[petsc-users] pets-3.1-p6 with CUDA: Unknown vector type: cuda!
Jakub Pola
jakub.pola at gmail.com
Fri Dec 10 05:33:37 CST 2010
After typing --with-cusp=1 and --with-thrust=1 library was compiled
successfully but when I want to make tests i got following error:
What could be the reason of that?
I have GTX 480 with drivers ver. 260
Ubuntu 10.10 32bit system with 2GB ram.
Core duo processor 2.2GHz.
Test.log:
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI
process
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[0]PETSC ERROR: INSTEAD the line number of the start of the
function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: [0] VecCUDACopyFromGPU line 188
src/vec/vec/impls/seq/seqcuda/veccuda.cu
[0]PETSC ERROR: [0] VecGetArray line 226
src/vec/vec/impls/mpi//home/kuba/External/petsc-dev/include/private/vecimpl.h
[0]PETSC ERROR: [0] VecCreateGhostWithArray line 581
src/vec/vec/impls/mpi/pbvec.c
[0]PETSC ERROR: [0] VecCreateGhost line 661
src/vec/vec/impls/mpi/pbvec.c
[0]PETSC ERROR: [0] MatFDColoringCreate_SeqAIJ line 21
src/mat/impls/aij/seq/fdaij.c
[0]PETSC ERROR: [0] MatFDColoringCreate line 376
src/mat/matfd/fdmatrix.c
[0]PETSC ERROR: [0] DMMGSetSNES line 562 src/snes/utils/damgsnes.c
[0]PETSC ERROR: [0] DMMGSetSNESLocal_Private line 933
src/snes/utils/damgsnes.c
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision:
488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16
2010 +0100
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex19 on a arch-linu named desktop by kuba Fri Dec 10
08:36:02 2010
[0]PETSC ERROR: Libraries linked
from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib
[0]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010
[0]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran
--download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1
--with-debug=no --with-cusp=1 --with-thrust=1
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI
processes
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html
[0]PETSC ERROR: [1]PETSC ERROR:
------------------------------------------------------------------------
[1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[1]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[1]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrindor
see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS
X to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[1]PETSC ERROR: likely location of problem given in stack below
[1]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[0]PETSC ERROR: INSTEAD the line number of the start of the
function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: [0] VecCUDACopyFromGPU line 188
src/vec/vec/impls/seq/seqcuda/veccuda.cu
[0]PETSC ERROR: [0] VecGetArray line 226
src/vec/vec/impls/mpi//home/kuba/External/petsc-dev/include/private/vecimpl.h
[0]PETSC ERROR: [0] VecCreateGhostWithArray line 581
src/vec/vec/impls/mpi/pbvec.c
[0]PETSC ERROR: [0] VecCreateGhost line 661
src/vec/vec/impls/mpi/pbvec.c
[0]PETSC ERROR: [0] MatFDColoringCreate_MPIAIJ line 24
src/mat/impls/aij/mpi/fdmpiaij.c
[0]PETSC ERROR: [0] MatFDColoringCreate line 376
src/mat/matfd/fdmatrix.c
[0]PETSC ERROR: [0] DMMGSetSNES line 562 src/snes/utils/damgsnes.c
[0]PETSC ERROR: [0] DMMGSetSNESLocal_Private line 933
src/snes/utils/damgsnes.c
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision:
488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16
2010 +0100
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex19 on a arch-linu named desktop by kuba Fri Dec 10
08:36:03 2010
[0]PETSC ERROR: Libraries linked
from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib
[0]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010
[0]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran
--download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1
--with-debug=no --with-cusp=1 --with-thrust=1
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[1]PETSC ERROR: application called MPI_Abort(MPI_COMM_WORLD, 59) -
process 0
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
Note: The EXACT line numbers in the stack are not available,
[1]PETSC ERROR: INSTEAD the line number of the start of the
function
[1]PETSC ERROR: is given.
[1]PETSC ERROR: [1] VecCUDACopyFromGPU line 188
src/vec/vec/impls/seq/seqcuda/veccuda.cu
[1]PETSC ERROR: [1] VecGetArray line 226
src/vec/vec/impls/mpi//home/kuba/External/petsc-dev/include/private/vecimpl.h
[1]PETSC ERROR: [1] VecCreateGhostWithArray line 581
src/vec/vec/impls/mpi/pbvec.c
[1]PETSC ERROR: [1] VecCreateGhost line 661
src/vec/vec/impls/mpi/pbvec.c
[1]PETSC ERROR: [1] MatFDColoringCreate_MPIAIJ line 24
src/mat/impls/aij/mpi/fdmpiaij.c
[1]PETSC ERROR: [1] MatFDColoringCreate line 376
src/mat/matfd/fdmatrix.c
[1]PETSC ERROR: [1] DMMGSetSNES line 562 src/snes/utils/damgsnes.c
[1]PETSC ERROR: [1] DMMGSetSNESLocal_Private line 933
src/snes/utils/damgsnes.c
[1]PETSC ERROR: --------------------- Error Message
------------------------------------
[1]PETSC ERROR: Signal received!
[1]PETSC ERROR:
------------------------------------------------------------------------
[1]PETSC ERROR: Petsc Development HG revision:
488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16
2010 +0100
[1]PETSC ERROR: See docs/changes/index.html for recent updates.
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1]PETSC ERROR: See docs/index.html for manual pages.
[1]PETSC ERROR:
------------------------------------------------------------------------
[1]PETSC ERROR: ./ex19 on a arch-linu named desktop by kuba Fri Dec 10
08:36:03 2010
[1]PETSC ERROR: Libraries linked
from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib
[1]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010
[1]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran
--download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1
--with-debug=no --with-cusp=1 --with-thrust=1
[1]PETSC ERROR:
------------------------------------------------------------------------
[1]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
[cli_1]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)
Error running Fortran example src/snes/examples/tutorials/ex5f with 1
MPI process
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[0]PETSC ERROR: INSTEAD the line number of the start of the
function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: [0] VecCUDACopyFromGPU line 188
src/vec/vec/impls/seq/seqcuda/veccuda.cu
[0]PETSC ERROR: [0] VecGetArray line 226
src/vec/vec/interface/ftn-custom//home/kuba/External/petsc-dev/include/private/vecimpl.h
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision:
488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16
2010 +0100
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex5f on a arch-linu named desktop by kuba Fri Dec 10
08:36:09 2010
[0]PETSC ERROR: Libraries linked
from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib
[0]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010
[0]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran
--download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1
--with-debug=no --with-cusp=1 --with-thrust=1
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)
Completed test examples
Dnia 2010-12-10, pią o godzinie 00:38 +0100, Jed Brown pisze:
> On Fri, Dec 10, 2010 at 00:07, Jakub Pola <jakub.pola at gmail.com>
> wrote:
> I downloaded Petsc 3.1.0 as well as thrust 1.4.0 and cusp
> 0.2.0
>
> As I said before, you need petsc-dev for this, CUDA support is not in
> 3.1.
>
>
> http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html#Obtaining
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