[petsc-users] Problem with running HDF5 example

[Mohamad M. Nasr-Azadani]

Thanks Barry. That fixed the problem, i.e. adding --download-hdf5

-M

On Tue, Sep 6, 2011 at 6:16 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:

>
>  Did you ./configure PETSc with the option --download-hdf5 or the option
> --with-hdf5-dir=directoryname ?
>
>   PETSc must be configured with hdf5 in a similar way to that it needs to
> be configured with hypre to use hypre
>
>   Barry
>
> On Sep 6, 2011, at 7:13 PM, Mohamad M. Nasr-Azadani wrote:
>
> > Hi guys,
> >
> > I was trying to run the example on HDF5,
> >
> http://www.mcs.anl.gov/petsc/petsc-as/snapshots/petsc-3.1/src/dm/da/examples/tutorials/ex10.c.html
> >
> > But I could not.
> > This is what I get:
> > ***************
> > >>make PETSC_DIR=/home/mmnasr/Softwares/petsc-3.1-p7
> PETSC_ARCH=linux-gnu-c-opt ex10
> >
> > /home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/bin/mpicc -o ex10.o
> -c -Wall -Wwrite-strings -Wno-strict-aliasing -O
> -I/home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/include
> -I/home/mmnasr/Softwares/petsc-3.1-p7/include
> -I/home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/include
> -D__INSDIR__=src/dm/da/examples/tutorials/ ex10.c
> > /home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/bin/mpicc -Wall
> -Wwrite-strings -Wno-strict-aliasing -O  -o ex10 ex10.o
>  -Wl,-rpath,/home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/lib
> -L/home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/lib -lpetsc
>  -Wl,-rpath,/home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/lib
> -L/home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/lib -lml -lmpichcxx
> -lstdc++ -lHYPRE -lmpichcxx -lstdc++ -lflapack -lfblas -lnsl -lrt
> -L/home/mmnasr/Softwares/petsc-3.1-p7/linux-gnu-c-opt/lib
> -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/x86_64-linux-gnu -ldl
> -lmpich -lpthread -lrt -lgcc_s -lmpichf90 -lgfortran -lm -lm -lmpichcxx
> -lstdc++ -lmpichcxx -lstdc++ -ldl -lmpich -lpthread -lrt -lgcc_s -ldl
> > ex10.o: In function `main':
> > ex10.c:(.text+0x3b7): undefined reference to `PetscViewerHDF5Open'
> > collect2: ld returned 1 exit status
> > make: [ex10] Error 1 (ignored)
> > /bin/rm -f -f ex10.o
> >
> > ************
> > It seems that it does not find the compiled library and/or header files
> for it. Any ideas?
> >
> > Thanks,
> > Mohamad
> >
>
>
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