ksp_type richardson -mg_levels_pc_type sor -pc_gamg_verbose 2 -pc_gamg_repart true > GAMG_Rich_max_it_verbose2.txt > And is this just a simple cube problem in elasticity as it looks like from your input file name? The input is a cubic trabecular bone structure meshed with isotropic 8 node hexahedral finite elements (see attached cube_05.png). All elements were assigned the same elastic modulus and simulations were performed using small displacement formulation. Best regards, Thomas Am 31.01.2014 um 02:29 schrieb Mark Adams : > > > I meant that GAMG isn't using BAIJ, but Prometheus is. That affects > kernel efficiency. > > > Ah yes, that must be it. > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: cube_05.png Type: image/png Size: 345850 bytes Desc: not available URL: -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: Prometheus_verbose2.txt URL: -------------- next part -------------- An HTML attachment was scrubbed... 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URL: From torquil at gmail.com Fri Jan 31 11:13:25 2014 From: torquil at gmail.com (=?UTF-8?Q?Torquil_Macdonald_S=C3=B8rensen?=) Date: Fri, 31 Jan 2014 18:13:25 +0100 Subject: [petsc-users] Galerkin multigrid coarsening In-Reply-To: <878utxfaen.fsf@jedbrown.org> References: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> <8761p1h104.fsf@jedbrown.org> <52EAAD28.1000607@gmail.com> <878utxfaen.fsf@jedbrown.org> Message-ID: On 30 January 2014 22:05, Jed Brown wrote: > > > I did not have an opportunity to test what happens if I don't set any > > restriction, but I'm hoping it will then use P^T, as before. > > Yes, it will. Only setting the interpolation, and not the restriction, results in a crash for me (with output given at the bottom of this message). Looking at the changed code, is it not the case that if "restrct" is unset, the code will still try to use it in the MatMatMatMult() inside the else-part of the new code? If restrct is not set, it will surely differ from "interpolate" in the tests on lines 628 and 641, and therefore trigger the else-part of the if-else constructs, thereby causing this crash, right? I applied the changes to the "master"-branch, so I'm hoping that is not the reason for this problem. Here is the output I'm getting when only setting the interpolation: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Null argument, when expecting valid pointer! [0]PETSC ERROR: Null Object: Parameter # 1! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development GIT revision: v3.4.3-2428-g0a70bb0 GIT Date: 2014-01-30 13:56:44 -0600 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./timeevolution.exe on a arch-linux2-cxx-debug named enlil.uio.no by tmac Fri Jan 31 18:00:41 2014 [0]PETSC ERROR: Libraries linked from /mn/anatu/cma-u3/tmac/usr/stow/petsc_complex_debug_cpp/lib [0]PETSC ERROR: Configure run at Fri Jan 31 17:54:00 2014 [0]PETSC ERROR: Configure options --prefix=/mn/anatu/cma-u3/tmac/usr/stow/petsc_complex_debug_cpp --with-clanguage=C++ --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=1 --with-superlu=1 --with-superlu-lib=/mn/anatu/cma-u3/tmac/usr/lib/libsuperlu.so --with-superlu-include=/mn/anatu/cma-u3/tmac/usr/include/superlu --with-ptscotch=1 --with-ptscotch-include=/mn/anatu/cma-u3/tmac/usr/include/scotch --with-ptscotch-lib="[/mn/anatu/cma-u3/tmac/usr/lib/libptscotch.so,/mn/anatu/cma-u3/tmac/usr/lib/libptscotcherr.so,/mn/anatu/cma-u3/tmac/usr/lib/libscotch.so,/mn/anatu/cma-u3/tmac/usr/lib/libscotcherr.so]" --with-blas-lib=/mn/anatu/cma-u3/tmac/usr/lib/libsatlas.so --with-lapack-lib=/mn/anatu/cma-u3/tmac/usr/lib/libsatlas.so --with-fortran-interfaces=0 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: MatMatMatMult() line 9069 in /work/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: PCSetUp_MG() line 631 in /work/petsc/src/ksp/pc/impls/mg/mg.c [0]PETSC ERROR: PCSetUp() line 888 in /work/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: KSPSetUp() line 278 in /work/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: main() line 244 in /mn/anatu/cma-u3/tmac/research/sim/prog.cpp Setting both the interpolation and restriction works fine, as I mentioned in the earlier message. Best regards Torquil S?rensen From danyang.su at gmail.com Fri Jan 31 11:23:35 2014 From: danyang.su at gmail.com (Danyang Su) Date: Fri, 31 Jan 2014 09:23:35 -0800 Subject: [petsc-users] How can PETSc configure with MSMPI In-Reply-To: References: <52EB0F87.2040208@gmail.com> <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> <52EB5936.3010306@gmail.com> Message-ID: <52EBDC17.90605@gmail.com> On 31/01/2014 8:41 AM, Satish Balay wrote: > Try: > > --with-mpi-include=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ R2/Inc > --with-mpi-lib=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ R2/Lib/amd64/msmpi.lib ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] and --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc'] did not work ******************************************************************************* It's this due to the blank space in the path? Maybe I can reinstall HPC package to another destination without blank space in the path. Thanks, Danyang > > Satish > > > On Fri, 31 Jan 2014, Danyang Su wrote: > >> Hi Barry, >> >> The configure.log has been attached. I can configure with MPICH2 before. There >> are three MPI implementations (MPICH2, Intel MPI and MSMPI) in my computer, >> the intel mpi distribution comes along with the installation of Intel Parallel >> Studio. The MPICH2 and MSMPI is installed separately. Now I have uninstalled >> MPICH2 and there is only MSMPI (with sdk) and Intel MPI distribution. >> The system is WIN7 X64 Pro. >> >> Thanks, >> >> Danyang >> >> On 30/01/2014 7:40 PM, Barry Smith wrote: >>> We need configure.log >>> >>> On Jan 30, 2014, at 8:50 PM, Danyang Su wrote: >>> >>>> Hi All, >>>> >>>> When configure petsc with msmpi >>>> >>>> ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' >>>> --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco >>>> mm --with-openmp --with-mpi-include="/cygdrive/c/Program Files/Microsoft >>>> HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog >>>> ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" >>>> >>>> I get the following error >>>> >>>> --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', >>>> '2008', 'R2/Lib/amd64/msmpi.lib'] and >>>> --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 >>>> R2/Inc'] did not work >>>> >>>> Thanks, >>>> >>>> Danyang >> >> -------------- next part -------------- Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Fri Jan 31 08:59:25 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --download-f-blas-lapack --with-threadcomm --with-openmp --with-mpi-include="/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" --useThreads=0 Working directory: /cygdrive/c/cygwin/packages/petsc-dev Machine platform: ('CYGWIN_NT-6.1-WOW64', 'nwmop', '1.7.22(0.268/5/3)', '2013-07-22 17:06', 'i686', '') Python version: 2.7.3 (default, Dec 18 2012, 13:50:09) [GCC 4.5.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py:823) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:823) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gdb...not found Checking for program /cygdrive/c/Windows/system32/gdb...not found Checking for program /cygdrive/c/Windows/gdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gdb...not found Checking for program /cygdrive/c/MinGW/bin/gdb...found Defined make macro "GDB" to "/cygdrive/c/MinGW/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dbx...not found Checking for program /cygdrive/c/Windows/system32/dbx...not found Checking for program /cygdrive/c/Windows/dbx...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dbx...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dbx...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dbx...not found Checking for program /cygdrive/c/MinGW/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dbx...not found Checking for program /home/dsu/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/xdb...not found Checking for program /cygdrive/c/Windows/system32/xdb...not found Checking for program /cygdrive/c/Windows/xdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/xdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/xdb...not found Checking for program /cygdrive/c/MinGW/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/xdb...not found Checking for program /home/dsu/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dsymutil...not found Checking for program /cygdrive/c/Windows/system32/dsymutil...not found Checking for program /cygdrive/c/Windows/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dsymutil...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dsymutil...not found Checking for program /cygdrive/c/MinGW/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dsymutil...not found Checking for program /home/dsu/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/git...not found Checking for program /cygdrive/c/Windows/system32/git...not found Checking for program /cygdrive/c/Windows/git...not found Checking for program /cygdrive/c/Windows/System32/Wbem/git...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/git...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/git...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/git...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/git...not found Checking for program /cygdrive/c/MinGW/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/git...not found Checking for program /home/dsu/git...not found ================================================================================ TEST configureMercurial from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.5.2) ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/cvs...not found Checking for program /cygdrive/c/Windows/system32/cvs...not found Checking for program /cygdrive/c/Windows/cvs...not found Checking for program /cygdrive/c/Windows/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/cvs...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/cvs...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/cvs...not found Checking for program /cygdrive/c/MinGW/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/cvs...not found Checking for program /home/dsu/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/svn...not found Checking for program /cygdrive/c/Windows/system32/svn...not found Checking for program /cygdrive/c/Windows/svn...not found Checking for program /cygdrive/c/Windows/System32/Wbem/svn...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/svn...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/svn...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/svn...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/svn...not found Checking for program /cygdrive/c/MinGW/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.8.3 ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/autoreconf...not found Checking for program /cygdrive/c/Windows/system32/autoreconf...not found Checking for program /cygdrive/c/Windows/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/Wbem/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/autoreconf...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/autoreconf...not found Checking for program /cygdrive/c/MinGW/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/autoreconf...not found Checking for program /home/dsu/autoreconf...not found ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-yKlxvD All intermediate test results are stored in /tmp/petsc-yKlxvD/config.programs Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-yKlxvD/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-yKlxvD/config.programs/diff1" "/tmp/petsc-yKlxvD/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/dsu/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jan, 30, 2014" #define PETSC_VERSION_GIT "v3.4.3-2414-g135c7cd" #define PETSC_VERSION_DATE_GIT "2014-01-29 17:41:55 -0700" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/cygdrive/c/cygwin/packages/petsc-dev" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-mswin-c-debug"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-debug/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1500) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1500) **** printenv **** BIN_ROOT=C:\Program Files (x86)\Intel\Composer XE 2013\bin\ LIB=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\lib\x64;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\lib\intel64;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64; VS100COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\ COMPUTERNAME=NWMOP SCRIPT_NAME=compilervars_arch.bat ADVISOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Advisor XE 2013\.\ !C:=C:\Program Files (x86)\Intel\Composer XE 2013 WIN_TITLE_ARCH=Intel(R) 64 PRODUCT_NAME=Intel Composer XE 2013 CCP_INC=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\Include\ INFOPATH=/usr/local/info:/usr/share/info:/usr/info: SHELL=/bin/bash CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files USERDOMAIN=nwmop FrameworkVersion64=v4.0.30319 MANPATH=/usr/local/man:/usr/share/man:/usr/man: FrameworkDir=C:\Windows\Microsoft.NET\Framework64 CCP_LIB64=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\Lib\amd64\ ARCH_PATH_MPI=em64t KMP_AFFINITY=verbose,granularity=thread,compact COMSPEC=C:\Windows\system32\cmd.exe WIN_TITLE_VS=Visual Studio 2010 ARCH_PATH=intel64 TARGET_ARCH=intel64 MOZ_PLUGIN_PATH=C:\Program Files (x86)\PDFlite\ HOMEDRIVE=C: MKLROOT=C:\Program Files (x86)\Intel\Composer XE 2013\mkl FrameworkVersion=v4.0.30319 SYSTEMDRIVE=C: HOSTNAME=nwmop PETSC_ARCH=arch-mswin-c-debug PROCESSOR_LEVEL=6 OS=Windows_NT C_INCLUDE_PATH=C:\MinGW\include PRODUCT_NAME_FULL=Intel(R) Composer XE 2013 Update 5 (package 198) TARGET_VS=vs2010 INTEL_DEV_REDIST=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\ IFORT_COMPILER14=C:\Program Files (x86)\Intel\Composer XE 2013 SP1\ CommandPromptType=Native USER=dsu IFORT_COMPILER13=C:\Program Files (x86)\Intel\Composer XE 2013\ SYSTEMROOT=C:\Windows PS1=\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ tmp=C:\Users\dsu\AppData\Local\Temp TEMP=/tmp SHLVL=1 VISUALSVN_SERVER=C:\Program Files (x86)\VisualSVN Server\ PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev HOMEPATH=\Users\dsu WindowsSdkDir=C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\ ROOT=C:\Program Files (x86)\Intel\Composer XE 2013 LOGONSERVER=\\NWMOP CCP_JOBTEMPLATE=Default C_TARGET_ARCH=intel64 MSVS_VAR_SCRIPT="C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\..\..\VC\vcvarsall.bat" PRINTER=HP Color LaserJet Pro MFP M177 PCLmS INSPECTOR_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ SESSIONNAME=Console INCLUDE=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\include;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\include; PATH_PHAST=C:\Program Files (x86)\USGS\phast-2.4.1-7430\\bin APPDATA=C:\Users\dsu\AppData\Roaming OMP_NUM_THREADS=6 VBOX_INSTALL_PATH=C:\Program Files\Oracle\VirtualBox\ CCP_HOME=C:\Program Files\Microsoft HPC Pack 2008 R2\ TMP=/tmp PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ INTEL_LICENSE_FILE=C:\Program Files (x86)\Common Files\Intel\Licenses COMMONPROGRAMFILES=C:\Program Files (x86)\Common Files HOME=/home/dsu MIC_LD_LIBRARY_PATH=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\compiler\lib\mic LANG=en_US.UTF-8 LIBRARY_PATH=C:\MinGW\lib ProgramData=C:\ProgramData PROCESSOR_ARCHITECTURE=x86 ALLUSERSPROFILE=C:\ProgramData _=./configure BUNDLE_NAME=Intel(R) Parallel Studio XE 2013 ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=dsu FrameworkDIR64=C:\Windows\Microsoft.NET\Framework64 PROMPT=$P$G PETSC_DIR2=/cygdrive/c/cygwin/packages/petsc-3.4.3 PETSC_ARCH3=arch-mswin-c-optimized INSPECTOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC CommonProgramW6432=C:\Program Files\Common Files WINDIR=C:\Windows Framework35Version=v3.5 temp=C:\Users\dsu\AppData\Local\Temp Platform=X64 NUMBER_OF_PROCESSORS=12 CCP_LIB32=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\Lib\i386\ PROCESSOR_ARCHITEW6432=AMD64 WIN_TITLE=Intel Composer XE 2013 Intel(R) 64 Visual Studio 2010 TARGET_VS_ARCH=amd64 MSMPI_INC=C:\Program Files\Microsoft HPC Pack 2008 R2\Inc\ PUBLIC=C:\Users\Public USERPROFILE=C:\Users\dsu LIBPATH=C:\Windows\Microsoft.NET\Framework64\v4.0.30319;C:\Windows\Microsoft.NET\Framework64\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64; PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 45 Stepping 7, GenuineIntel PROGRAMFILES=C:\Program Files (x86) PROCESSOR_REVISION=2d07 PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32:/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/TEC100/BIN:/cygdrive/c/Program Files (x86)/CMake 2.8/bin:/cygdrive/c/Program Files/doxygen/bin:/cygdrive/c/Program Files (x86)/Graphviz 2.28/bin:/cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin:/cygdrive/c/MinGW/bin:/cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/VisualSVN/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt TERM=cygwin TZ=America/Vancouver CCP_SDK=C:\Program Files\Microsoft HPC Pack 2008 R2 SDK\ VSINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\ VTUNE_AMPLIFIER_XE_2013_DIR=C:\Program Files (x86)\Intel\VTune Amplifier XE 2013\ LOCALAPPDATA=C:\Users\dsu\AppData\Local MSMPI_LIB64=C:\Program Files\Microsoft HPC Pack 2008 R2\Lib\amd64\ TEC100HOME=C:\Program Files\TEC100 FP_NO_HOST_CHECK=NO OLDPWD=/home/dsu PWD=/cygdrive/c/cygwin/packages/petsc-dev MSMPI_LIB32=C:\Program Files\Microsoft HPC Pack 2008 R2\Lib\i386\ VCINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1507) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1472) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1491) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1491) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:400) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:400) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:410) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:410) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:526) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-yKlxvD/config.setCompilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:561) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:561) Locate a functional C preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.SET\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:595) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:595) Locate a functional CUDA compiler Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:633) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:633) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:736) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:736) Locate a functional Cxx compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXX" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:774) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:774) Locate a functional Cxx preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXXCPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\conffix.h" extern "C" { } #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.SET\\conftest.cc" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\cstdlib" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" namespace vc_attributes { #line 55 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum YesNoMaybe { No = 0x0fff0001, Maybe = 0x0fff0010, Yes = 0x0fff0100 }; typedef enum YesNoMaybe YesNoMaybe; enum AccessType { NoAccess = 0, Read = 1, Write = 2, ReadWrite = 3 }; typedef enum AccessType AccessType; [repeatable] [source_annotation_attribute( Parameter )] struct PreAttribute { PreAttribute(); #line 85 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostAttribute { PostAttribute(); #line 116 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( Parameter )] struct FormatStringAttribute { FormatStringAttribute(); #line 147 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [repeatable] [source_annotation_attribute( ReturnValue )] struct InvalidCheckAttribute { InvalidCheckAttribute(); #line 159 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" long Value; }; [source_annotation_attribute( Method )] struct SuccessAttribute { SuccessAttribute(); #line 169 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreBoundAttribute { PreBoundAttribute(); #line 180 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostBoundAttribute { PostBoundAttribute(); #line 190 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreRangeAttribute { PreRangeAttribute(); #line 200 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostRangeAttribute { PostRangeAttribute(); #line 212 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" }; #line 222 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef ::vc_attributes::YesNoMaybe SA_YesNoMaybe; const ::vc_attributes::YesNoMaybe SA_Yes = ::vc_attributes::Yes; const ::vc_attributes::YesNoMaybe SA_No = ::vc_attributes::No; const ::vc_attributes::YesNoMaybe SA_Maybe = ::vc_attributes::Maybe; typedef ::vc_attributes::AccessType SA_AccessType; const ::vc_attributes::AccessType SA_NoAccess = ::vc_attributes::NoAccess; const ::vc_attributes::AccessType SA_Read = ::vc_attributes::Read; const ::vc_attributes::AccessType SA_Write = ::vc_attributes::Write; const ::vc_attributes::AccessType SA_ReadWrite = ::vc_attributes::ReadWrite; typedef ::vc_attributes::PreAttribute SA_Pre; typedef ::vc_attributes::PostAttribute SA_Post; typedef ::vc_attributes::FormatStringAttribute SA_FormatString; typedef ::vc_attributes::InvalidCheckAttribute SA_InvalidCheck; typedef ::vc_attributes::SuccessAttribute SA_Success; typedef ::vc_attributes::PreBoundAttribute SA_PreBound; typedef ::vc_attributes::PostBoundAttribute SA_PostBound; typedef ::vc_attributes::PreRangeAttribute SA_PreRange; typedef ::vc_attributes::PostRangeAttribute SA_PostRange; #line 266 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:883) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:883) Locate a functional Fortran compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "FC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:902) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Make sure fortran comment "!" works Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:965) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:965) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -PIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting C linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -fPIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting C linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected C compiler flag -fPIC because linker cannot handle it Trying C compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -KPIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting C linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Trying C compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -qpic /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting C linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected C compiler flag -qpic because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -PIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting Cxx linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -fPIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting Cxx linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected Cxx compiler flag -fPIC because linker cannot handle it Trying Cxx compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -KPIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting Cxx linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Trying Cxx compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -qpic /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting Cxx linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected Cxx compiler flag -qpic because linker cannot handle it Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -PIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/PIC' Rejecting FC linker flag -PIC due to ifort: command line warning #10006: ignoring unknown option '/PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -fPIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejecting FC linker flag -fPIC due to ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejected FC compiler flag -fPIC because linker cannot handle it Trying FC compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -KPIC /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejecting FC linker flag -KPIC due to ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Trying FC compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -qpic /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/qpic' Rejecting FC linker flag -qpic due to ifort: command line warning #10006: ignoring unknown option '/qpic' Rejected FC compiler flag -qpic because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- c Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/tmp/petsc-yKlxvD/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/tmp/petsc-yKlxvD/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar cr /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/tmp/petsc-yKlxvD/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/tmp/petsc-yKlxvD/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar -X64 cr /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar -X64 cr /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar -X64 cr /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a -P512" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib -a -P512 /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 25600 Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a /tmp/petsc-yKlxvD/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-yKlxvD/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/tmp/petsc-yKlxvD/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/tmp/petsc-yKlxvD/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "-a" Defined make macro "AR_LIB_SUFFIX" to "lib" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1208) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1208) Check that the linker can produce shared libraries Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -shared /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/libconftest.so /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-dynamic'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -dynamic /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-dynamic' Rejecting C linker flag -dynamic due to cl : Command line warning D9002 : ignoring unknown option '-dynamic' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/libconftest.so /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-qmkshrobj'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -qmkshrobj /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Rejecting C linker flag -qmkshrobj due to cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/libconftest.so /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -shared /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/libconftest.dll /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib using flags [] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-yKlxvD/config.setCompilers/libconftest.lib /tmp/petsc-yKlxvD/config.setCompilers/conftest.o ; /usr/bin/true /tmp/petsc-yKlxvD/config.setCompilers/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/tmp/petsc-yKlxvD/config.setCompilers -lconftest Using shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib with flags [] and library extension lib Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1286) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1286) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying C linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-rpath, Trying C linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting C linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected C linker flag -R Trying C linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting C linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected C linker flag -rpath Trying C linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-R, Popping language C Pushing language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying Cxx linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-rpath, Trying Cxx linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting Cxx linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected Cxx linker flag -R Trying Cxx linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting Cxx linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected Cxx linker flag -rpath Trying Cxx linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-R, Popping language Cxx Pushing language FC Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying FC linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-rpath, Trying FC linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting FC linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejected FC linker flag -R Trying FC linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 40192 stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting FC linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected FC linker flag -rpath Trying FC linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-R, Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1370) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1370) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-yKlxvD/config.headers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Dynamic loading disabled since dlfcn.h was missing ================================================================================ TEST output from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1416) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Output module data as defines and substitutions Substituting "CC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) ================================================================================ TEST configureSerializedFunctions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -MT Trying C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -wd4996 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Z7 Popping language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -MT Trying Cxx compiler flag -GR Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -GR Trying Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Z7 Trying Cxx compiler flag -Zm200 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Zm200 Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nIntel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Z7 Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-yKlxvD/config.compilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static __inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static __inline Popping language C Defined "C_STATIC_INLINE" to "static __inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ================================================================================ TEST checkCLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -v -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' Popping language C compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Libraries needed to link C code with another linker: [] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 -MMD -MP /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 -MMD /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD Trying C compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 -xMMD /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 -qmakedep=gcc /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 -MD /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -MD because no dependency file (/tmp/petsc-yKlxvD/config.setCompilers/conftest.d) was generated Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD -MP /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD Trying Cxx compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -xMMD /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -qmakedep=gcc /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MD /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected Cxx compiler flag -MD because no dependency file (/tmp/petsc-yKlxvD/config.setCompilers/conftest.d) was generated Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 -MMD -MP /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 -MMD /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 -xMMD /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xMMD' Successful compile: Source: program main end Rejecting compiler flag -xMMD due to ifort: command line warning #10006: ignoring unknown option '/xMMD' Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 -qmakedep=gcc /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Successful compile: Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 -MD /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10121: overriding '/MT' with '/MD' Successful compile: Source: program main end Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-yKlxvD/config.setCompilers/conftest.d) was generated Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -+ /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -+ due to nonzero status from link Rejecting compiler flag -+ due to cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -x cxx -tlocal /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx Possible ERROR while running compiler: exit code 32512 stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxxSource: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -x cxx -tlocal due to nonzero status from link Rejecting compiler flag -x cxx -tlocal due to Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -Kc++ /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -Kc++ due to nonzero status from link Rejecting compiler flag -Kc++ due to cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag -TP Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -v -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg LINK compilers: Unknown arg LINK compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg found compilers: Unknown arg found compilers: Checking arg or compilers: Unknown arg or compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg built compilers: Unknown arg built compilers: Checking arg by compilers: Unknown arg by compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg last compilers: Unknown arg last compilers: Checking arg incremental compilers: Unknown arg incremental compilers: Checking arg link; compilers: Unknown arg link; compilers: Checking arg performing compilers: Unknown arg performing compilers: Checking arg full compilers: Unknown arg full compilers: Checking arg link compilers: Unknown arg link compilers: Libraries needed to link Cxx code with another linker: [] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.o /tmp/petsc-yKlxvD/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type unchanged with code void d1chk(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.o /tmp/petsc-yKlxvD/config.compilers/confc.o stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type caps with code void D1CHK(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void D1CHK(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.o /tmp/petsc-yKlxvD/config.compilers/confc.o Popping language FC compilers: Fortran name mangling is caps Defined "HAVE_FORTRAN_CAPS" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-yKlxvD/config.compilers/conftest.o /tmp/petsc-yKlxvD/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -cpp /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -cpp due to nonzero status from link Rejecting compiler flag -cpp due to ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -xpp=cpp /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -xpp=cpp due to nonzero status from link Rejecting compiler flag -xpp=cpp due to ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -F /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line error: option '/F' is ambiguous Possible ERROR while running compiler: exit code 256 stdout: ifort: command line error: option '/F' is ambiguousSource: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -F due to nonzero status from link Rejecting compiler flag -F due to ifort: command line error: option '/F' is ambiguous PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -Cpp /tmp/petsc-yKlxvD/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -Cpp due to nonzero status from link Rejecting compiler flag -Cpp due to ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag -fpp Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -fpp -DTesting /tmp/petsc-yKlxvD/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -V stdout: ifort: command line error: no files specified; for help type "ifort /help" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -v -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/v' C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mGLOB_microsoft_version=1600 "-mGLOB_options_string=-v -MT -Z7 -fpp -nologo -FeC:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 -mP3OPT_defaultlibs_omit=FALSE -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF -mP3OPT_defaultlibs_f90_port -mP1OPT_check_stack -mP3OPT_emit_line_numbers -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 -mDEBUG_no_pdb=TRUE -mP3OPT_inline_alloca -mGLOB_routine_pointer_size_64 -mGLOB_split_functions=0 -mIPOPT_activate -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d92 -mCG_bnl_movbe=T -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=0 -mP2OPT_offload_unique_var_string=6268262542 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=C:\cygwin\tmp\6268slis4 -mIPOPT_mo_global_data "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe" "-debug" "-pdb:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.pdb" "-subsystem:console" "-nologo" "C:\cygwin\tmp\conftest.obj"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_6268.obj -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=C:\cygwin\tmp\6268tempfile2 -mGLOB_os_target=GLOB_OS_TARGET_WINNT -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_6268.obj -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true C:\cygwin\tmp\conftest.obj -mIPOPT_object_files=T -mIPOPT_assembly_files=C:\cygwin\tmp\6268alis3 link -out:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe -debug -pdb:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.pdb -subsystem:console -nologo C:\cygwin\tmp\conftest.obj Popping language FC compilers: Checking arg ifort: compilers: Unknown arg ifort: compilers: Checking arg command compilers: Unknown arg command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg #10006: compilers: Unknown arg #10006: compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Unknown arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Checking arg -mP1OPT_version=13.1-intel64 compilers: Unknown arg -mP1OPT_version=13.1-intel64 compilers: Checking arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Unknown arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mGLOB_microsoft_version=1600 compilers: Unknown arg -mGLOB_microsoft_version=1600 compilers: Checking arg "-mGLOB_options_string=-v compilers: Unknown arg "-mGLOB_options_string=-v compilers: Checking arg -MT compilers: Unknown arg -MT compilers: Checking arg -Z7 compilers: Unknown arg -Z7 compilers: Checking arg -fpp compilers: Unknown arg -fpp compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg -FeC:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -FeC:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Handling HPUX list of directories: \PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Checking arg -mP3OPT_defaultlibs_omit=FALSE compilers: Unknown arg -mP3OPT_defaultlibs_omit=FALSE compilers: Checking arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Unknown arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Checking arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Unknown arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Checking arg -mP3OPT_defaultlibs_f90_port compilers: Unknown arg -mP3OPT_defaultlibs_f90_port compilers: Checking arg -mP1OPT_check_stack compilers: Unknown arg -mP1OPT_check_stack compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Checking arg -mDEBUG_no_pdb=TRUE compilers: Unknown arg -mDEBUG_no_pdb=TRUE compilers: Checking arg -mP3OPT_inline_alloca compilers: Unknown arg -mP3OPT_inline_alloca compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_split_functions=0 compilers: Unknown arg -mGLOB_split_functions=0 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d92 compilers: Unknown arg -mGLOB_product_id_code=0x22006d92 compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=0 compilers: Unknown arg -mGLOB_offload_mode=0 compilers: Checking arg -mP2OPT_offload_unique_var_string=6268262542 compilers: Unknown arg -mP2OPT_offload_unique_var_string=6268262542 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Unknown arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=C:\cygwin\tmp\6268slis4 compilers: Unknown arg -mIPOPT_source_files_list=C:\cygwin\tmp\6268slis4 compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe compilers: Checking arg "-debug" compilers: Unknown arg -debug compilers: Checking arg "-pdb:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.pdb" compilers: Unknown arg -pdb:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg "-subsystem:console" compilers: Unknown arg -subsystem:console compilers: Checking arg "-nologo" compilers: Unknown arg -nologo compilers: Checking arg "C:\cygwin\tmp\conftest.obj"" compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_6268.obj compilers: Unknown arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_6268.obj compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\6268tempfile2 compilers: Unknown arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\6268tempfile2 compilers: Checking arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Unknown arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Checking arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Unknown arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Checking arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_6268.obj compilers: Unknown arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_6268.obj compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=C:\cygwin\tmp\6268alis3 compilers: Unknown arg -mIPOPT_assembly_files=C:\cygwin\tmp\6268alis3 compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg -out:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg -out:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -debug compilers: Unknown arg -debug compilers: Checking arg -pdb:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.pdb compilers: Unknown arg -pdb:C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg -subsystem:console compilers: Unknown arg -subsystem:console compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Libraries needed to link Fortran code with the C linker: ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.setCompilers/conftest.exe Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void foo(void){D1CHK();} Popping language Cxx Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void D1CHK(void){return;} Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.o /tmp/petsc-yKlxvD/config.compilers/cxxobj.o /tmp/petsc-yKlxvD/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Cygwin detected: ignoring HAVE_F90_2PTR_ARG test ================================================================================ TEST checkFortranModuleInclude from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.compilers/conftest.exe -I/tmp/petsc-yKlxvD/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.o /tmp/petsc-yKlxvD/config.compilers/configtest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -module /tmp/petsc-yKlxvD/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Possible ERROR while running compiler: exit code 32512 Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.compilers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -module:/tmp/petsc-yKlxvD/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1367) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1367) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.headers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.headers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.headers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.o Executing: /tmp/petsc-yKlxvD/config.headers/conftest.exe Executing: /tmp/petsc-yKlxvD/config.headers/conftest.exe Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 5 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" ================================================================================ TEST checkSysWait from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.headers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } ================================================================================ TEST checkTime from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.headers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } ================================================================================ TEST checkMath from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\math.