[petsc-dev] testing problems please checking them
Barry Smith
bsmith at mcs.anl.gov
Wed Nov 14 20:57:03 CST 2012
There are a bunch of nightly tests with errors. Please check through them and see which ones you are guilty of and fix.
Thanks
Barry
ifbcgs and tfibcgs are in test examples but don't appear to be types in KSP??
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing external package needed for type:
> see http://www.mcs.anl.gov/petsc/documentation/installation.html#external!
> [0]PETSC ERROR: Unable to find requested KSP type ifbcgs!
> [0]PETSC ERROR: KSPSetType() line 659 in /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcreate.c
> [0]PETSC ERROR: KSPSetFromOptions() line 356 in /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcl.c
> [0]PETSC ERROR: main() line 203 in src/ksp/ksp/examples/tests/ex39.c
> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0
/Users/barrysmith/Src/petsc-dev/src/ksp/ksp/examples/tests
Possible problem with with ex39_1, diffs above
> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing external package needed for type:
> see http://www.mcs.anl.gov/petsc/documentation/installation.html#external!
> [0]PETSC ERROR: Unable to find requested KSP type tfibcgs!
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Development HG revision: 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 -0700
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex2 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:17:57 2012
> [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib
> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012
> [0]PETSC ERROR: Configure options --download-blacs --download-cmake --download-fftw --download-hypre --download-libyaml --download-metis --download-ml --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-triangle --download-yaml --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java --with-openmp --with-pthreadclasses --with-server --with-shared-libraries PETSC_ARCH=arch-gnu
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: KSPSetType() line 659 in /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcreate.c
> [0]PETSC ERROR: KSPSetFromOptions() line 356 in /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcl.c
> [0]PETSC ERROR: main() line 192 in src/ksp/ksp/examples/tutorials/ex2.c
> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0
/Users/barrysmith/Src/petsc-dev/src/ksp/ksp/examples/tutorials
Possible problem with with ex2_tfibcgs_2, diffs above
=======================================================================================================================
Broken MatPtAP
> [0]PETSC ERROR: --------------------- Error Message ------------------------------------
> [0]PETSC ERROR: Arguments are incompatible!
> [0]PETSC ERROR: MatPtAP requires A, mpiaij, to be compatible with P, mpimaij!
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Development HG revision: 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 -0700
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex43 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:18:10 2012
> [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib
> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012
> [0]PETSC ERROR: Configure options --download-blacs --download-cmake --download-fftw --download-hypre --download-libyaml --download-metis --download-ml --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-triangle --download-yaml --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java --with-openmp --with-pthreadclasses --with-server --with-shared-libraries PETSC_ARCH=arch-gnu
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: MatPtAP() line 8256 in /Users/barrysmith/Src/petsc-dev/src/mat/interface/matrix.c
> [0]PETSC ERROR: PCSetUp_MG() line 596 in /Users/barrysmith/Src/petsc-dev/src/ksp/pc/impls/mg/mg.c
> [0]PETSC ERROR: PCSetUp() line 832 in /Users/barrysmith/Src/petsc-dev/src/ksp/pc/interface/precon.c
> [0]PETSC ERROR: KSPSetUp() line 278 in /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: KSPSolve() line 402 in /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: solve_stokes_2d_coupled() line 1501 in src/ksp/ksp/examples/tutorials/ex43.c
> [0]PETSC ERROR: main() line 1620 in src/ksp/ksp/examples/tutorials/ex43.c
> application called MPI_Abort(MPI_COMM_WORLD, 75) - process 0
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 75) - process 0
/Users/barrysmith/Src/petsc-dev/src/ksp/ksp/examples/tutorials
Possible problem with with ex43_3, diffs above
=======================================================================================================================
< 1 SNES Function norm 22.8975
< 2 SNES Function norm 20.6078
< 3 SNES Function norm 18.547
< 4 SNES Function norm 16.6923
< 5 SNES Function norm 15.0231
< 6 SNES Function norm 13.5208
< 7 SNES Function norm 4.51122
< 8 SNES Function norm 2.14075
< 9 SNES Function norm 1.67019e-05
< 10 SNES Function norm 9.632e-11
< number of Newton iterations = 10; result = CONVERGED_FNORM_RELATIVE
< errors: av |u-uexact| = 1.287e-03
< |u-uexact|_inf = 7.882e-03
---
> number of Newton iterations = 0; result = DIVERGED_LINE_SEARCH
> errors: av |u-uexact| = 7.850e+00
> |u-uexact|_inf = 1.191e+02
/Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials
Possible problem with with ex9_1, diffs above
=======================================================================================================================
Memory leak in fieldsplit
> [ 0]16 bytes PetscThreadCommInitialize() line 1232 in /Users/barrysmith/Src/petsc-dev/src/sys/threadcomm/interface/threadcomm.c
> [0] PetscThreadCommInitializePackage() line 51 in /Users/barrysmith/Src/petsc-dev/src/sys/threadcomm/interface/dlregisthreadcomm.c
> [0] PetscInitialize() line 651 in /Users/barrysmith/Src/petsc-dev/src/sys/objects/pinit.c
> [ 0]160 bytes PetscThreadCommInitialize() line 1228 in /Users/barrysmith/Src/petsc-dev/src/sys/threadcomm/interfac/Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials
Possible problem with with ex19_fieldsplit_4, diffs above
=======================================================================================================================
Broken stuff in FAS
[0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR: INSTEAD the line number of the start of the function
> [0]PETSC ERROR: is given.
