PaStiX crash
Andreas Grassl
Andreas.Grassl at student.uibk.ac.at
Tue Oct 20 09:37:28 CDT 2009
Hello,
I wanted to use PaStix and have the problem, that the debugging version works
and PETSc compiled with option --with-debugging=0 gives following error:
what could be wrong?
+--------------------------------------------------------------------+
+ PaStiX : Parallel Sparse matriX package +
+--------------------------------------------------------------------+
Matrix size 7166 x 7166
Number of nonzeros 177831
+--------------------------------------------------------------------+
+ Options +
+--------------------------------------------------------------------+
Version : exported
SMP_SOPALIN : Defined
VERSION MPI : Defined
PASTIX_BUBBLE : Not defined
STATS_SOPALIN : Not defined
NAPA_SOPALIN : Defined
TEST_IRECV : Not defined
TEST_ISEND : Defined
THREAD_COMM : Not defined
THREAD_FUNNELED : Not defined
TAG : Exact Thread
FORCE_CONSO : Not defined
RECV_FANIN_OR_BLOCK : Not defined
OUT_OF_CORE : Not defined
DISTRIBUTED : Not defined
FLUIDBOX : Not defined
METIS : Not defined
INTEGER TYPE : int32_t
FLOAT TYPE : double
+--------------------------------------------------------------------+
Check : ordering OK
Check : Sort CSC OK
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.0.0, Patch 8, Fri Aug 21 14:02:12 CDT 2009
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./standalonesolver on a linux32-i named login.leo1 by c702174
Tue Oct 20 11:55:24 2009
[0]PETSC ERROR: Libraries linked from
/mnt/x4540/hpc-scratch/c702174/leo1/petsc/petsc-3.0.0-p8/linux32-intel-c-leo1/lib
[0]PETSC ERROR: Configure run at Tue Oct 20 00:39:27 2009
[0]PETSC ERROR: Configure options --with-scalar-type=real --with-debugging=0
--with-precision=double --with-shared=0 --with-mpi=1
--with-mpi-dir=/usr/site/hpc/x86_64/glibc-2.5/italy/openmpi/1.3.3/intel-11.0
--with-scalapack=1 --download-scalapack=ifneeded
--download-f-blas-lapack=ifneeded --with-blacs=1 --download-blacs=ifneeded
--with-parmetis=1 --download-parmetis=ifneeded --with-mumps=1
--download-mumps=ifneeded --with-spooles=1 --download-spooles=ifneeded
--with-superlu_dist=1 --download-superlu_dist=ifneeded --with-scotch=1
--download-scotch=ifneeded --with-pastix=1 --download-pastix=ifneeded
--with-umfpack=1 --download-umfpack=ifneeded PETSC_ARCH=linux32-intel-c-leo1
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
Cheers,
ando
--
/"\ Grassl Andreas
\ / ASCII Ribbon Campaign Uni Innsbruck Institut f. Mathematik
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