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MATH_H" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.headers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.headers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _USE_MATH_DEFINES 1 #include int main() { double pi = M_PI; if (pi); ; return 0; } Defined "_USE_MATH_DEFINES" to "1" Activated Windows math #defines, like M_PI ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 81 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\malloc.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\Direct.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DIRECT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 89 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #pragma once #line 25 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #pragma once #line 49 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 61 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(push) #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(disable:4001) #line 24 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma once #line 181 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 194 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 195 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 199 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 207 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 208 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 216 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 217 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 224 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 226 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 228 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 230 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 232 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 235 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 236 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 245 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 249 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 253 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 257 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 261 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 265 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 267 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(pop) #line 274 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 275 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 277 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma once #line 29 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 100 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 104 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 108 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 112 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 116 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 122 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 127 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 128 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4116) #line 135 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 136 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 137 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4514) #pragma warning(disable:4103) #line 144 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(push) #line 147 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4001) #pragma warning(disable:4201) #pragma warning(disable:4214) #line 151 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\excpt.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\dos.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DOS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #pragma once #line 17 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 35 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 36 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 37 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 88 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 103 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 145 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\setjmp.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\limits.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\fcntl.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 117 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\io.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 125 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdint.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\float.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\search.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.headers/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.headers -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.c(4) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_SIZE, using default 32768 Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_LINESIZE, using default 32 Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE6E0A~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_ASSOC, using default 2 Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-yKlxvD/config.functions Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Executing: /tmp/petsc-yKlxvD/config.functions/conftest.exe Executing: /tmp/petsc-yKlxvD/config.functions/conftest.exe ================================================================================ TEST checkSysinfo from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkVPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_VPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-yklxvd\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVFPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_VFPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-yklxvd\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVSNPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE__VSNPRINTF" to "1" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.functions/conftest.cc stdout: conftest.cc c:\cygwin\tmp\petsc-yklxvd\config.functions\conftest.cc(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; _vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx ================================================================================ TEST checkNanosleep from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union type Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union typeSource: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Compile failed inside link ================================================================================ TEST checkSignalHandlerType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.functions/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all types Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all typesSource: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-yklxvd\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-yklxvd\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-yklxvd\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-yklxvd\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; __va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkClassify from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [rand getdomainname _sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [rand] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_RAND" to "1" Checking for functions [getdomainname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE__SLEEP" to "1" Checking for functions [snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [realpath] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [bzero _getcwd getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [bzero] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE__GETCWD" to "1" Checking for functions [getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [uname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE__LSEEK" to "1" Checking for functions [sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [_access lseek usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE__ACCESS" to "1" Checking for functions [lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LSEEK" to "1" Checking for functions [usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [_intel_fast_memset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlclose] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [clock get_nprocs access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_CLOCK" to "1" Checking for functions [get_nprocs] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [_snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE__SNPRINTF" to "1" Checking for functions [dlerror] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externalsChecking for functions [fork getpagesize sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [fork] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getpagesize] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [memalign] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_GETCWD" to "1" Checking for functions [gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externalsChecking for functions [gethostbyname gettimeofday readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [gethostbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gettimeofday] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigaction] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [dlopen drand48 socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [dlopen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [drand48] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_MEMMOVE" to "1" Checking for functions [signal] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_SIGNAL" to "1" Checking for functions [popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [getrusage] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [times] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_TIME" to "1" Checking for functions [sysctlbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Defined "HAVE_STRICMP" to "1" ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFeatureTestMacros from PETSc.utilities.featureTestMacros(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from PETSc.utilities.featureTestMacros(config/PETSc/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST check_siginfo_t from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-yKlxvD/config.types Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found ================================================================================ TEST check__int64 from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } Typedefed "int" to "mode_t" Checking for type: off_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } Typedefed "int" to "int32_t" ================================================================================ TEST checkPID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } Typedefed "int" to "pid_t" ================================================================================ TEST checkUID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.types\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.TYP\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.TYP\\conftest.c" Defined "uid_t" to "int" Defined "gid_t" to "int" ================================================================================ TEST checkSignal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ================================================================================ TEST checkCxxComplex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.types -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/config.types/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-yKlxvD/config.types/conftest.o Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.types -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:150) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:150) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.types -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.types/conftest.F stdout: C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.F(3): warning #7319: This argument's data type is incompatible with this intrinsic procedure; procedure assumed EXTERNAL. [DREAL] d = dreal(3.0) ----------------^ Successful compile: Source: program main double precision d d = dreal(3.0) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:158) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:158) Checks for working const, and if not found defines it to empty string Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-yklxvd\config.types\conftest.c(25) : warning C4700: uninitialized local variable 'x' used c:\cygwin\tmp\petsc-yklxvd\config.types\conftest.c(30) : warning C4700: uninitialized local variable 't' used c:\cygwin\tmp\petsc-yklxvd\config.types\conftest.c(46) : warning C4700: uninitialized local variable 'b' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:214) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:214) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { /* Are we little or big endian? From Harbison&Steele. */ union { long l; char c[sizeof(long)]; } u; u.l = 1; exit(u.c[sizeof(long) - 1] == 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:318) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:318) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.types/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Executing: /tmp/petsc-yKlxvD/config.types/conftest.exe Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:364) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:364) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-yKlxvD/config.libraries Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST checkMath from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:250) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:250) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:266) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:266) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: erf() not found ================================================================================ TEST checkMathTgamma from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:275) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:275) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: tgamma() not found ================================================================================ TEST checkMathFenv from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:284) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:284) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Compile failed inside link Popping language C Warning: with FE_DFL_ENV not found ================================================================================ TEST checkCompression from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:292) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:292) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -lz stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Popping language C Checking for functions [compress uncompress] in library ['zlib.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o zlib.lib stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Popping language C Warning: No compression library found ================================================================================ TEST checkRealtime from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:313) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:313) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:329) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:329) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -ldl stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Popping language C Checking for header: dlfcn.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.headers /tmp/petsc-yKlxvD/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-yklxvd\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6E0A~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6E0A~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureTimers from PETSc.utilities.timer(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for functions [MPI_CRAY_barrier] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); static void _check_MPI_CRAY_barrier() { MPI_CRAY_barrier(); } int main() { _check_MPI_CRAY_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:39) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:39) Checks for limits All intermediate test results are stored in /tmp/petsc-yKlxvD/PETSc.utilities.missing Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:49) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:49) Checks if u_short is undefined Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/config.libraries -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } Defined "NEEDS_UTYPE_TYPEDEFS" to "1" ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:55) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:55) Checks for SOCKETS Checking for functions [socket] in library ['Ws2_32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_socket() { socket(0,0,0);; } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o Ws2_32.lib Defined "HAVE_LIBWS2_32" to "1" Popping language C Adding ['Ws2_32.lib'] to LIBS Defined "HAVE_WINSOCK2_H" to "1" Defined "HAVE_SOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { closesocket(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o Ws2_32.lib Defined "HAVE_CLOSESOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { WSAGetLastError(); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_WSAGETLASTERROR" to "1" ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:75) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:75) Check for missing signals, and define MISSING_ if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Defined "MISSING_SIGALRM" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Defined "MISSING_SIGBUS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Defined "MISSING_SIGCHLD" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Defined "MISSING_SIGCONT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Defined "MISSING_SIGHUP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Defined "MISSING_SIGKILL" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Defined "MISSING_SIGPIPE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Defined "MISSING_SIGQUIT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Defined "MISSING_SIGSTOP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Defined "MISSING_SIGSYS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Defined "MISSING_SIGTRAP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Defined "MISSING_SIGTSTP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Defined "MISSING_SIGURG" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Defined "MISSING_SIGUSR1" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } Defined "MISSING_SIGUSR2" to "1" ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:92) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:92) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Added prototype #include int getdomainname(char *, size_t); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Added prototype #include int getdomainname(char *, size_t); to language extern C Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:117) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:117) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Added prototype double drand48(void); to language C Added prototype void srand48(long int); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-yKlxvD/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6E0A~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Compile failed inside link Added prototype double drand48(void); to language extern C Added prototype void srand48(long int); to language extern C Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:141) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:141) ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.libraries -I/tmp/petsc-yKlxvD/config.types -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-yKlxvD/config.libraries/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [GET_COMMAND_ARGUMENT] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GET_COMMAND_ARGUMENT(); static void _check_GET_COMMAND_ARGUMENT() { GET_COMMAND_ARGUMENT(); } int main() { _check_GET_COMMAND_ARGUMENT();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [GETARG] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GETARG(); static void _check_GETARG() { GETARG(); } int main() { _check_GETARG();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE6E0A~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [ipxfargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [f90_unix_MP_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [iargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [GETARG at 16] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')'Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG at 16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) GETARG at 16_will_always_fail_with_ENOSYS(); #else GETARG at 16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.functions/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE6E0A~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST configureMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:61) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:61) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gmake...not found Checking for program /cygdrive/c/Windows/system32/gmake...not found Checking for program /cygdrive/c/Windows/gmake...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gmake...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gmake...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gmake...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gmake...not found Checking for program /cygdrive/c/MinGW/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/gmake...not found Checking for program /home/dsu/gmake...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:79) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:79) Check for GNU make Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: $xqB [^_] [^_] 3S$3C [^_] ,[^_] <-tL<@t<<+uI ,[^_] ue;} <@u. [^_] [^] r.v(1 [^_] [^_] L[^_] [^_] [^_] [^_] t+;5 [^_] [^_] <[^_] $/*B $L*B <[^_] [^_] [^_] $T+B $T+B $T+B $4+B ,[^_] [^_] ,[^_] $l,B S$;V$ [^_] $4,B $l-B $H-B [^_] <[^_] ,[^_] <[^_] $T.B $G.B $`/B $e0B $z0B $|1B $(/B @[^] $P0B $80B $`1B $<1B <[^_] 2[^_] 2^_] 2^_] 2[^_] 2^_] 2^_] ,[^_] ;] [^_] [^_] t6;} [^_] \[^_] [^_] $,7B $h6B $@6B $@6B WVSP $\7B [^_] $08B $T8B $|8B $U9B [^] $h9B [^_] [^_] <\t__B 8.t. $m`B $V`B $+5P $(`B [^_] [^_] $$aB $HaB $5^B [^_] L[^_ $2aB L[^_] $5^B WVSP [^_] [^_] [^_] BN at t [^] [^_] ;-tc $4bB $,bB $DbB S$tL @N at u [^_] [^_] $$cB $tcB [^_] $CgB $DcB $lB ,[^_] $RlB t.<$u $ZlB ,[^_] [^_] [^_] [^_] [^_] t.;5 WVS1 8.t( [^_] [^_] tj=t ,[^_] ,[^_] $(){}$`^~! cyggcc_s-1.dll __register_frame_info cyggcj-11.dll _Jv_RegisterClasses __deregister_frame_info attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES Recipe has too many lines (%ud) $(MAKE) ${MAKE} kill # recipe to execute (built-in): (from `%s', line %lu): %c%.*s .SUFFIXES SUFFIXES ARFLAGS OBJC CHECKOUT,v +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi WEAVE weave CWEAVE cweave TANGLE tangle CTANGLE ctangle rm -f LINK.o $(CC) $(LDFLAGS) $(TARGET_ARCH) COMPILE.c $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t YACC.m LEX.m COMPILE.f $(FC) $(FFLAGS) $(TARGET_ARCH) -c LINK.f $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.F $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c LINK.r $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.def $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) COMPILE.mod $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) COMPILE.p $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.p $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.s $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.s $(AS) $(ASFLAGS) $(TARGET_MACH) LINK.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F PREPROCESS.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F LINT.c $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< SCCS/s.% $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ .cpp $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.m) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ .mod $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o $(COMPILE.c) $(OUTPUT_OPTION) $< .cc.o $(COMPILE.cc) $(OUTPUT_OPTION) $< .C.o $(COMPILE.C) $(OUTPUT_OPTION) $< .cpp.o $(COMPILE.cpp) $(OUTPUT_OPTION) $< .f.o $(COMPILE.f) $(OUTPUT_OPTION) $< .m.o $(COMPILE.m) $(OUTPUT_OPTION) $< .p.o $(COMPILE.p) $(OUTPUT_OPTION) $< .F.o $(COMPILE.F) $(OUTPUT_OPTION) $< .r.o $(COMPILE.r) $(OUTPUT_OPTION) $< .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c .l.ln @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c .y.c $(YACC.y) $< mv -f y.tab.c $@ .l.c @$(RM) $@ $(LEX.l) $< > $@ .ym.m $(YACC.m) $< mv -f y.tab.c $@ .lm.m @$(RM) $@ $(LEX.m) $< > $@ .F.f $(PREPROCESS.F) $(OUTPUT_OPTION) $< .r.f $(PREPROCESS.r) $(OUTPUT_OPTION) $< .l.r $(LEX.l) $< > $@ mv -f lex.yy.r $@ .S.s $(PREPROCESS.S) $< > $@ .texinfo.info $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' name %s: Field '%s' not cached: %s hname vpath stem *name != '\0' /netrel/src/make-3.82.90-1/file.c strcache_iscached (name) Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... unlink: .SUFFIXES .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time %s: Timestamp out of range; substituting %s | %s .RECIPEPREFIX = # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. question_flag # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Files # files hash-table stats: print_file enter_file lookup_file undefined recursive simple Internal error: func_error: '%s' insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' warning: undefined variable `%.*s' default environment file environment override command line override automatic suffix basename addprefix filter %s: '%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s unterminated call to function `%s': missing `%c' abspath addsuffix notdir subst filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). *** (core dumped) (ignored) %s:%lu %s: recipe for target `%s' failed %s[%s] Error %d%s %s[%s] %s%s%s bash rksh dash ap <= end /netrel/src/make-3.82.90-1/job.c %s (line %d) Bad shell context (!unixy && !batch_mode_shell) %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) vfork cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) (remote) Putting child %p (%s) PID %s%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. %s: target `%s' does not exist %s: update target `%s' due to: %s construct_command_argv_internal break case continue eval exec exit export login logout read readonly shift switch test times trap ulimit umask unset while start_waiting_job %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to /tmp /usr/share/locale make getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine oneshell archives jobserver check-symlink .FEATURES SHELL MAKE_RESTARTS unknown debug level specification `%s' MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u BOGUS_UPDATE_STATUS /netrel/src/make-3.82.90-1/main.c unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. main always-make directory basic debug environment-overrides file help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch trace version print-directory no-print-directory what-if warn-undefined-variables eval quiet stop new-file assume-new assume-old max-load dry-run recon makefile Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. --trace Print tracing information. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. %s: %s[%u]: %s:%lu: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s %s: %s virtual memory exhausted write error: %s write error ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional warning: NUL character seen; rest of line ignored export override private define undefine prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SHELLFLAGS .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' $(HOME) HOME .INCLUDE_DIRS virtual memory exhausted empty variable name extraneous text after `define' directive missing `endef', unterminated `define' endef extraneous text after `endef' directive v != NULL /netrel/src/make-3.82.90-1/read.c invalid syntax in conditional unexport vpath include -include sinclude %s: %s recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s *p2 != '\0' v != 0 Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no `%%' .DEFAULT_GOAL missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /usr/include /usr/gnu/include /usr/local/include eval record_target_var GNUmakefile makefile Makefile stat: lstat: readlink: %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s %.2g Warning: File `%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 /netrel/src/make-3.82.90-1/remake.c Using default commands for `%s'. Nothing to be done for `%s'. `%s' is up to date. /lib /usr/lib update_file_1 _(knN r->suffixes[0] != NULL /netrel/src/make-3.82.90-1/rule.c r->suffixes[i] != NULL (%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u create_pattern_rule install_pattern_rule %s No strcache buffers total_buffers == numbuffs + 1 /netrel/src/make-3.82.90-1/strcache.c %s strcache buffers: %lu (%lu) / strings = %lu / storage = %lu B / avg = %lu B %s current buf: size = %hu B / used = %hu B / count = %hu / avg = %hu B %s other used: total = %lu B / count = %lu / avg = %lu B %s other free: total = %lu B / max = %lu B / min = %lu B / avg = %hu B %s strcache performance: lookups = %lu / hit rate = %lu%% # hash-table stats: strcache_print_stats automatic default environment makefile environment under -e command line `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) .RECIPEPREFIX .VARIABLES current_variable_set_list->next != NULL /netrel/src/make-3.82.90-1/variable.c MAKELEVEL %s%s%s MAKE_VERSION SHELL MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) %s=%u empty variable name # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # %u pattern-specific variable values # No pattern-specific variable values. pop_variable_scope 3.82.90 i686-pc-cygwin $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% BPOSIXLY_CORRECT alnum alpha blank cntrl digit graph lower print punct space upper xdigit next != NULL /netrel/src/make-3.82.90-1/glob/glob.c HOME glob GetModuleHandleA GetProcAddress __assert_func __ctype_ptr__ __errno __getreent __main _dll_crt0 at 0 _exit _fcntl64 _fdopen64 _fopen64 _fstat64 _impure_ptr _lseek64 _lstat64 _open64 _stat64 abort alarm atexit atof atoi atol calloc chdir clock_gettime close closedir ctime cygwin_detach_dll cygwin_internal dll_dllcrt0 dup2 execvp exit fclose fflush fgets fileno fork fprintf fputs fread free fwrite getcwd getenv getlogin getpid getpwnam getrlimit kill localtime malloc memcpy memmove memset mkstemp opendir pipe printf putc putenv puts qsort read readdir readlink realloc realpath remove setlocale setrlimit setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf strchr strcmp strcpy strdup strerror strlen strncmp strncpy strndup strpbrk strrchr strsignal strstr time tolower unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-8.dll Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 12 cores: using make_np = 10 Defined make macro "MAKE_NP" to "10" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:744) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:744) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified MPI libraries: ['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] Contents: ['Bin', 'Inc', 'Lib', 'License'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-yKlxvD/config.libraries/conftest.o -I/tmp/petsc-yKlxvD/config.setCompilers -I/tmp/petsc-yKlxvD/config.compilers -I/tmp/petsc-yKlxvD/config.headers -I/tmp/petsc-yKlxvD/PETSc.utilities.cacheDetails -I/tmp/petsc-yKlxvD/PETSc.utilities.featureTestMacros -I/tmp/petsc-yKlxvD/config.types -I/tmp/petsc-yKlxvD/PETSc.utilities.missing -I/tmp/petsc-yKlxvD/config.functions -I/tmp/petsc-yKlxvD/config.libraries -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-yKlxvD/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-yKlxvD/config.libraries/conftest.o /cygdrive/c/Program -lFiles/Microsoft -lHPC -lPack -l2008 R2/Lib/amd64/msmpi.lib Ws2_32.lib stdout: Warning: win32fe: File Not Found: R2/Lib/amd64/msmpi.lib cl : Command line warning D9024 : unrecognized source file type 'C:\\Program', object file assumed LINK : fatal error LNK1104: cannot open file 'C:\\Program.obj' Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: File Not Found: R2/Lib/amd64/msmpi.lib cl : Command line warning D9024 : unrecognized source file type 'C:\\Program', object file assumed LINK : fatal error LNK1104: cannot open file 'C:\\Program.obj' Popping language C **** Configure header /tmp/petsc-yKlxvD/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef _USE_MATH_DEFINES #define _USE_MATH_DEFINES 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_IO_H #define PETSC_HAVE_IO_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_DIRECT_H #define PETSC_HAVE_DIRECT_H 1 #endif #ifndef PETSC_HAVE_WINDOWSX_H #define PETSC_HAVE_WINDOWSX_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_DOS_H #define PETSC_HAVE_DOS_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_WS2TCPIP_H #define PETSC_HAVE_WS2TCPIP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_FORTRAN_CAPS #define PETSC_HAVE_FORTRAN_CAPS 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static __inline #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBWS2_32 #define PETSC_HAVE_LIBWS2_32 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-mswin-c-debug" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE___INT64 #define PETSC_HAVE___INT64 1 #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 4 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_uid_t #define PETSC_uid_t int #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_gid_t #define PETSC_gid_t int #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE__LSEEK #define PETSC_HAVE__LSEEK 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE__GETCWD #define PETSC_HAVE__GETCWD 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE__SLEEP #define PETSC_HAVE__SLEEP 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE__VSNPRINTF #define PETSC_HAVE__VSNPRINTF 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_STRICMP #define PETSC_HAVE_STRICMP 1 #endif #ifndef PETSC_HAVE__SNPRINTF #define PETSC_HAVE__SNPRINTF 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE__ACCESS #define PETSC_HAVE__ACCESS 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_MISSING_SIGUSR2 #define PETSC_MISSING_SIGUSR2 1 #endif #ifndef PETSC_MISSING_SIGURG #define PETSC_MISSING_SIGURG 1 #endif #ifndef PETSC_MISSING_SIGPIPE #define PETSC_MISSING_SIGPIPE 1 #endif #ifndef PETSC_MISSING_SIGHUP #define PETSC_MISSING_SIGHUP 1 #endif #ifndef PETSC_MISSING_SIGSTOP #define PETSC_MISSING_SIGSTOP 1 #endif #ifndef PETSC_MISSING_SIGSYS #define PETSC_MISSING_SIGSYS 1 #endif #ifndef PETSC_MISSING_SIGCONT #define PETSC_MISSING_SIGCONT 1 #endif #ifndef PETSC_HAVE_WSAGETLASTERROR #define PETSC_HAVE_WSAGETLASTERROR 1 #endif #ifndef PETSC_HAVE_CLOSESOCKET #define PETSC_HAVE_CLOSESOCKET 1 #endif #ifndef PETSC_MISSING_SIGTSTP #define PETSC_MISSING_SIGTSTP 1 #endif #ifndef PETSC_MISSING_SIGCHLD #define PETSC_MISSING_SIGCHLD 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_MISSING_SIGUSR1 #define PETSC_MISSING_SIGUSR1 1 #endif #ifndef PETSC_MISSING_SIGTRAP #define PETSC_MISSING_SIGTRAP 1 #endif #ifndef PETSC_MISSING_SIGQUIT #define PETSC_MISSING_SIGQUIT 1 #endif #ifndef PETSC_MISSING_SIGBUS #define PETSC_MISSING_SIGBUS 1 #endif #ifndef PETSC_HAVE_WINSOCK2_H #define PETSC_HAVE_WINSOCK2_H 1 #endif #ifndef PETSC_MISSING_SIGALRM #define PETSC_MISSING_SIGALRM 1 #endif #ifndef PETSC_NEEDS_UTYPE_TYPEDEFS #define PETSC_NEEDS_UTYPE_TYPEDEFS 1 #endif #ifndef PETSC_MISSING_SIGKILL #define PETSC_MISSING_SIGKILL 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #endif **** C specific Configure header /tmp/petsc-yKlxvD/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN typedef int int32_t; typedef int mode_t; typedef int pid_t; #if defined(__cplusplus) extern "C" { #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); } #else #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] and --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 R2/Inc'] did not work ******************************************************************************* File "./config/configure.py", line 272, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py", line 935, in configure child.configure() File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 571, in configure self.executeTest(self.configureLibrary) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py", line 748, in configureLibrary config.package.Package.configureLibrary(self) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 499, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 303, in generateGuesses raise RuntimeError(msg) ================================================================================ Finishing Configure Run at Fri Jan 31 09:18:38 2014 ================================================================================ From jed at jedbrown.org Fri Jan 31 11:28:33 2014 From: jed at jedbrown.org (Jed Brown) Date: Fri, 31 Jan 2014 10:28:33 -0700 Subject: [petsc-users] Galerkin multigrid coarsening In-Reply-To: References: <80518AB1-1282-4B70-A7E1-62A243C701A3@uni-mainz.de> <8761p1h104.fsf@jedbrown.org> <52EAAD28.1000607@gmail.com> <878utxfaen.fsf@jedbrown.org> Message-ID: <8738k4dpry.fsf@jedbrown.org> Torquil Macdonald S?rensen writes: > On 30 January 2014 22:05, Jed Brown wrote: >> >> > I did not have an opportunity to test what happens if I don't set any >> > restriction, but I'm hoping it will then use P^T, as before. >> >> Yes, it will. > > Only setting the interpolation, and not the restriction, results in a > crash for me (with output given at the bottom of this message). > Looking at the changed code, is it not the case that if "restrct" is > unset, the code will still try to use it in the MatMatMatMult() inside > the else-part of the new code? If restrct is not set, it will surely > differ from "interpolate" in the tests on lines 628 and 641, and > therefore trigger the else-part of the if-else constructs, thereby > causing this crash, right? Sorry, this is my fault. (I thought restrct was configured before getting to this bit of code, but clearly not.) Fixed now. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: From danyang.su at gmail.com Fri Jan 31 14:00:56 2014 From: danyang.su at gmail.com (Danyang Su) Date: Fri, 31 Jan 2014 12:00:56 -0800 Subject: [petsc-users] How can PETSc configure with MSMPI In-Reply-To: <52EBDC17.90605@gmail.com> References: <52EB0F87.2040208@gmail.com> <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> <52EB5936.3010306@gmail.com> <52EBDC17.90605@gmail.com> Message-ID: <52EC00F8.6020701@gmail.com> On 31/01/2014 9:23 AM, Danyang Su wrote: > On 31/01/2014 8:41 AM, Satish Balay wrote: >> Try: >> >> --with-mpi-include=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ >> 2008\ R2/Inc >> --with-mpi-lib=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ >> R2/Lib/amd64/msmpi.lib > ******************************************************************************* > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log > for details): > ------------------------------------------------------------------------------- > > --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', > 'Pack', '2008', 'R2/Lib/amd64/msmpi.lib'] and > --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 > R2/Inc'] did not work > ******************************************************************************* > > It's this due to the blank space in the path? Maybe I can reinstall > HPC package to another destination without blank space in the path. After reinstall Microsoft HPC in C:\MSHPC\MicrosoftHPCPack2012, I configure PETSc installation with ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadcomm --with-openmp --with-mpi-include="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc" --with-mpi-lib="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib" The error is as follows: ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Fortran error! mpi_init() could not be located! ******************************************************************************* > > Thanks, > > Danyang >> >> Satish >> >> >> On Fri, 31 Jan 2014, Danyang Su wrote: >> >>> Hi Barry, >>> >>> The configure.log has been attached. I can configure with MPICH2 >>> before. There >>> are three MPI implementations (MPICH2, Intel MPI and MSMPI) in my >>> computer, >>> the intel mpi distribution comes along with the installation of >>> Intel Parallel >>> Studio. The MPICH2 and MSMPI is installed separately. Now I have >>> uninstalled >>> MPICH2 and there is only MSMPI (with sdk) and Intel MPI distribution. >>> The system is WIN7 X64 Pro. >>> >>> Thanks, >>> >>> Danyang >>> >>> On 30/01/2014 7:40 PM, Barry Smith wrote: >>>> We need configure.log >>>> >>>> On Jan 30, 2014, at 8:50 PM, Danyang Su wrote: >>>> >>>>> Hi All, >>>>> >>>>> When configure petsc with msmpi >>>>> >>>>> ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' >>>>> --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco >>>>> mm --with-openmp --with-mpi-include="/cygdrive/c/Program >>>>> Files/Microsoft >>>>> HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog >>>>> ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" >>>>> >>>>> I get the following error >>>>> >>>>> --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', >>>>> 'Pack', >>>>> '2008', 'R2/Lib/amd64/msmpi.lib'] and >>>>> --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack >>>>> 2008 >>>>> R2/Inc'] did not work >>>>> >>>>> Thanks, >>>>> >>>>> Danyang >>> >>> > -------------- next part -------------- Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Fri Jan 31 11:34:27 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --download-f-blas-lapack --with-threadcomm --with-openmp --with-mpi-include=/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc --with-mpi-lib=/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib --useThreads=0 Working directory: /cygdrive/c/cygwin/packages/petsc-dev Machine platform: ('CYGWIN_NT-6.1-WOW64', 'nwmop', '1.7.22(0.268/5/3)', '2013-07-22 17:06', 'i686', '') Python version: 2.7.3 (default, Dec 18 2012, 13:50:09) [GCC 4.5.