[petsc-users] problems using ilu dt of superlu
Tobias Neckel
neckel at in.tum.de
Thu May 31 08:18:49 CDT 2012
Dear Matt,
> I know it involves another build, but turning on debugging is really
> essential for tracking down errors like this. Can you
> reconfigure with debugging under a different PETSC_ARCH and send the
trace?
we built the debug version of petsc and now get the attached output
(with and without valgrind) instead of a segfault for the test under
consideration.
Interestingly, the code runs now fully (with all the respective error
messages of petsc) and completes *successfully* the different 5 test
cases, despite the errors in all of them. The related code lines of the
PETScNonLinearSolver.cpp (365, 367, and 369) exactly are the newly
inserted code lines:
_ierr = PCFactorSetUpMatSolverPackage(pc);
_ierr = PCFactorGetMatrix(pc,&F);
_ierr = MatSuperluSetILUDropTol(F,1.0e-3);
What I forgot to mention in the previous email is that we use the ILU
with GMRES in the linear solve inside a snes non-linear problem ...
hence, we have a call to SNESCreate() and fetch the ksp from there
(different to ex52.c).
It looks like setting up the PC is not working correctly even if we
successfully use it before. Did we miss additional changes in the setup
from 3.0 to 3.2? Would the full source file help for clarification in
this case?
Thanks and best regards
Tobias
On 30.05.2012 20:35, Matthew Knepley wrote:
> On Wed, May 30, 2012 at 2:29 PM, Tobias Neckel <neckel at in.tum.de
> <mailto:neckel at in.tum.de>> wrote:
>
> Hello,
>
> we recently upgraded from 3.0.0-p11 to 3.2-p7 and are facing a
> problem in one of our test cases: We use seqaij matrix format and
> GMRES with ILU dt.
>
> Knowing that the ILUdt has been replaced by superlu's version, we
> therefore configured our petsc installation with
> ---
> -PETSC_ARCH=petsc-3.2-serial
> --prefix=/work_fast/liebm/__petsc-3.2-serial/ --with-debugging=0
> --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1
> --with-mpi=0
> ----
>
>
> I know it involves another build, but turning on debugging is really
> essential for tracking down errors like this. Can you
> reconfigure with debugging under a different PETSC_ARCH and send the trace?
>
> Thanks
>
> Matt
>
> resulting in a nicely compiled lib/libsuperlu_4.2.a.
>
> Also, ex52.c works (with ILU as a solver).
>
> Hence, in our code, we replaced the former single-line command
> _ierr = PCFactorSetDropTolerance(...__stuff...);
> by the code of ex52.c:
> Mat F;
> _ierr = PCFactorSetMatSolverPackage(__pc,MATSOLVERSUPERLU);
> _ierr = PCFactorSetUpMatSolverPackage(__pc);/* call
> MatGetFactor() to create F */
> _ierr = PCFactorGetMatrix(pc,&F);
> _ierr = MatSuperluSetILUDropTol(F,1.__0e-3);
>
> After some smooting, the compile and link works now fine, but
> running the test case results in a segfault; here is the
> corresponding valgrind output:
>
> ==17405== Invalid read of size 4
> ==17405== at 0x1B15245: MatGetFactor (in
> /work_fast/liebm/workspace/p1/__src/build/debug/dim2/fluid/__peano-fluid)
> ==17405== by 0x1CDF709: PCFactorSetUpMatSolverPackage___Factor
> (in
> /work_fast/liebm/workspace/p1/__src/build/debug/dim2/fluid/__peano-fluid)
> ==17405== by 0x1B3F7F9: PCFactorSetUpMatSolverPackage (in
> /work_fast/liebm/workspace/p1/__src/build/debug/dim2/fluid/__peano-fluid)
> ==17405== by 0x19284F5:
> peano::petsc::__PETScNonLinearSolver::__setupLinearSolver(_p_KSP*&,
> std::string, std::string, double, double, int)
> (PETScNonLinearSolver.cpp:365)
> ==17405== by 0x1926DF2:
> peano::petsc::__PETScNonLinearSolver::__initialize(int, int, int)
> (PETScNonLinearSolver.cpp:242)
> ==17405== by 0x901225:
> peano::fluid::__NonLinearTrivialgridFluidSimul__ation::__implementSetInitialValue(bool,
> double, int, double) (__NonLinearTrivialgridFluidSimul__ation.cpp:540)
> ==17405== by 0x17AE3C8:
> peano::fluid::__SteadyStateIntegrationTestChan__nel::__testTrivialgrid3x3ComputeNavie__rStokesFunction()
> (__SteadyStateIntegrationTestChan__nel.cpp:114)
> ==17405== by 0x17B28A8:
> peano::fluid::__SteadyStateIntegrationTestChan__nel::run()
> (__SteadyStateIntegrationTestChan__nel.cpp:484)
> ==17405== by 0x19BDCB3: tarch::tests::__TestCaseCollection::run()
> (TestCaseCollection.cpp:42)
> ==17405== by 0x19BDCB3: tarch::tests::__TestCaseCollection::run()
> (TestCaseCollection.cpp:42)
> ==17405== by 0x408A9D:
> peano::__IntegrationTestCaseRunner::__run(tarch::configuration::__IntegrationTestConfiguration
> const&) (IntegrationTestCaseRunner.__cpp:127)
> ==17405== by 0x412C2E: main (main.cpp:205)
> ==17405== Address 0x1e8 is not stack'd, malloc'd or (recently) free'd
> ==17405==
> [0]PETSC ERROR:
> ------------------------------__------------------------------__------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation
> Violation, probably memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/__petsc-as/documentation/faq.__html#valgrind[0]PETSC
> <http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC>
> ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
> find memory corruption errors
> [0]PETSC ERROR: configure using --with-debugging=yes, recompile,
> link, and run
> [0]PETSC ERROR: to get more information on the crash.
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------__------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR:
> ------------------------------__------------------------------__------------
> [0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15
> 09:30:51 CDT 2012
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------__------------------------------__------------
> [0]PETSC ERROR: ./build/debug/dim2/fluid/__peano-fluid on a
> petsc-3.2 named atsccs58 by liebm Wed May 30 20:06:30 2012
> [0]PETSC ERROR: Libraries linked from
> /work_fast/liebm/petsc-3.2-__serial/lib
> [0]PETSC ERROR: Configure run at Tue May 29 21:05:34 2012
> [0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial
> --prefix=/work_fast/liebm/__petsc-3.2-serial/ --with-debugging=0
> --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1
> --with-mpi=0
> [0]PETSC ERROR:
> ------------------------------__------------------------------__------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
>
>
> Did we miss something (keeping in mind that we use ILU now as a
> preconditioner in combination with GMRES)? Any suggestions are
> warmly welcome ;-).
>
> Thanks in advance and best regards
> Tobias
>
-------------- next part --------------
