[petsc-users] petsc make test error

[Mark Porter]

I am having trouble with the make test once petsc configure and I have 
run make all.  The error is as follows:

Running test examples to verify correct installation
Using PETSC_DIR=/home/porterma/Applications/petsc-dev and 
PETSC_ARCH=linux-gnu-c-debug
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 
MPI process
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 
MPI processes
--------------Error detected during compile or link!-----------------------
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials ex5f
---------------------------------------------------------------------------
/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/bin/mpif90 -c  
-Wall -Wno-unused-variable -g  
-I/home/porterma/Applications/petsc-dev/include 
-I/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/include    -o 
ex5f.o ex5f.F
Warning: Nonconforming tab character in column 1 of line 3099
Warning: Nonconforming tab character in column 1 of line 5574
Warning: Nonconforming tab character in column 1 of line 7846
Warning: Nonconforming tab character in column 1 of line 10114
Warning: Nonconforming tab character in column 1 of line 12423
/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/bin/mpif90 -Wall 
-Wno-unused-variable -g  -o ex5f ex5f.o 
-L/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/lib  -lpetsc 
-lpthread 
-Wl,-rpath,/home/porterma/Applications/petsc-dev/linux-gnu-c-debug/lib 
-lflapack -lfblas -lhdf5_fortran -lhdf5 -lhdf5hl_fortran -lhdf5_hl -lz 
-L/usr/lib/gcc/x86_64-redhat-linux6E/4.4.6 -lmpi_f90 -lmpi_f77 
-lgfortran -lm -lm -lm -lm -lm -lm -lm -lm -lmpi_cxx -lstdc++ -lmpi_cxx 
-lstdc++ -ldl -lmpi -lrt -lnsl -lutil -lgcc_s -lpthread -ldl
ex5f.o: In function `MAIN__':
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:94: 
undefined reference to `snescreate_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:112: 
undefined reference to `dmcreateglobalvector_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:113: 
undefined reference to `vecduplicate_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:124: 
undefined reference to `dmdagetcorners_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:126: 
undefined reference to `dmdagetghostcorners_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:145: 
undefined reference to `snessetdm_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:153: 
undefined reference to `snessetfromoptions_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:165: 
undefined reference to `snesgetiterationnumber_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:177: 
undefined reference to `vecdestroy_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:178: 
undefined reference to `vecdestroy_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:179: 
undefined reference to `snesdestroy_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:180: 
undefined reference to `dmdestroy_'
ex5f.o: In function `forminitialguess_':
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:226: 
undefined reference to `dmgetlocalvector_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:239: 
undefined reference to `dmlocaltoglobalbegin_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:240: 
undefined reference to `dmlocaltoglobalend_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:241: 
undefined reference to `dmrestorelocalvector_'
ex5f.o: In function `formjacobianlocal_':
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:462: 
undefined reference to `matsetvalueslocal_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:477: 
undefined reference to `matsetvalueslocal_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:481: 
undefined reference to `matassemblybegin_'
/home/porterma/Applications/petsc-dev/src/snes/examples/tutorials/ex5f.F:482: 
undefined reference to `matassemblyend_'
collect2: ld returned 1 exit status
make[3]: [ex5f] Error 1 (ignored)
/bin/rm -f ex5f.o
Completed test examples


Any suggestions would be helpful.

Thanks.
porter


-- 
Mark L. Porter, Ph.D.
Earth&  Environmental Sciences (EES-14)
Los Alamos National Laboratory
work: 505.606.1971
cell: 541.517.2761
porterma at lanl.gov

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