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py:823) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:823) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gdb...not found Checking for program /cygdrive/c/Windows/system32/gdb...not found Checking for program /cygdrive/c/Windows/gdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gdb...not found Checking for program /cygdrive/c/MinGW/bin/gdb...found Defined make macro "GDB" to "/cygdrive/c/MinGW/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dbx...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dbx...not found Checking for program /cygdrive/c/Windows/system32/dbx...not found Checking for program /cygdrive/c/Windows/dbx...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dbx...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dbx...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dbx...not found Checking for program /cygdrive/c/MinGW/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dbx...not found Checking for program /home/dsu/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/xdb...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/xdb...not found Checking for program /cygdrive/c/Windows/system32/xdb...not found Checking for program /cygdrive/c/Windows/xdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/xdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/xdb...not found Checking for program /cygdrive/c/MinGW/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/xdb...not found Checking for program /home/dsu/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dsymutil...not found Checking for program /cygdrive/c/Windows/system32/dsymutil...not found Checking for program /cygdrive/c/Windows/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dsymutil...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dsymutil...not found Checking for program /cygdrive/c/MinGW/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dsymutil...not found Checking for program /home/dsu/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/git...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/git...not found Checking for program /cygdrive/c/Windows/system32/git...not found Checking for program /cygdrive/c/Windows/git...not found Checking for program /cygdrive/c/Windows/System32/Wbem/git...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/git...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/git...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/git...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/git...not found Checking for program /cygdrive/c/MinGW/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/git...not found Checking for program /home/dsu/git...not found ================================================================================ TEST configureMercurial from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.5.2) ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/cvs...not found Checking for program /cygdrive/c/Windows/system32/cvs...not found Checking for program /cygdrive/c/Windows/cvs...not found Checking for program /cygdrive/c/Windows/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/cvs...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/cvs...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/cvs...not found Checking for program /cygdrive/c/MinGW/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/cvs...not found Checking for program /home/dsu/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/svn...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/svn...not found Checking for program /cygdrive/c/Windows/system32/svn...not found Checking for program /cygdrive/c/Windows/svn...not found Checking for program /cygdrive/c/Windows/System32/Wbem/svn...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/svn...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/svn...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/svn...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/svn...not found Checking for program /cygdrive/c/MinGW/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.8.3 ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/autoreconf...not found Checking for program /cygdrive/c/Windows/system32/autoreconf...not found Checking for program /cygdrive/c/Windows/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/Wbem/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/autoreconf...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/autoreconf...not found Checking for program /cygdrive/c/MinGW/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/autoreconf...not found Checking for program /home/dsu/autoreconf...not found ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-1uHnv2 All intermediate test results are stored in /tmp/petsc-1uHnv2/config.programs Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-1uHnv2/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-1uHnv2/config.programs/diff1" "/tmp/petsc-1uHnv2/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/dsu/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jan, 30, 2014" #define PETSC_VERSION_GIT "v3.4.3-2414-g135c7cd" #define PETSC_VERSION_DATE_GIT "2014-01-29 17:41:55 -0700" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/cygdrive/c/cygwin/packages/petsc-dev" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-mswin-c-debug"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-debug/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1500) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1500) **** printenv **** BIN_ROOT=C:\Program Files (x86)\Intel\Composer XE 2013\bin\ LIB=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\lib\x64;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\lib\intel64;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64; VS100COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\ COMPUTERNAME=NWMOP SCRIPT_NAME=compilervars_arch.bat ADVISOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Advisor XE 2013\.\ !C:=C:\Program Files (x86)\Intel\Composer XE 2013 WIN_TITLE_ARCH=Intel(R) 64 PRODUCT_NAME=Intel Composer XE 2013 CCP_INC=C:\MSHPC\MicrosoftHPCPack2012SDK\Include\ INFOPATH=/usr/local/info:/usr/share/info:/usr/info: SHELL=/bin/bash CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files USERDOMAIN=nwmop FrameworkVersion64=v4.0.30319 MANPATH=/usr/local/man:/usr/share/man:/usr/man: FrameworkDir=C:\Windows\Microsoft.NET\Framework64 CCP_LIB64=C:\MSHPC\MicrosoftHPCPack2012SDK\Lib\amd64\ ARCH_PATH_MPI=em64t KMP_AFFINITY=verbose,granularity=thread,compact COMSPEC=C:\Windows\system32\cmd.exe WIN_TITLE_VS=Visual Studio 2010 ARCH_PATH=intel64 TARGET_ARCH=intel64 MOZ_PLUGIN_PATH=C:\Program Files (x86)\PDFlite\ HOMEDRIVE=C: MKLROOT=C:\Program Files (x86)\Intel\Composer XE 2013\mkl FrameworkVersion=v4.0.30319 SYSTEMDRIVE=C: HOSTNAME=nwmop PETSC_ARCH=arch-mswin-c-debug PROCESSOR_LEVEL=6 OS=Windows_NT C_INCLUDE_PATH=C:\MinGW\include PRODUCT_NAME_FULL=Intel(R) Composer XE 2013 Update 5 (package 198) TARGET_VS=vs2010 INTEL_DEV_REDIST=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\ IFORT_COMPILER14=C:\Program Files (x86)\Intel\Composer XE 2013 SP1\ CommandPromptType=Native USER=dsu IFORT_COMPILER13=C:\Program Files (x86)\Intel\Composer XE 2013\ SYSTEMROOT=C:\Windows PS1=\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ tmp=C:\Users\dsu\AppData\Local\Temp TEMP=/tmp SHLVL=1 VISUALSVN_SERVER=C:\Program Files (x86)\VisualSVN Server\ PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev HOMEPATH=\Users\dsu WindowsSdkDir=C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\ ROOT=C:\Program Files (x86)\Intel\Composer XE 2013 LOGONSERVER=\\NWMOP CCP_JOBTEMPLATE=Default C_TARGET_ARCH=intel64 MSVS_VAR_SCRIPT="C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\..\..\VC\vcvarsall.bat" PRINTER=HP Color LaserJet Pro MFP M177 PCLmS INSPECTOR_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ SESSIONNAME=Console INCLUDE=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\include;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\include; PATH_PHAST=C:\Program Files (x86)\USGS\phast-2.4.1-7430\\bin APPDATA=C:\Users\dsu\AppData\Roaming OMP_NUM_THREADS=6 VBOX_INSTALL_PATH=C:\Program Files\Oracle\VirtualBox\ CCP_HOME=C:\MSHPC\MicrosoftHPCPack2012\ TMP=/tmp PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ INTEL_LICENSE_FILE=C:\Program Files (x86)\Common Files\Intel\Licenses COMMONPROGRAMFILES=C:\Program Files (x86)\Common Files HOME=/home/dsu MIC_LD_LIBRARY_PATH=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\compiler\lib\mic LANG=en_US.UTF-8 LIBRARY_PATH=C:\MinGW\lib ProgramData=C:\ProgramData PROCESSOR_ARCHITECTURE=x86 ALLUSERSPROFILE=C:\ProgramData _=./configure BUNDLE_NAME=Intel(R) Parallel Studio XE 2013 ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=dsu FrameworkDIR64=C:\Windows\Microsoft.NET\Framework64 PROMPT=$P$G PETSC_DIR2=/cygdrive/c/cygwin/packages/petsc-3.4.3 PETSC_ARCH3=arch-mswin-c-optimized INSPECTOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC CommonProgramW6432=C:\Program Files\Common Files WINDIR=C:\Windows Framework35Version=v3.5 temp=C:\Users\dsu\AppData\Local\Temp Platform=X64 NUMBER_OF_PROCESSORS=12 CCP_LIB32=C:\MSHPC\MicrosoftHPCPack2012SDK\Lib\i386\ PROCESSOR_ARCHITEW6432=AMD64 WIN_TITLE=Intel Composer XE 2013 Intel(R) 64 Visual Studio 2010 TARGET_VS_ARCH=amd64 MSMPI_INC=C:\MSHPC\MicrosoftHPCPack2012\Inc\ PUBLIC=C:\Users\Public USERPROFILE=C:\Users\dsu LIBPATH=C:\Windows\Microsoft.NET\Framework64\v4.0.30319;C:\Windows\Microsoft.NET\Framework64\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64; PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 45 Stepping 7, GenuineIntel PROGRAMFILES=C:\Program Files (x86) PROCESSOR_REVISION=2d07 PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32:/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/TEC100/BIN:/cygdrive/c/Program Files (x86)/CMake 2.8/bin:/cygdrive/c/Program Files/doxygen/bin:/cygdrive/c/Program Files (x86)/Graphviz 2.28/bin:/cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin:/cygdrive/c/MinGW/bin:/cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/VisualSVN/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt TERM=cygwin TZ=America/Vancouver CCP_SDK=C:\MSHPC\MicrosoftHPCPack2012SDK\ VSINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\ VTUNE_AMPLIFIER_XE_2013_DIR=C:\Program Files (x86)\Intel\VTune Amplifier XE 2013\ !::=::\ LOCALAPPDATA=C:\Users\dsu\AppData\Local MSMPI_LIB64=C:\MSHPC\MicrosoftHPCPack2012\Lib\amd64\ TEC100HOME=C:\Program Files\TEC100 FP_NO_HOST_CHECK=NO OLDPWD=/home/dsu PWD=/cygdrive/c/cygwin/packages/petsc-dev MSMPI_LIB32=C:\MSHPC\MicrosoftHPCPack2012\Lib\i386\ VCINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1507) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1472) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1491) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1491) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:400) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:400) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:410) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:410) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:526) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-1uHnv2/config.setCompilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:561) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:561) Locate a functional C preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.SET\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:595) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:595) Locate a functional CUDA compiler Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:633) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:633) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:736) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:736) Locate a functional Cxx compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXX" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:774) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:774) Locate a functional Cxx preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXXCPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\conffix.h" extern "C" { } #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.SET\\conftest.cc" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\cstdlib" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" namespace vc_attributes { #line 55 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum YesNoMaybe { No = 0x0fff0001, Maybe = 0x0fff0010, Yes = 0x0fff0100 }; typedef enum YesNoMaybe YesNoMaybe; enum AccessType { NoAccess = 0, Read = 1, Write = 2, ReadWrite = 3 }; typedef enum AccessType AccessType; [repeatable] [source_annotation_attribute( Parameter )] struct PreAttribute { PreAttribute(); #line 85 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostAttribute { PostAttribute(); #line 116 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( Parameter )] struct FormatStringAttribute { FormatStringAttribute(); #line 147 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [repeatable] [source_annotation_attribute( ReturnValue )] struct InvalidCheckAttribute { InvalidCheckAttribute(); #line 159 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" long Value; }; [source_annotation_attribute( Method )] struct SuccessAttribute { SuccessAttribute(); #line 169 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreBoundAttribute { PreBoundAttribute(); #line 180 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostBoundAttribute { PostBoundAttribute(); #line 190 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreRangeAttribute { PreRangeAttribute(); #line 200 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostRangeAttribute { PostRangeAttribute(); #line 212 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" }; #line 222 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef ::vc_attributes::YesNoMaybe SA_YesNoMaybe; const ::vc_attributes::YesNoMaybe SA_Yes = ::vc_attributes::Yes; const ::vc_attributes::YesNoMaybe SA_No = ::vc_attributes::No; const ::vc_attributes::YesNoMaybe SA_Maybe = ::vc_attributes::Maybe; typedef ::vc_attributes::AccessType SA_AccessType; const ::vc_attributes::AccessType SA_NoAccess = ::vc_attributes::NoAccess; const ::vc_attributes::AccessType SA_Read = ::vc_attributes::Read; const ::vc_attributes::AccessType SA_Write = ::vc_attributes::Write; const ::vc_attributes::AccessType SA_ReadWrite = ::vc_attributes::ReadWrite; typedef ::vc_attributes::PreAttribute SA_Pre; typedef ::vc_attributes::PostAttribute SA_Post; typedef ::vc_attributes::FormatStringAttribute SA_FormatString; typedef ::vc_attributes::InvalidCheckAttribute SA_InvalidCheck; typedef ::vc_attributes::SuccessAttribute SA_Success; typedef ::vc_attributes::PreBoundAttribute SA_PreBound; typedef ::vc_attributes::PostBoundAttribute SA_PostBound; typedef ::vc_attributes::PreRangeAttribute SA_PreRange; typedef ::vc_attributes::PostRangeAttribute SA_PostRange; #line 266 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:883) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:883) Locate a functional Fortran compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "FC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:902) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Make sure fortran comment "!" works Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:965) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:965) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -PIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting C linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -fPIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting C linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected C compiler flag -fPIC because linker cannot handle it Trying C compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -KPIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting C linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Trying C compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -qpic /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting C linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected C compiler flag -qpic because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -PIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting Cxx linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -fPIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting Cxx linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected Cxx compiler flag -fPIC because linker cannot handle it Trying Cxx compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -KPIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting Cxx linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Trying Cxx compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -qpic /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting Cxx linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected Cxx compiler flag -qpic because linker cannot handle it Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -PIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/PIC' Rejecting FC linker flag -PIC due to ifort: command line warning #10006: ignoring unknown option '/PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -fPIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejecting FC linker flag -fPIC due to ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejected FC compiler flag -fPIC because linker cannot handle it Trying FC compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -KPIC /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejecting FC linker flag -KPIC due to ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Trying FC compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -qpic /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/qpic' Rejecting FC linker flag -qpic due to ifort: command line warning #10006: ignoring unknown option '/qpic' Rejected FC compiler flag -qpic because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- c Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/tmp/petsc-1uHnv2/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/tmp/petsc-1uHnv2/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar cr /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/tmp/petsc-1uHnv2/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/tmp/petsc-1uHnv2/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar -X64 cr /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar -X64 cr /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar -X64 cr /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a -P512" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib -a -P512 /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 25600 Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a /tmp/petsc-1uHnv2/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-1uHnv2/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/tmp/petsc-1uHnv2/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/tmp/petsc-1uHnv2/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "-a" Defined make macro "AR_LIB_SUFFIX" to "lib" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1208) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1208) Check that the linker can produce shared libraries Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -shared /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/libconftest.so /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-dynamic'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -dynamic /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-dynamic' Rejecting C linker flag -dynamic due to cl : Command line warning D9002 : ignoring unknown option '-dynamic' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/libconftest.so /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-qmkshrobj'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -qmkshrobj /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Rejecting C linker flag -qmkshrobj due to cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/libconftest.so /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -shared /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/libconftest.dll /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib using flags [] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-1uHnv2/config.setCompilers/libconftest.lib /tmp/petsc-1uHnv2/config.setCompilers/conftest.o ; /usr/bin/true /tmp/petsc-1uHnv2/config.setCompilers/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/tmp/petsc-1uHnv2/config.setCompilers -lconftest Using shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib with flags [] and library extension lib Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1286) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1286) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying C linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-rpath, Trying C linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting C linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected C linker flag -R Trying C linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting C linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected C linker flag -rpath Trying C linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-R, Popping language C Pushing language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying Cxx linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-rpath, Trying Cxx linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting Cxx linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected Cxx linker flag -R Trying Cxx linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting Cxx linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected Cxx linker flag -rpath Trying Cxx linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-R, Popping language Cxx Pushing language FC Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying FC linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-rpath, Trying FC linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting FC linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejected FC linker flag -R Trying FC linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 40192 stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting FC linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected FC linker flag -rpath Trying FC linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-R, Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1370) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1370) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-1uHnv2/config.headers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Dynamic loading disabled since dlfcn.h was missing ================================================================================ TEST output from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1416) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Output module data as defines and substitutions Substituting "CC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) ================================================================================ TEST configureSerializedFunctions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -MT Trying C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Z7 Popping language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -MT Trying Cxx compiler flag -GR Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -GR Trying Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Z7 Trying Cxx compiler flag -Zm200 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Zm200 Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nIntel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Z7 Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-1uHnv2/config.compilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static __inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static __inline Popping language C Defined "C_STATIC_INLINE" to "static __inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ================================================================================ TEST checkCLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -v -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' Popping language C compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Libraries needed to link C code with another linker: [] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 -MMD -MP /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 -MMD /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD Trying C compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 -xMMD /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 -qmakedep=gcc /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 -MD /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -MD because no dependency file (/tmp/petsc-1uHnv2/config.setCompilers/conftest.d) was generated Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD -MP /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD Trying Cxx compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -xMMD /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -qmakedep=gcc /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MD /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected Cxx compiler flag -MD because no dependency file (/tmp/petsc-1uHnv2/config.setCompilers/conftest.d) was generated Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -MMD -MP /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -MMD /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -xMMD /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xMMD' Successful compile: Source: program main end Rejecting compiler flag -xMMD due to ifort: command line warning #10006: ignoring unknown option '/xMMD' Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -qmakedep=gcc /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Successful compile: Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -MD /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10121: overriding '/MT' with '/MD' Successful compile: Source: program main end Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-1uHnv2/config.setCompilers/conftest.d) was generated Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -+ /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -+ due to nonzero status from link Rejecting compiler flag -+ due to cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -x cxx -tlocal /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx Possible ERROR while running compiler: exit code 32512 stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxxSource: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -x cxx -tlocal due to nonzero status from link Rejecting compiler flag -x cxx -tlocal due to Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -Kc++ /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -Kc++ due to nonzero status from link Rejecting compiler flag -Kc++ due to cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag -TP Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -v -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg LINK compilers: Unknown arg LINK compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg found compilers: Unknown arg found compilers: Checking arg or compilers: Unknown arg or compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg built compilers: Unknown arg built compilers: Checking arg by compilers: Unknown arg by compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg last compilers: Unknown arg last compilers: Checking arg incremental compilers: Unknown arg incremental compilers: Checking arg link; compilers: Unknown arg link; compilers: Checking arg performing compilers: Unknown arg performing compilers: Checking arg full compilers: Unknown arg full compilers: Checking arg link compilers: Unknown arg link compilers: Libraries needed to link Cxx code with another linker: [] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.o /tmp/petsc-1uHnv2/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type unchanged with code void d1chk(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.o /tmp/petsc-1uHnv2/config.compilers/confc.o stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type caps with code void D1CHK(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void D1CHK(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.o /tmp/petsc-1uHnv2/config.compilers/confc.o Popping language FC compilers: Fortran name mangling is caps Defined "HAVE_FORTRAN_CAPS" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-1uHnv2/config.compilers/conftest.o /tmp/petsc-1uHnv2/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -cpp /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -cpp due to nonzero status from link Rejecting compiler flag -cpp due to ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -xpp=cpp /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -xpp=cpp due to nonzero status from link Rejecting compiler flag -xpp=cpp due to ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -F /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line error: option '/F' is ambiguous Possible ERROR while running compiler: exit code 256 stdout: ifort: command line error: option '/F' is ambiguousSource: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -F due to nonzero status from link Rejecting compiler flag -F due to ifort: command line error: option '/F' is ambiguous PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -Cpp /tmp/petsc-1uHnv2/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -Cpp due to nonzero status from link Rejecting compiler flag -Cpp due to ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag -fpp Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -fpp -DTesting /tmp/petsc-1uHnv2/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -V stdout: ifort: command line error: no files specified; for help type "ifort /help" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -v -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/v' C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mGLOB_microsoft_version=1600 "-mGLOB_options_string=-v -MT -Z7 -fpp -nologo -FeC:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 -mP3OPT_defaultlibs_omit=FALSE -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF -mP3OPT_defaultlibs_f90_port -mP1OPT_check_stack -mP3OPT_emit_line_numbers -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 -mDEBUG_no_pdb=TRUE -mP3OPT_inline_alloca -mGLOB_routine_pointer_size_64 -mGLOB_split_functions=0 -mIPOPT_activate -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d92 -mCG_bnl_movbe=T -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=0 -mP2OPT_offload_unique_var_string=843251582 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=C:\cygwin\tmp\8432slis4 -mIPOPT_mo_global_data "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe" "-debug" "-pdb:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.pdb" "-subsystem:console" "-nologo" "C:\cygwin\tmp\conftest.obj"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_8432.obj -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=C:\cygwin\tmp\8432tempfile2 -mGLOB_os_target=GLOB_OS_TARGET_WINNT -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_8432.obj -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true C:\cygwin\tmp\conftest.obj -mIPOPT_object_files=T -mIPOPT_assembly_files=C:\cygwin\tmp\8432alis3 link -out:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe -debug -pdb:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.pdb -subsystem:console -nologo C:\cygwin\tmp\conftest.obj Popping language FC compilers: Checking arg ifort: compilers: Unknown arg ifort: compilers: Checking arg command compilers: Unknown arg command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg #10006: compilers: Unknown arg #10006: compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Unknown arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Checking arg -mP1OPT_version=13.1-intel64 compilers: Unknown arg -mP1OPT_version=13.1-intel64 compilers: Checking arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Unknown arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mGLOB_microsoft_version=1600 compilers: Unknown arg -mGLOB_microsoft_version=1600 compilers: Checking arg "-mGLOB_options_string=-v compilers: Unknown arg "-mGLOB_options_string=-v compilers: Checking arg -MT compilers: Unknown arg -MT compilers: Checking arg -Z7 compilers: Unknown arg -Z7 compilers: Checking arg -fpp compilers: Unknown arg -fpp compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg -FeC:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -FeC:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Handling HPUX list of directories: \PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Checking arg -mP3OPT_defaultlibs_omit=FALSE compilers: Unknown arg -mP3OPT_defaultlibs_omit=FALSE compilers: Checking arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Unknown arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Checking arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Unknown arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Checking arg -mP3OPT_defaultlibs_f90_port compilers: Unknown arg -mP3OPT_defaultlibs_f90_port compilers: Checking arg -mP1OPT_check_stack compilers: Unknown arg -mP1OPT_check_stack compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Checking arg -mDEBUG_no_pdb=TRUE compilers: Unknown arg -mDEBUG_no_pdb=TRUE compilers: Checking arg -mP3OPT_inline_alloca compilers: Unknown arg -mP3OPT_inline_alloca compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_split_functions=0 compilers: Unknown arg -mGLOB_split_functions=0 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d92 compilers: Unknown arg -mGLOB_product_id_code=0x22006d92 compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=0 compilers: Unknown arg -mGLOB_offload_mode=0 compilers: Checking arg -mP2OPT_offload_unique_var_string=843251582 compilers: Unknown arg -mP2OPT_offload_unique_var_string=843251582 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Unknown arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=C:\cygwin\tmp\8432slis4 compilers: Unknown arg -mIPOPT_source_files_list=C:\cygwin\tmp\8432slis4 compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe compilers: Checking arg "-debug" compilers: Unknown arg -debug compilers: Checking arg "-pdb:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.pdb" compilers: Unknown arg -pdb:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg "-subsystem:console" compilers: Unknown arg -subsystem:console compilers: Checking arg "-nologo" compilers: Unknown arg -nologo compilers: Checking arg "C:\cygwin\tmp\conftest.obj"" compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_8432.obj compilers: Unknown arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_8432.obj compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\8432tempfile2 compilers: Unknown arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\8432tempfile2 compilers: Checking arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Unknown arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Checking arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Unknown arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Checking arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_8432.obj compilers: Unknown arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_8432.obj compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=C:\cygwin\tmp\8432alis3 compilers: Unknown arg -mIPOPT_assembly_files=C:\cygwin\tmp\8432alis3 compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg -out:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg -out:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -debug compilers: Unknown arg -debug compilers: Checking arg -pdb:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.pdb compilers: Unknown arg -pdb:C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg -subsystem:console compilers: Unknown arg -subsystem:console compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Libraries needed to link Fortran code with the C linker: ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.setCompilers/conftest.exe Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void foo(void){D1CHK();} Popping language Cxx Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void D1CHK(void){return;} Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.o /tmp/petsc-1uHnv2/config.compilers/cxxobj.o /tmp/petsc-1uHnv2/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Cygwin detected: ignoring HAVE_F90_2PTR_ARG test ================================================================================ TEST checkFortranModuleInclude from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.compilers/conftest.exe -I/tmp/petsc-1uHnv2/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.o /tmp/petsc-1uHnv2/config.compilers/configtest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -module /tmp/petsc-1uHnv2/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Possible ERROR while running compiler: exit code 32512 Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.compilers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -module:/tmp/petsc-1uHnv2/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1367) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1367) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.headers/conftest.o -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.headers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.headers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.o Executing: /tmp/petsc-1uHnv2/config.headers/conftest.exe Executing: /tmp/petsc-1uHnv2/config.headers/conftest.exe Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 5 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" ================================================================================ TEST checkSysWait from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.headers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } ================================================================================ TEST checkTime from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.headers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } ================================================================================ TEST checkMath from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\math.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MATH_H" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.headers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.headers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _USE_MATH_DEFINES 1 #include int main() { double pi = M_PI; if (pi); ; return 0; } Defined "_USE_MATH_DEFINES" to "1" Activated Windows math #defines, like M_PI ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 81 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\malloc.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\Direct.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DIRECT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 89 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #pragma once #line 25 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #pragma once #line 49 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 61 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(push) #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(disable:4001) #line 24 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma once #line 181 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 194 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 195 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 199 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 207 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 208 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 216 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 217 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 224 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 226 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 228 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 230 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 232 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 235 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 236 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 245 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 249 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 253 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 257 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 261 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 265 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 267 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(pop) #line 274 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 275 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 277 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma once #line 29 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 100 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 104 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 108 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 112 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 116 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 122 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 127 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 128 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4116) #line 135 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 136 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 137 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4514) #pragma warning(disable:4103) #line 144 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(push) #line 147 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4001) #pragma warning(disable:4201) #pragma warning(disable:4214) #line 151 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\excpt.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\dos.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DOS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #pragma once #line 17 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 35 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 36 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 37 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 88 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 103 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 145 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\setjmp.