1338467468 14:31:08 [atsccs58] debug /::validateProgramArguments(int,char**) Using configuration file configuration-integration-test.xml
1338467468 14:31:08 [atsccs58] debug peano::petsc::PETScFrame::init() received parameters: ./build/debug/dim2/fluid/peano-fluid configuration-integration-test.xml
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:08 info UserInterface::writeHeader() peano - release T2
14:31:08 info UserInterface::writeHeader() 2d, loaded components: stacks geometry plotter trivialgrid fluid fluid-scenario grid petsc ode
14:31:08 info UserInterface::writeHeader() opts:
14:31:08 info UserInterface::writeHeader() grid-opts: d-loop persistent-attr packed
14:31:08 info UserInterface::writeHeader() $Revision: 1.88 $
14:31:08 info UserInterface::writeHeader() 2005 - 2008 Tobias Neckel, Tobias Weinzierl, TUM, Informatik V
test testTrivialgrid3x3ComputeNavierStokesFunction
14:31:08 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:08 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 16 vertex dofs and 9 cell dofs
14:31:08 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 4, 4, domain size: 1, 1, domain offset: 0, 0
14:31:08 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: FINITEDIFF (matrix-free=0)
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:08 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:08 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:08 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:08 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0s,7.9155e-05s)
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 111 MB
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:08 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0s,0.00111055s)
14:31:08 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 1 steps and specified step size=0.001
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 85
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 58
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: Wrong type of object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 62
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000112295 (calendar time)
test testTrivialgrid3x3FreeChannelTwoPreSteps(JACOBIAN_ASSEMBLING_ANALYTICAL)
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps(ANALYTICAL) running test case
14:31:08 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:08 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 16 vertex dofs and 9 cell dofs
14:31:08 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 4, 4, domain size: 1, 1, domain offset: 0, 0
14:31:08 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: FINITEDIFF (matrix-free=0)
14:31:08 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:08 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:08 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:08 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:08 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0s,6.98566e-05s)
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 111 MB
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:08 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0s,0.000394344s)
14:31:08 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 2 steps and specified step size=0.001
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 85
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 58
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: Wrong type of object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 62
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:08 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000110388 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 6.97099e-14; LinearIterations: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0 (CPU time), 0.00081563 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000109434 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 6.49184e-16; LinearIterations: 1
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 1 iterations; conv. reason=4
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:08 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:1
14:31:08 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | 1.01140e-13 | -1 | 9 | 6 | 1.00000e-02 | 3 | 0.00000e+00 | 112 | 0.00000e+00, 0.00000e+00,
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps() testTrivialgrid3x3FreeChannelTwoPreSteps(ANALYTICAL) OK
test testTrivialgrid3x3FreeChannelTwoPreSteps(JACOBIAN_ASSEMBLING_FINITEDIFF)
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps(FINITEDIFF) running test case
14:31:08 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:08 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 16 vertex dofs and 9 cell dofs
14:31:08 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 4, 4, domain size: 1, 1, domain offset: 0, 0
14:31:08 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: FINITEDIFF (matrix-free=0)
14:31:08 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:08 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:08 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:08 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:08 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0s,7.20024e-05s)
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 112 MB
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:08 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0s,0.000437021s)
14:31:08 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 2 steps and specified step size=0.001
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 85
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 58
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: Wrong type of object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 62
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:08 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000109673 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 6.97099e-14; LinearIterations: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0 (CPU time), 0.000813007 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000109196 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 6.49184e-16; LinearIterations: 1
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 1 iterations; conv. reason=4
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:08 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:1
