[petsc-users] Errors while install pets-dev

[Satish Balay]

On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:

> Dear Satish,
> 
> I switched to install it manually 

What do you mean? Did you get the nightly tarball?

> and encounter an error when "make test".

Did the build go through fine without errors??

Send over configure.log and make.log to petsc-maint.

Satish

> Here are error messages:
> 
> Completed building libraries
> =========================================
> Now to check if the libraries are working do: make test
> =========================================
> rebecca at YuanWork:~/soft/petsc-dev$ make test
> Running test examples to verify correct installation
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI
> process
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI
> processes
> --------------Error detected during compile or link!-----------------------
> See http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html
> /home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -c  -Wall
> -Wno-unused-variable -g
> -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include
> -I/home/rebecca/soft/petsc-dev/include
> -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include
> -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include
> -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include    -o ex5f.o ex5f.F
> /home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -Wall
> -Wno-unused-variable -g  -o ex5f ex5f.o
> -Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib
> -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lpetscsnes -lpetscksp
> -lpetscdm -lpetscmat -lpetscvec -lpetsc   -lX11
> -Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib
> -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lflapack -lfblas -lnsl
> -lrt -lm -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib
> -L/usr/lib/gcc/i486-linux-gnu/4.2.4 -ldl -lmpich -lopa -lpthread -lrt -lgcc_s
> -lmpichf90 -lgfortran -lm -lm -ldl -lmpich -lopa -lpthread -lrt -lgcc_s -ldl
> ex5f.o: In function `MAIN__':
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:103: undefined
> reference to `snescreate_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:120: undefined
> reference to `dacreateglobalvector_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:121: undefined
> reference to `vecduplicate_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:131: undefined
> reference to `dagetcorners_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:133: undefined
> reference to `dagetghostcorners_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:211: undefined
> reference to `snessetfromoptions_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:223: undefined
> reference to `snesgetiterationnumber_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:235: undefined
> reference to `matdestroy_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:236: undefined
> reference to `matdestroy_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:237: undefined
> reference to `vecdestroy_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:238: undefined
> reference to `vecdestroy_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:239: undefined
> reference to `snesdestroy_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:240: undefined
> reference to `dadestroy_'
> ex5f.o: In function `forminitialguess_':
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:286: undefined
> reference to `dmgetlocalvector_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:299: undefined
> reference to `dalocaltoglobal_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:300: undefined
> reference to `dmrestorelocalvector_'
> ex5f.o: In function `formjacobianlocal_':
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:523: undefined
> reference to `matsetvalueslocal_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:538: undefined
> reference to `matsetvalueslocal_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:542: undefined
> reference to `matassemblybegin_'
> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:543: undefined
> reference to `matassemblyend_'
> collect2: ld returned 1 exit status
> make[3]: [ex5f] Error 1 (ignored)
> /bin/rm -f ex5f.o
> Completed test examples
> 
> What could possibly wrong?
> 
> Thanks!
> 
> Rebecca
> 
> 
> 
> 
> Quoting Satish Balay <balay at mcs.anl.gov>:
> 
> > Sorry - forgot to mention the url
> > 
> > http://mail.openjdk.java.net/pipermail/build-dev/2007-December/000628.html
> > 
> > Satish
> > 
> > On Mon, 25 Jan 2010, Satish Balay wrote:
> > 
> > > Do you have to use proxy for your http connections? If so - perhaps
> > > you can try adding the settings to ~/.hgrc - as this url indicates and
> > > see if it fixes the problem.
> > > 
> > > Satish
> > > 
> > > On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
> > > 
> > > > Hi,All,
> > > > 
> > > > I try to install a pets-dev locally according to the instruction
> > > > 
> > > > http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html
> > > > 
> > > > I have installed mercurial, but when I get the second step, I get  some
> > > > error
> > > > like:
> > > > 
> > > > rebecca at YuanWork:~/soft$ hg clone
> > > > http://petsc.cs.iit.edu/petsc/petsc-dev
> > > > destination directory: petsc-dev
> > > > abort: error: Name or service not known
> > > > 
> > > > Is there anything wrong?
> > > > 
> > > > Thanks!
> > > > 
> > > > 
> > > 
> > > 
> > 
> > 
> > 
> 
> 
> 
>