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\limits.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\fcntl.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 117 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\io.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 125 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdint.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\float.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\search.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.headers/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.c(4) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_SIZE, using default 32768 Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_LINESIZE, using default 32 Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE9C4C~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_ASSOC, using default 2 Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-1uHnv2/config.functions Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Executing: /tmp/petsc-1uHnv2/config.functions/conftest.exe Executing: /tmp/petsc-1uHnv2/config.functions/conftest.exe ================================================================================ TEST checkSysinfo from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkVPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_VPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-1uhnv2\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVFPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_VFPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-1uhnv2\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVSNPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE__VSNPRINTF" to "1" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.functions/conftest.cc stdout: conftest.cc c:\cygwin\tmp\petsc-1uhnv2\config.functions\conftest.cc(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; _vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx ================================================================================ TEST checkNanosleep from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union type Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union typeSource: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Compile failed inside link ================================================================================ TEST checkSignalHandlerType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.functions/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all types Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all typesSource: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-1uhnv2\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-1uhnv2\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-1uhnv2\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-1uhnv2\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; __va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkClassify from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [rand getdomainname _sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [rand] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_RAND" to "1" Checking for functions [getdomainname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE__SLEEP" to "1" Checking for functions [snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [realpath] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [bzero _getcwd getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [bzero] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE__GETCWD" to "1" Checking for functions [getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [uname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE__LSEEK" to "1" Checking for functions [sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [_access lseek usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE__ACCESS" to "1" Checking for functions [lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LSEEK" to "1" Checking for functions [usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [_intel_fast_memset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlclose] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [clock get_nprocs access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_CLOCK" to "1" Checking for functions [get_nprocs] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [_snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE__SNPRINTF" to "1" Checking for functions [dlerror] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externalsChecking for functions [fork getpagesize sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [fork] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getpagesize] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [memalign] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_GETCWD" to "1" Checking for functions [gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externalsChecking for functions [gethostbyname gettimeofday readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [gethostbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gettimeofday] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigaction] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [dlopen drand48 socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [dlopen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [drand48] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_MEMMOVE" to "1" Checking for functions [signal] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_SIGNAL" to "1" Checking for functions [popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [getrusage] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [times] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_TIME" to "1" Checking for functions [sysctlbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Defined "HAVE_STRICMP" to "1" ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFeatureTestMacros from PETSc.utilities.featureTestMacros(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from PETSc.utilities.featureTestMacros(config/PETSc/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST check_siginfo_t from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-1uHnv2/config.types Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found ================================================================================ TEST check__int64 from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } Typedefed "int" to "mode_t" Checking for type: off_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } Typedefed "int" to "int32_t" ================================================================================ TEST checkPID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } Typedefed "int" to "pid_t" ================================================================================ TEST checkUID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/config.types /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.types\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.TYP\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.TYP\\conftest.c" Defined "uid_t" to "int" Defined "gid_t" to "int" ================================================================================ TEST checkSignal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ================================================================================ TEST checkCxxComplex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/config.types/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.types/conftest.o Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:150) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:150) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.types/conftest.F stdout: C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.F(3): warning #7319: This argument's data type is incompatible with this intrinsic procedure; procedure assumed EXTERNAL. [DREAL] d = dreal(3.0) ----------------^ Successful compile: Source: program main double precision d d = dreal(3.0) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:158) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:158) Checks for working const, and if not found defines it to empty string Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-1uhnv2\config.types\conftest.c(25) : warning C4700: uninitialized local variable 'x' used c:\cygwin\tmp\petsc-1uhnv2\config.types\conftest.c(30) : warning C4700: uninitialized local variable 't' used c:\cygwin\tmp\petsc-1uhnv2\config.types\conftest.c(46) : warning C4700: uninitialized local variable 'b' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:214) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:214) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { /* Are we little or big endian? From Harbison&Steele. */ union { long l; char c[sizeof(long)]; } u; u.l = 1; exit(u.c[sizeof(long) - 1] == 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:318) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:318) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:364) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:364) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-1uHnv2/config.libraries Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST checkMath from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:250) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:250) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:266) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:266) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: erf() not found ================================================================================ TEST checkMathTgamma from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:275) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:275) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: tgamma() not found ================================================================================ TEST checkMathFenv from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:284) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:284) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Compile failed inside link Popping language C Warning: with FE_DFL_ENV not found ================================================================================ TEST checkCompression from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:292) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:292) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -lz stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Popping language C Checking for functions [compress uncompress] in library ['zlib.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o zlib.lib stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Popping language C Warning: No compression library found ================================================================================ TEST checkRealtime from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:313) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:313) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:329) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:329) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -ldl stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Popping language C Checking for header: dlfcn.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.headers /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE9C4C~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureTimers from PETSc.utilities.timer(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for functions [MPI_CRAY_barrier] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); static void _check_MPI_CRAY_barrier() { MPI_CRAY_barrier(); } int main() { _check_MPI_CRAY_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:39) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:39) Checks for limits All intermediate test results are stored in /tmp/petsc-1uHnv2/PETSc.utilities.missing Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:49) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:49) Checks if u_short is undefined Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } Defined "NEEDS_UTYPE_TYPEDEFS" to "1" ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:55) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:55) Checks for SOCKETS Checking for functions [socket] in library ['Ws2_32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_socket() { socket(0,0,0);; } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o Ws2_32.lib Defined "HAVE_LIBWS2_32" to "1" Popping language C Adding ['Ws2_32.lib'] to LIBS Defined "HAVE_WINSOCK2_H" to "1" Defined "HAVE_SOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { closesocket(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o Ws2_32.lib Defined "HAVE_CLOSESOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { WSAGetLastError(); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_WSAGETLASTERROR" to "1" ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:75) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:75) Check for missing signals, and define MISSING_ if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Defined "MISSING_SIGALRM" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Defined "MISSING_SIGBUS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Defined "MISSING_SIGCHLD" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Defined "MISSING_SIGCONT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Defined "MISSING_SIGHUP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Defined "MISSING_SIGKILL" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Defined "MISSING_SIGPIPE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Defined "MISSING_SIGQUIT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Defined "MISSING_SIGSTOP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Defined "MISSING_SIGSYS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Defined "MISSING_SIGTRAP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Defined "MISSING_SIGTSTP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Defined "MISSING_SIGURG" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Defined "MISSING_SIGUSR1" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } Defined "MISSING_SIGUSR2" to "1" ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:92) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:92) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Added prototype #include int getdomainname(char *, size_t); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Added prototype #include int getdomainname(char *, size_t); to language extern C Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:117) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:117) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Added prototype double drand48(void); to language C Added prototype void srand48(long int); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-1uHnv2/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE9C4C~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Compile failed inside link Added prototype double drand48(void); to language extern C Added prototype void srand48(long int); to language extern C Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:141) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:141) ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/config.types -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.libraries/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [GET_COMMAND_ARGUMENT] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GET_COMMAND_ARGUMENT(); static void _check_GET_COMMAND_ARGUMENT() { GET_COMMAND_ARGUMENT(); } int main() { _check_GET_COMMAND_ARGUMENT();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [GETARG] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GETARG(); static void _check_GETARG() { GETARG(); } int main() { _check_GETARG();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [ipxfargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [f90_unix_MP_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [iargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [GETARG at 16] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')'Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG at 16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) GETARG at 16_will_always_fail_with_ENOSYS(); #else GETARG at 16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.functions/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE9C4C~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST configureMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:61) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:61) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gmake...not found Checking for program /cygdrive/c/Windows/system32/gmake...not found Checking for program /cygdrive/c/Windows/gmake...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gmake...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gmake...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gmake...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gmake...not found Checking for program /cygdrive/c/MinGW/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/gmake...not found Checking for program /home/dsu/gmake...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:79) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:79) Check for GNU make Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: $xqB [^_] [^_] 3S$3C [^_] ,[^_] <-tL<@t<<+uI ,[^_] ue;} <@u. [^_] [^] r.v(1 [^_] [^_] L[^_] [^_] [^_] [^_] t+;5 [^_] [^_] <[^_] $/*B $L*B <[^_] [^_] [^_] $T+B $T+B $T+B $4+B ,[^_] [^_] ,[^_] $l,B S$;V$ [^_] $4,B $l-B $H-B [^_] <[^_] ,[^_] <[^_] $T.B $G.B $`/B $e0B $z0B $|1B $(/B @[^] $P0B $80B $`1B $<1B <[^_] 2[^_] 2^_] 2^_] 2[^_] 2^_] 2^_] ,[^_] ;] [^_] [^_] t6;} [^_] \[^_] [^_] $,7B $h6B $@6B $@6B WVSP $\7B [^_] $08B $T8B $|8B $U9B [^] $h9B [^_] [^_] <\t__B 8.t. $m`B $V`B $+5P $(`B [^_] [^_] $$aB $HaB $5^B [^_] L[^_ $2aB L[^_] $5^B WVSP [^_] [^_] [^_] BN at t [^] [^_] ;-tc $4bB $,bB $DbB S$tL @N at u [^_] [^_] $$cB $tcB [^_] $CgB $DcB $lB ,[^_] $RlB t.<$u $ZlB ,[^_] [^_] [^_] [^_] [^_] t.;5 WVS1 8.t( [^_] [^_] tj=t ,[^_] ,[^_] $(){}$`^~! cyggcc_s-1.dll __register_frame_info cyggcj-11.dll _Jv_RegisterClasses __deregister_frame_info attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES Recipe has too many lines (%ud) $(MAKE) ${MAKE} kill # recipe to execute (built-in): (from `%s', line %lu): %c%.*s .SUFFIXES SUFFIXES ARFLAGS OBJC CHECKOUT,v +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi WEAVE weave CWEAVE cweave TANGLE tangle CTANGLE ctangle rm -f LINK.o $(CC) $(LDFLAGS) $(TARGET_ARCH) COMPILE.c $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t YACC.m LEX.m COMPILE.f $(FC) $(FFLAGS) $(TARGET_ARCH) -c LINK.f $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.F $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c LINK.r $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.def $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) COMPILE.mod $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) COMPILE.p $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.p $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.s $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.s $(AS) $(ASFLAGS) $(TARGET_MACH) LINK.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F PREPROCESS.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F LINT.c $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< SCCS/s.% $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ .cpp $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.m) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ .mod $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o $(COMPILE.c) $(OUTPUT_OPTION) $< .cc.o $(COMPILE.cc) $(OUTPUT_OPTION) $< .C.o $(COMPILE.C) $(OUTPUT_OPTION) $< .cpp.o $(COMPILE.cpp) $(OUTPUT_OPTION) $< .f.o $(COMPILE.f) $(OUTPUT_OPTION) $< .m.o $(COMPILE.m) $(OUTPUT_OPTION) $< .p.o $(COMPILE.p) $(OUTPUT_OPTION) $< .F.o $(COMPILE.F) $(OUTPUT_OPTION) $< .r.o $(COMPILE.r) $(OUTPUT_OPTION) $< .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c .l.ln @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c .y.c $(YACC.y) $< mv -f y.tab.c $@ .l.c @$(RM) $@ $(LEX.l) $< > $@ .ym.m $(YACC.m) $< mv -f y.tab.c $@ .lm.m @$(RM) $@ $(LEX.m) $< > $@ .F.f $(PREPROCESS.F) $(OUTPUT_OPTION) $< .r.f $(PREPROCESS.r) $(OUTPUT_OPTION) $< .l.r $(LEX.l) $< > $@ mv -f lex.yy.r $@ .S.s $(PREPROCESS.S) $< > $@ .texinfo.info $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' name %s: Field '%s' not cached: %s hname vpath stem *name != '\0' /netrel/src/make-3.82.90-1/file.c strcache_iscached (name) Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... unlink: .SUFFIXES .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time %s: Timestamp out of range; substituting %s | %s .RECIPEPREFIX = # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. question_flag # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Files # files hash-table stats: print_file enter_file lookup_file undefined recursive simple Internal error: func_error: '%s' insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' warning: undefined variable `%.*s' default environment file environment override command line override automatic suffix basename addprefix filter %s: '%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s unterminated call to function `%s': missing `%c' abspath addsuffix notdir subst filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). *** (core dumped) (ignored) %s:%lu %s: recipe for target `%s' failed %s[%s] Error %d%s %s[%s] %s%s%s bash rksh dash ap <= end /netrel/src/make-3.82.90-1/job.c %s (line %d) Bad shell context (!unixy && !batch_mode_shell) %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) vfork cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) (remote) Putting child %p (%s) PID %s%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. %s: target `%s' does not exist %s: update target `%s' due to: %s construct_command_argv_internal break case continue eval exec exit export login logout read readonly shift switch test times trap ulimit umask unset while start_waiting_job %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to /tmp /usr/share/locale make getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine oneshell archives jobserver check-symlink .FEATURES SHELL MAKE_RESTARTS unknown debug level specification `%s' MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u BOGUS_UPDATE_STATUS /netrel/src/make-3.82.90-1/main.c unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. main always-make directory basic debug environment-overrides file help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch trace version print-directory no-print-directory what-if warn-undefined-variables eval quiet stop new-file assume-new assume-old max-load dry-run recon makefile Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. --trace Print tracing information. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. %s: %s[%u]: %s:%lu: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s %s: %s virtual memory exhausted write error: %s write error ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional warning: NUL character seen; rest of line ignored export override private define undefine prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SHELLFLAGS .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' $(HOME) HOME .INCLUDE_DIRS virtual memory exhausted empty variable name extraneous text after `define' directive missing `endef', unterminated `define' endef extraneous text after `endef' directive v != NULL /netrel/src/make-3.82.90-1/read.c invalid syntax in conditional unexport vpath include -include sinclude %s: %s recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s *p2 != '\0' v != 0 Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no `%%' .DEFAULT_GOAL missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /usr/include /usr/gnu/include /usr/local/include eval record_target_var GNUmakefile makefile Makefile stat: lstat: readlink: %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s %.2g Warning: File `%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 /netrel/src/make-3.82.90-1/remake.c Using default commands for `%s'. Nothing to be done for `%s'. `%s' is up to date. /lib /usr/lib update_file_1 _(knN r->suffixes[0] != NULL /netrel/src/make-3.82.90-1/rule.c r->suffixes[i] != NULL (%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u create_pattern_rule install_pattern_rule %s No strcache buffers total_buffers == numbuffs + 1 /netrel/src/make-3.82.90-1/strcache.c %s strcache buffers: %lu (%lu) / strings = %lu / storage = %lu B / avg = %lu B %s current buf: size = %hu B / used = %hu B / count = %hu / avg = %hu B %s other used: total = %lu B / count = %lu / avg = %lu B %s other free: total = %lu B / max = %lu B / min = %lu B / avg = %hu B %s strcache performance: lookups = %lu / hit rate = %lu%% # hash-table stats: strcache_print_stats automatic default environment makefile environment under -e command line `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) .RECIPEPREFIX .VARIABLES current_variable_set_list->next != NULL /netrel/src/make-3.82.90-1/variable.c MAKELEVEL %s%s%s MAKE_VERSION SHELL MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) %s=%u empty variable name # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # %u pattern-specific variable values # No pattern-specific variable values. pop_variable_scope 3.82.90 i686-pc-cygwin $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% BPOSIXLY_CORRECT alnum alpha blank cntrl digit graph lower print punct space upper xdigit next != NULL /netrel/src/make-3.82.90-1/glob/glob.c HOME glob GetModuleHandleA GetProcAddress __assert_func __ctype_ptr__ __errno __getreent __main _dll_crt0 at 0 _exit _fcntl64 _fdopen64 _fopen64 _fstat64 _impure_ptr _lseek64 _lstat64 _open64 _stat64 abort alarm atexit atof atoi atol calloc chdir clock_gettime close closedir ctime cygwin_detach_dll cygwin_internal dll_dllcrt0 dup2 execvp exit fclose fflush fgets fileno fork fprintf fputs fread free fwrite getcwd getenv getlogin getpid getpwnam getrlimit kill localtime malloc memcpy memmove memset mkstemp opendir pipe printf putc putenv puts qsort read readdir readlink realloc realpath remove setlocale setrlimit setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf strchr strcmp strcpy strdup strerror strlen strncmp strncpy strndup strpbrk strrchr strsignal strstr time tolower unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-8.dll Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 12 cores: using make_np = 10 Defined make macro "MAKE_NP" to "10" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:744) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:744) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified MPI libraries: ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] Contents: ['Bin', 'Inc', 'Lib', 'License', 'support.txt'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_LIBMSMPI" to "1" Popping language C Checking for headers User specified MPI libraries: ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Checking include with compiler flags var CPPFLAGS ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.headers -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 393 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE9C4C~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-1uhnv2\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Found header files ['mpi.h'] in ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/petsc-1uHnv2/config.packages.MPI Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:182) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:182) Check for functions added to the interface in MPI-2 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_FINALIZED" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST configureTypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.types/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.types/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Executing: /tmp/petsc-1uHnv2/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe Executing: /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe Executing: /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe Defined "HAVE_MPI_INT64_T" to "1" Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe Executing: /tmp/petsc-1uHnv2/config.packages.MPI/conftest.exe Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:320) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:320) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:630) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:630) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.headers -I/tmp/petsc-1uHnv2/PETSc.utilities.cacheDetails -I/tmp/petsc-1uHnv2/PETSc.utilities.featureTestMacros -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/config.packages.MPI -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-1uHnv2/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_SGI_barrier referenced in function _check_MPI_SGI_barrier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_SGI_barrier referenced in function _check_MPI_SGI_barrier C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:640) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:640) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.libraries/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.functions -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/PETSc.utilities.missing -I/tmp/petsc-1uHnv2/config.libraries -MT -GR -EHsc -Z7 -Zm200 -TP -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.libraries/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-1uHnv2/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_LIBMSMPI" to "1" Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:658) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:658) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -Z7 -fpp -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for functions [] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-1uHnv2/config.libraries/conftest.o -I/tmp/petsc-1uHnv2/config.compilers -I/tmp/petsc-1uHnv2/config.setCompilers -I/tmp/petsc-1uHnv2/config.types -I/tmp/petsc-1uHnv2/config.libraries -MT -Z7 -fpp -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-1uHnv2/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-1uHnv2/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-1uHnv2/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_INIT referenced in function MAIN__ conftest.obj : error LNK2001: unresolved external symbol MPI_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_COMM_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_COMM_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_COMM_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_WIN_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_WIN_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_WIN_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_TYPE_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_TYPE_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_TYPE_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_CONVERSION_FN_NULL C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 14 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_INIT referenced in function MAIN__ conftest.obj : error LNK2001: unresolved external symbol MPI_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_COMM_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_COMM_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_COMM_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_WIN_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_WIN_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_WIN_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_TYPE_DUP_FN conftest.obj : error LNK2001: unresolved external symbol MPI_TYPE_NULL_DELETE_FN conftest.obj : error LNK2001: unresolved external symbol MPI_TYPE_NULL_COPY_FN conftest.obj : error LNK2001: unresolved external symbol MPI_CONVERSION_FN_NULL C:\cygwin\tmp\PE9C4C~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 14 unresolved externals Popping language FC **** Configure header /tmp/petsc-1uHnv2/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef _USE_MATH_DEFINES #define _USE_MATH_DEFINES 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_IO_H #define PETSC_HAVE_IO_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_DIRECT_H #define PETSC_HAVE_DIRECT_H 1 #endif #ifndef PETSC_HAVE_WINDOWSX_H #define PETSC_HAVE_WINDOWSX_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_DOS_H #define PETSC_HAVE_DOS_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_WS2TCPIP_H #define PETSC_HAVE_WS2TCPIP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_FORTRAN_CAPS #define PETSC_HAVE_FORTRAN_CAPS 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static __inline #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBWS2_32 #define PETSC_HAVE_LIBWS2_32 1 #endif #ifndef PETSC_HAVE_LIBMSMPI #define PETSC_HAVE_LIBMSMPI 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-mswin-c-debug" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE___INT64 #define PETSC_HAVE___INT64 1 #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 4 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_uid_t #define PETSC_uid_t int #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_gid_t #define PETSC_gid_t int #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE__LSEEK #define PETSC_HAVE__LSEEK 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE__GETCWD #define PETSC_HAVE__GETCWD 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE__SLEEP #define PETSC_HAVE__SLEEP 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE__VSNPRINTF #define PETSC_HAVE__VSNPRINTF 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_STRICMP #define PETSC_HAVE_STRICMP 1 #endif #ifndef PETSC_HAVE__SNPRINTF #define PETSC_HAVE__SNPRINTF 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE__ACCESS #define PETSC_HAVE__ACCESS 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_INT64_T #define PETSC_HAVE_MPI_INT64_T 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_MISSING_SIGUSR2 #define PETSC_MISSING_SIGUSR2 1 #endif #ifndef PETSC_MISSING_SIGURG #define PETSC_MISSING_SIGURG 1 #endif #ifndef PETSC_MISSING_SIGPIPE #define PETSC_MISSING_SIGPIPE 1 #endif #ifndef PETSC_MISSING_SIGHUP #define PETSC_MISSING_SIGHUP 1 #endif #ifndef PETSC_MISSING_SIGSTOP #define PETSC_MISSING_SIGSTOP 1 #endif #ifndef PETSC_MISSING_SIGSYS #define PETSC_MISSING_SIGSYS 1 #endif #ifndef PETSC_MISSING_SIGCONT #define PETSC_MISSING_SIGCONT 1 #endif #ifndef PETSC_HAVE_WSAGETLASTERROR #define PETSC_HAVE_WSAGETLASTERROR 1 #endif #ifndef PETSC_HAVE_CLOSESOCKET #define PETSC_HAVE_CLOSESOCKET 1 #endif #ifndef PETSC_MISSING_SIGTSTP #define PETSC_MISSING_SIGTSTP 1 #endif #ifndef PETSC_MISSING_SIGCHLD #define PETSC_MISSING_SIGCHLD 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_MISSING_SIGUSR1 #define PETSC_MISSING_SIGUSR1 1 #endif #ifndef PETSC_MISSING_SIGTRAP #define PETSC_MISSING_SIGTRAP 1 #endif #ifndef PETSC_MISSING_SIGQUIT #define PETSC_MISSING_SIGQUIT 1 #endif #ifndef PETSC_MISSING_SIGBUS #define PETSC_MISSING_SIGBUS 1 #endif #ifndef PETSC_HAVE_WINSOCK2_H #define PETSC_HAVE_WINSOCK2_H 1 #endif #ifndef PETSC_MISSING_SIGALRM #define PETSC_MISSING_SIGALRM 1 #endif #ifndef PETSC_NEEDS_UTYPE_TYPEDEFS #define PETSC_NEEDS_UTYPE_TYPEDEFS 1 #endif #ifndef PETSC_MISSING_SIGKILL #define PETSC_MISSING_SIGKILL 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #endif **** C specific Configure header /tmp/petsc-1uHnv2/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN typedef int int32_t; typedef int mode_t; typedef int pid_t; #if defined(__cplusplus) extern "C" { #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); } #else #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Fortran error! mpi_init() could not be located! ******************************************************************************* File "./config/configure.py", line 272, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py", line 935, in configure child.configure() File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 571, in configure self.executeTest(self.configureLibrary) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py", line 756, in configureLibrary self.executeTest(self.FortranMPICheck) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py", line 672, in FortranMPICheck raise RuntimeError('Fortran error! mpi_init() could not be located!') ================================================================================ Finishing Configure Run at Fri Jan 31 11:54:56 2014 ================================================================================ From balay at mcs.anl.gov Fri Jan 31 14:05:56 2014 From: balay at mcs.anl.gov (Satish Balay) Date: Fri, 31 Jan 2014 14:05:56 -0600 Subject: [petsc-users] How can PETSc configure with MSMPI In-Reply-To: <52EC00F8.6020701@gmail.com> References: <52EB0F87.2040208@gmail.com> <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> <52EB5936.3010306@gmail.com> <52EBDC17.90605@gmail.com> <52EC00F8.6020701@gmail.com> Message-ID: Try: --with-mpi-lib="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib" Satish On Fri, 31 Jan 2014, Danyang Su wrote: > On 31/01/2014 9:23 AM, Danyang Su wrote: > > On 31/01/2014 8:41 AM, Satish Balay wrote: > > > Try: > > > > > > --with-mpi-include=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ > > > R2/Inc > > > --with-mpi-lib=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ > > > R2/Lib/amd64/msmpi.lib > > ******************************************************************************* > > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > > details): > > ------------------------------------------------------------------------------- > > > > --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', > > '2008', 'R2/Lib/amd64/msmpi.lib'] and > > --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 > > R2/Inc'] did not work > > ******************************************************************************* > > > > It's this due to the blank space in the path? Maybe I can reinstall HPC > > package to another destination without blank space in the path. > After reinstall Microsoft HPC in C:\MSHPC\MicrosoftHPCPack2012, I configure > PETSc installation with > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadcomm > --with-openmp --with-mpi-include="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc" > --with-mpi-lib="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib" > > The error is as follows: > > ******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > details): > ------------------------------------------------------------------------------- > Fortran error! mpi_init() could not be located! > ******************************************************************************* > > > > Thanks, > > > > Danyang > > > > > > Satish > > > > > > > > > On Fri, 31 Jan 2014, Danyang Su wrote: > > > > > > > Hi Barry, > > > > > > > > The configure.log has been attached. I can configure with MPICH2 before. > > > > There > > > > are three MPI implementations (MPICH2, Intel MPI and MSMPI) in my > > > > computer, > > > > the intel mpi distribution comes along with the installation of Intel > > > > Parallel > > > > Studio. The MPICH2 and MSMPI is installed separately. Now I have > > > > uninstalled > > > > MPICH2 and there is only MSMPI (with sdk) and Intel MPI distribution. > > > > The system is WIN7 X64 Pro. > > > > > > > > Thanks, > > > > > > > > Danyang > > > > > > > > On 30/01/2014 7:40 PM, Barry Smith wrote: > > > > > We need configure.log > > > > > > > > > > On Jan 30, 2014, at 8:50 PM, Danyang Su wrote: > > > > > > > > > > > Hi All, > > > > > > > > > > > > When configure petsc with msmpi > > > > > > > > > > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > > > > --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco > > > > > > mm --with-openmp --with-mpi-include="/cygdrive/c/Program > > > > > > Files/Microsoft > > > > > > HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog > > > > > > ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" > > > > > > > > > > > > I get the following error > > > > > > > > > > > > --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', > > > > > > 'Pack', > > > > > > '2008', 'R2/Lib/amd64/msmpi.lib'] and > > > > > > --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack > > > > > > 2008 > > > > > > R2/Inc'] did not work > > > > > > > > > > > > Thanks, > > > > > > > > > > > > Danyang > > > > > > > > > > > > > From danyang.su at gmail.com Fri Jan 31 15:01:45 2014 From: danyang.su at gmail.com (Danyang Su) Date: Fri, 31 Jan 2014 13:01:45 -0800 Subject: [petsc-users] How can PETSc configure with MSMPI In-Reply-To: References: <52EB0F87.2040208@gmail.com> <397B1207-5499-4E71-9CFA-CAAFF343E30D@mcs.anl.gov> <52EB5936.3010306@gmail.com> <52EBDC17.90605@gmail.com> <52EC00F8.6020701@gmail.com> Message-ID: <52EC0F39.80509@gmail.com> On 31/01/2014 12:05 PM, Satish Balay wrote: > Try: > --with-mpi-lib="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- External package threadcomm does not work with Microsoft compilers ******************************************************************************* > > Satish > > > On Fri, 31 Jan 2014, Danyang Su wrote: > >> On 31/01/2014 9:23 AM, Danyang Su wrote: >>> On 31/01/2014 8:41 AM, Satish Balay wrote: >>>> Try: >>>> >>>> --with-mpi-include=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ >>>> R2/Inc >>>> --with-mpi-lib=/cygdrive/c/Program\ Files/Microsoft\ HPC\ Pack\ 2008\ >>>> R2/Lib/amd64/msmpi.lib >>> ******************************************************************************* >>> >>> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for >>> details): >>> ------------------------------------------------------------------------------- >>> >>> --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', 'Pack', >>> '2008', 'R2/Lib/amd64/msmpi.lib'] and >>> --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack 2008 >>> R2/Inc'] did not work >>> ******************************************************************************* >>> >>> It's this due to the blank space in the path? Maybe I can reinstall HPC >>> package to another destination without blank space in the path. >> After reinstall Microsoft HPC in C:\MSHPC\MicrosoftHPCPack2012, I configure >> PETSc installation with >> >> ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' >> --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadcomm >> --with-openmp --with-mpi-include="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc" >> --with-mpi-lib="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib" >> >> The error is as follows: >> >> ******************************************************************************* >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for >> details): >> ------------------------------------------------------------------------------- >> Fortran error! mpi_init() could not be located! >> ******************************************************************************* >>> Thanks, >>> >>> Danyang >>>> Satish >>>> >>>> >>>> On Fri, 31 Jan 2014, Danyang Su wrote: >>>> >>>>> Hi Barry, >>>>> >>>>> The configure.log has been attached. I can configure with MPICH2 before. >>>>> There >>>>> are three MPI implementations (MPICH2, Intel MPI and MSMPI) in my >>>>> computer, >>>>> the intel mpi distribution comes along with the installation of Intel >>>>> Parallel >>>>> Studio. The MPICH2 and MSMPI is installed separately. Now I have >>>>> uninstalled >>>>> MPICH2 and there is only MSMPI (with sdk) and Intel MPI distribution. >>>>> The system is WIN7 X64 Pro. >>>>> >>>>> Thanks, >>>>> >>>>> Danyang >>>>> >>>>> On 30/01/2014 7:40 PM, Barry Smith wrote: >>>>>> We need configure.log >>>>>> >>>>>> On Jan 30, 2014, at 8:50 PM, Danyang Su wrote: >>>>>> >>>>>>> Hi All, >>>>>>> >>>>>>> When configure petsc with msmpi >>>>>>> >>>>>>> ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' >>>>>>> --with-cxx='win32fe cl' --download-f-blas-lapack --with-threadco >>>>>>> mm --with-openmp --with-mpi-include="/cygdrive/c/Program >>>>>>> Files/Microsoft >>>>>>> HPC Pack 2008 R2/Inc" --with-mpi-lib="/cygdrive/c/Prog >>>>>>> ram Files/Microsoft HPC Pack 2008 R2/Lib/amd64/msmpi.lib" >>>>>>> >>>>>>> I get the following error >>>>>>> >>>>>>> --with-mpi-lib=['/cygdrive/c/Program', 'Files/Microsoft', 'HPC', >>>>>>> 'Pack', >>>>>>> '2008', 'R2/Lib/amd64/msmpi.lib'] and >>>>>>> --with-mpi-include=['/cygdrive/c/Program Files/Microsoft HPC Pack >>>>>>> 2008 >>>>>>> R2/Inc'] did not work >>>>>>> >>>>>>> Thanks, >>>>>>> >>>>>>> Danyang >>>>> >> >> -------------- next part -------------- Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Fri Jan 31 12:14:48 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --download-f-blas-lapack --with-threadcomm --with-openmp --with-mpi-include=/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc --with-mpi-lib="/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib" --useThreads=0 Working directory: /cygdrive/c/cygwin/packages/petsc-dev Machine platform: ('CYGWIN_NT-6.1-WOW64', 'nwmop', '1.7.22(0.268/5/3)', '2013-07-22 17:06', 'i686', '') Python version: 2.7.3 (default, Dec 18 2012, 13:50:09) [GCC 4.5.