14:31:08 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | 1.01140e-13 | -1 | 9 | 6 | 0.00000e+00 | 3 | 0.00000e+00 | 112 | 0.00000e+00, 0.00000e+00,
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps() testTrivialgrid3x3FreeChannelTwoPreSteps(FINITEDIFF) OK
test testTrivialgrid9x9ObstacleInChannelNoPreSteps(JACOBIAN_ASSEMBLING_ANALYTICAL)
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps(ANALYTICAL) running test case
14:31:08 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:08 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 100 vertex dofs and 81 cell dofs
14:31:08 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 10, 10, domain size: 1, 1, domain offset: 0, 0
14:31:08 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: ANALYTICAL (matrix-free=0)
14:31:08 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:08 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:08 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:08 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:08 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0s,0.000596762s)
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 112 MB
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:08 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0s,0.000961542s)
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 0 steps and specified step size=0.001
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 85
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 58
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: Wrong type of object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 62
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000845671 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 3.24893; LinearIterations: 0
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0 (CPU time), 0.00197101 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000895262 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 0.445035; LinearIterations: 2
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0 (CPU time), 0.00191617 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000865698 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 2: 6.48912e-05; LinearIterations: 7
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0 (CPU time), 0.00186586 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000849247 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 3: 3.69354e-13; LinearIterations: 12
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 3 iterations; conv. reason=3
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:08 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:3
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -1.00000e+00 | -1 | 72 | 56 | 3.00000e-02 | -1 | -1.00000e+00 | 113 | 8.54262e+01, -1.24345e-14,
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps() testTrivialgrid9x9ObstacleInChannelNoPreSteps(ANALYTICAL) OK
test testTrivialgrid9x9ObstacleInChannelNoPreSteps(JACOBIAN_ASSEMBLING_FINITEDIFF)
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps(FINITEDIFF) running test case
14:31:08 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:08 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 100 vertex dofs and 81 cell dofs
14:31:08 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 10, 10, domain size: 1, 1, domain offset: 0, 0
14:31:08 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: ANALYTICAL (matrix-free=0)
14:31:08 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:08 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:08 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:08 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:08 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0s,0.000597954s)
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 112 MB
14:31:08 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:08 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0s,0.00101686s)
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 0 steps and specified step size=0.001
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 85
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 58
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: Wrong type of object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:08 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Invalid argument!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:08 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:08 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:08 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:08 warning petscError::logPETScError PetscErrorCode is: 62
14:31:08 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000849247 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 3.24893; LinearIterations: 0
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0 (CPU time), 0.00209475 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000848532 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 0.445035; LinearIterations: 2
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0 (CPU time), 0.00186658 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000863552 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 2: 6.48912e-05; LinearIterations: 7
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.01 (CPU time), 0.00210094 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.000846863 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 3: 3.69354e-13; LinearIterations: 12
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 3 iterations; conv. reason=3
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:08 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:3
14:31:08 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:08 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -1.00000e+00 | -1 | 72 | 56 | 3.00000e-02 | -1 | -1.00000e+00 | 113 | 8.54262e+01, -1.24345e-14,
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps() testTrivialgrid9x9ObstacleInChannelNoPreSteps(FINITEDIFF) OK
14:31:08 info tarch::tests::TestCaseCollection::run() running test case collection "fluid" .. ok
14:31:08 info tarch::tests::TestCaseCollection::run() running test case collection "fluid-parallel" .. ok
14:31:08 info tarch::tests::TestCaseCollection::run() running test case collection "integration tests" .... ok
-------------- next part --------------
==3762== Memcheck, a memory error detector
==3762== Copyright (C) 2002-2009, and GNU GPL'd, by Julian Seward et al.