> [0]PETSC ERROR: [0] DMSNESGetContextWrite line 239 /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c
> [0]PETSC ERROR: [0] DMSNESSetJacobian line 525 /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c
> [0]PETSC ERROR: [0] SNESSetJacobian line 2348 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESSetUpMatrices line 429 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESSetUp_LS line 300 /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c
> [0]PETSC ERROR: [0] SNESSetUp line 2449 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESFASDownSmooth_Private line 416 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c
> [0]PETSC ERROR: [0] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: --------------------- Error Message ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Development HG revision: 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 -0700
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex19 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:20:52 2012
> [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib
> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012
> [0]PETSC ERROR: Configure options --download-blacs --download-cmake --download-fftw --download-hypre --download-libyaml --download-metis --download-ml --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-triangle --download-yaml --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java --with-openmp --with-pthreadclasses --with-server --with-shared-libraries PETSC_ARCH=arch-gnu
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
/Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials
Possible problem with ex19_fas, diffs above
=======================================================================================================================
Error in SNES example bad crash
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
> [1]PETSC ERROR: ------------------------------------------------------------------------
> [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
> [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------
> [1]PETSC ERROR: likely location of problem given in stack below
> [1]PETSC ERROR: --------------------- Stack Frames ------------------------------------
> [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [1]PETSC ERROR: INSTEAD the line number of the start of the function
> [1]PETSC ERROR: is given.
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR: INSTEAD the line number of the start of the function
> [0]PETSC ERROR: [1]PETSC ERROR: [1] ComputeFunction line 155 src/snes/examples/tutorials/ex22.c
> [1]PETSC ERROR: [1] SNES user function line 0 unknownunknown
> [1]PETSC ERROR: [1] SNESComputeFunction line 1928 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [1]PETSC ERROR: [1] SNESSolve_LS line 144 /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c
> [1]PETSC ERROR: is given.
> [0]PETSC ERROR: [0] ComputeFunction line 155 src/snes/examples/tutorials/ex22.c
> [0]PETSC ERROR: [0] SNES user function line 0 unknownunknown
> [0]PETSC ERROR: [0] SNESComputeFunction line 1928 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: [1] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0] SNESSolve_LS line 144 /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c
> [0]PETSC ERROR: [0] SNESSolve line 3535 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [1]PETSC ERROR: --------------------- Error Message ------------------------------------
> [1]PETSC ERROR: Signal received!
> [1]PETSC ERROR: ------------------------------------------------------------------------
> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Development HG revision: 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 -0700
> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [1]PETSC ERROR: See docs/index.html for manual pages.
> [1]PETSC ERROR: ------------------------------------------------------------------------
> Petsc Development HG revision: 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 -0700
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: [1]PETSC ERROR: ./ex22 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:20:56 2012
> [1]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib
> [1]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012
> [1]PETSC ERROR: Configure options --download-blacs --download-cmake --download-fftw --download-hypre --download-libyaml --download-metis --download-ml --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-triangle --download-yaml --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java --with-openmp --with-pthreadclasses --with-server --with-shared-libraries PETSC_ARCH=arch-gnu
> [1]PETSC ERROR: ------------------------------------------------------------------------
> ./ex22 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:20:56 2012
> [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib
> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012
> [0]PETSC ERROR: Configure options --download-blacs --download-cmake --download-fftw --download-hypre --download-libyaml --download-metis --download-ml --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-triangle --download-yaml --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java --with-openmp --with-pthreadclasses --with-server --with-shared-libraries PETSC_ARCH=arch-gnu
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
> [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> [cli_1]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
/Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials
Possible problem with with ex22_1, diffs above
=======================================================================================================================
/Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc -o ex30.o -c -PIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -fopenmp -I/Users/barrysmith/Src/petsc-dev/include -I/Users/barrysmith/Src/petsc-dev/arch-gnu/include -I/usr/local/include/libAfterImage/ -I/opt/X11/include -I/Users/barrysmith/Src/ams-dev/include -I/opt/local/include -D__INSDIR__=src/snes/examples/tutorials/ ex30.c
ex30.c: In function ‘XMomentumResidual’:
ex30.c:507: error: expected expression before ‘PetscScalar’
ex30.c:519: error: expected expression before ‘PetscScalar’
ex30.c:519: error: too few arguments to function ‘Viscosity’
ex30.c:520: error: expected expression before ‘PetscScalar’
ex30.c:520: error: too few arguments to function ‘Viscosity’
ex30.c: In function ‘ZMomentumResidual’:
ex30.c:565: error: expected expression before ‘PetscScalar’
ex30.c:567: error: expected expression before ‘PetscScalar’
ex30.c: In function ‘XNormalStress’:
ex30.c:734: error: expected expression before ‘PetscScalar’
ex30.c:734: error: too few arguments to function ‘Viscosity’
ex30.c:742: error: expected expression before ‘PetscScalar’
ex30.c: In function ‘ZNormalStress’:
ex30.c:775: error: expected expression before ‘PetscScalar’
ex30.c:775: error: too few arguments to function ‘Viscosity’
ex30.c:781: error: expected expression before ‘PetscScalar’
make[7]: [ex30.o] Error 1 (ignored)
/Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc -fopenmp -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -PIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -fopenmp -o ex30 ex30.o -L/Users/barrysmith/Src/petsc-dev/arch-gnu/lib -L/Users/barrysmith/Src/petsc-dev/arch-gnu/lib -lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lblacs -lHYPRE -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lmpichcxx -lstdc++ -lml -lmpichcxx -lstdc++ -lsuperlu_4.3 -lsuperlu_dist_3.1 -llapack -lblas -L/usr/local/include/libAfterImage/../../lib -lAfterImage -ltriangle -L/opt/X11/lib -lX11 -L/Users/barrysmith/Src/ams-dev/lib -lamspub -lparmetis -lmetis -lfftw3_mpi -lfftw3 -lptesmumps -lptscotch -lptscotcherr -lpthread -lyaml -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin10.7.0/4.6.0 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -lmpichcxx -lstdc++ -lm -lz -lz -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -ldl
i686-apple-darwin11-llvm-gcc-4.2: ex30.o: No such file or directory
make[7]: [ex30] Error 1 (ignored)
/bin/rm -f ex30.o
1,123c1
=======================================================================================================================
> [0]PETSC ERROR: --------------------- Error Message ------------------------------------
> [0]PETSC ERROR: Object is in wrong state!
> [0]PETSC ERROR: Need to provide function with DMSetFunction()!
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Development HG revision: 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 -0700
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex48 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:21:08 2012
> [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib
> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012
> [0]PETSC ERROR: Configure options --download-blacs --download-cmake --download-fftw --download-hypre --download-libyaml --download-metis --download-ml --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-triangle --download-yaml --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java --with-openmp --with-pthreadclasses --with-server --with-shared-libraries PETSC_ARCH=arch-gnu
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: DMComputeFunction() line 2543 in /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c
> [0]PETSC ERROR: SNESDefaultComputeFunction_DMLegacy() line 644 in /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c
> [0]PETSC ERROR: SNESComputeFunction() line 1945 in /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: SNESSolve_LS() line 162 in /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c
> [0]PETSC ERROR: SNESSolve() line 3580 in /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: main() line 1555 in src/snes/examples/tutorials/ex48.c
> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
/Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials
Possible problem with ex48_2, diffs above
=========================================
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex48 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:21:12 2012
> [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib
> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012
> [0]PETSC ERROR: Configure options --download-blacs --download-cmake --download-fftw --download-hypre --download-libyaml --download-metis --download-ml --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-triangle --download-yaml --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java --with-openmp --with-pthreadclasses --with-server --with-shared-libraries PETSC_ARCH=arch-gnu
> [0]PETSC ERROR: ------------------------------------------------------------------------
> [0]PETSC ERROR: DMComputeFunction() line 2543 in /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c
> [0]PETSC ERROR: SNESDefaultComputeFunction_DMLegacy() line 644 in /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c
> [0]PETSC ERROR: SNESComputeFunction() line 1945 in /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: SNESSolve_LS() line 162 in /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c
> [0]PETSC ERROR: SNESSolve() line 3580 in /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c
> [0]PETSC ERROR: main() line 1555 in src/snes/examples/tutorials/ex48.c
> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
/Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials
Possible problem with ex48_4, diffs above
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