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py:823) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:823) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gdb...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gdb...not found Checking for program /cygdrive/c/Windows/system32/gdb...not found Checking for program /cygdrive/c/Windows/gdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gdb...not found Checking for program /cygdrive/c/MinGW/bin/gdb...found Defined make macro "GDB" to "/cygdrive/c/MinGW/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dbx...not found Checking for program /cygdrive/c/Program Files 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program /cygdrive/c/Windows/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/xdb...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/xdb...not found Checking for program /cygdrive/c/MinGW/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/xdb...not found Checking for program /home/dsu/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/dsymutil...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/dsymutil...not found Checking for program /cygdrive/c/Windows/system32/dsymutil...not found Checking for program /cygdrive/c/Windows/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dsymutil...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/dsymutil...not found Checking for program /cygdrive/c/MinGW/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/dsymutil...not found Checking for program /home/dsu/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/git...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/git...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/git...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/git...not found Checking for program /cygdrive/c/Windows/system32/git...not found Checking for program /cygdrive/c/Windows/git...not found Checking for program /cygdrive/c/Windows/System32/Wbem/git...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/git...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/git...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/git...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/git...not found Checking for program /cygdrive/c/MinGW/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/git...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/git...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/git...not found Checking for program /home/dsu/git...not found ================================================================================ TEST configureMercurial from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.5.2) ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/cvs...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/cvs...not found Checking for program /cygdrive/c/Windows/system32/cvs...not found Checking for program /cygdrive/c/Windows/cvs...not found Checking for program /cygdrive/c/Windows/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/cvs...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/cvs...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/cvs...not found Checking for program /cygdrive/c/MinGW/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/cvs...not found Checking for program /home/dsu/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/svn...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/svn...not found Checking for program /cygdrive/c/Windows/system32/svn...not found Checking for program /cygdrive/c/Windows/svn...not found Checking for program /cygdrive/c/Windows/System32/Wbem/svn...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/svn...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/svn...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/svn...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/svn...not found Checking for program /cygdrive/c/MinGW/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/svn...found Defined make macro "SVN" to "svn" Executing: svn --version -q stdout: 1.8.3 ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/autoreconf...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/autoreconf...not found Checking for program /cygdrive/c/Windows/system32/autoreconf...not found Checking for program /cygdrive/c/Windows/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/Wbem/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/autoreconf...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/autoreconf...not found Checking for program /cygdrive/c/MinGW/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/autoreconf...not found Checking for program /home/dsu/autoreconf...not found ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-WwR5UX All intermediate test results are stored in /tmp/petsc-WwR5UX/config.programs Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-WwR5UX/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-WwR5UX/config.programs/diff1" "/tmp/petsc-WwR5UX/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/dsu/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jan, 30, 2014" #define PETSC_VERSION_GIT "v3.4.3-2414-g135c7cd" #define PETSC_VERSION_DATE_GIT "2014-01-29 17:41:55 -0700" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/cygdrive/c/cygwin/packages/petsc-dev" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-mswin-c-debug"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /cygdrive/c/cygwin/packages/petsc-dev/arch-mswin-c-debug/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1500) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1500) **** printenv **** BIN_ROOT=C:\Program Files (x86)\Intel\Composer XE 2013\bin\ LIB=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\lib\x64;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\lib\intel64;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\lib\intel64; VS100COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\ COMPUTERNAME=NWMOP SCRIPT_NAME=compilervars_arch.bat ADVISOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Advisor XE 2013\.\ !C:=C:\Program Files (x86)\Intel\Composer XE 2013 WIN_TITLE_ARCH=Intel(R) 64 PRODUCT_NAME=Intel Composer XE 2013 CCP_INC=C:\MSHPC\MicrosoftHPCPack2012SDK\Include\ INFOPATH=/usr/local/info:/usr/share/info:/usr/info: SHELL=/bin/bash CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files USERDOMAIN=nwmop FrameworkVersion64=v4.0.30319 MANPATH=/usr/local/man:/usr/share/man:/usr/man: FrameworkDir=C:\Windows\Microsoft.NET\Framework64 CCP_LIB64=C:\MSHPC\MicrosoftHPCPack2012SDK\Lib\amd64\ ARCH_PATH_MPI=em64t KMP_AFFINITY=verbose,granularity=thread,compact COMSPEC=C:\Windows\system32\cmd.exe WIN_TITLE_VS=Visual Studio 2010 ARCH_PATH=intel64 TARGET_ARCH=intel64 MOZ_PLUGIN_PATH=C:\Program Files (x86)\PDFlite\ HOMEDRIVE=C: MKLROOT=C:\Program Files (x86)\Intel\Composer XE 2013\mkl FrameworkVersion=v4.0.30319 SYSTEMDRIVE=C: HOSTNAME=nwmop PETSC_ARCH=arch-mswin-c-debug PROCESSOR_LEVEL=6 OS=Windows_NT C_INCLUDE_PATH=C:\MinGW\include PRODUCT_NAME_FULL=Intel(R) Composer XE 2013 Update 5 (package 198) TARGET_VS=vs2010 INTEL_DEV_REDIST=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\ IFORT_COMPILER14=C:\Program Files (x86)\Intel\Composer XE 2013 SP1\ CommandPromptType=Native USER=dsu IFORT_COMPILER13=C:\Program Files (x86)\Intel\Composer XE 2013\ SYSTEMROOT=C:\Windows PS1=\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ tmp=C:\Users\dsu\AppData\Local\Temp TEMP=/tmp SHLVL=1 VISUALSVN_SERVER=C:\Program Files (x86)\VisualSVN Server\ PETSC_DIR=/cygdrive/c/cygwin/packages/petsc-dev HOMEPATH=\Users\dsu WindowsSdkDir=C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\ ROOT=C:\Program Files (x86)\Intel\Composer XE 2013 LOGONSERVER=\\NWMOP CCP_JOBTEMPLATE=Default C_TARGET_ARCH=intel64 MSVS_VAR_SCRIPT="C:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\..\..\VC\vcvarsall.bat" PRINTER=HP Color LaserJet Pro MFP M177 PCLmS INSPECTOR_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ SESSIONNAME=Console INCLUDE=C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include;C:\Program Files (x86)\Intel\Composer XE 2013\compiler\include\intel64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\include;C:\Program Files (x86)\Intel\Composer XE 2013\mkl\include; PATH_PHAST=C:\Program Files (x86)\USGS\phast-2.4.1-7430\\bin APPDATA=C:\Users\dsu\AppData\Roaming OMP_NUM_THREADS=6 VBOX_INSTALL_PATH=C:\Program Files\Oracle\VirtualBox\ CCP_HOME=C:\MSHPC\MicrosoftHPCPack2012\ TMP=/tmp PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ INTEL_LICENSE_FILE=C:\Program Files (x86)\Common Files\Intel\Licenses COMMONPROGRAMFILES=C:\Program Files (x86)\Common Files HOME=/home/dsu MIC_LD_LIBRARY_PATH=C:\Program Files (x86)\Common Files\Intel\Shared Libraries\compiler\lib\mic LANG=en_US.UTF-8 LIBRARY_PATH=C:\MinGW\lib ProgramData=C:\ProgramData PROCESSOR_ARCHITECTURE=x86 ALLUSERSPROFILE=C:\ProgramData _=./configure BUNDLE_NAME=Intel(R) Parallel Studio XE 2013 ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=dsu FrameworkDIR64=C:\Windows\Microsoft.NET\Framework64 PROMPT=$P$G PETSC_DIR2=/cygdrive/c/cygwin/packages/petsc-3.4.3 PETSC_ARCH3=arch-mswin-c-optimized INSPECTOR_XE_2013_DIR=C:\Program Files (x86)\Intel\Inspector XE 2013\ PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC CommonProgramW6432=C:\Program Files\Common Files WINDIR=C:\Windows Framework35Version=v3.5 temp=C:\Users\dsu\AppData\Local\Temp Platform=X64 NUMBER_OF_PROCESSORS=12 CCP_LIB32=C:\MSHPC\MicrosoftHPCPack2012SDK\Lib\i386\ PROCESSOR_ARCHITEW6432=AMD64 WIN_TITLE=Intel Composer XE 2013 Intel(R) 64 Visual Studio 2010 TARGET_VS_ARCH=amd64 MSMPI_INC=C:\MSHPC\MicrosoftHPCPack2012\Inc\ PUBLIC=C:\Users\Public USERPROFILE=C:\Users\dsu LIBPATH=C:\Windows\Microsoft.NET\Framework64\v4.0.30319;C:\Windows\Microsoft.NET\Framework64\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ATLMFC\LIB\amd64; PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 45 Stepping 7, GenuineIntel PROGRAMFILES=C:\Program Files (x86) PROCESSOR_REVISION=2d07 PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32:/cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32:/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/TEC100/BIN:/cygdrive/c/Program Files (x86)/CMake 2.8/bin:/cygdrive/c/Program Files/doxygen/bin:/cygdrive/c/Program Files (x86)/Graphviz 2.28/bin:/cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin:/cygdrive/c/MinGW/bin:/cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/VisualSVN/bin:/cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt TERM=cygwin TZ=America/Vancouver CCP_SDK=C:\MSHPC\MicrosoftHPCPack2012SDK\ VSINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\ VTUNE_AMPLIFIER_XE_2013_DIR=C:\Program Files (x86)\Intel\VTune Amplifier XE 2013\ !::=::\ LOCALAPPDATA=C:\Users\dsu\AppData\Local MSMPI_LIB64=C:\MSHPC\MicrosoftHPCPack2012\Lib\amd64\ TEC100HOME=C:\Program Files\TEC100 FP_NO_HOST_CHECK=NO OLDPWD=/home/dsu PWD=/cygdrive/c/cygwin/packages/petsc-dev MSMPI_LIB32=C:\MSHPC\MicrosoftHPCPack2012\Lib\i386\ VCINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 10.0\VC\ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1507) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1472) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1491) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1491) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:400) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:400) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:410) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:410) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:526) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-WwR5UX/config.setCompilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:561) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:561) Locate a functional C preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.SET\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.SET\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:595) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:595) Locate a functional CUDA compiler Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/nvcc...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/nvcc...not found Checking for program /cygdrive/c/Windows/system32/nvcc...not found Checking for program /cygdrive/c/Windows/nvcc...not found Checking for program /cygdrive/c/Windows/System32/Wbem/nvcc...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/nvcc...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/nvcc...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/nvcc...not found Checking for program /cygdrive/c/MinGW/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/nvcc...not found Checking for program /home/dsu/nvcc...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:633) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:633) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:736) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:736) Locate a functional Cxx compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXX" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:774) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:774) Locate a functional Cxx preprocessor Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "CXXCPP" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.SET\\conftest.cc" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\conffix.h" extern "C" { } #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.setcompilers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.SET\\conftest.cc" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\cstdlib" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" namespace vc_attributes { #line 55 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum YesNoMaybe { No = 0x0fff0001, Maybe = 0x0fff0010, Yes = 0x0fff0100 }; typedef enum YesNoMaybe YesNoMaybe; enum AccessType { NoAccess = 0, Read = 1, Write = 2, ReadWrite = 3 }; typedef enum AccessType AccessType; [repeatable] [source_annotation_attribute( Parameter )] struct PreAttribute { PreAttribute(); #line 85 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostAttribute { PostAttribute(); #line 116 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; YesNoMaybe Valid; YesNoMaybe Null; YesNoMaybe Tainted; AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; YesNoMaybe NullTerminated; YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( Parameter )] struct FormatStringAttribute { FormatStringAttribute(); #line 147 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [repeatable] [source_annotation_attribute( ReturnValue )] struct InvalidCheckAttribute { InvalidCheckAttribute(); #line 159 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" long Value; }; [source_annotation_attribute( Method )] struct SuccessAttribute { SuccessAttribute(); #line 169 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" const wchar_t* Condition; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreBoundAttribute { PreBoundAttribute(); #line 180 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostBoundAttribute { PostBoundAttribute(); #line 190 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; }; [repeatable] [source_annotation_attribute( Parameter )] struct PreRangeAttribute { PreRangeAttribute(); #line 200 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; [repeatable] [source_annotation_attribute( Parameter|ReturnValue )] struct PostRangeAttribute { PostRangeAttribute(); #line 212 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" }; #line 222 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef ::vc_attributes::YesNoMaybe SA_YesNoMaybe; const ::vc_attributes::YesNoMaybe SA_Yes = ::vc_attributes::Yes; const ::vc_attributes::YesNoMaybe SA_No = ::vc_attributes::No; const ::vc_attributes::YesNoMaybe SA_Maybe = ::vc_attributes::Maybe; typedef ::vc_attributes::AccessType SA_AccessType; const ::vc_attributes::AccessType SA_NoAccess = ::vc_attributes::NoAccess; const ::vc_attributes::AccessType SA_Read = ::vc_attributes::Read; const ::vc_attributes::AccessType SA_Write = ::vc_attributes::Write; const ::vc_attributes::AccessType SA_ReadWrite = ::vc_attributes::ReadWrite; typedef ::vc_attributes::PreAttribute SA_Pre; typedef ::vc_attributes::PostAttribute SA_Post; typedef ::vc_attributes::FormatStringAttribute SA_FormatString; typedef ::vc_attributes::InvalidCheckAttribute SA_InvalidCheck; typedef ::vc_attributes::SuccessAttribute SA_Success; typedef ::vc_attributes::PreBoundAttribute SA_PreBound; typedef ::vc_attributes::PostBoundAttribute SA_PostBound; typedef ::vc_attributes::PreRangeAttribute SA_PreRange; typedef ::vc_attributes::PostRangeAttribute SA_PostRange; #line 266 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:883) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:883) Locate a functional Fortran compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "FC" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:902) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Make sure fortran comment "!" works Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:965) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:965) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -PIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting C linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -fPIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting C linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected C compiler flag -fPIC because linker cannot handle it Trying C compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -KPIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting C linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected C compiler flag -KPIC because linker cannot handle it Trying C compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -qpic /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting C linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected C compiler flag -qpic because linker cannot handle it Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -PIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejecting Cxx linker flag -PIC due to cl : Command line warning D9002 : ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -fPIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejecting Cxx linker flag -fPIC due to cl : Command line warning D9002 : ignoring unknown option '-fPIC' Rejected Cxx compiler flag -fPIC because linker cannot handle it Trying Cxx compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -KPIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejecting Cxx linker flag -KPIC due to cl : Command line warning D9002 : ignoring unknown option '-KPIC' Rejected Cxx compiler flag -KPIC because linker cannot handle it Trying Cxx compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -qpic /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejecting Cxx linker flag -qpic due to cl : Command line warning D9002 : ignoring unknown option '-qpic' Rejected Cxx compiler flag -qpic because linker cannot handle it Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -PIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -PIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/PIC' Rejecting FC linker flag -PIC due to ifort: command line warning #10006: ignoring unknown option '/PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -fPIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejecting FC linker flag -fPIC due to ifort: command line warning #10006: ignoring unknown option '/fPIC' Rejected FC compiler flag -fPIC because linker cannot handle it Trying FC compiler flag -KPIC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -KPIC /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejecting FC linker flag -KPIC due to ifort: command line warning #10006: ignoring unknown option '/KPIC' Rejected FC compiler flag -KPIC because linker cannot handle it Trying FC compiler flag -qpic Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -qpic /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/qpic' Rejecting FC linker flag -qpic due to ifort: command line warning #10006: ignoring unknown option '/qpic' Rejected FC compiler flag -qpic because linker cannot handle it Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- c Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/tmp/petsc-WwR5UX/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/tmp/petsc-WwR5UX/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar cr /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/tmp/petsc-WwR5UX/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/tmp/petsc-WwR5UX/config.setCompilers -lconf1 stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconf1.lib : warning LNK4003: invalid library format; library ignored conftest.obj : error LNK2019: unresolved external symbol foo referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar -X64 cr /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar -X64 cr /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.23.52.20130309 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /usr/bin/ar -X64 cr /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 256 stderr: /usr/bin/ar: invalid option -- X Usage: /usr/bin/ar [emulation options] [-]{dmpqrstx}[abcDfilMNoPsSTuvV] [member-name] [count] archive-file file... /usr/bin/ar -M [ - read options from --target=BFDNAME - specify the target object format as BFDNAME emulation options: No emulation specific options /usr/bin/ar: supported targets: pe-i386 pei-i386 elf32-i386 elf32-little elf32-big srec symbolsrec verilog tekhex binary ihex Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a -P512" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe tlib -a -P512 /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Possible ERROR while running archiver: exit code 25600 Archiver is not functional Defined make macro "FAST_AR_FLAGS" to "-a" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/win32fe...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/win32fe...not found Checking for program /cygdrive/c/Windows/system32/win32fe...not found Checking for program /cygdrive/c/Windows/win32fe...not found Checking for program /cygdrive/c/Windows/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/win32fe...not found Checking for program /cygdrive/c/MinGW/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/win32fe...not found Checking for program /home/dsu/win32fe...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "AR" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Checking for program /usr/local/bin/true...not found Checking for program /usr/bin/true...found Defined make macro "RANLIB" to "/usr/bin/true" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a /tmp/petsc-WwR5UX/config.setCompilers/conf1.o Executing: /usr/bin/true /tmp/petsc-WwR5UX/config.setCompilers/libconf1.a Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/tmp/petsc-WwR5UX/config.setCompilers -lconf1 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1181: cannot open input file 'libconf1.lib'Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/tmp/petsc-WwR5UX/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "-a" Defined make macro "AR_LIB_SUFFIX" to "lib" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1208) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1208) Check that the linker can produce shared libraries Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -shared /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/libconftest.so /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-dynamic'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -dynamic /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-dynamic' Rejecting C linker flag -dynamic due to cl : Command line warning D9002 : ignoring unknown option '-dynamic' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/libconftest.so /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-qmkshrobj'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -qmkshrobj /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Rejecting C linker flag -qmkshrobj due to cl : Command line warning D9002 : ignoring unknown option '-qmkshrobj' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/libconftest.so /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.so : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl using flags ['-shared'] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -shared /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-shared' Rejecting C linker flag -shared due to cl : Command line warning D9002 : ignoring unknown option '-shared' Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/libconftest.dll /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LIBCMT.lib(crt0.obj) : error LNK2019: unresolved external symbol main referenced in function __tmainCRTStartup C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\libconftest.dll : fatal error LNK1120: 1 unresolved externals Deleting "LD_SHARED" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib using flags [] Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe...found Defined make macro "LD_SHARED" to "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-WwR5UX/config.setCompilers/libconftest.lib /tmp/petsc-WwR5UX/config.setCompilers/conftest.o ; /usr/bin/true /tmp/petsc-WwR5UX/config.setCompilers/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/tmp/petsc-WwR5UX/config.setCompilers -lconftest Using shared linker /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib with flags [] and library extension lib Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1286) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1286) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying C linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-rpath, Trying C linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting C linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected C linker flag -R Trying C linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting C linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected C linker flag -rpath Trying C linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected C linker flag -Wl,-R, Popping language C Pushing language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying Cxx linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-rpath, Trying Cxx linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting Cxx linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-R/cygdrive/c/cygwin/packages/petsc-dev' Rejected Cxx linker flag -R Trying Cxx linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting Cxx linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to cl : Command line warning D9002 : ignoring unknown option '-rpath' cl : Command line warning D9024 : unrecognized source file type 'C:\cygwin\packages\petsc-dev', object file assumed LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected Cxx linker flag -rpath Trying Cxx linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Possible ERROR while running linker: exit code 512 stdout: cl : Command line error D8021 : invalid numeric argument '/Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev' Rejecting linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejected Cxx linker flag -Wl,-R, Popping language Cxx Pushing language FC Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -V stdout: cl : Command line error D8004 : '/V' requires an argument Trying FC linker flag -Wl,-rpath, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-rpath,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-rpath, Trying FC linker flag -R Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -R/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejecting FC linker flag -R/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/R/cygdrive/c/cygwin/packages/petsc-dev' Rejected FC linker flag -R Trying FC linker flag -rpath Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -rpath /cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Possible ERROR while running linker: exit code 40192 stdout: ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejecting linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to nonzero status from link Rejecting FC linker flag -rpath /cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10006: ignoring unknown option '/rpath' ifort: command line warning #10161: unrecognized source type 'C:\cygwin\packages\petsc-dev'; object file assumed ipo: error #11018: Cannot open C:\cygwin\packages\petsc-dev LINK : fatal error LNK1181: cannot open input file 'C:\cygwin\packages\petsc-dev.obj' Rejected FC linker flag -rpath Trying FC linker flag -Wl,-R, Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejecting FC linker flag -Wl,-R,/cygdrive/c/cygwin/packages/petsc-dev due to ifort: command line warning #10157: ignoring option '/W'; argument is of wrong type Rejected FC linker flag -Wl,-R, Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1321) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1321) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1370) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1370) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-WwR5UX/config.headers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 21 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Dynamic loading disabled since dlfcn.h was missing ================================================================================ TEST output from config.setCompilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/setCompilers.py:1416) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Output module data as defines and substitutions Substituting "CC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "" Substituting "SHARED_LIBRARY_FLAG" with "" Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) ================================================================================ TEST configureSerializedFunctions from PETSc.utilities.sharedLibraries(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -MT Trying C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -wd4996 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying C compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Z7 Popping language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nMicrosoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -MT Trying Cxx compiler flag -GR Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -GR Trying Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -EHsc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= cl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Microsoft (R) C/C++ Optimizing Compiler Version 16.00.30319.01 for x64 Copyright (C) Microsoft Corporation. All rights reserved. C/C++ COMPILER OPTIONS -OPTIMIZATION- /O1 minimize space /O2 maximize speed /Ob inline expansion (default n=0) /Od disable optimizations (default) /Og enable global optimization /Oi[-] enable intrinsic functions /Os favor code space /Ot favor code speed /Ox maximum optimizations /favor: select processor to optimize for, one of: blend - a combination of optimizations for several different x64 processors AMD64 - 64-bit AMD processors INTEL64 - Intel(R)64 architecture processors -CODE GENERATION- /GF enable read-only string pooling /Gm[-] enable minimal rebuild /Gy[-] separate functions for linker /GS[-] enable security checks /GR[-] enable C++ RTTI /GX[-] enable C++ EH (same as /EHsc) /EHs enable C++ EH (no SEH exceptions) /EHa enable C++ EH (w/ SEH exceptions) /EHc extern "C" defaults to nothrow /fp: choose floating-point model: except[-] - consider floating-point exceptions when generating code fast - "fast" floating-point model; results are less predictable precise - "precise" floating-point model; results are predictable strict - "strict" floating-point model (implies /fp:except) /Qfast_transcendentals generate inline FP intrinsics even with /fp:except /GL[-] enable link-time code generation /GA optimize for Windows Application /Ge force stack checking for all funcs /Gs[num] control stack checking calls /Gh enable _penter function call /GH enable _pexit function call /GT generate fiber-safe TLS accesses /RTC1 Enable fast checks (/RTCsu) /RTCc Convert to smaller type checks /RTCs Stack Frame runtime checking /RTCu Uninitialized local usage checks /clr[:option] compile for common language runtime, where option is: pure - produce IL-only output file (no native executable code) safe - produce IL-only verifiable output file oldSyntax - accept the Managed Extensions syntax from Visual C++ 2002/2003 initialAppDomain - enable initial AppDomain behavior of Visual C++ 2002 noAssembly - do not produce an assembly /homeparams Force parameters passed in registers to be written to the stack /GZ Enable stack checks (/RTCs) /arch:AVX enable use of Intel(R) Advanced Vector Extensions instructions -OUTPUT FILES- /Fa[file] name assembly listing file /FA[scu] configure assembly listing /Fd[file] name .PDB file /Fe name executable file /Fm[file] name map file /Fo name object file /Fp name precompiled header file /Fr[file] name source browser file /FR[file] name extended .SBR file /Fi[file] name preprocessed file /doc[file] process XML documentation comments and optionally name the .xdc file -PREPROCESSOR- /AI add to assembly search path /FU forced using assembly/module /C don't strip comments /D{=|#} define macro /E preprocess to stdout /EP preprocess to stdout, no #line /P preprocess to file /Fx merge injected code to file /FI name forced include file /U remove predefined macro /u remove all predefined macros /I add to include search path /X ignore "standard places" -LANGUAGE- /Zi enable debugging information /Z7 enable old-style debug info /Zp[n] pack structs on n-byte boundary /Za disable extensions /Ze enable extensions (default) /Zl omit default library name in .OBJ /Zg generate function prototypes /Zs syntax check only /vd{0|1|2} disable/enable vtordisp /vm type of pointers to members /Zc:arg1[,arg2] C++ language conformance, where arguments can be: forScope[-] - enforce Standard C++ for scoping rules wchar_t[-] - wchar_t is the native type, not a typedef auto[-] - enforce the new Standard C++ meaning for auto trigraphs[-] - enable trigraphs (off by default) /openmp enable OpenMP 2.0 language extensions -MISCELLANEOUS- @ options response file /?, /help print this help message /bigobj generate extended object format /c compile only, no link /errorReport:option Report internal compiler errors to Microsoft none - do not send report prompt - prompt to immediately send report queue - at next admin logon, prompt to send report (default) send - send report automatically /FC use full pathnames in diagnostics /H max external name length /J default char type is unsigned /MP[n] use up to 'n' processes for compilation /nologo suppress copyright message /showIncludes show include file names /Tc compile file as .c /Tp compile file as .cpp /TC compile all files as .c /TP compile all files as .cpp /V set version string /w disable all warnings /wd disable warning n /we treat warning n as an error /wo issue warning n once /w set warning level 1-4 for n /W set warning level (default n=1) /Wall enable all warnings /WL enable one line diagnostics /WX treat warnings as errors /Yc[file] create .PCH file /Yd put debug info in every .OBJ /Yl[sym] inject .PCH ref for debug lib /Yu[file] use .PCH file /Y- disable all PCH options /Zm max memory alloc (% of default) /Wp64 enable 64 bit porting warnings -LINKING- /LD Create .DLL /LDd Create .DLL debug library /LN Create a .netmodule /F set stack size /link [linker options and libraries] /MD link with MSVCRT.LIB /MT link with LIBCMT.LIB /MDd link with MSVCRTD.LIB debug lib /MTd link with LIBCMTD.LIB debug lib Trying Cxx compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Z7 Trying Cxx compiler flag -Zm200 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Zm200 Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --version stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 getCompilerVersion: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM \nIntel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -MT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort --help stdout: Win32 Development Tool Front End, version 1.11.3 Mon, Jun 10, 2013 9:41:56 AM Usage: win32fe -- - must be the first argument to win32fe : {cl,icl,df,f90,ifl,bcc32,lib,tlib} cl: Microsoft 32-bit C/C++ Optimizing Compiler icl: Intel C/C++ Optimizing Compiler df: Compaq Visual Fortran Optimizing Compiler f90: Compaq Visual Fortran90 Optimizing Compiler ifl: Intel Fortran Optimizing Compiler ifort: Intel Fortran Optimizing Compiler nvcc: NVIDIA CUDA Compiler Driver bcc32: Borland C++ for Win32 lib: Microsoft Library Manager tlib: Borland Library Manager : --help: Output this help message and help for --path : specifies an addition to the PATH that is required (ex. the location of a required .dll) --use : specifies the variant of to use --verbose: Echo to stdout the translated commandline and other diagnostic information --version: Output version info for win32fe and --wait_for_debugger: Inserts an infinite wait after creation of and outputs PID so one can manually attach a debugger to the current process. In the debugger, one must set: tool::waitfordebugger = 0 to continue the execution normally. --win-l: For compilers, define -lfoo to link foo.lib instead of libfoo.lib --woff: Suppress win32fe specific warning messages ================================================================================= For compilers: win32fe will map the following to their native options: -c: Compile Only, generates an object file with .o extension This will invoke the compiler once for each file listed. -l: Link the file lib.lib or if using --win-l also, .lib -o : Output= context dependent -D: Define -I: Add to the include path -L: Add to the link path -g: Generate debug symbols in objects when specified for compilation, and in executables when specified for linking (some compilers specification at both times for full debugging support). -O: Enable compiletime and/or linktime optimizations. Ex: win32fe cl -g -c foo.c --verbose -Iinclude Note: win32fe will automatically find the system library paths and system include paths, relieving the user of the need to invoke a particular shell. ========================================================================= icl specific help: win32fe uses -nologo by default for nonverbose output. Use the flag: -logo to disable this feature. -g is identical to -Z7. -O is identical to -O2. ========================================================================= Intel(R) Visual Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 13.1.3.198 Build 20130607 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] [/link linker_options] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .i .i90), assembly (.asm), object (.obj), static library (.lib), or other linkable file linker_options represents zero or more linker options Notes ----- 1. Many FL32 options are supported; a warning is printed for unsupported options. 