==3762== Using Valgrind-3.6.0.SVN-Debian and LibVEX; rerun with -h for copyright info
==3762== Command: ./build/debug/dim2/fluid/peano-fluid configuration-integration-test.xml
==3762==
1338467464 14:31:04 [atsccs58] debug /::validateProgramArguments(int,char**) Using configuration file configuration-integration-test.xml
1338467464 14:31:04 [atsccs58] debug peano::petsc::PETScFrame::init() received parameters: ./build/debug/dim2/fluid/peano-fluid configuration-integration-test.xml
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:04 info UserInterface::writeHeader() peano - release T2
14:31:04 info UserInterface::writeHeader() 2d, loaded components: stacks geometry plotter trivialgrid fluid fluid-scenario grid petsc ode
14:31:04 info UserInterface::writeHeader() opts:
14:31:04 info UserInterface::writeHeader() grid-opts: d-loop persistent-attr packed
14:31:04 info UserInterface::writeHeader() $Revision: 1.88 $
14:31:04 info UserInterface::writeHeader() 2005 - 2008 Tobias Neckel, Tobias Weinzierl, TUM, Informatik V
test testTrivialgrid3x3ComputeNavierStokesFunction
14:31:05 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:05 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 16 vertex dofs and 9 cell dofs
14:31:05 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 4, 4, domain size: 1, 1, domain offset: 0, 0
14:31:05 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: FINITEDIFF (matrix-free=0)
14:31:05 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:05 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:05 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:05 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:05 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:06 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:06 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0.06s,0.0543659s)
14:31:06 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 277 MB
14:31:06 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:06 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0.44s,0.440282s)
14:31:06 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:06 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 1 steps and specified step size=0.001
14:31:06 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:06 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:06 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:06 warning petscError::logPETScError PetscErrorCode is: 85
14:31:06 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:06 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:06 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:06 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:06 warning petscError::logPETScError PetscErrorCode is: 58
14:31:06 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
==3762== Conditional jump or move depends on uninitialised value(s)
==3762== at 0x1CC43A8: MatSuperluSetILUDropTol (superlu.c:455)
==3762== by 0x192899D: peano::petsc::PETScNonLinearSolver::setupLinearSolver(_p_KSP*&, std::string, std::string, double, double, int) (PETScNonLinearSolver.cpp:368)
==3762== by 0x192716E: peano::petsc::PETScNonLinearSolver::initialize(int, int, int) (PETScNonLinearSolver.cpp:242)
==3762== by 0x901675: peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue(bool, double, int, double) (NonLinearTrivialgridFluidSimulation.cpp:540)
==3762== by 0x17AE3D8: peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3ComputeNavierStokesFunction() (SteadyStateIntegrationTestChannel.cpp:114)
==3762== by 0x17B28C7: peano::fluid::SteadyStateIntegrationTestChannel::run() (SteadyStateIntegrationTestChannel.cpp:487)
==3762== by 0x19BE3B3: tarch::tests::TestCaseCollection::run() (TestCaseCollection.cpp:42)
==3762== by 0x19BE3B3: tarch::tests::TestCaseCollection::run() (TestCaseCollection.cpp:42)
==3762== by 0x408BCD: peano::IntegrationTestCaseRunner::run(tarch::configuration::IntegrationTestConfiguration const&) (IntegrationTestCaseRunner.cpp:127)
==3762== by 0x412D5E: main (main.cpp:205)
==3762==
==3762== Conditional jump or move depends on uninitialised value(s)
==3762== at 0x1CC43FB: MatSuperluSetILUDropTol (superlu.c:455)
==3762== by 0x192899D: peano::petsc::PETScNonLinearSolver::setupLinearSolver(_p_KSP*&, std::string, std::string, double, double, int) (PETScNonLinearSolver.cpp:368)
==3762== by 0x192716E: peano::petsc::PETScNonLinearSolver::initialize(int, int, int) (PETScNonLinearSolver.cpp:242)
==3762== by 0x901675: peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue(bool, double, int, double) (NonLinearTrivialgridFluidSimulation.cpp:540)
==3762== by 0x17AE3D8: peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3ComputeNavierStokesFunction() (SteadyStateIntegrationTestChannel.cpp:114)
==3762== by 0x17B28C7: peano::fluid::SteadyStateIntegrationTestChannel::run() (SteadyStateIntegrationTestChannel.cpp:487)
==3762== by 0x19BE3B3: tarch::tests::TestCaseCollection::run() (TestCaseCollection.cpp:42)
==3762== by 0x19BE3B3: tarch::tests::TestCaseCollection::run() (TestCaseCollection.cpp:42)
==3762== by 0x408BCD: peano::IntegrationTestCaseRunner::run(tarch::configuration::IntegrationTestConfiguration const&) (IntegrationTestCaseRunner.cpp:127)
==3762== by 0x412D5E: main (main.cpp:205)
==3762==
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: Invalid Pointer to Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:06 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:06 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:06 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:06 warning petscError::logPETScError PetscErrorCode is: 64
14:31:06 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:07 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0409479 (calendar time)
test testTrivialgrid3x3FreeChannelTwoPreSteps(JACOBIAN_ASSEMBLING_ANALYTICAL)
14:31:07 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps(ANALYTICAL) running test case
14:31:07 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:07 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 16 vertex dofs and 9 cell dofs
14:31:07 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 4, 4, domain size: 1, 1, domain offset: 0, 0
14:31:07 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: FINITEDIFF (matrix-free=0)
14:31:07 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:07 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:07 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:07 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:07 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:07 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:07 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:07 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0s,0.00335407s)
14:31:07 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 283 MB
14:31:07 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:07 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0.01s,0.0105739s)
14:31:07 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:07 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 2 steps and specified step size=0.001
14:31:07 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:07 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:07 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:07 warning petscError::logPETScError PetscErrorCode is: 85
14:31:07 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:07 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:07 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:07 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:07 warning petscError::logPETScError PetscErrorCode is: 58
14:31:07 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: Invalid Pointer to Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:07 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:07 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:07 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:07 warning petscError::logPETScError PetscErrorCode is: 64
14:31:07 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:07 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:07 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0 (CPU time), 0.00469422 (calendar time)
14:31:07 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 1.18128e-13; LinearIterations: 0
14:31:07 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:07 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.08 (CPU time), 0.0804036 (calendar time)
14:31:08 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.01 (CPU time), 0.0048914 (calendar time)
14:31:08 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 7.45947e-16; LinearIterations: 1
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 1 iterations; conv. reason=4
14:31:08 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:08 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:1
14:31:08 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | 2.90332e-13 | -1 | 9 | 6 | 8.00000e-01 | 3 | 0.00000e+00 | 284 | 0.00000e+00, 0.00000e+00,
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps() testTrivialgrid3x3FreeChannelTwoPreSteps(ANALYTICAL) OK
test testTrivialgrid3x3FreeChannelTwoPreSteps(JACOBIAN_ASSEMBLING_FINITEDIFF)
14:31:08 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps(FINITEDIFF) running test case
14:31:08 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:08 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 16 vertex dofs and 9 cell dofs
14:31:08 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 4, 4, domain size: 1, 1, domain offset: 0, 0
14:31:08 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: FINITEDIFF (matrix-free=0)
14:31:08 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:08 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:08 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:08 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:09 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:09 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:09 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0s,0.00506377s)
14:31:09 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 288 MB
14:31:09 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:09 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0.01s,0.0144298s)
14:31:09 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:09 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 2 steps and specified step size=0.001
14:31:09 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:09 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:09 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:09 warning petscError::logPETScError PetscErrorCode is: 85
14:31:09 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:09 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:09 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:09 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:09 warning petscError::logPETScError PetscErrorCode is: 58
14:31:09 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: Invalid Pointer to Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:09 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:09 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:09 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:09 warning petscError::logPETScError PetscErrorCode is: 64
14:31:09 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:09 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:09 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.01 (CPU time), 0.00466967 (calendar time)
14:31:09 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 1.18128e-13; LinearIterations: 0
14:31:09 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:09 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.03 (CPU time), 0.0290048 (calendar time)
14:31:09 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.01 (CPU time), 0.00472021 (calendar time)
14:31:09 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 7.45947e-16; LinearIterations: 1
14:31:09 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 1 iterations; conv. reason=4
14:31:09 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:09 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:1
14:31:09 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | 2.90332e-13 | -1 | 9 | 6 | 7.00000e-02 | 3 | 1.00000e-02 | 288 | 0.00000e+00, 0.00000e+00,