2. Intel Fortran compiler options may be placed in your ifort.cfg file. Some options listed are only available on a specific system i32 indicates the feature is available on systems based on IA-32 architecture i64em indicates the feature is available on systems using Intel(R) 64 architecture Compiler Option List -------------------- Optimization ------------ /O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit /O2 optimize for maximum speed (DEFAULT) /O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs /Ox enable maximum optimizations (same as /O2) /Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit (overrides /Ot) /Ot enable speed optimizations (overrides /Os) /Od disable optimizations /Oy[-] enable/disable using EBP as a general purpose register (no frame pointer) (i32 only) /fast enable /QxHOST /O3 /Qipo /Qprec-div- options set by /fast cannot be overridden with the exception of /QxHOST, list options separately to change behavior /Oa[-] assume no aliasing in program /Ow[-] assume no aliasing within functions, but assume aliasing across calls Code Generation --------------- /Qx generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option /Qinstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. /QxHost generate instructions for the highest instruction set and processor available on the compilation host machine /Qax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. /arch: generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions /Qinstruction: Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires /QxSSSE3_ATOM) /Qextend-arguments:[32|64] By default, unprototyped scalar integer arguments are passed in 32-bits (sign-extended if necessary). On Intel(R) 64, unprototyped scalar integer arguments may be extended to 64-bits. Interprocedural Optimization (IPO) ---------------------------------- /Qip[-] enable(DEFAULT)/disable single-file IP optimization within files /Qipo[n] enable multi-file IP optimization between files /Qipo-c generate a multi-file object file (ipo_out.obj) /Qipo-S generate a multi-file assembly file (ipo_out.asm) /Qip-no-inlining disable full and partial inlining /Qip-no-pinlining disable partial inlining /Qipo-separate create one object file for every source file (overrides /Qipo[n]) /Qipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- /Qunroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller /Qunroll-aggressive[-] enables more aggressive unrolling heuristics /Qscalar-rep[-] enable(DEFAULT)/disable scalar replacement (requires /O3) /Qpad[-] enable/disable(DEFAULT) changing variable and array memory layout /Qsafe-cray-ptr Cray pointers do not alias with other variables /Qansi-alias[-] enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules /Qcomplex-limited-range[-] enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. /reentrancy: specify whether the threaded, reentrant run-time support should be used Keywords: none (same as /noreentrancy), threaded, async /noreentrancy do not use threaded, reentrant run-time support /heap-arrays[:n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. /heap-arrays- temporary arrays are allocated on the stack (DEFAULT) /Qopt-multi-version-aggressive[-] enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement /Qopt-ra-region-strategy[:] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option /Qvec[-] enables(DEFAULT)/disables vectorization /Qvec-guard-write[-] enables cache/bandwidth optimization for stores under conditionals within vector loops /Qvec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel /Qopt-malloc-options:{0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory /Qopt-jump-tables: control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use /Qopt-jump-tables- to lower switch statements as chains of if-then-else constructs /Qopt-block-factor: specify blocking factor for loop blocking /Qopt-streaming-stores: specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores /Qmkl[:] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when /Qmkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries /Qimsl link to the International Mathematics and Statistics Library* (IMSL* library) /Qopt-subscript-in-range[-] assumes no overflows in the intermediate computation of the subscripts /Qcoarray[:shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit /Qcoarray-num-images:n set default number of coarray images /Qopt-matmul[-] replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at /O3 /Qparallel) /Qsimd[-] enables(DEFAULT)/disables vectorization using SIMD directive /Qguide-opts: tells the compiler to analyze certain code and generate recommendations that may improve optimizations /Qguide-file[:] causes the results of guide to be output to a file /Qguide-file-append[:] causes the results of guide to be appended to a file /Qguide[:] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) /Qguide-data-trans[:] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) /Qguide-par[:] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) /Qguide-vec[:] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) /Qguide-profile:<[file|dir]>[,[file|dir],...] specify a loop profiler data file (or set of files in a directory) when using the /Qguide option /Qopt-mem-layout-trans[:] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as /Qopt-mem-layout-trans-) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations /Qopt-prefetch[:n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. /Qopt-prefetch- disable(DEFAULT) prefetch insertion. Equivalent to /Qopt-prefetch:0 Profile Guided Optimization (PGO) --------------------------------- /Qprof-dir specify directory for profiling output files (*.dyn and *.dpi) /Qprof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory /Qprof-src-dir[-] specify whether directory names of sources should be considered when looking up profile records within the .dpi file /Qprof-file specify file name for profiling summary file /Qprof-data-order[-] enable/disable(DEFAULT) static data ordering with profiling /Qprof-func-order[-] enable/disable(DEFAULT) function ordering with profiling /Qprof-gen[:keyword] instrument program for profiling. Optional keyword may be srcpos or globdata /Qprof-gen- disable profiling instrumentation /Qprof-use[:] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool /Qprof-use- disable use of profiling information during optimization /Qcov-gen instrument program for profiling /Qcov-dir specify directory for profiling output files (*.dyn and *.dpi) /Qcov-file specify file name for profiling summary file /Qinstrument-functions[-] determine whether function entry and exit points are instrumented /Qprof-hotness-threshold: set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires /Qprof-use and /Qprof-func-order /Qprof-value-profiling:[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites /Qprofile-functions enable instrumentation in generated code for collecting function execution time profiles /Qprofile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops /Qprofile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- /Qvec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information n=6 indicate vectorized/non-vectorized loops with greater details and prohibiting data dependence information n=7 indicate vector code quality message ids and data values for vectorized loops /Qopt-report[:n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output /Qopt-report-file: specify the filename for the generated report /Qopt-report-phase: specify the phase that reports are generated against /Qopt-report-routine: reports on routines containing the given name /Qopt-report-help display the optimization phases available for reporting /Qtcheck[:mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level /Qtcollect[:] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library .lib is linked in the default being VT.lib (requires Intel(R) Trace Collector) /Qtcollect-filter:file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ /Qopenmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as /openmp) /Qopenmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) /Qopenmp-report{0|1|2} control the OpenMP parallelizer diagnostic level /Qopenmp-lib: choose which OpenMP library version to link with compat - use the Microsoft compatible OpenMP run-time libraries (DEFAULT) /Qopenmp-threadprivate: choose which threadprivate implementation to use compat - use the Microsoft compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) /Qparallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel /Qpar-report{0|1|2|3} control the auto-parallelizer diagnostic level /Qpar-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 /Qpar-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode /Qpar-schedule-static[:n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. /Qpar-schedule-static_balanced[:n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. /Qpar-schedule-static-steal[:n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads /Qpar-schedule-dynamic[:n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. /Qpar-schedule-guided[:n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. /Qpar-schedule-guided-analytical[:n] Divides iterations by using exponential distribution or dynamic distributions. /Qpar-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. /Qpar-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. /Qpar-adjust-stack perform fiber-based main thread stack adjustment /Qpar-affinity=[,...][,][,] tune application performance by setting different thread affinity /Qpar-num-threads= tune application performance by setting different number of threads /Qparallel-source-info[:n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as /Qparallel-source-info-) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information /Qpar same as /Qparallel Floating Point -------------- /fp: enable floating point model variation except[-] - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables /fp:precise /fp:except, disables contractions and enables pragma stdc fenv_access /Qfp-speculation: enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations /Qpc32 set internal FPU precision to 24 bit significand /Qprec improve floating-point precision (speed impact less than /Op) /Qprec-sqrt[-] determine if certain square root optimizations are enabled /Qprec-div[-] improve precision of FP divides (some speed impact) /Qfast-transcendentals[-] generate a faster version of the transcendental functions /Qfp-port[-] round fp results at assignments and casts (some speed impact) /Qfp-stack-check enable fp stack checking after every function/procedure call /Qrcd rounding mode to enable fast float-to-int conversions /rounding-mode:chopped set internal FPU rounding control to truncate /Qftz[-] enable/disable flush denormal results to zero /fpe:{0|1|3} specifies program-wide behavior on floating point exceptions /fpe-all:{0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets /assume:ieee_fpe_flags /[no]fltconsistency specify that improved floating-point consistency should be used /Qfma[-] enable/disable the combining of floating point multiplies and add/subtract operations /[no]recursive compile all procedures for possible recursive execution Inlining -------- /Ob control inline expansion: n=0 disable inlining (same as /inline:none) n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion /Qinline-min-size: set size limit for inlining small routines /Qinline-min-size- no size limit for inlining small routines /Qinline-max-size: set size limit for inlining large routines /Qinline-max-size- no size limit for inlining large routines /Qinline-max-total-size: maximum increase in size for inline function expansion /Qinline-max-total-size- no size limit for inline function expansion /Qinline-max-per-routine: maximum number of inline instances in any function /Qinline-max-per-routine- no maximum number of inline instances in any function /Qinline-max-per-compile: maximum number of inline instances in the current compilation /Qinline-max-per-compile- no maximum number of inline instances in the current compilation /Qinline-factor: set inlining upper limits by n percentage /Qinline-factor- do not set set inlining upper limits /Qinline-forceinline treat inline routines as forceinline /Qinline-dllimport allow(DEFAULT)/disallow functions declared DEC$ ATTRIBUTES DLLIMPORT to be inlined /Qinline-calloc directs the compiler to inline calloc() calls as malloc()/memset() /inline[:keyword] Specifies the level of inline function expansion keywords: all (same as /Ob2 /Ot), size (same as /Ob2 /Os) speed (same as /Ob2 /Ot), none or manual (same as /Ob0) Output, Debug, PCH ------------------ /c compile to object (.obj) only, do not link /nolink, /compile-only same as /c /S compile to assembly (.asm) only, do not link /FAs produce assembly file with optional source annotations /FAc produce assembly file with optional code annotations /FA produce assembly file /Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) /Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) /Fe[file] name executable file or directory /object: specify the name of the object file, or the directory to which object file(s) should be written. (e.g. /object:MYOBJ or /object:MYDIR\) /exe: specifies the name to be used for the built program (.exe) or dynamic-link (.dll) library /map: specify that a link map file should be generated /list: specify that a listing file should be generated /list-line-len:# overrides the default line length (80) in a listing file /list-page-len:# overrides the default page length (66) in a listing file /show: controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options /Zi, /ZI, /Z7 produce symbolic debug information in object file (implies /Od when another optimization option is not explicitly set) /debug[:keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info /nodebug do not enable debug information /debug-parameters[:keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as /nodebug-parameters) /nodebug-parameters do not output debug information for PARAMETERS /Qd-lines, /[no]d-lines compile debug statements (indicated by D in column 1) /pdbfile[:filename] specify that debug related information should be generated to a program database file /nopdbfile do not generate debug related information to a program database file /Qtrapuv trap uninitialized variables /RTCu report use of variable that was not initialized /Qmap-opts enable option mapping tool Preprocessor ------------ /D[{=|#}] define macro /define:symbol[=] same as /D /nodefines specifies that any /D macros go to the preprocessor only, and not to the compiler /U remove predefined macro /undefine: remove predefined macro (same as /U) /allow:nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments /E preprocess to stdout /EP preprocess to stdout, omitting #line directives /EP /P preprocess to file, omitting #line directives /P preprocess to file /preprocess-only same as /P /[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by /Qsave-temps. Default is /nokeep /fpp[n], /[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor /module:path specify path where mod files should be placed and first location to look for mod files /u remove all predefined macros /I add directory to include file search path /[no]include: same as /I /X remove standard directories from include file search path /[no]gen-dep[:filename] generate dependency information. If no filename is specified, output to stdout /gen-depformat:keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- /Qoption,, pass options to tool specified by /Qlocation,, set as the location of tool specified by Language -------- /[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize /assume: specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as /nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as /Qcommon-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_complex_align, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as /us), [no]std_intent_in, [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings /ccdefault: specify default carriage control for units 6 and * keywords: default, fortran, list or none /[no]check: check run-time conditions. Default is /nocheck keywords: all (same as /4Yb, /C), none (same as /nocheck, /4Nb), [no]arg_temp_created, [no]bounds (same as /CB), [no]format, [no]output_conversion, [no]pointer (same as /CA), [no]uninit (same as /CU), [no]stack /Qcommon-args assume "by reference" subprogram arguments may alias one another. Same as /assume:dummy_aliases /[no]extend-source[:] specify rightmost column for fixed form sources keywords: 72 (same as /noextend-source and /4L72), 80 (same as /4L80), 132 (same as /4L132. Default if you specify /extend-source without a keyword.) /fixed specify source files are in fixed format. Same as /FI and /4Nf /nofixed indicates free format /free specify source files are in free format. Same as /FR and /4Yf /nofree indicates fixed format /names: specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase /[no]pad-source, /Qpad-source[-] make compiler acknowledge blanks at the end of a line /stand[:] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as /4Ys), f95, f03, none (same as /nostand) /standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by /standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_intent_in, std_mod_proc_name, noold_ldout_format /syntax-only, /Zs perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- /w disable all warnings /W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as /warn:general) /warn: specifies the level of warning messages issued keywords: all, none (same as /nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage /nowarn suppress all warning messages /WB turn a compile-time bounds check into a warning /[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure /[no]gen-interfaces [[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved /error-limit: specify the maximum number of error-level or fatal-level compiler errors allowed /noerror-limit set no maximum number on error-level or fatal-level error messages /Qdiag-enable:[,,...] enable the specified diagnostics or diagnostic groups /Qdiag-disable:[,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc- {full|concise|precise} - perform static analysis and determine the analysis mode. Full mode - attempts to find all program weaknesses, even at the expense of more false positives. Concise mode - attempts to reduce false positives somewhat more than reducing false negatives. Precise mode - attempts to avoid all false positives Default: full if /Qdiag-enable:sc{[1|2|3]} is present; otherwise None (static analysis diagnostics are disabled). sc-include - perform source code analysis on include files sc-single-file - This option tells static analysis to process each file individually. Default: OFF sc-enums - This option tells static analysis to treat enumeration variables as known values equal to any one of the associated enumeration literals. Default: OFF sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. /Qdiag-error:[,,...] output the specified diagnostics or diagnostic groups as errors /Qdiag-warning:[,,...] output the specified diagnostics or diagnostic groups as warnings /Qdiag-remark:[,,...] output the the specified diagnostics or diagnostic groups as remarks /Qdiag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. /Qdiag-sc-dir: directory where diagnostics from static analysis are created, rather than current working directory. /Qdiag-file[:] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr /Qdiag-file-append[:] where diagnostics are emitted to. When already exists, output is appended to the file /Qdiag-id-numbers[-] enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form /Qdiag-error-limit: specify the maximum number of errors emitted Miscellaneous ------------- /[no]logo display compiler version information. /nologo disables the output /Qsox[:[,keyword]] enable saving of compiler options, version and additional information in the executable. Use /Qsox- to disable(DEFAULT) profile - include profiling data inline - include inlining information /bintext: place the string specified into the object file and executable /Qsave-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default /what display detailed compiler version information /watch: tells the driver to output processing information keywords: all, none (same as /nowatch), [no]source, [no]cmd [no]mic-cmd /nowatch suppress processing information output (DEFAULT) /Tf compile file as Fortran source /extfor: specify extension of file to be recognized as a Fortran file /extfpp: specify extension of file to be recognized as a preprocessor file /libdir[:keyword] control the library names that should be emitted into the object file keywords: all, none (same as /nolibdir), [no]automatic, [no]user /nolibdir no library names should be emitted into the object file /MP[] create multiple processes that can be used to compile large numbers of source files at the same time /bigobj generate objects with increased address capacity Data ---- /4I{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 /integer-size: specifies the default size of integer and logical variables size: 16, 32, 64 /4R{8|16} set default size of real to 8 or 16 bytes /real-size: specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 /Qautodouble same as /real-size:64 or /4R8 /double-size: defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 /[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision /[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants /auto make all local variables AUTOMATIC /Qauto-scalar make scalar local variables AUTOMATIC (DEFAULT) /Qsave save all variables (static allocation) (same as /noauto, opposite of /auto) /Qzero[-] enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized /Qdyncom make given common blocks dynamically-allocated /Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 /Zp16 DEFAULT) /[no]align analyze and reorder memory layout for variables and arrays /align: specify how data items are aligned keywords: all (same as /align), none (same as /noalign), [no]commons, [no]dcommons, [no]qcommons, [no]zcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, rec32byte, array8byte, array16byte, array32byte, array64byte, array128byte, array256byte, [no]records, [no]sequence /GS enable overflow security checks. /GS- disables (DEFAULT) /Qpatchable-addresses generate code such that references to statically assigned addresses can be patched with arbitrary 64-bit addresses. /Qfnalign[-] align the start of functions to an optimal machine-dependent value. When disabled (DEFAULT) align on a 2-byte boundary /Qfnalign:[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary /Qglobal-hoist[-] enable(DEFAULT)/disable external globals are load safe /Qkeep-static-consts[-] enable/disable(DEFAULT) emission of static const variables even when not referenced /Qnobss-init disable placement of zero-initialized variables in BSS (use DATA) /Qzero-initialized-in-bss[-] put explicitly zero initialized variables into the DATA section instead of the BSS section /convert: specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg /Qimf-absolute-error:value[:funclist] define the maximum allowable absolute error for math library function results value - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-accuracy-bits:bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results bits - a positive, floating-point number funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-arch-consistency:value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture value - true or false funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-max-error:ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results ulps - a positive, floating-point number conforming to the format [digits][.digits][{e|E}[sign]digits] funclist - optional comma separated list of one or more math library functions to which the attribute should be applied /Qimf-precision:value[:funclist] defines the accuracy (precision) for math library functions value - defined as one of the following values high - equivalent to max-error = 0.6 medium - equivalent to max-error = 4 (DEFAULT) low - equivalent to accuracy-bits = 11 (single precision); accuracy-bits = 26 (double precision) funclist - optional comma separated list of one or more math library functions to which the attribute should be applied Compatibility ------------- /fpscomp[:] specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as /nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals /nofpscomp no specific level of compatibility with Fortran PowerStation /f66 allow extensions that enhance FORTRAN-66 compatibility /f77rtl specify that the Fortran 77 specific run-time support should be used /nof77rtl disables /vms enable VMS I/O statement extensions /Qvc enable compatibility with a specific Microsoft* Visual Studio version 9 - Microsoft* Visual Studio 2008 compatibility 10 - Microsoft* Visual Studio 2010 compatibility 11 - Microsoft* Visual Studio 2012 compatibility Linking/Linker -------------- /link specify that all options following '/link' are for the linker /extlnk: specify extension of file to be passed directly to linker /F set the stack reserve amount specified to the linker /dbglibs use the debug version of runtime libraries, when appropriate /libs: specifies which type of run-time library to link to. keywords: static, dll, qwin, qwins /LD[d] produce a DLL instead of an EXE ('d' = debug version) /dll same as /LD /MD[d] use dynamically-loaded, multithread C runtime /MDs[d] use dynamically-loaded, singlethread Fortran runtime, and multithread C runtime /MT[d] use statically-linked, multithread C runtime (DEFAULT with Microsoft Visual Studio 2005 and later) /ML[d] use statically-linked, single thread C runtime (only valid in Microsoft Visual Studio 2003 environment) /MG, /winapp use Windows API runtime libraries /Zl omit library names from object file /threads specify that multi-threaded libraries should be linked against /nothreads disables multi-threaded libraries Deprecated Options ------------------ /Qinline-debug-info use /debug:inline-debug-info /Gf use /GF /ML[d] upgrade to /MT[d] /Quse-asm No replacement /Qprof-genx use /Qprof-gen:srcpos /Qdiag-enable:sv[] use /Qdiag-enable:sc[] /Qdiag-enable:sv-include use /Qdiag-enable:sc-include /Qdiag-sv use /Qdiag-enable:sc[] /Qdiag-sv-error use /Qdiag-disable:warning /Qdiag-sv-include use /Qdiag-enable:sc-include /Qdiag-sv-level No replacement /Qdiag-sv-sup use /Qdiag-disable:[,,...] /Qtprofile No replacement /arch:SSE use /arch:IA32 /QxK upgrade to /arch:SSE2 /QaxK upgrade to /arch:SSE2 /QxW use /arch:SSE2 /QaxW use /arch:SSE2 /QxN use /QxSSE2 /QaxN use /QaxSSE2 /QxP use /QxSSE3 /QaxP use /QaxSSE3 /QxT use /QxSSSE3 /QaxT use /QaxSSSE3 /QxS use /QxSSE4.1 /QaxS use /QaxSSE4.1 /QxH use /QxSSE4.2 /QaxH use /QaxSSE4.2 /QxO use /arch:SSE3 /Qvc7.1 No replacement /QIfist use /Qrcd /QxSSE3_ATOM use /QxSSSE3_ATOM /Qrct No replacement /Op use /fltconsistency /debug:partial No replacement /tune: use /Qx /architecture: use /arch: /1, /Qonetrip use /f66 /Fm use /map /Qcpp, /Qfpp use /fpp /Qdps use /altparam /Qextend-source use /extend-source /Qlowercase use /names:lowercase /Quppercase use /names:uppercase /Qvms use /vms /asmattr:keyword use /FA[c|s|cs] /noasmattr,/asmattr:none use /FA /asmfile use /Fa /automatic use /auto /cm use /warn:nousage /optimize:0 use /Od /optimize:1,2 use /O1 /optimize:3,4 use /O2 /optimize:5 use /O3 /source use /Tf /unix No replacement /us use /assume:underscore /unroll use /Qunroll /w90, /w95 No replacement /Zd use /debug:minimal /help, /? [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2013, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -Z7 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Z7 Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-WwR5UX/config.compilers Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(3) : error C2054: expected '(' to follow 'inline' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(3) : error C2085: 'foo' : not in formal parameter list C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.c(3) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static __inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static __inline Popping language C Defined "C_STATIC_INLINE" to "static __inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ================================================================================ TEST checkCLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -v -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' Popping language C compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Libraries needed to link C code with another linker: [] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 -MMD -MP /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 -MMD /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.c Rejected C compiler flag -MMD Trying C compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 -xMMD /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.c Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 -qmakedep=gcc /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.c Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 -MD /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -MD because no dependency file (/tmp/petsc-WwR5UX/config.setCompilers/conftest.d) was generated Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD -MP /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MMD /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to cl : Command line warning D9002 : ignoring unknown option '-MMD' conftest.cc Rejected Cxx compiler flag -MMD Trying Cxx compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -xMMD /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to cl : Command line warning D9002 : ignoring unknown option '-xMMD' conftest.cc Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -qmakedep=gcc /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to cl : Command line warning D9002 : ignoring unknown option '-qmakedep=gcc' conftest.cc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -MD /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: cl : Command line warning D9025 : overriding '/MT' with '/MD' conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected Cxx compiler flag -MD because no dependency file (/tmp/petsc-WwR5UX/config.setCompilers/conftest.d) was generated Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -MMD -MP /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -MMD /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/MMD' Successful compile: Source: program main end Rejecting compiler flag -MMD due to ifort: command line warning #10006: ignoring unknown option '/MMD' Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -xMMD /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xMMD' Successful compile: Source: program main end Rejecting compiler flag -xMMD due to ifort: command line warning #10006: ignoring unknown option '/xMMD' Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -qmakedep=gcc /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Successful compile: Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '/qmakedep=gcc' Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -MD /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10121: overriding '/MT' with '/MD' Successful compile: Source: program main end Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-WwR5UX/config.setCompilers/conftest.d) was generated Popping language FC ================================================================================ TEST checkRestrict from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2146: syntax error : missing ';' before identifier 'x' C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.cc(5) : error C2065: 'x' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -+ /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -+ due to nonzero status from link Rejecting compiler flag -+ due to cl : Command line warning D9002 : ignoring unknown option '-+' conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -x cxx -tlocal /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx Possible ERROR while running compiler: exit code 32512 stdout: Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxxSource: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -x cxx -tlocal due to nonzero status from link Rejecting compiler flag -x cxx -tlocal due to Error: win32fe: Input File Not Found: C:\cygwin\packages\PETSC-~1\cxx PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -Kc++ /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' Possible ERROR while running compiler: exit code 512 stdout: cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{'Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag -Kc++ due to nonzero status from link Rejecting compiler flag -Kc++ due to cl : Command line warning D9002 : ignoring unknown option '-Kc++' conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'class' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2146: syntax error : missing ';' before identifier 'somename' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2065: 'somename' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.c(5) : error C2143: syntax error : missing ';' before '{' PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag -TP Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -v -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.compilers/conftest.o stdout: cl : Command line warning D9002 : ignoring unknown option '-v' LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx compilers: Checking arg cl compilers: Unknown arg cl compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg Command compilers: Unknown arg Command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg D9002 compilers: Unknown arg D9002 compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg LINK compilers: Unknown arg LINK compilers: Checking arg : compilers: Unknown arg : compilers: Checking arg C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg found compilers: Unknown arg found compilers: Checking arg or compilers: Unknown arg or compilers: Checking arg not compilers: Unknown arg not compilers: Checking arg built compilers: Unknown arg built compilers: Checking arg by compilers: Unknown arg by compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg last compilers: Unknown arg last compilers: Checking arg incremental compilers: Unknown arg incremental compilers: Checking arg link; compilers: Unknown arg link; compilers: Checking arg performing compilers: Unknown arg performing compilers: Checking arg full compilers: Unknown arg full compilers: Checking arg link compilers: Unknown arg link compilers: Libraries needed to link Cxx code with another linker: [] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.o /tmp/petsc-WwR5UX/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type unchanged with code void d1chk(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.o /tmp/petsc-WwR5UX/config.compilers/confc.o stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: conftest.obj : error LNK2019: unresolved external symbol D1CHK referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC Testing Fortran mangling type caps with code void D1CHK(void){return;} Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void D1CHK(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.o /tmp/petsc-WwR5UX/config.compilers/confc.o Popping language FC compilers: Fortran name mangling is caps Defined "HAVE_FORTRAN_CAPS" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -MT -Z7 /tmp/petsc-WwR5UX/config.compilers/conftest.o /tmp/petsc-WwR5UX/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol D1_CHK referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -cpp /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -cpp due to nonzero status from link Rejecting compiler flag -cpp due to ifort: command line warning #10006: ignoring unknown option '/cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -xpp=cpp /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -xpp=cpp due to nonzero status from link Rejecting compiler flag -xpp=cpp due to ifort: command line warning #10006: ignoring unknown option '/xpp=cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -F /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line error: option '/F' is ambiguous Possible ERROR while running compiler: exit code 256 stdout: ifort: command line error: option '/F' is ambiguousSource: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -F due to nonzero status from link Rejecting compiler flag -F due to ifort: command line error: option '/F' is ambiguous PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -Cpp /tmp/petsc-WwR5UX/config.setCompilers/conftest.F stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1)Source: program main #define dummy dummy #ifndef dummy fooey #endif end Rejecting compiler flag -Cpp due to nonzero status from link Rejecting compiler flag -Cpp due to ifort: command line warning #10006: ignoring unknown option '/Cpp' C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(2): warning #5117: Bad # preprocessor line #define dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(4): warning #5117: Bad # preprocessor line #ifndef dummy -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => dummy ----------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(6): warning #5117: Bad # preprocessor line #endif -^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => fooey ------------^ C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F(5): error #6218: This statement is positioned incorrectly and/or has syntax errors. fooey ------------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.F (code 1) PETSc Error: No output file produced Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag -fpp Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp -DTesting /tmp/petsc-WwR5UX/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -V stdout: ifort: command line error: no files specified; for help type "ifort /help" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -v -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.o stdout: ifort: command line warning #10006: ignoring unknown option '/v' C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom -mP1OPT_version=13.1-intel64 -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mGLOB_microsoft_version=1600 "-mGLOB_options_string=-v -MT -Z7 -fpp -nologo -FeC:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 -mP3OPT_defaultlibs_omit=FALSE -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF -mP3OPT_defaultlibs_f90_port -mP1OPT_check_stack -mP3OPT_emit_line_numbers -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 -mDEBUG_no_pdb=TRUE -mP3OPT_inline_alloca -mGLOB_routine_pointer_size_64 -mGLOB_split_functions=0 -mIPOPT_activate -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d92 -mCG_bnl_movbe=T -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=0 -mP2OPT_offload_unique_var_string=8520198792 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=C:\cygwin\tmp\8520slis4 -mIPOPT_mo_global_data "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe" "-debug" "-pdb:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.pdb" "-subsystem:console" "-nologo" "C:\cygwin\tmp\conftest.obj"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_8520.obj -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=C:\cygwin\tmp\8520tempfile2 -mGLOB_os_target=GLOB_OS_TARGET_WINNT -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_8520.obj -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true C:\cygwin\tmp\conftest.obj -mIPOPT_object_files=T -mIPOPT_assembly_files=C:\cygwin\tmp\8520alis3 link -out:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe -debug -pdb:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.pdb -subsystem:console -nologo C:\cygwin\tmp\conftest.obj Popping language FC compilers: Checking arg ifort: compilers: Unknown arg ifort: compilers: Checking arg command compilers: Unknown arg command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg #10006: compilers: Unknown arg #10006: compilers: Checking arg ignoring compilers: Unknown arg ignoring compilers: Checking arg unknown compilers: Unknown arg unknown compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Unknown arg C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\fortcom compilers: Checking arg -mP1OPT_version=13.1-intel64 compilers: Unknown arg -mP1OPT_version=13.1-intel64 compilers: Checking arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Unknown arg -mGLOB_diag_file=C:\cygwin\tmp\conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mGLOB_microsoft_version=1600 compilers: Unknown arg -mGLOB_microsoft_version=1600 compilers: Checking arg "-mGLOB_options_string=-v compilers: Unknown arg "-mGLOB_options_string=-v compilers: Checking arg -MT compilers: Unknown arg -MT compilers: Checking arg -Z7 compilers: Unknown arg -Z7 compilers: Checking arg -fpp compilers: Unknown arg -fpp compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg -FeC:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -FeC:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Handling HPUX list of directories: \PROGRA~2\Intel\COMPOS~1\bin\intel64 compilers: Checking arg -mP3OPT_defaultlibs_omit=FALSE compilers: Unknown arg -mP3OPT_defaultlibs_omit=FALSE compilers: Checking arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Unknown arg -mP3OPT_defaultlibs=P3OPT_DEFAULTLIBS_STATIC_MULTITHREAD compilers: Checking arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Unknown arg -mP3OPT_defaultlibs_select=P3OPT_DEFAULTLIBS_SELECT_F90_IVF compilers: Checking arg -mP3OPT_defaultlibs_f90_port compilers: Unknown arg -mP3OPT_defaultlibs_f90_port compilers: Checking arg -mP1OPT_check_stack compilers: Unknown arg -mP1OPT_check_stack compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_CV10 compilers: Checking arg -mDEBUG_no_pdb=TRUE compilers: Unknown arg -mDEBUG_no_pdb=TRUE compilers: Checking arg -mP3OPT_inline_alloca compilers: Unknown arg -mP3OPT_inline_alloca compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_split_functions=0 compilers: Unknown arg -mGLOB_split_functions=0 compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d92 compilers: Unknown arg -mGLOB_product_id_code=0x22006d92 compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=0 compilers: Unknown arg -mGLOB_offload_mode=0 compilers: Checking arg -mP2OPT_offload_unique_var_string=8520198792 compilers: Unknown arg -mP2OPT_offload_unique_var_string=8520198792 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Unknown arg -mGLOB_imf_mapping_library=C:\PROGRA~2\Intel\COMPOS~1\bin\intel64\libiml_attr.dll compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=C:\cygwin\tmp\8520slis4 compilers: Unknown arg -mIPOPT_source_files_list=C:\cygwin\tmp\8520slis4 compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg "-mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe" compilers: Unknown arg -mIPOPT_cmdline_link="-out:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe compilers: Checking arg "-debug" compilers: Unknown arg -debug compilers: Checking arg "-pdb:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.pdb" compilers: Unknown arg -pdb:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg "-subsystem:console" compilers: Unknown arg -subsystem:console compilers: Checking arg "-nologo" compilers: Unknown arg -nologo compilers: Checking arg "C:\cygwin\tmp\conftest.obj"" compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_8520.obj compilers: Unknown arg -mIPOPT_obj_output_file_name=C:\cygwin\tmp\ipo_8520.obj compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\8520tempfile2 compilers: Unknown arg -mGLOB_driver_tempfile_name=C:\cygwin\tmp\8520tempfile2 compilers: Checking arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Unknown arg -mGLOB_os_target=GLOB_OS_TARGET_WINNT compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_MASM5 compilers: Checking arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Unknown arg -mP3OPT_obj_target=P3OPT_OBJ_TARGET_NTCOFF compilers: Checking arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_8520.obj compilers: Unknown arg -mGLOB_obj_output_file=C:\cygwin\tmp\ipo_8520.obj compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=C:\cygwin\tmp\8520alis3 compilers: Unknown arg -mIPOPT_assembly_files=C:\cygwin\tmp\8520alis3 compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg -out:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe compilers: Unknown arg -out:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe compilers: Checking arg -debug compilers: Unknown arg -debug compilers: Checking arg -pdb:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.pdb compilers: Unknown arg -pdb:C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.pdb compilers: Checking arg -subsystem:console compilers: Unknown arg -subsystem:console compilers: Checking arg -nologo compilers: Unknown arg -nologo compilers: Checking arg C:\cygwin\tmp\conftest.obj compilers: Unknown arg C:\cygwin\tmp\conftest.obj compilers: Libraries needed to link Fortran code with the C linker: ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.setCompilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.setCompilers/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.SET\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.setCompilers/conftest.exe Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void foo(void){D1CHK();} Popping language Cxx Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.compilers/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void D1CHK(void); void D1CHK(void){return;} Popping language Cxx Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.o /tmp/petsc-WwR5UX/config.compilers/cxxobj.o /tmp/petsc-WwR5UX/config.compilers/confc.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Cygwin detected: ignoring HAVE_F90_2PTR_ARG test ================================================================================ TEST checkFortranModuleInclude from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.compilers/conftest.exe -I/tmp/petsc-WwR5UX/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.o /tmp/petsc-WwR5UX/config.compilers/configtest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.COM\conftest.exe not found or not built by the last incremental link; performing full link compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -module /tmp/petsc-WwR5UX/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Possible ERROR while running compiler: exit code 32512 Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.compilers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -module:/tmp/petsc-WwR5UX/config.compilers/confdir -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/compilers.py:1367) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1367) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.headers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/config.setCompilers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 61 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.headers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.headers/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.o Executing: /tmp/petsc-WwR5UX/config.headers/conftest.exe Executing: /tmp/petsc-WwR5UX/config.headers/conftest.exe Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 5 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/stat.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" ================================================================================ TEST checkSysWait from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.headers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(5) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } ================================================================================ TEST checkTime from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 65 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.headers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sys/time.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } ================================================================================ TEST checkMath from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 69 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\math.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MATH_H" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.headers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(6) : error C2065: 'M_PI' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.headers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _USE_MATH_DEFINES 1 #include int main() { double pi = M_PI; if (pi); ; return 0; } Defined "_USE_MATH_DEFINES" to "1" Activated Windows math #defines, like M_PI ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/socket.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 77 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 81 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\malloc.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\time.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 85 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\Direct.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DIRECT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 89 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #pragma once #line 25 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\Ws2tcpip.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #pragma once #line 49 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 61 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\winsock2.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(push) #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(disable:4001) #line 24 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma once #line 181 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 194 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 195 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 199 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 207 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 208 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 216 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 217 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 224 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 226 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 228 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 230 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 232 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 235 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 236 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 245 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 249 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 253 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 257 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 261 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 265 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 267 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #pragma warning(pop) #line 274 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 275 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 277 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\sdkddkver.h" #line 22 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma once #line 29 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 100 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 104 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 108 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 112 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 116 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 122 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 127 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 128 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4116) #line 135 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 136 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 137 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4514) #pragma warning(disable:4103) #line 144 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(push) #line 147 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #pragma warning(disable:4001) #pragma warning(disable:4201) #pragma warning(disable:4214) #line 151 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\windows.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\excpt.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'ieeefp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'strings.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'cxxabi.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/systeminfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 93 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\dos.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_DOS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 97 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #pragma once #line 17 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 35 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 36 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 37 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 57 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 79 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 88 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 103 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" #line 145 "C:\\Program Files (x86)\\Microsoft SDKs\\Windows\\v7.0A\\include\\WindowsX.h" Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/sysinfo.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/wait.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 101 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdlib.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pthread.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 105 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\setjmp.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/utsname.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'machine/endian.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 109 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\limits.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 113 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\fcntl.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 117 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\string.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/times.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 121 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\io.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 125 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stdint.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\yvals.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'pwd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 129 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\float.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/param.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netdb.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 133 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\search.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'mathimf.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/procfs.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sys/resource.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 137 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'netinet/in.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.headers/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.headers -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.c(3) : fatal error C1083: Cannot open include file: 'unistd.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.c(4) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_SIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_SIZE C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_SIZE, using default 32768 Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_LINESIZE conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_LINESIZE C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_LINESIZE, using default 32 Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.c(5) : warning C4047: 'initializing' : 'FILE *' differs in levels of indirection from 'int' Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol pclose referenced in function getconf_LEVEL1_DCACHE_ASSOC conftest.obj : error LNK2019: unresolved external symbol popen referenced in function getconf_LEVEL1_DCACHE_ASSOC C:\cygwin\tmp\PE6120~1\PETSCU~1.CAC\conftest.exe : fatal error LNK1120: 2 unresolved externalsCould not determine LEVEL1_DCACHE_ASSOC, using default 2 Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-WwR5UX/config.functions Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Executing: /tmp/petsc-WwR5UX/config.functions/conftest.exe Executing: /tmp/petsc-WwR5UX/config.functions/conftest.exe ================================================================================ TEST checkSysinfo from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysinfo referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkVPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_VPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVFPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_VFPRINTF" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.functions\conftest.c(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST checkVSNPrintf from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE__VSNPRINTF" to "1" Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.setCompilers -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.functions/conftest.cc stdout: conftest.cc c:\cygwin\tmp\petsc-wwr5ux\config.functions\conftest.cc(8) : warning C4700: uninitialized local variable 'Argp' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; _vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Popping language Cxx ================================================================================ TEST checkNanosleep from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union type Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(6) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(7) : error C2224: left of '.tv_sec' must have struct/union type C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(8) : error C2224: left of '.tv_nsec' must have struct/union typeSource: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Compile failed inside link ================================================================================ TEST checkSignalHandlerType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.functions/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all types Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(6) : error C2120: 'void' illegal with all typesSource: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-wwr5ux\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol va_copy referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l2' used c:\cygwin\tmp\petsc-wwr5ux\config.functions\conftest.c(7) : warning C4700: uninitialized local variable 'l1' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; __va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol __va_copy referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals================================================================================ TEST checkClassify from config.functions(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 34 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 15 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [rand getdomainname _sleep snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [rand getdomainname _sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [rand] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_RAND" to "1" Checking for functions [getdomainname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getdomainname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE__SLEEP" to "1" Checking for functions [snprintf realpath dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); char realpath(); char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol snprintf referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [realpath] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol realpath referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlsym] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlsym referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [bzero _getcwd getwd uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [bzero _getcwd getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char _getcwd(); char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [bzero] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol bzero referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE__GETCWD" to "1" Checking for functions [getwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol getwd referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [uname _lseek sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); char _lseek(); char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [uname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol uname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE__LSEEK" to "1" Checking for functions [sleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 7 unresolved externalsChecking for functions [_access lseek usleep _intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [_access lseek usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); char lseek(); char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE__ACCESS" to "1" Checking for functions [lseek] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LSEEK" to "1" Checking for functions [usleep] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol usleep referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memset dlclose gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); char dlclose(); char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [_intel_fast_memset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) _intel_fast_memset_will_always_fail_with_ENOSYS(); #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memset referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlclose] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlclose referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gethostname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock get_nprocs access _snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [clock get_nprocs access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); char get_nprocs(); char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [clock] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_CLOCK" to "1" Checking for functions [get_nprocs] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol get_nprocs referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [access] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf dlerror mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); char dlerror(); char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [_snprintf] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE__SNPRINTF" to "1" Checking for functions [dlerror] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol dlerror referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [mkstemp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol mkstemp referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 19 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 11 unresolved externalsChecking for functions [fork getpagesize sbreak memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 5 unresolved externalsChecking for functions [fork getpagesize sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [fork] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol fork referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getpagesize] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getpagesize referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sbreak] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sbreak referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memalign sigset getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 2 unresolved externalsChecking for functions [memalign] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol memalign referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigset] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigset referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getcwd] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_GETCWD" to "1" Checking for functions [gethostbyname gettimeofday readlink PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 6 unresolved externalsChecking for functions [gethostbyname gettimeofday readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char gettimeofday(); char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [gethostbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gethostbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [gettimeofday] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol gettimeofday referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [readlink] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol readlink referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG sigaction strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); char sigaction(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [sigaction] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sigaction referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [strcasecmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol strcasecmp referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 8 unresolved externalsChecking for functions [dlopen drand48 socket memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [dlopen drand48 socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); char drand48(); char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [dlopen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol dlopen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [drand48] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol drand48 referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [socket] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol socket referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove signal popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); char signal(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [memmove] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_MEMMOVE" to "1" Checking for functions [signal] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_SIGNAL" to "1" Checking for functions [popen] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol popen referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 4 unresolved externalsChecking for functions [getrusage times _intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char times(); char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main conftest.obj : error LNK2019: unresolved external symbol times referenced in function main conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 3 unresolved externalsChecking for functions [getrusage] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol getrusage referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [times] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol times referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [_intel_fast_memcpy] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) _intel_fast_memcpy_will_always_fail_with_ENOSYS(); #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol _intel_fast_memcpy referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time sysctlbyname stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [time] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_TIME" to "1" Checking for functions [sysctlbyname] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol sysctlbyname referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [stricmp] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Defined "HAVE_STRICMP" to "1" ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'sigfpe.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'fpxcp.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 225 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 8 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 9 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 10 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'floatingpoint.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFeatureTestMacros from PETSc.utilities.featureTestMacros(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from PETSc.utilities.featureTestMacros(config/PETSc/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sysctl.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.FEA\conftest.c(4) : fatal error C1083: Cannot open include file: 'sched.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST check_siginfo_t from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-WwR5UX/config.types Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'siginfo_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found ================================================================================ TEST check__int64 from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'mode_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } Typedefed "int" to "mode_t" Checking for type: off_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'int32_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } Typedefed "int" to "int32_t" ================================================================================ TEST checkPID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'pid_t' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2146: syntax error : missing ';' before identifier 'a' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'a' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } Typedefed "int" to "pid_t" ================================================================================ TEST checkUID from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 233 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.TYP\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.types\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.TYP\\conftest.c" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #pragma once #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 29 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 31 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 32 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long __time32_t; #line 43 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __int64 __time64_t; #line 48 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef __time64_t time_t; #line 55 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 57 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned short _ino_t; typedef unsigned short ino_t; #line 67 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 70 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef unsigned int _dev_t; typedef unsigned int dev_t; #line 80 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 83 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" typedef long _off_t; typedef long off_t; #line 93 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 96 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 98 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sys/types.h" #line 4 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.TYP\\conftest.c" Defined "uid_t" to "int" Defined "gid_t" to "int" ================================================================================ TEST checkSignal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(3) : fatal error C1083: Cannot open include file: 'complex.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ================================================================================ TEST checkCxxComplex from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.functions -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/config.types/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.types/conftest.o Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.setCompilers -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:150) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:150) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.types/conftest.F stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.F(3): warning #7319: This argument's data type is incompatible with this intrinsic procedure; procedure assumed EXTERNAL. [DREAL] d = dreal(3.0) ----------------^ Successful compile: Source: program main double precision d d = dreal(3.0) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 24576 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol DREAL referenced in function MAIN__ C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe : fatal error LNK1120: 1 unresolved externals Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:158) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:158) Checks for working const, and if not found defines it to empty string Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.types\conftest.c(25) : warning C4700: uninitialized local variable 'x' used c:\cygwin\tmp\petsc-wwr5ux\config.types\conftest.c(30) : warning C4700: uninitialized local variable 't' used c:\cygwin\tmp\petsc-wwr5ux\config.types\conftest.c(46) : warning C4700: uninitialized local variable 'b' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:214) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:214) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'bogus' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'endian' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2065: 'endian' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(11) : error C2146: syntax error : missing ';' before identifier 'macros' C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.c(13) : error C2065: 'macros' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { /* Are we little or big endian? From Harbison&Steele. */ union { long l; char c[sizeof(long)]; } u; u.l = 1; exit(u.c[sizeof(long) - 1] == 1); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:318) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:318) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/types.py:364) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:364) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-WwR5UX/config.libraries Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -lsocket -lnsl stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libsocket.lib' Popping language C ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -lfpe stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libfpe.lib' Popping language C ================================================================================ TEST checkMath from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:250) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:250) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:266) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:266) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol erf referenced in function _check_erf C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: erf() not found ================================================================================ TEST checkMathTgamma from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:275) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:275) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol tgamma referenced in function _check_tgamma C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Warning: tgamma() not found ================================================================================ TEST checkMathFenv from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:284) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:284) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directory Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(4) : fatal error C1083: Cannot open include file: 'fenv.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Compile failed inside link Popping language C Warning: with FE_DFL_ENV not found ================================================================================ TEST checkCompression from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:292) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:292) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol compress referenced in function _check_compress conftest.obj : error LNK2019: unresolved external symbol uncompress referenced in function _check_uncompress C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -lz stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libz.lib' Popping language C Checking for functions [compress uncompress] in library ['zlib.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o zlib.lib stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'zlib.lib' Popping language C Warning: No compression library found ================================================================================ TEST checkRealtime from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:313) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:313) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2079: 'tp' uses undefined struct 'timespec' C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(5) : error C2065: 'CLOCK_REALTIME' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:329) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:329) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -ldl stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Possible ERROR while running linker: exit code 512 stdout: LINK : fatal error LNK1104: cannot open file 'libdl.lib' Popping language C Checking for header: dlfcn.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directory Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 301 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 12 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 13 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 3 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" C:\cygwin\tmp\PE6120~1\CONFIG~1.HEA\conftest.c(3) : fatal error C1083: Cannot open include file: 'dlfcn.h': No such file or directorySource: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureTimers from PETSc.utilities.timer(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for functions [MPI_CRAY_barrier] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); static void _check_MPI_CRAY_barrier() { MPI_CRAY_barrier(); } int main() { _check_MPI_CRAY_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_CRAY_barrier referenced in function _check_MPI_CRAY_barrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:39) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:39) Checks for limits All intermediate test results are stored in /tmp/petsc-WwR5UX/PETSc.utilities.missing Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:49) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:49) Checks if u_short is undefined Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'u_short' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2146: syntax error : missing ';' before identifier 'foo' C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'foo' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } Defined "NEEDS_UTYPE_TYPEDEFS" to "1" ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:55) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:55) Checks for SOCKETS Checking for functions [socket] in library ['Ws2_32.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_socket() { socket(0,0,0);; } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o Ws2_32.lib Defined "HAVE_LIBWS2_32" to "1" Popping language C Adding ['Ws2_32.lib'] to LIBS Defined "HAVE_WINSOCK2_H" to "1" Defined "HAVE_SOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { closesocket(0); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o Ws2_32.lib Defined "HAVE_CLOSESOCKET" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { WSAGetLastError(); return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_WSAGETLASTERROR" to "1" ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:75) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:75) Check for missing signals, and define MISSING_ if necessary Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGALRM' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Defined "MISSING_SIGALRM" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGBUS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Defined "MISSING_SIGBUS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCHLD' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Defined "MISSING_SIGCHLD" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGCONT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Defined "MISSING_SIGCONT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGHUP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Defined "MISSING_SIGHUP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGKILL' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Defined "MISSING_SIGKILL" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGPIPE' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Defined "MISSING_SIGPIPE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGQUIT' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Defined "MISSING_SIGQUIT" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSTOP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Defined "MISSING_SIGSTOP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGSYS' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Defined "MISSING_SIGSYS" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTRAP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Defined "MISSING_SIGTRAP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGTSTP' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Defined "MISSING_SIGTSTP" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGURG' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Defined "MISSING_SIGURG" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR1' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Defined "MISSING_SIGUSR1" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(6) : error C2065: 'SIGUSR2' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } Defined "MISSING_SIGUSR2" to "1" ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:92) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:92) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,size_t)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : error C2065: 'getdomainname' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(14) : warning C4047: 'initializing' : 'int (__cdecl *)(char *,int)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Added prototype #include int getdomainname(char *, size_t); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(14) : error C2065: 'getdomainname' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Added prototype #include int getdomainname(char *, size_t); to language extern C Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:117) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:117) Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(11) : warning C4047: 'initializing' : 'double (__cdecl *)(void)' differs in levels of indirection from 'int' C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(12) : error C2065: 'srand48' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.c(12) : warning C4047: 'initializing' : 'void (__cdecl *)(long)' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Added prototype double drand48(void); to language C Added prototype void srand48(long int); to language C Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -MT -GR -EHsc -Z7 -Zm200 -TP /tmp/petsc-WwR5UX/PETSc.utilities.missing/conftest.cc stdout: conftest.cc C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifier Possible ERROR while running compiler: exit code 512 stdout: conftest.cc C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(11) : error C2065: 'drand48' : undeclared identifier C:\cygwin\tmp\PE6120~1\PETSCU~1.MIS\conftest.cc(12) : error C2065: 'srand48' : undeclared identifierSource: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Compile failed inside link Added prototype double drand48(void); to language extern C Added prototype void srand48(long int); to language extern C Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/missing.py:141) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:141) ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.libraries/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [GET_COMMAND_ARGUMENT] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GET_COMMAND_ARGUMENT(); static void _check_GET_COMMAND_ARGUMENT() { GET_COMMAND_ARGUMENT(); } int main() { _check_GET_COMMAND_ARGUMENT();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol GET_COMMAND_ARGUMENT referenced in function _check_GET_COMMAND_ARGUMENT C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [GETARG] in library [''] ['-L/cygdrive/c/cygwin/packages/petsc-dev/\\PROGRA~2\\Intel\\COMPOS~1\\bin\\intel64'] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char GETARG(); static void _check_GETARG() { GETARG(); } int main() { _check_GETARG();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 Ws2_32.lib stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol GETARG referenced in function _check_GETARG C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [ipxfargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol ipxfargc_ referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [f90_unix_MP_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol f90_unix_MP_iargc referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [PXFGETARG] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol PXFGETARG referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [iargc_] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol iargc_ referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externalsChecking for functions [GETARG at 16] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(13) : error C2018: unknown character '0x40' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(13) : error C2143: syntax error : missing '{' before 'constant' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(13) : error C2059: syntax error : '' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(21) : error C2004: expected 'defined(id)' C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.c(21) : fatal error C1012: unmatched parenthesis : missing ')'Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG at 16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) GETARG at 16_will_always_fail_with_ENOSYS(); #else GETARG at 16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.functions/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.functions/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.functions/conftest.o Ws2_32.lib -L/cygdrive/c/cygwin/packages/petsc-dev/\PROGRA~2\Intel\COMPOS~1\bin\intel64 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: Warning: win32fe: Library Path Not Found: /cygdrive/c/cygwin/packages/petsc-dev/PROGRA~2IntelCOMPOS~1binintel64 conftest.obj : error LNK2019: unresolved external symbol _gfortran_iargc referenced in function main C:\cygwin\tmp\PE6120~1\CONFIG~1.FUN\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST configureMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:61) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:61) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/bin/intel64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/BIN/amd64/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/VC/VCPackages/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/NETFX 4.0 Tools/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mkl/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Advisor XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/VTune Amplifier XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Inspector XE 2013/bin32/gmake...not found Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32/compiler/gmake...not found Checking for program /cygdrive/c/Windows/system32/gmake...not found Checking for program /cygdrive/c/Windows/gmake...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gmake...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gmake...not found Checking for program /cygdrive/c/Program Files/TEC100/BIN/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/CMake 2.8/bin/gmake...not found Checking for program /cygdrive/c/Program Files/doxygen/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Graphviz 2.28/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/USGS/phast-2.4.1-7430/bin/gmake...not found Checking for program /cygdrive/c/MinGW/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HDF_Group/HDF5/1.8.11/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 10.