14:31:09 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid3x3FreeChannelTwoPreSteps() testTrivialgrid3x3FreeChannelTwoPreSteps(FINITEDIFF) OK
test testTrivialgrid9x9ObstacleInChannelNoPreSteps(JACOBIAN_ASSEMBLING_ANALYTICAL)
14:31:09 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps(ANALYTICAL) running test case
14:31:09 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:09 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 100 vertex dofs and 81 cell dofs
14:31:09 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 10, 10, domain size: 1, 1, domain offset: 0, 0
14:31:09 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: ANALYTICAL (matrix-free=0)
14:31:09 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:09 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:09 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:10 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:10 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:12 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:12 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:12 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0.03s,0.0306334s)
14:31:12 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 289 MB
14:31:12 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:12 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0.03s,0.0383279s)
14:31:12 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:12 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:12 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 0 steps and specified step size=0.001
14:31:12 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:12 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:12 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:12 warning petscError::logPETScError PetscErrorCode is: 85
14:31:12 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:12 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:12 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:12 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:12 warning petscError::logPETScError PetscErrorCode is: 58
14:31:12 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: Invalid Pointer to Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:12 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:12 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:12 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:12 warning petscError::logPETScError PetscErrorCode is: 64
14:31:12 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:12 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:12 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:12 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0394928 (calendar time)
14:31:12 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 3.24893; LinearIterations: 0
14:31:12 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:12 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:12 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.08 (CPU time), 0.0848253 (calendar time)
14:31:12 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0393052 (calendar time)
14:31:12 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 0.445035; LinearIterations: 2
14:31:13 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:13 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:13 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.07 (CPU time), 0.0622749 (calendar time)
14:31:13 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0393724 (calendar time)
14:31:13 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 2: 6.48912e-05; LinearIterations: 7
14:31:13 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:13 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:13 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.06 (CPU time), 0.0622993 (calendar time)
14:31:13 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0419505 (calendar time)
14:31:13 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 3: 3.69087e-13; LinearIterations: 12
14:31:13 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:13 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 3 iterations; conv. reason=3
14:31:13 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:13 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:3
14:31:13 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:13 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -1.00000e+00 | -1 | 72 | 56 | 8.70000e-01 | -1 | -1.00000e+00 | 290 | 8.54262e+01, -7.99361e-15,
14:31:13 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps() testTrivialgrid9x9ObstacleInChannelNoPreSteps(ANALYTICAL) OK
test testTrivialgrid9x9ObstacleInChannelNoPreSteps(JACOBIAN_ASSEMBLING_FINITEDIFF)
14:31:13 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps(FINITEDIFF) running test case
14:31:13 info peano::fluid::AbstractCalculateF::AbstractCalculateF() using gravity with values: 0, 0
14:31:13 info peano::trivialgrid::TrivialgridDataContainer::allocateMemory() allocate grid with 100 vertex dofs and 81 cell dofs
14:31:13 info peano::trivialgrid::Trivialgrid::Trivialgrid(...) Trivialgrid(): number of grid points: 10, 10, domain size: 1, 1, domain offset: 0, 0
14:31:13 info peano::fluid::TrivialgridFluidRunner::createJacobianAdapterAndTrivialgrid() creating Jacobian instances for assembling type: ANALYTICAL (matrix-free=0)
14:31:13 warning peano::ode::ODESolver::checkSettings() no restart writing in use!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetFactor() line 3929 in /work_fast/liebm/petsc-3.2-p7/src/mat/interface/matrix.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage_Factor() line 17 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorSetUpMatSolverPackage() line 26 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factor.c
14:31:13 info peano::fluid::FluidSimulation::runFluidSimulation() preparing the grid
14:31:13 info peano::fluid::TrivialgridFluidSimulation::parseGeometry() starting geometry parsing
14:31:14 info peano::fluid::FluidSimulation::runFluidSimulation() counting the inner cells and setting boundary conditions
14:31:14 info peano::fluid::TrivialgridFluidSimulation::updateGrid updating grid...
14:31:16 info peano::fluid::FluidSimulation::implementSetInitialValue() assembling the matrix
14:31:16 info peano::fluid::TrivialgridFluidSimulation::createPETScSolver() PETSc KSP Object info: , type: cg, maximum iterations=10000, rtol=1e-07, atol=1e-07, divtol=10000, left precond.; PETSc PC Object info: , type: jacobi,
14:31:16 info peano::fluid::TrivialgridFluidSimulation::assembleMatrix()::Assemble Q iteration total number of clock ticks within block (cpu-time,calendar-time): (0.03s,0.0327389s)
14:31:16 info peano::fluid::FluidSimulation::implementSetInitialValue() memory consumption after matrix assemblation: 290 MB
14:31:16 info peano::fluid::FluidSimulation::implementSetInitialValue() global time for matrix assemblation:
14:31:16 info FluidSimulation::implementSetInitialValue() total number of clock ticks within block (cpu-time,calendar-time): (0.04s,0.0402725s)
14:31:16 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:16 info UserInterface::writeFluidTimeStepInfoHeader() || time step || T_sim total || norm(du/u)_2h || norm(du/u)_max|| norm(du)_2h || norm(du)_max || norm(dp/p)_2h || norm(dp/p)_max|| norm(dp)_2h || norm(dp)_max || resdiuum || depth || \#cells || \#dofNodes || cpu sec./step || \#its/LGS-sol. || cpu sec./LGS-sol. || mem usage MB || f_glob on nr. 4
14:31:16 info peano::fluid::NonLinearTrivialgridFluidSimulation::implementSetInitialValue() starting pseudo-timestepping with 0 steps and specified step size=0.001
14:31:16 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 365 in petscpetsc/PETScNonLinearSolver.cpp
14:31:16 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 365, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:16 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:16 warning petscError::logPETScError PetscErrorCode is: 85
14:31:16 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: Matrix not yet factored; call after KSPSetUp() or PCSetUp()!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PCFactorGetMatrix_Factor() line 176 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/impls/factor/factimpl.c
[0]PETSC ERROR: PCFactorGetMatrix() line 1220 in /work_fast/liebm/petsc-3.2-p7/src/ksp/pc/interface/precon.c
14:31:16 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Operation done in wrong order!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 367 in petscpetsc/PETScNonLinearSolver.cpp
14:31:16 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 367, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:16 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:16 warning petscError::logPETScError PetscErrorCode is: 58
14:31:16 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: Invalid Pointer to Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSuperluSetILUDropTol() line 455 in /work_fast/liebm/petsc-3.2-p7/src/mat/impls/aij/seq/superlu/superlu.c
14:31:16 warning petscError::logPETScError Attention: no PetscErrorBaseMessage imitated!
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument: see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 7, Thu Mar 15 09:30:51 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./build/debug/dim2/fluid/peano-fluid on a petsc-3.2 named atsccs58 by liebm Thu May 31 14:31:04 2012
[0]PETSC ERROR: Libraries linked from /work_fast/liebm/petsc-3.2-serial-debug/lib
[0]PETSC ERROR: Configure run at Thu May 31 10:27:55 2012
[0]PETSC ERROR: Configure options --PETSC_ARCH=petsc-3.2-serial-debug --prefix=/work_fast/liebm/petsc-3.2-serial-debug --with-debugging=1 --with-cxx=gcc --with-fc=gfortran --with-cc=gcc --download-superlu=1 --with-mpi=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: peano::petsc::PETScNonLinearSolver::setupLinearSolver() line 369 in petscpetsc/PETScNonLinearSolver.cpp
14:31:16 error petscError::logPetscTraceBackErrorHandler Major PETSc error occured in function peano::petsc::PETScNonLinearSolver::setupLinearSolver, line 369, dir. petsc, file petsc/PETScNonLinearSolver.cpp.
14:31:16 warning petscError::logPetscTraceBackErrorHandler Implementation not yet completed
14:31:16 warning petscError::logPETScError PetscErrorCode is: 64
14:31:16 warning petscError::logPETScError Attention: no MPI abort for main or unknown function imitated!
14:31:16 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:16 info peano::ode::ODESolver::solve() starting time integration. StartTime=0, endTime=1, startTimeStepNr=1, endTimeStepNr=1
14:31:16 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0396516 (calendar time)
14:31:16 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 0: 3.24893; LinearIterations: 0
14:31:16 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:16 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:17 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.06 (CPU time), 0.0622516 (calendar time)
14:31:17 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0400362 (calendar time)
14:31:17 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 1: 0.445035; LinearIterations: 2
14:31:17 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:17 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:17 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.06 (CPU time), 0.0621722 (calendar time)
14:31:17 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.03 (CPU time), 0.0395648 (calendar time)
14:31:17 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 2: 6.48912e-05; LinearIterations: 7
14:31:17 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:17 info peano::petsc::PETScNonLinearEquations::jacobianGrid() iteration started.
14:31:17 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesJacobian() runtime for Jacobian: 0.06 (CPU time), 0.0616219 (calendar time)
14:31:17 info peano::fluid::NonLinearTrivialgridFluidSimulation::computeNavierStokesFunction() runtime for B-evaluation: 0.04 (CPU time), 0.0397391 (calendar time)
14:31:17 info peano::petsc::PETScNonLinearEquations::monitorNonLinearSolver() residual norm at iteration 3: 3.69087e-13; LinearIterations: 12
14:31:17 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:17 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver completed in 3 iterations; conv. reason=3
14:31:17 info peano::petsc::PETScNonLinearSolver::solve() NLGS solver converged!
14:31:17 info peano::fluid::FluidSimulation::solveNonLinearSystem() non-linear solution completed with iterations:3
14:31:17 info peano::fluid::TrivialgridEventHandle2VTKWriter4FluidAdapter::endIteration
Accumulated and integrated outflow is: 0
14:31:17 info UserInterface::writeFluidTimeStepInfo(...) | 1 | 1.00000e-03 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | 0.00000e+00 | -nan | -nan | 0.00000e+00 | 0.00000e+00 | -1.00000e+00 | -1 | 72 | 56 | 7.70000e-01 | -1 | -1.00000e+00 | 290 | 8.54262e+01, -7.99361e-15,
14:31:17 info peano::fluid::SteadyStateIntegrationTestChannel::testTrivialgrid9x9ObstacleInChannelNoPreSteps() testTrivialgrid9x9ObstacleInChannelNoPreSteps(FINITEDIFF) OK
14:31:17 info tarch::tests::TestCaseCollection::run() running test case collection "fluid" .. ok
14:31:17 info tarch::tests::TestCaseCollection::run() running test case collection "fluid-parallel" .. ok
14:31:17 info tarch::tests::TestCaseCollection::run() running test case collection "integration tests" .... ok
==3762==
==3762== HEAP SUMMARY:
==3762== in use at exit: 2,688 bytes in 64 blocks
==3762== total heap usage: 335,866 allocs, 335,802 frees, 64,575,358 bytes allocated
==3762==
==3762== LEAK SUMMARY:
==3762== definitely lost: 312 bytes in 3 blocks
==3762== indirectly lost: 2,376 bytes in 61 blocks
==3762== possibly lost: 0 bytes in 0 blocks
==3762== still reachable: 0 bytes in 0 blocks
==3762== suppressed: 0 bytes in 0 blocks
==3762== Rerun with --leak-check=full to see details of leaked memory
==3762==
==3762== For counts of detected and suppressed errors, rerun with: -v
==3762== Use --track-origins=yes to see where uninitialised values come from
==3762== ERROR SUMMARY: 10 errors from 2 contexts (suppressed: 4 from 4)
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