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/VisualSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Composer XE 2013/redist/intel64/mpirt/gmake...not found Checking for program /home/dsu/gmake...not found Checking for program /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:79) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:79) Check for GNU make Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: $xqB [^_] [^_] 3S$3C [^_] ,[^_] <-tL<@t<<+uI ,[^_] ue;} <@u. [^_] [^] r.v(1 [^_] [^_] L[^_] [^_] [^_] [^_] t+;5 [^_] [^_] <[^_] $/*B $L*B <[^_] [^_] [^_] $T+B $T+B $T+B $4+B ,[^_] [^_] ,[^_] $l,B S$;V$ [^_] $4,B $l-B $H-B [^_] <[^_] ,[^_] <[^_] $T.B $G.B $`/B $e0B $z0B $|1B $(/B @[^] $P0B $80B $`1B $<1B <[^_] 2[^_] 2^_] 2^_] 2[^_] 2^_] 2^_] ,[^_] ;] [^_] [^_] t6;} [^_] \[^_] [^_] $,7B $h6B $@6B $@6B WVSP $\7B [^_] $08B $T8B $|8B $U9B [^] $h9B [^_] [^_] <\t__B 8.t. $m`B $V`B $+5P $(`B [^_] [^_] $$aB $HaB $5^B [^_] L[^_ $2aB L[^_] $5^B WVSP [^_] [^_] [^_] BN at t [^] [^_] ;-tc $4bB $,bB $DbB S$tL @N at u [^_] [^_] $$cB $tcB [^_] $CgB $DcB $lB ,[^_] $RlB t.<$u $ZlB ,[^_] [^_] [^_] [^_] [^_] t.;5 WVS1 8.t( [^_] [^_] tj=t ,[^_] ,[^_] $(){}$`^~! cyggcc_s-1.dll __register_frame_info cyggcj-11.dll _Jv_RegisterClasses __deregister_frame_info attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES Recipe has too many lines (%ud) $(MAKE) ${MAKE} kill # recipe to execute (built-in): (from `%s', line %lu): %c%.*s .SUFFIXES SUFFIXES ARFLAGS OBJC CHECKOUT,v +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi WEAVE weave CWEAVE cweave TANGLE tangle CTANGLE ctangle rm -f LINK.o $(CC) $(LDFLAGS) $(TARGET_ARCH) COMPILE.c $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t YACC.m LEX.m COMPILE.f $(FC) $(FFLAGS) $(TARGET_ARCH) -c LINK.f $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.F $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c LINK.r $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.def $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) COMPILE.mod $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) COMPILE.p $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.p $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.s $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.s $(AS) $(ASFLAGS) $(TARGET_MACH) LINK.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F PREPROCESS.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F LINT.c $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< SCCS/s.% $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ .cpp $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.m) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ .mod $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o $(COMPILE.c) $(OUTPUT_OPTION) $< .cc.o $(COMPILE.cc) $(OUTPUT_OPTION) $< .C.o $(COMPILE.C) $(OUTPUT_OPTION) $< .cpp.o $(COMPILE.cpp) $(OUTPUT_OPTION) $< .f.o $(COMPILE.f) $(OUTPUT_OPTION) $< .m.o $(COMPILE.m) $(OUTPUT_OPTION) $< .p.o $(COMPILE.p) $(OUTPUT_OPTION) $< .F.o $(COMPILE.F) $(OUTPUT_OPTION) $< .r.o $(COMPILE.r) $(OUTPUT_OPTION) $< .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c .l.ln @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c .y.c $(YACC.y) $< mv -f y.tab.c $@ .l.c @$(RM) $@ $(LEX.l) $< > $@ .ym.m $(YACC.m) $< mv -f y.tab.c $@ .lm.m @$(RM) $@ $(LEX.m) $< > $@ .F.f $(PREPROCESS.F) $(OUTPUT_OPTION) $< .r.f $(PREPROCESS.r) $(OUTPUT_OPTION) $< .l.r $(LEX.l) $< > $@ mv -f lex.yy.r $@ .S.s $(PREPROCESS.S) $< > $@ .texinfo.info $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' name %s: Field '%s' not cached: %s hname vpath stem *name != '\0' /netrel/src/make-3.82.90-1/file.c strcache_iscached (name) Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... unlink: .SUFFIXES .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time %s: Timestamp out of range; substituting %s | %s .RECIPEPREFIX = # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. question_flag # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Files # files hash-table stats: print_file enter_file lookup_file undefined recursive simple Internal error: func_error: '%s' insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' warning: undefined variable `%.*s' default environment file environment override command line override automatic suffix basename addprefix filter %s: '%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s unterminated call to function `%s': missing `%c' abspath addsuffix notdir subst filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). *** (core dumped) (ignored) %s:%lu %s: recipe for target `%s' failed %s[%s] Error %d%s %s[%s] %s%s%s bash rksh dash ap <= end /netrel/src/make-3.82.90-1/job.c %s (line %d) Bad shell context (!unixy && !batch_mode_shell) %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) vfork cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) (remote) Putting child %p (%s) PID %s%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. %s: target `%s' does not exist %s: update target `%s' due to: %s construct_command_argv_internal break case continue eval exec exit export login logout read readonly shift switch test times trap ulimit umask unset while start_waiting_job %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to /tmp /usr/share/locale make getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine oneshell archives jobserver check-symlink .FEATURES SHELL MAKE_RESTARTS unknown debug level specification `%s' MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u BOGUS_UPDATE_STATUS /netrel/src/make-3.82.90-1/main.c unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. main always-make directory basic debug environment-overrides file help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch trace version print-directory no-print-directory what-if warn-undefined-variables eval quiet stop new-file assume-new assume-old max-load dry-run recon makefile Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. --trace Print tracing information. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. %s: %s[%u]: %s:%lu: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s %s: %s virtual memory exhausted write error: %s write error ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional warning: NUL character seen; rest of line ignored export override private define undefine prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SHELLFLAGS .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' $(HOME) HOME .INCLUDE_DIRS virtual memory exhausted empty variable name extraneous text after `define' directive missing `endef', unterminated `define' endef extraneous text after `endef' directive v != NULL /netrel/src/make-3.82.90-1/read.c invalid syntax in conditional unexport vpath include -include sinclude %s: %s recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s *p2 != '\0' v != 0 Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no `%%' .DEFAULT_GOAL missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /usr/include /usr/gnu/include /usr/local/include eval record_target_var GNUmakefile makefile Makefile stat: lstat: readlink: %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s %.2g Warning: File `%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 /netrel/src/make-3.82.90-1/remake.c Using default commands for `%s'. Nothing to be done for `%s'. `%s' is up to date. /lib /usr/lib update_file_1 _(knN r->suffixes[0] != NULL /netrel/src/make-3.82.90-1/rule.c r->suffixes[i] != NULL (%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u create_pattern_rule install_pattern_rule %s No strcache buffers total_buffers == numbuffs + 1 /netrel/src/make-3.82.90-1/strcache.c %s strcache buffers: %lu (%lu) / strings = %lu / storage = %lu B / avg = %lu B %s current buf: size = %hu B / used = %hu B / count = %hu / avg = %hu B %s other used: total = %lu B / count = %lu / avg = %lu B %s other free: total = %lu B / max = %lu B / min = %lu B / avg = %hu B %s strcache performance: lookups = %lu / hit rate = %lu%% # hash-table stats: strcache_print_stats automatic default environment makefile environment under -e command line `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) .RECIPEPREFIX .VARIABLES current_variable_set_list->next != NULL /netrel/src/make-3.82.90-1/variable.c MAKELEVEL %s%s%s MAKE_VERSION SHELL MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) %s=%u empty variable name # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # %u pattern-specific variable values # No pattern-specific variable values. pop_variable_scope 3.82.90 i686-pc-cygwin $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% BPOSIXLY_CORRECT alnum alpha blank cntrl digit graph lower print punct space upper xdigit next != NULL /netrel/src/make-3.82.90-1/glob/glob.c HOME glob GetModuleHandleA GetProcAddress __assert_func __ctype_ptr__ __errno __getreent __main _dll_crt0 at 0 _exit _fcntl64 _fdopen64 _fopen64 _fstat64 _impure_ptr _lseek64 _lstat64 _open64 _stat64 abort alarm atexit atof atoi atol calloc chdir clock_gettime close closedir ctime cygwin_detach_dll cygwin_internal dll_dllcrt0 dup2 execvp exit fclose fflush fgets fileno fork fprintf fputs fread free fwrite getcwd getenv getlogin getpid getpwnam getrlimit kill localtime malloc memcpy memmove memset mkstemp opendir pipe printf putc putenv puts qsort read readdir readlink realloc realpath remove setlocale setrlimit setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf strchr strcmp strcpy strdup strerror strlen strncmp strncpy strndup strpbrk strrchr strsignal strstr time tolower unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-8.dll Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 12 cores: using make_np = 10 Defined make macro "MAKE_NP" to "10" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:744) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:744) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified MPI libraries: ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] Contents: ['Bin', 'Inc', 'Lib', 'License', 'support.txt'] ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Checking for headers User specified MPI libraries: ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Checking include with compiler flags var CPPFLAGS ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.headers -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 397 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; #line 218 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef struct PreAttribute SA_Pre; typedef struct PreAttribute PreAttribute; typedef struct PostAttribute SA_Post; typedef struct PostAttribute PostAttribute; typedef struct FormatStringAttribute SA_FormatString; typedef struct InvalidCheckAttribute SA_InvalidCheck; typedef struct SuccessAttribute SA_Success; typedef struct PreBoundAttribute SA_PreBound; typedef struct PostBoundAttribute SA_PostBound; typedef struct PreRangeAttribute SA_PreRange; typedef struct PostRangeAttribute SA_PostRange; #line 282 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 284 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 305 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 308 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 161 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 162 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" Found header files ['mpi.h'] in ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/petsc-WwR5UX/config.packages.MPI Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:182) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:182) Check for functions added to the interface in MPI-2 Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_FINALIZED" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link ================================================================================ TEST configureTypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.types/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.types/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.types/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.types/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.TYP\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Executing: /tmp/petsc-WwR5UX/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe Executing: /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe Executing: /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe Defined "HAVE_MPI_INT64_T" to "1" Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe Executing: /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:320) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:320) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:630) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:630) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_SGI_barrier referenced in function _check_MPI_SGI_barrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_SGI_barrier referenced in function _check_MPI_SGI_barrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:640) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:640) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -GR -EHsc -Z7 -Zm200 -TP -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.libraries/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language Cxx Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.libraries -MT -GR -EHsc -Z7 -Zm200 -TP -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.libraries/conftest.cc stdout: conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -GR -EHsc -Z7 -Zm200 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:658) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:658) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -Z7 -fpp -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for functions [] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -Z7 -fpp -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.libraries/conftest.F Successful compile: Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -Z7 -fpp /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language FC Checking for mpi.mod Checking for functions [] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language FC Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe ifort -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.libraries -MT -Z7 -fpp -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.libraries/conftest.F stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.F(2): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [MPI] use mpi -----------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.F (code 1) Possible ERROR while running compiler: exit code 256 stdout: C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.F(2): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [MPI] use mpi -----------^ compilation aborted for C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.F (code 1)Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Compile failed inside link Popping language FC Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:683) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:683) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'buf' used c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'fh' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'buf' used c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'fh' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'info' used c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'disp' used c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(9) : warning C4700: uninitialized local variable 'fh' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c c:\cygwin\tmp\petsc-wwr5ux\config.packages.mpi\conftest.c(8) : warning C4700: uninitialized local variable 'info' used Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.MPI\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:720) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:720) Find MPI include paths from "mpicc -show" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -show stdout: cl : Command line warning D9002 : ignoring unknown option '-show' cl : Command line error D8003 : missing source filename Checking for functions [MPI_Alltoallw] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Checking for functions [MPI_Type_create_indexed_block] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Checking for functions [MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 2 unresolved externals Popping language C Checking for functions [MPI_Init_thread MPI_Iallreduce] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Init_thread] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } int main() { _check_MPI_Init_thread();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Checking for functions [MPI_Iallreduce] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } int main() { _check_MPI_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPI_Iallreduce referenced in function _check_MPI_Iallreduce C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Ibarrier MPI_Finalized MPI_Exscan] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Ibarrier] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } int main() { _check_MPI_Ibarrier();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPI_Ibarrier referenced in function _check_MPI_Ibarrier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPI_Finalized] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } int main() { _check_MPI_Finalized();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Checking for functions [MPI_Exscan] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE_LIBMSMPIFEC" to "1" Defined "HAVE_LIBMSMPI" to "1" Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Checking for functions [MPIX_Iallreduce] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPIX_Iallreduce referenced in function _check_MPIX_Iallreduce C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: LINK : C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe not found or not built by the last incremental link; performing full link conftest.obj : error LNK2019: unresolved external symbol MPIX_Iallreduce referenced in function _check_MPIX_Iallreduce C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_set referenced in function _check_MPIDI_CH3I_sock_set C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_set referenced in function _check_MPIDI_CH3I_sock_set C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library ['/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib', '/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib'] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpifec.lib /cygdrive/c/MSHPC/MicrosoftHPCPack2012/Lib/amd64/msmpi.lib Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_fixed_nbc_progress referenced in function _check_MPIDI_CH3I_sock_fixed_nbc_progress C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol MPIDI_CH3I_sock_fixed_nbc_progress referenced in function _check_MPIDI_CH3I_sock_fixed_nbc_progress C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:132) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:132) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/packages/MPI.py:145) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:145) Checking for mpiexec Pushing language C Popping language C Checking for program /cygdrive/c/MSHPC/MicrosoftHPCPack2012/bin/mpiexec...found Defined make macro "MPIEXEC" to "/cygdrive/c/MSHPC/MicrosoftHPCPack2012/bin/mpiexec" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-WwR5UX/config.packages.MPI/libconftest.lib /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o ; /usr/bin/true /tmp/petsc-WwR5UX/config.packages.MPI/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 -I/cygdrive/c/MSHPC/MicrosoftHPCPack2012/Inc /tmp/petsc-WwR5UX/config.packages.MPI/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe lib -a /tmp/petsc-WwR5UX/config.packages.MPI/libconftest.lib /tmp/petsc-WwR5UX/config.packages.MPI/conftest.o ; /usr/bin/true /tmp/petsc-WwR5UX/config.packages.MPI/libconftest.lib Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(19) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(19) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int' C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(33) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(33) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int' Possible ERROR while running compiler: exit code 512 stdout: conftest.c C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(19) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(19) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int' C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(33) : error C2065: 'RTLD_LAZY' : undeclared identifier C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.c(33) : warning C4047: '=' : 'void *' differs in levels of indirection from 'int'Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-WwR5UX/config.libraries/lib1.lib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-WwR5UX/config.libraries/lib2.lib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Compile failed inside link Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/scalarTypes.py:38) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:38) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol isnormal referenced in function main C:\cygwin\tmp\PE6120~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol isnormal referenced in function main C:\cygwin\tmp\PE6120~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol isnan referenced in function main C:\cygwin\tmp\PE6120~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol isnan referenced in function main C:\cygwin\tmp\PE6120~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol isinf referenced in function main C:\cygwin\tmp\PE6120~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol isinf referenced in function main C:\cygwin\tmp\PE6120~1\PETSCU~1.SCA\conftest.exe : fatal error LNK1120: 1 unresolved externalsExecuting: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib Defined "HAVE__ISNAN" to "1" Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/config.libraries -I/tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes/conftest.o Ws2_32.lib stdout: LINK : C:\cygwin\tmp\PE6120~1\PETSCU~1.SCA\conftest.exe not found or not built by the last incremental link; performing full link Defined "HAVE__FINITE" to "1" Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/scalarTypes.py:78) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:78) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol bgl_perfctr_void referenced in function _check_bgl_perfctr_void C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol bgl_perfctr_void referenced in function _check_bgl_perfctr_void C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -c -o /tmp/petsc-WwR5UX/config.libraries/conftest.o -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.compilers -I/tmp/petsc-WwR5UX/config.headers -I/tmp/petsc-WwR5UX/PETSc.utilities.cacheDetails -I/tmp/petsc-WwR5UX/PETSc.utilities.featureTestMacros -I/tmp/petsc-WwR5UX/PETSc.utilities.missing -I/tmp/petsc-WwR5UX/config.functions -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.packages.MPI -I/tmp/petsc-WwR5UX/PETSc.utilities.scalarTypes -I/tmp/petsc-WwR5UX/config.libraries -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.c stdout: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -o /tmp/petsc-WwR5UX/config.libraries/conftest.exe -MT -wd4996 -Z7 /tmp/petsc-WwR5UX/config.libraries/conftest.o Ws2_32.lib stdout: conftest.obj : error LNK2019: unresolved external symbol ADIOI_BGL_Open referenced in function _check_ADIOI_BGL_Open C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Possible ERROR while running linker: exit code 512 stdout: conftest.obj : error LNK2019: unresolved external symbol ADIOI_BGL_Open referenced in function _check_ADIOI_BGL_Open C:\cygwin\tmp\PE6120~1\CONFIG~1.LIB\conftest.exe : fatal error LNK1120: 1 unresolved externals Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/utilities/libraryOptions.py:92) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:92) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.yaml(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:537) TESTING: alternateConfigureLibrary from PETSc.packages.yaml(config/BuildSystem/config/package.py:537) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.valgrind(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py:479) TESTING: configureLibrary from PETSc.packages.valgrind(config/BuildSystem/config/package.py:479) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: [] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: [] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.headers /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 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"c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.headers -I/usr/local/include /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 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"c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: /cygdrive/c/cygwin/packages/petsc-dev/bin/win32fe/win32fe cl -E -I/tmp/petsc-WwR5UX/config.setCompilers -I/tmp/petsc-WwR5UX/config.types -I/tmp/petsc-WwR5UX/config.headers -I/usr/local/include /tmp/petsc-WwR5UX/config.headers/conftest.c stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Possible ERROR while running preprocessor: exit code 512 stdout: conftest.c #line 1 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 7 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 11 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 19 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 23 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 27 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 31 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 35 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 39 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 43 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 47 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 51 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 55 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 59 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 63 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 67 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 71 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 75 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 79 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 83 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 87 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 91 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 95 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 99 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 103 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 107 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 111 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 115 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 119 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 123 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 127 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 131 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 135 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 139 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 143 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 147 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 151 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 155 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 159 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 163 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 167 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 171 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 175 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 179 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 183 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 187 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 191 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 195 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 199 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 203 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 207 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 211 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 215 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 219 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 223 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 227 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 231 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 235 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 239 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 243 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 247 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 251 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 255 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 259 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 263 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 267 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 271 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 275 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 279 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 283 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 287 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 291 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 295 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 299 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 303 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 307 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 311 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 315 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 319 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 323 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 327 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 331 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 335 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 339 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 343 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 347 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 351 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 355 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 359 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 363 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 367 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 371 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 375 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 379 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 383 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 387 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 391 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 395 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 399 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 403 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 407 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 411 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 415 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 419 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 423 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 427 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 431 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 435 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 439 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 443 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 447 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 451 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 455 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 459 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 463 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 467 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 471 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 475 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 479 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 483 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 487 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 491 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 495 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 499 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 503 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 507 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 511 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 515 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 519 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 523 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 527 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 531 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 533 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\confdefs.h" #line 2 "C:\\cygwin\\tmp\\PE6120~1\\CONFIG~1.HEA\\conftest.c" #line 1 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" typedef int int32_t; typedef int mode_t; typedef int pid_t; #line 15 "c:\\cygwin\\tmp\\petsc-wwr5ux\\config.headers\\conffix.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\stddef.h" #pragma once #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 22 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 23 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 42 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 46 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\crtdefs.h" #line 1 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #pragma once #line 145 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 148 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 154 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 158 "C:\\Program Files (x86)\\Microsoft Visual Studio 10.0\\VC\\INCLUDE\\sal.h" #line 1 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #pragma once #line 21 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 23 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 24 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned __int64 size_t; #line 31 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 33 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" typedef unsigned short wchar_t; #line 38 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" #line 50 "c:\\program files (x86)\\microsoft visual studio 10.0\\vc\\include\\codeanalysis\\sourceannotations.h" enum SA_YesNoMaybe { SA_No = 0x0fff0001, SA_Maybe = 0x0fff0010, SA_Yes = 0x0fff0100 }; typedef enum SA_YesNoMaybe SA_YesNoMaybe; enum SA_AccessType { SA_NoAccess = 0, SA_Read = 1, SA_Write = 2, SA_ReadWrite = 3 }; typedef enum SA_AccessType SA_AccessType; [source_annotation_attribute( SA_Parameter )] struct PreAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostAttribute { unsigned int Deref; SA_YesNoMaybe Valid; SA_YesNoMaybe Null; SA_YesNoMaybe Tainted; SA_AccessType Access; size_t ValidElementsConst; size_t ValidBytesConst; const wchar_t* ValidElements; const wchar_t* ValidBytes; const wchar_t* ValidElementsLength; const wchar_t* ValidBytesLength; size_t WritableElementsConst; size_t WritableBytesConst; const wchar_t* WritableElements; const wchar_t* WritableBytes; const wchar_t* WritableElementsLength; const wchar_t* WritableBytesLength; size_t ElementSizeConst; const wchar_t* ElementSize; SA_YesNoMaybe NullTerminated; SA_YesNoMaybe MustCheck; const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct FormatStringAttribute { const wchar_t* Style; const wchar_t* UnformattedAlternative; }; [source_annotation_attribute( SA_ReturnValue )] struct InvalidCheckAttribute { long Value; }; [source_annotation_attribute( SA_Method )] struct SuccessAttribute { const wchar_t* Condition; }; [source_annotation_attribute( SA_Parameter )] struct PreBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostBoundAttribute { unsigned int Deref; }; [source_annotation_attribute( SA_Parameter )] struct PreRangeAttribute { unsigned int Deref; const char* MinVal; const char* MaxVal; }; [source_annotation_attribute( SA_Parameter|SA_ReturnValue )] struct PostRangeAttribute { unsigned int Deref; Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Directory does not exist: /opt/local (while checking "Package specific search directory VALGRIND" for "[]") Directory does not exist: /opt/local (while checking "Package specific search directory VALGRIND" for "[]") Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Executing: uname -s stdout: CYGWIN_NT-6.1-WOW64 Popping language C **** Configure header /tmp/petsc-WwR5UX/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef _USE_MATH_DEFINES #define _USE_MATH_DEFINES 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_IO_H #define PETSC_HAVE_IO_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_DIRECT_H #define PETSC_HAVE_DIRECT_H 1 #endif #ifndef PETSC_HAVE_WINDOWSX_H #define PETSC_HAVE_WINDOWSX_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_DOS_H #define PETSC_HAVE_DOS_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_WS2TCPIP_H #define PETSC_HAVE_WS2TCPIP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_FORTRAN_CAPS #define PETSC_HAVE_FORTRAN_CAPS 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static __inline #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBWS2_32 #define PETSC_HAVE_LIBWS2_32 1 #endif #ifndef PETSC_HAVE_LIBMSMPIFEC #define PETSC_HAVE_LIBMSMPIFEC 1 #endif #ifndef PETSC_HAVE_LIBMSMPI #define PETSC_HAVE_LIBMSMPI 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-mswin-c-debug" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE___INT64 #define PETSC_HAVE___INT64 1 #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 4 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_uid_t #define PETSC_uid_t int #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_gid_t #define PETSC_gid_t int #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE__LSEEK #define PETSC_HAVE__LSEEK 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE__GETCWD #define PETSC_HAVE__GETCWD 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE__SLEEP #define PETSC_HAVE__SLEEP 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE__VSNPRINTF #define PETSC_HAVE__VSNPRINTF 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_STRICMP #define PETSC_HAVE_STRICMP 1 #endif #ifndef PETSC_HAVE__SNPRINTF #define PETSC_HAVE__SNPRINTF 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE__ACCESS #define PETSC_HAVE__ACCESS 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_INT64_T #define PETSC_HAVE_MPI_INT64_T 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE__ISNAN #define PETSC_HAVE__ISNAN 1 #endif #ifndef PETSC_HAVE__FINITE #define PETSC_HAVE__FINITE 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_MISSING_SIGUSR2 #define PETSC_MISSING_SIGUSR2 1 #endif #ifndef PETSC_MISSING_SIGURG #define PETSC_MISSING_SIGURG 1 #endif #ifndef PETSC_MISSING_SIGPIPE #define PETSC_MISSING_SIGPIPE 1 #endif #ifndef PETSC_MISSING_SIGHUP #define PETSC_MISSING_SIGHUP 1 #endif #ifndef PETSC_MISSING_SIGSTOP #define PETSC_MISSING_SIGSTOP 1 #endif #ifndef PETSC_MISSING_SIGSYS #define PETSC_MISSING_SIGSYS 1 #endif #ifndef PETSC_MISSING_SIGCONT #define PETSC_MISSING_SIGCONT 1 #endif #ifndef PETSC_HAVE_WSAGETLASTERROR #define PETSC_HAVE_WSAGETLASTERROR 1 #endif #ifndef PETSC_HAVE_CLOSESOCKET #define PETSC_HAVE_CLOSESOCKET 1 #endif #ifndef PETSC_MISSING_SIGTSTP #define PETSC_MISSING_SIGTSTP 1 #endif #ifndef PETSC_MISSING_SIGCHLD #define PETSC_MISSING_SIGCHLD 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_MISSING_SIGUSR1 #define PETSC_MISSING_SIGUSR1 1 #endif #ifndef PETSC_MISSING_SIGTRAP #define PETSC_MISSING_SIGTRAP 1 #endif #ifndef PETSC_MISSING_SIGQUIT #define PETSC_MISSING_SIGQUIT 1 #endif #ifndef PETSC_MISSING_SIGBUS #define PETSC_MISSING_SIGBUS 1 #endif #ifndef PETSC_HAVE_WINSOCK2_H #define PETSC_HAVE_WINSOCK2_H 1 #endif #ifndef PETSC_MISSING_SIGALRM #define PETSC_MISSING_SIGALRM 1 #endif #ifndef PETSC_NEEDS_UTYPE_TYPEDEFS #define PETSC_NEEDS_UTYPE_TYPEDEFS 1 #endif #ifndef PETSC_MISSING_SIGKILL #define PETSC_MISSING_SIGKILL 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #endif **** C specific Configure header /tmp/petsc-WwR5UX/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN typedef int int32_t; typedef int mode_t; typedef int pid_t; #if defined(__cplusplus) extern "C" { #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); } #else #include int getdomainname(char *, size_t); double drand48(void); void srand48(long int); #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- External package threadcomm does not work with Microsoft compilers ******************************************************************************* File "./config/configure.py", line 272, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/framework.py", line 935, in configure child.configure() File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 567, in configure self.consistencyChecks() File "/cygdrive/c/cygwin/packages/petsc-dev/config/PETSc/package.py", line 34, in consistencyChecks config.package.Package.consistencyChecks(self) File "/cygdrive/c/cygwin/packages/petsc-dev/config/BuildSystem/config/package.py", line 552, in consistencyChecks raise RuntimeError('External package '+self.name+' does not work with Microsoft compilers') ================================================================================ Finishing Configure Run at Fri Jan 31 12:36:52 2014 ================================================================================ From daveliu at mit.edu Fri Jan 31 16:53:53 2014 From: daveliu at mit.edu (David Liu) Date: Fri, 31 Jan 2014 17:53:53 -0500 Subject: [petsc-users] mumps running out of memory, depending on an overall numerical factor? Message-ID: Hi, I'm solving a 3d problem with mumps. When I increased the grid size to 70x60x20 with 6 unknowns per point, I started noticing that the program was crashing at runtime at the factoring stage, with the mumps error code: -17 The internal send buffer that was allocated dynamically by MUMPS on the processor is too small. The user should increase the value of ICNTL(14) before calling MUMPS again. However, when I increase the grid spacing in the z direction by about 50%, this crash does not happen. Why would how much memory an LU factorization uses depend on an overall numerical factor (for part of the matrix at least) like this? -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Fri Jan 31 20:51:34 2014 From: jed at jedbrown.org (Jed Brown) Date: Fri, 31 Jan 2014 19:51:34 -0700 Subject: [petsc-users] mumps running out of memory, depending on an overall numerical factor? In-Reply-To: References: Message-ID: <87r47nbl55.fsf@jedbrown.org> David Liu writes: > Hi, I'm solving a 3d problem with mumps. When I increased the grid size to > 70x60x20 with 6 unknowns per point, I started noticing that the program was > crashing at runtime at the factoring stage, with the mumps error code: > > -17 The internal send buffer that was allocated dynamically by MUMPS on the > processor is too small. > The user should increase the value of ICNTL(14) before calling MUMPS again. > > However, when I increase the grid spacing in the z direction by about 50%, > this crash does not happen. > > Why would how much memory an LU factorization uses depend on an overall > numerical factor (for part of the matrix at least) like this? I'm not sure exactly what you're asking, but the complexity of direct solves depend on the minimal vertex separators in the sparse matrix/graph. Yours will be s=60*20*6 (more if your stencil needs second neighbors). The memory usage scales with s^2 and the factorization time scales with s^3. -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 835 bytes Desc: not available URL: