From nek5000-users at lists.mcs.anl.gov Thu Oct 1 08:59:02 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 1 Oct 2015 15:59:02 +0200 Subject: [Nek5000-users] Elsasser subroutines in the MHD solver Message-ID: Hi all, I have a question regarding the implementation of the MHD solver. The manual and the comment in the subroutine elsasserh (in induct.f) says that Nek uses the Elsasser formulation to solve for u and B simultanously. A quick 'grep -i'elsasser' *' in the source directory tells me that there are subroutines to convert between u and B and the Elsasser variables. However, it seems to me that only one of these is ever called (in the cfl_check routine). Shouldn't there be many more calls, e.g. for converting the starting field, boundary conditions, writing output...? I have no experience so far with the Elsasser formulation, so I am a bit lost concerning what is happening in the code. Best regards, Jan From nek5000-users at lists.mcs.anl.gov Thu Oct 8 04:05:48 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 8 Oct 2015 10:05:48 +0100 Subject: [Nek5000-users] Input data for a large simulation In-Reply-To: References: Message-ID: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi Neks, We are looking for the input data for a large Nek5000 simulation. At the moment we have been using just the examples provided, but we would like to run, test and optimize Nek5000 with a much larger simulation. Could you please point me to the right place to obtain such data? Thank you all -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.14 (GNU/Linux) iQEcBAEBAgAGBQJWFjHsAAoJEIhcgrtekvd+mBsH/ioeNRLdOzYHci/goJxhV16h Lo4QZ0FaylnjcZI0JFrwNRu9FjJac185EQtmlW/Lp/LxDnV0Aei0wtEBZREp9r3a M8TD+gI9MnD/7ImfH/0gHL3ELhNEo6XATe3QOn7UsBNZYnjlXRU+ok670dQqPhBR AlZIAIkRWAIjKeMm+CPz5dIn/KIE9VrCLYcTifIZhoMdUQVMOHoDL4lR+EbfgIpn Es2mVVAUsUf0P0cx2ZytYMqq27ylloNDHqrySV/55O+W0nfY08hn6WJix/secPZU QOXM4kr5/ugSkm3guXU6KGMU6CMp+v7OLz6xSR2O+Ebg+1656T5qOsdzMLeL7qE= =Nons -----END PGP SIGNATURE----- -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. From nek5000-users at lists.mcs.anl.gov Thu Oct 8 08:05:38 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 8 Oct 2015 13:05:38 +0000 Subject: [Nek5000-users] visualization with Paraview Message-ID: Does anybody know why Paraview gives errors when reading .nek5000 plot files? Thanks, -emilian From nek5000-users at lists.mcs.anl.gov Thu Oct 8 08:13:56 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 8 Oct 2015 09:13:56 -0400 Subject: [Nek5000-users] Input data for a large simulation In-Reply-To: References: Message-ID: Hi, Are you asking about a physically larger mesh? David H. On Oct 8, 2015 5:06 AM, wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > Hi Neks, > > We are looking for the input data for a large Nek5000 simulation. At > the moment we have been using just the examples provided, but we would > like to run, test and optimize Nek5000 with a much larger simulation. > Could you please point me to the right place to obtain such data? > > Thank you all > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v2.0.14 (GNU/Linux) > > iQEcBAEBAgAGBQJWFjHsAAoJEIhcgrtekvd+mBsH/ioeNRLdOzYHci/goJxhV16h > Lo4QZ0FaylnjcZI0JFrwNRu9FjJac185EQtmlW/Lp/LxDnV0Aei0wtEBZREp9r3a > M8TD+gI9MnD/7ImfH/0gHL3ELhNEo6XATe3QOn7UsBNZYnjlXRU+ok670dQqPhBR > AlZIAIkRWAIjKeMm+CPz5dIn/KIE9VrCLYcTifIZhoMdUQVMOHoDL4lR+EbfgIpn > Es2mVVAUsUf0P0cx2ZytYMqq27ylloNDHqrySV/55O+W0nfY08hn6WJix/secPZU > QOXM4kr5/ugSkm3guXU6KGMU6CMp+v7OLz6xSR2O+Ebg+1656T5qOsdzMLeL7qE= > =Nons > -----END PGP SIGNATURE----- > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Thu Oct 8 08:17:41 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 8 Oct 2015 14:17:41 +0100 Subject: [Nek5000-users] Input data for a large simulation In-Reply-To: References: Message-ID: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi David, Yes, so any input data required to run a large and computationally expensive simulation. Thanks On 08/10/15 14:13, nek5000-users at lists.mcs.anl.gov wrote: > Hi, > > Are you asking about a physically larger mesh? > > David H. On Oct 8, 2015 5:06 AM, > wrote: > > Hi Neks, > > We are looking for the input data for a large Nek5000 simulation. > At the moment we have been using just the examples provided, but we > would like to run, test and optimize Nek5000 with a much larger > simulation. Could you please point me to the right place to obtain > such data? > > Thank you all >> >> -- The University of Edinburgh is a charitable body, registered >> in Scotland, with registration number SC005336. >> >> _______________________________________________ Nek5000-users >> mailing list Nek5000-users at lists.mcs.anl.gov >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >> > > > > _______________________________________________ Nek5000-users > mailing list Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.14 (GNU/Linux) iQEcBAEBAgAGBQJWFmz1AAoJEIhcgrtekvd+kB4IAMdp1FXU9FM8dGR9xMnPI85v 9CDIvzsjdyaACnurOHMFfXQlRSZDl/icjEch09VsLmjFYiOZ4rg2JxnLrHMZOFCz lCEyfehF2lVDSGLvvtI/dMUQCvbDwrHugwQ5FmD1awadZJgPHZUbm7w1Ga+UJ+Tl EiqCMXO6rSNnGft450LrcqadO9VVltAGFq8CC6GEKdXU8eOQWz7jQHBYrASA+Gsa Zv7IpPfO72v5rX53E9qbEZzwR7b+yJYV2O6uv+Iub2vHMFNa8pk2E75NXUe3wnCo 2AxJcHclRbkmBUQM5I2mQKmGDnzSupjM/U6Ku/9y9Bzug83dponX0/OKRvkNEAU= =Salx -----END PGP SIGNATURE----- -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. From nek5000-users at lists.mcs.anl.gov Thu Oct 8 08:18:54 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 08 Oct 2015 13:18:54 +0000 Subject: [Nek5000-users] Input data for a large simulation In-Reply-To: References: Message-ID: Is this for benchmarking purposes? How large is large (total processors, total available RAM, something like that)? On Thu, Oct 8, 2015 at 8:18 AM wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > Hi David, > > Yes, so any input data required to run a large and computationally > expensive simulation. > > Thanks > > On 08/10/15 14:13, nek5000-users at lists.mcs.anl.gov wrote: > > Hi, > > > > Are you asking about a physically larger mesh? > > > > David H. On Oct 8, 2015 5:06 AM, > > wrote: > > > > Hi Neks, > > > > We are looking for the input data for a large Nek5000 simulation. > > At the moment we have been using just the examples provided, but we > > would like to run, test and optimize Nek5000 with a much larger > > simulation. Could you please point me to the right place to obtain > > such data? > > > > Thank you all > >> > >> -- The University of Edinburgh is a charitable body, registered > >> in Scotland, with registration number SC005336. > >> > >> _______________________________________________ Nek5000-users > >> mailing list Nek5000-users at lists.mcs.anl.gov > >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > >> > > > > > > > > _______________________________________________ Nek5000-users > > mailing list Nek5000-users at lists.mcs.anl.gov > > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > > > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v2.0.14 (GNU/Linux) > > iQEcBAEBAgAGBQJWFmz1AAoJEIhcgrtekvd+kB4IAMdp1FXU9FM8dGR9xMnPI85v > 9CDIvzsjdyaACnurOHMFfXQlRSZDl/icjEch09VsLmjFYiOZ4rg2JxnLrHMZOFCz > lCEyfehF2lVDSGLvvtI/dMUQCvbDwrHugwQ5FmD1awadZJgPHZUbm7w1Ga+UJ+Tl > EiqCMXO6rSNnGft450LrcqadO9VVltAGFq8CC6GEKdXU8eOQWz7jQHBYrASA+Gsa > Zv7IpPfO72v5rX53E9qbEZzwR7b+yJYV2O6uv+Iub2vHMFNa8pk2E75NXUe3wnCo > 2AxJcHclRbkmBUQM5I2mQKmGDnzSupjM/U6Ku/9y9Bzug83dponX0/OKRvkNEAU= > =Salx > -----END PGP SIGNATURE----- > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Thu Oct 8 09:31:01 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 8 Oct 2015 15:31:01 +0100 Subject: [Nek5000-users] Input data for a large simulation In-Reply-To: References: Message-ID: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Yes it is. ~50k processors, 64GB per node On 08/10/15 14:18, nek5000-users at lists.mcs.anl.gov wrote: > Is this for benchmarking purposes? How large is large (total > processors, total available RAM, something like that)? > > On Thu, Oct 8, 2015 at 8:18 AM > wrote: > > Hi David, > > Yes, so any input data required to run a large and computationally > expensive simulation. > > Thanks > > On 08/10/15 14:13, nek5000-users at lists.mcs.anl.gov wrote: >>>> Hi, >>>> >>>> Are you asking about a physically larger mesh? >>>> >>>> David H. On Oct 8, 2015 5:06 AM, >>>> wrote: >>>> >>>> Hi Neks, >>>> >>>> We are looking for the input data for a large Nek5000 >>>> simulation. At the moment we have been using just the >>>> examples provided, but we would like to run, test and >>>> optimize Nek5000 with a much larger simulation. Could you >>>> please point me to the right place to obtain such data? >>>> >>>> Thank you all >>>>> >>>>> -- The University of Edinburgh is a charitable body, >>>>> registered in Scotland, with registration number SC005336. >>>>> >>>>> _______________________________________________ >>>>> Nek5000-users mailing list Nek5000-users at lists.mcs.anl.gov >>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >>>>> >>>> >>>> >>>> >>>> _______________________________________________ >>>> Nek5000-users mailing list Nek5000-users at lists.mcs.anl.gov >>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >>>> >> >> -- The University of Edinburgh is a charitable body, registered >> in Scotland, with registration number SC005336. >> >> _______________________________________________ Nek5000-users >> mailing list Nek5000-users at lists.mcs.anl.gov >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >> > > > > _______________________________________________ Nek5000-users > mailing list Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.14 (GNU/Linux) iQEcBAEBAgAGBQJWFn4kAAoJEIhcgrtekvd+xkUIAMffrsMnBRi3N57ms7bTj4N1 TD7DbzHdI9hCPlfCuCs3e54wA/31Kgr6ZkC1iaedPBPQ+15QoV+zm7Lsb4r5RcxR jPILVyRjiQZH79NSKayuog2OWMB1tIHeOr0cjfZpnw6S7wvHtBY9euVRzBgTXIjK OsXgMxfuzp++yIfrS0mLVzv8XO0xb4lF9lDrFHRspo5YrGHcRzp95i0YAypXVOg1 2YpkLmFW8gpNZ/1nCDJaFzFTClEytdp6HZhdBK6L8sb5Zah1bhh6+cd8yOCT1wWC dICyEpwvSqwnvD74oMJBQ+0eAoD0mH8ufQTw36TCjQ6VYmP3GBWzIMVwYyssROk= =0STW -----END PGP SIGNATURE----- -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. From nek5000-users at lists.mcs.anl.gov Thu Oct 8 09:42:13 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 08 Oct 2015 16:42:13 +0200 Subject: [Nek5000-users] fluid dynamic repository Message-ID: Hi Neks, do you know any fluid dynamics repository where I can find transitional flows (or quasi-periodic)? I'm interested in testing some post-processing codes... If there is any repository from Nek5000 data it would be fantastic... Regards, SL From nek5000-users at lists.mcs.anl.gov Thu Oct 8 11:34:19 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 08 Oct 2015 16:34:19 +0000 Subject: [Nek5000-users] Input data for a large simulation In-Reply-To: References: Message-ID: You could try this one: https://github.com/maxhutch/alcc-2015-benchmarks I have performance numbers for it on Mira at a couple scales. It is very easy to re-size. On Thu, Oct 8, 2015 at 9:31 AM wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > Yes it is. ~50k processors, 64GB per node > > On 08/10/15 14:18, nek5000-users at lists.mcs.anl.gov wrote: > > Is this for benchmarking purposes? How large is large (total > > processors, total available RAM, something like that)? > > > > On Thu, Oct 8, 2015 at 8:18 AM > > wrote: > > > > Hi David, > > > > Yes, so any input data required to run a large and computationally > > expensive simulation. > > > > Thanks > > > > On 08/10/15 14:13, nek5000-users at lists.mcs.anl.gov wrote: > >>>> Hi, > >>>> > >>>> Are you asking about a physically larger mesh? > >>>> > >>>> David H. On Oct 8, 2015 5:06 AM, > >>>> wrote: > >>>> > >>>> Hi Neks, > >>>> > >>>> We are looking for the input data for a large Nek5000 > >>>> simulation. At the moment we have been using just the > >>>> examples provided, but we would like to run, test and > >>>> optimize Nek5000 with a much larger simulation. Could you > >>>> please point me to the right place to obtain such data? > >>>> > >>>> Thank you all > >>>>> > >>>>> -- The University of Edinburgh is a charitable body, > >>>>> registered in Scotland, with registration number SC005336. > >>>>> > >>>>> _______________________________________________ > >>>>> Nek5000-users mailing list Nek5000-users at lists.mcs.anl.gov > >>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > >>>>> > >>>> > >>>> > >>>> > >>>> _______________________________________________ > >>>> Nek5000-users mailing list Nek5000-users at lists.mcs.anl.gov > >>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > >>>> > >> > >> -- The University of Edinburgh is a charitable body, registered > >> in Scotland, with registration number SC005336. > >> > >> _______________________________________________ Nek5000-users > >> mailing list Nek5000-users at lists.mcs.anl.gov > >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > >> > > > > > > > > _______________________________________________ Nek5000-users > > mailing list Nek5000-users at lists.mcs.anl.gov > > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > > > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v2.0.14 (GNU/Linux) > > iQEcBAEBAgAGBQJWFn4kAAoJEIhcgrtekvd+xkUIAMffrsMnBRi3N57ms7bTj4N1 > TD7DbzHdI9hCPlfCuCs3e54wA/31Kgr6ZkC1iaedPBPQ+15QoV+zm7Lsb4r5RcxR > jPILVyRjiQZH79NSKayuog2OWMB1tIHeOr0cjfZpnw6S7wvHtBY9euVRzBgTXIjK > OsXgMxfuzp++yIfrS0mLVzv8XO0xb4lF9lDrFHRspo5YrGHcRzp95i0YAypXVOg1 > 2YpkLmFW8gpNZ/1nCDJaFzFTClEytdp6HZhdBK6L8sb5Zah1bhh6+cd8yOCT1wWC > dICyEpwvSqwnvD74oMJBQ+0eAoD0mH8ufQTw36TCjQ6VYmP3GBWzIMVwYyssROk= > =0STW > -----END PGP SIGNATURE----- > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Sat Oct 10 14:12:17 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Sat, 10 Oct 2015 12:12:17 -0700 Subject: [Nek5000-users] visualization with Paraview In-Reply-To: References: Message-ID: Hi emilian, you need to first read the .nek5000 files in visit and then convert them to .vtk files. You can read the .vtk files in Paraview. Best Regards, Tanmoy On Thu, Oct 8, 2015 at 6:05 AM, wrote: > Does anybody know why Paraview gives errors when reading .nek5000 plot > files? > > Thanks, > -emilian > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Mon Oct 5 23:17:38 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Mon, 5 Oct 2015 21:17:38 -0700 Subject: [Nek5000-users] Fwd: Load Imbalance error yet again. In-Reply-To: References: Message-ID: Hi all, I have a load imbalance error while trying to run the simulation. I looked up the previous instances on the mailing list but couldnt find anything obvious that was wrong. Log, usr and rea files are attached. *Amitvikram Dutta* *MASc Student* *Graduate Research Assistant | Okanagan CFD Laboratory* *Solidification** Processing and Simulation Lab* *School of Engineering* *University of British Columbia | Okanagan Campus* -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: naca0018_final.log.4 Type: application/octet-stream Size: 13109 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: naca0018_final.usr Type: application/octet-stream Size: 5942 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: naca0018_final.rea Type: application/octet-stream Size: 3670701 bytes Desc: not available URL: From nek5000-users at lists.mcs.anl.gov Tue Oct 6 06:54:11 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Tue, 6 Oct 2015 13:54:11 +0200 Subject: [Nek5000-users] Curved edges Message-ID: Hi all I have some questions regarding curved edges in nek. Is there any way I could create edges in a 3D element that are curved as a circle? As far as i can tell the 'c'-option does not allow you to specify the plane in which the circle should be, and the 's'-option requires your entire element to be part of a sphere. Are my statements correct? The 'm'-option is what I have used so far, but the edge is then curved as a polynomial of degree 2, and I would like to know if it could be approximated with polynomials of higher degree. Thanks Magnus Rud -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Sat Oct 10 19:23:20 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Sun, 11 Oct 2015 00:23:20 +0000 Subject: [Nek5000-users] visualization with Paraview In-Reply-To: References: Message-ID: Hello Tanmoy, I tried to avoid using Visit. Paraview has a nek reader but it gives errors. Thanks, -emilian From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Saturday, October 10, 2015 3:12 PM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] visualization with Paraview Hi emilian, you need to first read the .nek5000 files in visit and then convert them to .vtk files. You can read the .vtk files in Paraview. Best Regards, Tanmoy On Thu, Oct 8, 2015 at 6:05 AM, > wrote: Does anybody know why Paraview gives errors when reading .nek5000 plot files? Thanks, -emilian _______________________________________________ Nek5000-users mailing list Nek5000-users at lists.mcs.anl.gov https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Mon Oct 12 13:04:43 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Mon, 12 Oct 2015 14:04:43 -0400 Subject: [Nek5000-users] Constant Properties Settings Message-ID: Hi All, Can someone give me a sanity check; I'm running a 3-D, fluid-only, NS simulation using true dimensions in my grid (meters); air is the fluid; I want to use constant properties. I'm using the following: ****** PARAMETERS ***** 2.610000 NEKTON VERSION 3 DIMENSIONAL RUN 103 PARAMETERS FOLLOW 1.205 p1 DENSITY .00001511 p2 VISCOS 0. 0. 0. 0. 0. p7 RHOCP 0. p8 CONDUCT 0. For my conditions, I'm taking air density at 1.205 kg/m3; kinematic viscosity at 1.511E-5 m2/s. I'm leaving Cp and k at zero since I have no energy equation. Am I missing anything? Just wanted to be sure that I'm running in dimensional mode with all values in the right place... Thanks, Murph -- Murphy Leo O'Dea PhD Student Oakland University mlodea at oakland.edu From nek5000-users at lists.mcs.anl.gov Thu Oct 15 16:47:27 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 15 Oct 2015 21:47:27 +0000 Subject: [Nek5000-users] exo mesh to Nek mesh Message-ID: Hello, Is MOAB the only tool to convert EXO (Exodus) meshes to be read by Nek? Is it possible to do it with PRENEK? Thanks, -emilian -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 16 10:00:37 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 16 Oct 2015 15:00:37 +0000 (UTC) Subject: [Nek5000-users] exo mesh to Nek mesh In-Reply-To: <11208c2372de409191bbde27105d9d35@LUCKMAN.anl.gov> References: <11208c2372de409191bbde27105d9d35@LUCKMAN.anl.gov> Message-ID: AFAIK, it is only tool to read and run Nek5000 with external mesh formats.?Let me know if you have questions about MOAB/Nek.?? Rajeev Jain Software Development Specialist MCS, Argonne National Laboratory 1134, Bldg 240,?Chicago IL USA 60439 O:?630-252-3176?Gmail: rajeeja? GVoice 312-RAJ-EEV0?jain at mcs.anl.gov From: "nek5000-users at lists.mcs.anl.gov" To: "nek5000-users at lists.mcs.anl.gov" Sent: Thursday, October 15, 2015 4:47 PM Subject: [Nek5000-users] exo mesh to Nek mesh Hello, ? Is MOAB the only tool to convert EXO (Exodus) meshes to be read by Nek? Is it possible to do it with PRENEK? ? Thanks, -emilian ? -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 16 10:32:19 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 16 Oct 2015 15:32:19 +0000 Subject: [Nek5000-users] exo mesh to Nek mesh In-Reply-To: References: <11208c2372de409191bbde27105d9d35@LUCKMAN.anl.gov> Message-ID: What is AFAIK, part of MOAB? Thanks, -emilian From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Friday, October 16, 2015 11:01 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] exo mesh to Nek mesh AFAIK, it is only tool to read and run Nek5000 with external mesh formats. Let me know if you have questions about MOAB/Nek. Rajeev Jain Software Development Specialist MCS, Argonne National Laboratory 1134, Bldg 240, Chicago IL USA 60439 O: 630-252-3176 Gmail: rajeeja GVoice 312-RAJ-EEV0 jain at mcs.anl.gov ________________________________ From: "nek5000-users at lists.mcs.anl.gov" > To: "nek5000-users at lists.mcs.anl.gov" > Sent: Thursday, October 15, 2015 4:47 PM Subject: [Nek5000-users] exo mesh to Nek mesh Hello, Is MOAB the only tool to convert EXO (Exodus) meshes to be read by Nek? Is it possible to do it with PRENEK? Thanks, -emilian -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 16 10:53:50 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 16 Oct 2015 15:53:50 +0000 (UTC) Subject: [Nek5000-users] exo mesh to Nek mesh In-Reply-To: <820de037cd444cf7af7aac3db3f7653f@GEORGE.anl.gov> References: <820de037cd444cf7af7aac3db3f7653f@GEORGE.anl.gov> Message-ID: AFAIK is a part of urban dictionary available at Barnes and Noble :)have a nice weekend! Rajeev? From: "nek5000-users at lists.mcs.anl.gov" To: "nek5000-users at lists.mcs.anl.gov" Sent: Friday, October 16, 2015 10:32 AM Subject: Re: [Nek5000-users] exo mesh to Nek mesh What is AFAIK, part of MOAB? ? Thanks, -emilian ? From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov]On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Friday, October 16, 2015 11:01 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] exo mesh to Nek mesh ? AFAIK, it is only tool to read and run Nek5000 with external mesh formats.? Let me know if you have questions about MOAB/Nek. ? ? Rajeev Jain Software Development Specialist MCS, Argonne National Laboratory 1134, Bldg 240,?Chicago IL USA 60439 O:?630-252-3176?Gmail: rajeeja? GVoice 312-RAJ-EEV0?jain at mcs.anl.gov ? From: "nek5000-users at lists.mcs.anl.gov" To: "nek5000-users at lists.mcs.anl.gov" Sent: Thursday, October 15, 2015 4:47 PM Subject: [Nek5000-users] exo mesh to Nek mesh ? Hello, ? Is MOAB the only tool to convert EXO (Exodus) meshes to be read by Nek? Is it possible to do it with PRENEK? ? Thanks, -emilian ? ? -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 16 11:16:16 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 16 Oct 2015 16:16:16 +0000 Subject: [Nek5000-users] exo mesh to Nek mesh In-Reply-To: References: <820de037cd444cf7af7aac3db3f7653f@GEORGE.anl.gov> Message-ID: Thank you, it was very helpful, I learned something. It looks people are having fun on this forum. -emilian From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Friday, October 16, 2015 11:54 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] exo mesh to Nek mesh AFAIK is a part of urban dictionary available at Barnes and Noble :) have a nice weekend! Rajeev ________________________________ From: "nek5000-users at lists.mcs.anl.gov" > To: "nek5000-users at lists.mcs.anl.gov" > Sent: Friday, October 16, 2015 10:32 AM Subject: Re: [Nek5000-users] exo mesh to Nek mesh What is AFAIK, part of MOAB? Thanks, -emilian From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Friday, October 16, 2015 11:01 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] exo mesh to Nek mesh AFAIK, it is only tool to read and run Nek5000 with external mesh formats. Let me know if you have questions about MOAB/Nek. Rajeev Jain Software Development Specialist MCS, Argonne National Laboratory 1134, Bldg 240, Chicago IL USA 60439 O: 630-252-3176 Gmail: rajeeja GVoice 312-RAJ-EEV0 jain at mcs.anl.gov ________________________________ From: "nek5000-users at lists.mcs.anl.gov" > To: "nek5000-users at lists.mcs.anl.gov" > Sent: Thursday, October 15, 2015 4:47 PM Subject: [Nek5000-users] exo mesh to Nek mesh Hello, Is MOAB the only tool to convert EXO (Exodus) meshes to be read by Nek? Is it possible to do it with PRENEK? Thanks, -emilian -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Sat Oct 17 07:57:13 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Sat, 17 Oct 2015 12:57:13 +0000 Subject: [Nek5000-users] MPI IO out of usrchk routine Message-ID: Dear Neks, I am facing a problem with the MPI IO out of my usr supplied routine. In this routine I interpolate the mesh on a uniform Cartesian grid. As an output of this routine I have an array fieldout(1:npts) for each MPI task. Here is my MPI IO routine which calculates the offset and then packs the byte of the lp MPI processes together in one file ux.*** where *** is ipic. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ subroutine f_output(fieldout,ipic) include 'SIZE' include 'TOTAL' integer npts parameter (npts=1024) real fieldout(1:npts) integer*8 offset, disp ! integer iostatus(MPI_STATUS_SIZE) integer ipic, f_off, out_fh, itask integer*8 f_offset(0:np-1) character(80) outname !-----Calculation of the offset----------------------------------------- do itask=0,np-1 f_offset(itask)=itask*npts*8 enddo f_off=f_offset(nid) !-----Conversion of integer*4 to integer*8 offset=int(f_off,8) disp=0 WRITE(outname,'("ux.",I3.3)')ipic !-----Open files using the MPI handles call MPI_FILE_OPEN(nek_comm,TRIM(outname), & MPI_MODE_CREATE+MPI_MODE_WRONLY, & MPI_INFO_NULL,out_fh,ierr) !-----Setting the correct view on the MPI handles (displacement=0) call MPI_FILE_SET_VIEW(out_fh,disp,MPI_BYTE,MPI_BYTE, & 'native',MPI_INFO_NULL,ierr) !-----Write data using MPI handles call MPI_FILE_WRITE_AT(out_fh,offset,fieldout,npts,MPI_BYTE, & MPI_STATUS_IGNORE,ierr) !-----Close files call MPI_FILE_CLOSE(out_fh,ierr) return end +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ I got the following error message: Abort(1) on node 15669 (rank 15669 in comm 1140850688): Fatal error in MPI_Info_dup: Invalid MPI_Info, error stack: MPI_Info_dup(125): MPI_Info_dup(info=0x0, newinfo=0x1e7cfdb440) failed MPI_Info_dup(66).: Invalid MPI_Info Abort(1) on node 14577 (rank 14577 in comm 1140850688): Fatal error in MPI_Info_dup: Invalid MPI_Info, error stack: MPI_Info_dup(125): MPI_Info_dup(info=0x0, newinfo=0x1e7cfdb440) failed MPI_Info_dup(66).: Invalid MPI_Info ?. and so on. I suspect that the communicator is not correctly set up. I used nek_comm and also tried MPI_COMM_WORLD. The error message is the same in both cases (see above). Does anyone have an idea how to solve this? Thanks in advance and best regards, J?rg. -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Sat Oct 17 23:01:14 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Sun, 18 Oct 2015 07:31:14 +0330 Subject: [Nek5000-users] Non-Conforming Curved Elements Message-ID: Dear Neks, Are Non-Conforming Curved elements currently supported by Nek5000? Thank you in advance. Kind regards, Bijan -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 23 09:55:47 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 23 Oct 2015 14:55:47 +0000 Subject: [Nek5000-users] MOAB partitioning Message-ID: Dear Nek/Moab users, I built Moab, but in the bin folder the 'mbpart' code is missing and I need it to partition an .h5m mesh file for Nek. Any suggestions? Thanks, -emilian -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 23 10:35:02 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 23 Oct 2015 21:05:02 +0530 Subject: [Nek5000-users] MOAB partitioning In-Reply-To: References: Message-ID: Emilian, If you want the partitioner tools, you need to configure MOAB with either metis (--with-metis=DIR) or with zoltan and optionally parmetis. Let us know if you have questions. The metis installation route is extremely straightforward and you should not encounter any issues. Vijay On Friday, October 23, 2015, wrote: > Dear Nek/Moab users, > > > > I built Moab, but in the bin folder the ?mbpart? code is missing and I > need it to partition an .h5m mesh file for Nek. > > > > Any suggestions? > > > > Thanks, > > -emilian > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 23 10:56:55 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 23 Oct 2015 15:56:55 +0000 Subject: [Nek5000-users] MOAB partitioning In-Reply-To: References: Message-ID: Thanks Vijay, however the option ??with-metis? does not seem to exist, please advice. -emilian From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Friday, October 23, 2015 11:35 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] MOAB partitioning Emilian, If you want the partitioner tools, you need to configure MOAB with either metis (--with-metis=DIR) or with zoltan and optionally parmetis. Let us know if you have questions. The metis installation route is extremely straightforward and you should not encounter any issues. Vijay On Friday, October 23, 2015, > wrote: Dear Nek/Moab users, I built Moab, but in the bin folder the ?mbpart? code is missing and I need it to partition an .h5m mesh file for Nek. Any suggestions? Thanks, -emilian -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 23 11:23:52 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 23 Oct 2015 21:53:52 +0530 Subject: [Nek5000-users] MOAB partitioning In-Reply-To: References: Message-ID: What version of MOAB are you using ? It should be available with the last MOAB 4.8.2 release [1] I think. Let us know if you have problems. Vijay [1] http://ftp.mcs.anl.gov/pub/fathom/moab-4.8.2.tar.gz On Friday, October 23, 2015, wrote: > Thanks Vijay, however the option ??with-metis? does not seem to exist, > please advice. > > > > > > -emilian > > > > *From:* nek5000-users-bounces at lists.mcs.anl.gov > > [mailto:nek5000-users-bounces at lists.mcs.anl.gov > ] > *On Behalf Of *nek5000-users at lists.mcs.anl.gov > > *Sent:* Friday, October 23, 2015 11:35 AM > *To:* nek5000-users at lists.mcs.anl.gov > > *Subject:* Re: [Nek5000-users] MOAB partitioning > > > > Emilian, > > > > If you want the partitioner tools, you need to configure MOAB with either > metis (--with-metis=DIR) or with zoltan and optionally parmetis. Let us > know if you have questions. The metis installation route is extremely > straightforward and you should not encounter any issues. > > > > Vijay > > On Friday, October 23, 2015, > wrote: > > Dear Nek/Moab users, > > > > I built Moab, but in the bin folder the ?mbpart? code is missing and I > need it to partition an .h5m mesh file for Nek. > > > > Any suggestions? > > > > Thanks, > > -emilian > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 23 18:01:12 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 23 Oct 2015 16:01:12 -0700 Subject: [Nek5000-users] Limits on Buffer for Writing Binary Data Message-ID: Neks, I have been working on routines to dump out interpolated data from Nek to binary files that can be read in VisIt. The data I'm outputting is designed to cover any subdomain inside the simulation and at any resolution (typically much higher than Nelm*lx1^3). I have found that when I try to dump too much data at once through a modified version of out_buff() and byte_write() it can cause an error and kill my program. I am assuming there must be some sort of buffer limit on how much data can be written at once, but I haven't been able to determine what it is specifically. It seems to be a function of lx1 and lelt though. Anyone know what the limit is/what is causing this error? Thanks, -- Phil S. -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Mon Oct 26 10:45:04 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Mon, 26 Oct 2015 15:45:04 +0000 Subject: [Nek5000-users] MOAB partitioning In-Reply-To: References: Message-ID: Vijay, I downloaded moab-4.8.2 and configured and then ran ?make?, but am getting errors from missing ?mpi.h? and metis.h, perhaps the configuration is not OK? Thanks, -emilian From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Friday, October 23, 2015 12:24 PM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] MOAB partitioning What version of MOAB are you using ? It should be available with the last MOAB 4.8.2 release [1] I think. Let us know if you have problems. Vijay [1] http://ftp.mcs.anl.gov/pub/fathom/moab-4.8.2.tar.gz On Friday, October 23, 2015, > wrote: Thanks Vijay, however the option ??with-metis? does not seem to exist, please advice. -emilian From: nek5000-users-bounces at lists.mcs.anl.gov [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of nek5000-users at lists.mcs.anl.gov Sent: Friday, October 23, 2015 11:35 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] MOAB partitioning Emilian, If you want the partitioner tools, you need to configure MOAB with either metis (--with-metis=DIR) or with zoltan and optionally parmetis. Let us know if you have questions. The metis installation route is extremely straightforward and you should not encounter any issues. Vijay On Friday, October 23, 2015, > wrote: Dear Nek/Moab users, I built Moab, but in the bin folder the ?mbpart? code is missing and I need it to partition an .h5m mesh file for Nek. Any suggestions? Thanks, -emilian -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Mon Oct 26 15:12:45 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Mon, 26 Oct 2015 16:12:45 -0400 Subject: [Nek5000-users] new to nek5000 Message-ID: hey I am extremely new to nek5000 I am trying to solve the examples that are already present. If I just want to compile the already existing files, what are the steps? This may seem lame but cant help it..sry AVR -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Tue Oct 27 04:49:52 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Tue, 27 Oct 2015 10:49:52 +0100 Subject: [Nek5000-users] new to nek5000 In-Reply-To: References: Message-ID: Hi AVR, 1) Copy 'makenek' file from the /trunk/nek folder to the example folder 2) Copy 'nekbmpi' file from /trunk/tools folder 3) Change the path of the fortran mpi compiler 4) just do ' ./makenek clean' 5) ./makenek 6) ./nekbmpi For detailed info look into the nek manual Best, KS On 26/10/2015 21:12, nek5000-users at lists.mcs.anl.gov wrote: > hey I am extremely new to nek5000 > I am trying to solve the examples that are already present. > If I just want to compile the already existing files, what are the steps? > This may seem lame but cant help it..sry > AVR > > > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Tue Oct 27 06:33:07 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Tue, 27 Oct 2015 14:33:07 +0300 Subject: [Nek5000-users] output through .rea and through usrchk Message-ID: Dear neks, Strange thing happend to a simulation where I made "standart" output through .rea file, i.e. -0.010000E-01 p012 DT 0.00000 p013 IOCOMM 0.50000 p014 IOTIME and at the same time I need scalar gradients, so I've put to usrchk: il_hptsout=-0.5/param(12) if ((istep.gt.0).and.(mod(istep,il_hptsout).eq.0)) then call gradm1(dtdx,dtdy,dtdz,t) call outpost(dtdx,dtdy,dtdz,pr,t,'gdt') endif The strange thing that gdt* (from usrchk) files are saved as should should be, but "standart" CASE0.f* were saved onli partially, below is 'ls -rt' of the case directory. Why whould that happen? may it be cluster issue? (file sizes are not small ~530mb) -rw-rw-r-- 1 35K Oct 15 02:52 compiler.out -rw-rw-r-- 1 99 Oct 15 02:55 SESSION.NAME -rw-rw-r-- 1 52 Oct 15 02:55 lognekbmpi.txt -rw-rw-r-- 1 353M Oct 15 03:54 gdtI0.f00001 -rw-rw-r-- 1 353M Oct 15 04:51 gdtI0.f00002 -rw-rw-r-- 1 353M Oct 15 05:29 gdtI0.f00003 -rw-rw-r-- 1 529M Oct 15 05:29 I0.f00001 -rw-rw-r-- 1 353M Oct 15 06:07 gdtI0.f00004 -rw-rw-r-- 1 529M Oct 15 06:07 I0.f00002 -rw-rw-r-- 1 353M Oct 15 06:39 gdtI0.f00005 -rw-rw-r-- 1 529M Oct 15 06:39 I0.f00003 -rw-rw-r-- 1 353M Oct 15 08:23 gdtI0.f00006 -rw-rw-r-- 1 529M Oct 15 08:23 I0.f00004 -rw-rw-r-- 1 353M Oct 15 09:29 gdtI0.f00007 -rw-rw-r-- 1 529M Oct 15 09:29 I0.f00005 -rw-rw-r-- 1 353M Oct 15 10:11 gdtI0.f00008 -rw-rw-r-- 1 529M Oct 15 10:12 I0.f00006 -rw-rw-r-- 1 353M Oct 15 10:57 gdtI0.f00009 -rw-rw-r-- 1 529M Oct 15 10:58 I0.f00007 -rw-rw-r-- 1 353M Oct 15 11:49 gdtI0.f00010 -rw-rw-r-- 1 353M Oct 15 12:41 gdtI0.f00011 -rw-rw-r-- 1 353M Oct 15 13:12 gdtI0.f00012 -rw-rw-r-- 1 353M Oct 15 13:48 gdtI0.f00013 -rw-rw-r-- 1 353M Oct 15 14:28 gdtI0.f00014 -rw-rw-r-- 1 353M Oct 15 15:01 gdtI0.f00015 -rw-rw-r-- 1 353M Oct 15 16:34 gdtI0.f00016 -rw-rw-r-- 1 353M Oct 15 18:18 gdtI0.f00017 -rw-rw-r-- 1 353M Oct 15 21:07 gdtI0.f00018 -rw-rw-r-- 1 353M Oct 15 21:13 gdtI0.f00019 -rw-rw-r-- 1 353M Oct 15 21:19 gdtI0.f00020 -rw-rw-r-- 1 529M Oct 15 21:19 I0.f00008 -rw-rw-r-- 1 353M Oct 15 21:25 gdtI0.f00021 -rw-rw-r-- 1 529M Oct 15 21:25 I0.f00009 -rw-rw-r-- 1 353M Oct 15 21:31 gdtI0.f00022 -rw-rw-r-- 1 529M Oct 15 21:31 I0.f00010 -rw-rw-r-- 1 353M Oct 15 21:37 gdtI0.f00023 -rw-rw-r-- 1 529M Oct 15 21:37 I0.f00011 -rw-rw-r-- 1 353M Oct 15 21:43 gdtI0.f00024 -rw-rw-r-- 1 529M Oct 15 21:43 I0.f00012 -rw-rw-r-- 1 353M Oct 15 21:49 gdtI0.f00025 -rw-rw-r-- 1 529M Oct 15 21:50 I0.f00013 -rw-rw-r-- 1 353M Oct 15 21:56 gdtI0.f00026 -rw-rw-r-- 1 529M Oct 15 21:56 I0.f00014 -rw-rw-r-- 1 353M Oct 15 22:02 gdtI0.f00027 -rw-rw-r-- 1 529M Oct 15 22:02 I0.f00015 -rw-rw-r-- 1 353M Oct 15 22:08 gdtI0.f00028 -rw-rw-r-- 1 529M Oct 15 22:08 I0.f00016 -rw-rw-r-- 1 353M Oct 15 22:14 gdtI0.f00029 -rw-rw-r-- 1 529M Oct 15 22:14 I0.f00017 -rw-rw-r-- 1 353M Oct 15 22:20 gdtI0.f00030 -rw-rw-r-- 1 529M Oct 15 22:20 I0.f00018 -rw-rw-r-- 1 353M Oct 15 22:26 gdtI0.f00031 -rw-rw-r-- 1 529M Oct 15 22:26 I0.f00019 -rw-rw-r-- 1 353M Oct 15 22:32 gdtI0.f00032 -rw-rw-r-- 1 529M Oct 15 22:32 I0.f00020 -rw-rw-r-- 1 353M Oct 15 22:38 gdtI0.f00033 -rw-rw-r-- 1 529M Oct 15 22:38 I0.f00021 -rw-rw-r-- 1 353M Oct 15 22:44 gdtI0.f00034 -rw-rw-r-- 1 529M Oct 15 22:44 I0.f00022 -rw-rw-r-- 1 353M Oct 15 22:50 gdtI0.f00035 -rw-rw-r-- 1 529M Oct 15 22:50 I0.f00023 -rw-rw-r-- 1 353M Oct 15 22:56 gdtI0.f00036 -rw-rw-r-- 1 529M Oct 15 22:56 I0.f00024 -rw-rw-r-- 1 353M Oct 15 23:02 gdtI0.f00037 -rw-rw-r-- 1 529M Oct 15 23:02 I0.f00025 -rw-rw-r-- 1 353M Oct 15 23:08 gdtI0.f00038 -rw-rw-r-- 1 353M Oct 15 23:14 gdtI0.f00039 -rw-rw-r-- 1 353M Oct 15 23:20 gdtI0.f00040 -rw-rw-r-- 1 353M Oct 15 23:26 gdtI0.f00041 -rw-rw-r-- 1 353M Oct 15 23:32 gdtI0.f00042 -rw-rw-r-- 1 353M Oct 15 23:38 gdtI0.f00043 -rw-rw-r-- 1 353M Oct 15 23:44 gdtI0.f00044 -rw-rw-r-- 1 353M Oct 15 23:50 gdtI0.f00045 -rw-rw-r-- 1 353M Oct 15 23:56 gdtI0.f00046 -rw-rw-r-- 1 353M Oct 16 00:01 gdtI0.f00047 -rw-rw-r-- 1 353M Oct 16 00:07 gdtI0.f00048 -rw-rw-r-- 1 353M Oct 16 00:13 gdtI0.f00049 -rw-rw-r-- 1 353M Oct 16 00:19 gdtI0.f00050 -rw-rw-r-- 1 353M Oct 16 00:25 gdtI0.f00051 -rw-rw-r-- 1 353M Oct 16 00:31 gdtI0.f00052 -rw-rw-r-- 1 353M Oct 16 00:37 gdtI0.f00053 -rw-rw-r-- 1 353M Oct 16 00:43 gdtI0.f00054 -rw-rw-r-- 1 353M Oct 16 00:49 gdtI0.f00055 -rw-rw-r-- 1 353M Oct 16 00:55 gdtI0.f00056 -rw-rw-r-- 1 353M Oct 16 01:01 gdtI0.f00057 -rw-rw-r-- 1 353M Oct 16 01:07 gdtI0.f00058 -rw-rw-r-- 1 353M Oct 16 01:13 gdtI0.f00059 -rw-rw-r-- 1 353M Oct 16 01:19 gdtI0.f00060 -rw-rw-r-- 1 353M Oct 16 01:25 gdtI0.f00061 -rw-rw-r-- 1 353M Oct 16 01:31 gdtI0.f00062 -rw-rw-r-- 1 353M Oct 16 01:36 gdtI0.f00063 -rw-rw-r-- 1 353M Oct 16 01:42 gdtI0.f00064 -rw-rw-r-- 1 353M Oct 16 01:48 gdtI0.f00065 -rw-rw-r-- 1 353M Oct 16 01:54 gdtI0.f00066 -rw-rw-r-- 1 353M Oct 16 02:00 gdtI0.f00067 -rw-rw-r-- 1 353M Oct 16 02:06 gdtI0.f00068 -rw-rw-r-- 1 353M Oct 16 02:12 gdtI0.f00069 -rw-rw-r-- 1 353M Oct 16 02:18 gdtI0.f00070 -rw-rw-r-- 1 353M Oct 16 02:24 gdtI0.f00071 -rw-rw-r-- 1 353M Oct 16 02:30 gdtI0.f00072 -rw-rw-r-- 1 353M Oct 16 02:36 gdtI0.f00073 -rw-rw-r-- 1 353M Oct 16 02:42 gdtI0.f00074 -rw-rw-r-- 1 353M Oct 16 02:48 gdtI0.f00075 -rw-rw-r-- 1 353M Oct 16 02:54 gdtI0.f00076 -rw-rw-r-- 1 353M Oct 16 03:00 gdtI0.f00077 -rw-rw-r-- 1 353M Oct 16 03:06 gdtI0.f00078 -rw-rw-r-- 1 529M Oct 16 03:06 I0.f00026 -rw-rw-r-- 1 353M Oct 16 03:12 gdtI0.f00079 -rw-rw-r-- 1 529M Oct 16 03:12 I0.f00027 -rw-rw-r-- 1 353M Oct 16 03:18 gdtI0.f00080 -rw-rw-r-- 1 529M Oct 16 03:18 I0.f00028 -rw-rw-r-- 1 353M Oct 16 03:24 gdtI0.f00081 -rw-rw-r-- 1 529M Oct 16 03:25 I0.f00029 -rw-rw-r-- 1 353M Oct 16 03:31 gdtI0.f00082 -rw-rw-r-- 1 529M Oct 16 03:31 I0.f00030 -rw-rw-r-- 1 353M Oct 16 03:37 gdtI0.f00083 -rw-rw-r-- 1 529M Oct 16 03:37 I0.f00031 -rw-rw-r-- 1 353M Oct 16 03:43 gdtI0.f00084 -rw-rw-r-- 1 529M Oct 16 03:44 I0.f00032 -rw-rw-r-- 1 353M Oct 16 03:50 gdtI0.f00085 -rw-rw-r-- 1 529M Oct 16 03:50 I0.f00033 -rw-rw-r-- 1 353M Oct 16 03:56 gdtI0.f00086 -rw-rw-r-- 1 529M Oct 16 03:56 I0.f00034 -rw-rw-r-- 1 353M Oct 16 04:02 gdtI0.f00087 -rw-rw-r-- 1 529M Oct 16 04:02 I0.f00035 -rw-rw-r-- 1 353M Oct 16 04:08 gdtI0.f00088 -rw-rw-r-- 1 529M Oct 16 04:08 I0.f00036 -rw-rw-r-- 1 353M Oct 16 04:14 gdtI0.f00089 -rw-rw-r-- 1 529M Oct 16 04:14 I0.f00037 -rw-rw-r-- 1 353M Oct 16 04:20 gdtI0.f00090 -rw-rw-r-- 1 529M Oct 16 04:21 I0.f00038 -rw-rw-r-- 1 353M Oct 16 04:27 gdtI0.f00091 -rw-rw-r-- 1 529M Oct 16 04:27 I0.f00039 -rw-rw-r-- 1 353M Oct 16 04:33 gdtI0.f00092 -rw-rw-r-- 1 529M Oct 16 04:33 I0.f00040 -rw-rw-r-- 1 353M Oct 16 04:39 gdtI0.f00093 -rw-rw-r-- 1 529M Oct 16 04:39 I0.f00041 -rw-rw-r-- 1 353M Oct 16 04:45 gdtI0.f00094 -rw-rw-r-- 1 529M Oct 16 04:45 I0.f00042 -rw-rw-r-- 1 353M Oct 16 04:51 gdtI0.f00095 -rw-rw-r-- 1 529M Oct 16 04:52 I0.f00043 -rw-rw-r-- 1 353M Oct 16 04:58 gdtI0.f00096 -rw-rw-r-- 1 529M Oct 16 04:58 I0.f00044 -rw-rw-r-- 1 353M Oct 16 05:04 gdtI0.f00097 -rw-rw-r-- 1 529M Oct 16 05:04 I0.f00045 -rw-rw-r-- 1 353M Oct 16 05:10 gdtI0.f00098 -rw-rw-r-- 1 529M Oct 16 05:11 I0.f00046 -rw-rw-r-- 1 353M Oct 16 05:17 gdtI0.f00099 -rw-rw-r-- 1 529M Oct 16 05:17 I0.f00047 -rw-rw-r-- 1 353M Oct 16 05:23 gdtI0.f00100 -rw-rw-r-- 1 529M Oct 16 05:23 I0.f00048 -rw-rw-r-- 1 353M Oct 16 05:29 gdtI0.f00101 -rw-rw-r-- 1 529M Oct 16 05:29 I0.f00049 -rw-rw-r-- 1 353M Oct 16 05:35 gdtI0.f00102 -rw-rw-r-- 1 529M Oct 16 05:35 I0.f00050 -rw-rw-r-- 1 353M Oct 16 05:41 gdtI0.f00103 -rw-rw-r-- 1 529M Oct 16 05:41 I0.f00051 -rw-rw-r-- 1 353M Oct 16 05:47 gdtI0.f00104 -rw-rw-r-- 1 529M Oct 16 05:48 I0.f00052 -rw-rw-r-- 1 353M Oct 16 05:54 gdtI0.f00105 -rw-rw-r-- 1 529M Oct 16 05:54 I0.f00053 -rw-rw-r-- 1 353M Oct 16 06:00 gdtI0.f00106 -rw-rw-r-- 1 529M Oct 16 06:00 I0.f00054 -rw-rw-r-- 1 353M Oct 16 06:06 gdtI0.f00107 -rw-rw-r-- 1 529M Oct 16 06:06 I0.f00055 -rw-rw-r-- 1 353M Oct 16 06:12 gdtI0.f00108 -rw-rw-r-- 1 529M Oct 16 06:13 I0.f00056 -rw-rw-r-- 1 353M Oct 16 06:18 gdtI0.f00109 -rw-rw-r-- 1 529M Oct 16 06:19 I0.f00057 -rw-rw-r-- 1 353M Oct 16 06:24 gdtI0.f00110 -rw-rw-r-- 1 529M Oct 16 06:25 I0.f00058 -rw-rw-r-- 1 353M Oct 16 06:31 gdtI0.f00111 -rw-rw-r-- 1 529M Oct 16 06:31 I0.f00059 -rw-rw-r-- 1 353M Oct 16 06:37 gdtI0.f00112 -rw-rw-r-- 1 529M Oct 16 06:37 I0.f00060 -rw-rw-r-- 1 353M Oct 16 06:43 gdtI0.f00113 -rw-rw-r-- 1 529M Oct 16 06:44 I0.f00061 -rw-rw-r-- 1 353M Oct 16 06:50 gdtI0.f00114 -rw-rw-r-- 1 529M Oct 16 06:50 I0.f00062 -rw-rw-r-- 1 353M Oct 16 06:56 gdtI0.f00115 -rw-rw-r-- 1 529M Oct 16 06:56 I0.f00063 -rw-rw-r-- 1 353M Oct 16 07:02 gdtI0.f00116 -rw-rw-r-- 1 529M Oct 16 07:02 I0.f00064 -rw-rw-r-- 1 353M Oct 16 07:08 gdtI0.f00117 -rw-rw-r-- 1 529M Oct 16 07:08 I0.f00065 -rw-rw-r-- 1 353M Oct 16 07:14 gdtI0.f00118 -rw-rw-r-- 1 529M Oct 16 07:14 I0.f00066 -rw-rw-r-- 1 353M Oct 16 07:20 gdtI0.f00119 -rw-rw-r-- 1 529M Oct 16 07:20 I0.f00067 -rw-rw-r-- 1 353M Oct 16 07:26 gdtI0.f00120 -rw-rw-r-- 1 529M Oct 16 07:26 I0.f00068 -rw-rw-r-- 1 353M Oct 16 07:32 gdtI0.f00121 -rw-rw-r-- 1 529M Oct 16 07:32 I0.f00069 -rw-rw-r-- 1 353M Oct 16 07:38 gdtI0.f00122 -rw-rw-r-- 1 529M Oct 16 07:38 I0.f00070 -rw-rw-r-- 1 353M Oct 16 07:44 gdtI0.f00123 -rw-rw-r-- 1 529M Oct 16 07:44 I0.f00071 -rw-rw-r-- 1 353M Oct 16 07:50 gdtI0.f00124 -rw-rw-r-- 1 529M Oct 16 07:50 I0.f00072 -rw-rw-r-- 1 353M Oct 16 07:56 gdtI0.f00125 -rw-rw-r-- 1 529M Oct 16 07:56 I0.f00073 -rw-rw-r-- 1 353M Oct 16 08:02 gdtI0.f00126 -rw-rw-r-- 1 529M Oct 16 08:02 I0.f00074 -rw-rw-r-- 1 353M Oct 16 08:08 gdtI0.f00127 -rw-rw-r-- 1 529M Oct 16 08:08 I0.f00075 -rw-rw-r-- 1 353M Oct 16 08:14 gdtI0.f00128 -rw-rw-r-- 1 529M Oct 16 08:14 I0.f00076 -rw-rw-r-- 1 353M Oct 16 08:20 gdtI0.f00129 -rw-rw-r-- 1 529M Oct 16 08:21 I0.f00077 -rw-rw-r-- 1 529M Oct 16 08:14 I0.f00076 -rw-rw-r-- 1 353M Oct 16 08:20 gdtI0.f00129 -rw-rw-r-- 1 529M Oct 16 08:21 I0.f00077 -rw-rw-r-- 1 353M Oct 16 08:26 gdtI0.f00130 -rw-rw-r-- 1 529M Oct 16 08:27 I0.f00078 -rw-rw-r-- 1 353M Oct 16 08:32 gdtI0.f00131 -rw-rw-r-- 1 529M Oct 16 08:33 I0.f00079 -rw-rw-r-- 1 353M Oct 16 08:39 gdtI0.f00132 -rw-rw-r-- 1 529M Oct 16 08:39 I0.f00080 -rw-rw-r-- 1 353M Oct 16 08:45 gdtI0.f00133 -rw-rw-r-- 1 529M Oct 16 08:45 I0.f00081 -rw-rw-r-- 1 353M Oct 16 08:51 gdtI0.f00134 -rw-rw-r-- 1 529M Oct 16 08:51 I0.f00082 -rw-rw-r-- 1 353M Oct 16 08:57 gdtI0.f00135 -rw-rw-r-- 1 529M Oct 16 08:57 I0.f00083 -rw-rw-r-- 1 353M Oct 16 09:03 gdtI0.f00136 -rw-rw-r-- 1 529M Oct 16 09:03 I0.f00084 -rw-rw-r-- 1 353M Oct 16 09:09 gdtI0.f00137 -rw-rw-r-- 1 529M Oct 16 09:09 I0.f00085 -rw-rw-r-- 1 353M Oct 16 09:15 gdtI0.f00138 -rw-rw-r-- 1 529M Oct 16 09:15 I0.f00086 -rw-rw-r-- 1 353M Oct 16 09:21 gdtI0.f00139 -rw-rw-r-- 1 529M Oct 16 09:22 I0.f00087 -rw-rw-r-- 1 353M Oct 16 09:27 gdtI0.f00140 -rw-rw-r-- 1 529M Oct 16 09:28 I0.f00088 -rw-rw-r-- 1 353M Oct 16 09:33 gdtI0.f00141 -rw-rw-r-- 1 529M Oct 16 09:34 I0.f00089 -rw-rw-r-- 1 353M Oct 16 09:40 gdtI0.f00142 -rw-rw-r-- 1 529M Oct 16 09:40 I0.f00090 -rw-rw-r-- 1 353M Oct 16 09:46 gdtI0.f00143 -rw-rw-r-- 1 529M Oct 16 09:46 I0.f00091 -rw-rw-r-- 1 353M Oct 16 09:52 gdtI0.f00144 -rw-rw-r-- 1 529M Oct 16 09:52 I0.f00092 -rw-rw-r-- 1 353M Oct 16 09:57 gdtI0.f00145 -rw-rw-r-- 1 529M Oct 16 09:58 I0.f00093 -rw-rw-r-- 1 353M Oct 16 10:03 gdtI0.f00146 -rw-rw-r-- 1 529M Oct 16 10:04 I0.f00094 -rw-rw-r-- 1 353M Oct 16 10:09 gdtI0.f00147 -rw-rw-r-- 1 529M Oct 16 10:10 I0.f00095 -rw-rw-r-- 1 353M Oct 16 10:15 gdtI0.f00148 -rw-rw-r-- 1 529M Oct 16 10:16 I0.f00096 -rw-rw-r-- 1 353M Oct 16 10:21 gdtI0.f00149 -rw-rw-r-- 1 529M Oct 16 10:22 I0.f00097 -rw-rw-r-- 1 353M Oct 16 10:27 gdtI0.f00150 -rw-rw-r-- 1 529M Oct 16 10:28 I0.f00098 -rw-rw-r-- 1 353M Oct 16 10:33 gdtI0.f00151 -rw-rw-r-- 1 529M Oct 16 10:34 I0.f00099 -rw-rw-r-- 1 353M Oct 16 10:39 gdtI0.f00152 -rw-rw-r-- 1 529M Oct 16 10:40 I0.f00100 -rw-rw-r-- 1 353M Oct 16 10:46 gdtI0.f00153 -rw-rw-r-- 1 353M Oct 16 10:52 gdtI0.f00154 -rw-rw-r-- 1 353M Oct 16 10:57 gdtI0.f00155 -rw-rw-r-- 1 353M Oct 16 11:03 gdtI0.f00156 -rw-rw-r-- 1 353M Oct 16 11:09 gdtI0.f00157 -rw-rw-r-- 1 353M Oct 16 11:15 gdtI0.f00158 -rw-rw-r-- 1 353M Oct 16 11:21 gdtI0.f00159 -rw-rw-r-- 1 353M Oct 16 11:27 gdtI0.f00160 -rw-rw-r-- 1 353M Oct 16 11:33 gdtI0.f00161 -rw-rw-r-- 1 353M Oct 16 11:39 gdtI0.f00162 -rw-rw-r-- 1 353M Oct 16 11:45 gdtI0.f00163 -rw-rw-r-- 1 353M Oct 16 11:51 gdtI0.f00164 -rw-rw-r-- 1 353M Oct 16 11:57 gdtI0.f00165 -rw-rw-r-- 1 353M Oct 16 12:03 gdtI0.f00166 -rw-rw-r-- 1 353M Oct 16 12:09 gdtI0.f00167 -rw-rw-r-- 1 353M Oct 16 12:15 gdtI0.f00168 -rw-rw-r-- 1 353M Oct 16 12:21 gdtI0.f00169 -rw-rw-r-- 1 353M Oct 16 12:27 gdtI0.f00170 -rw-rw-r-- 1 353M Oct 16 12:33 gdtI0.f00171 -rw-rw-r-- 1 353M Oct 16 12:39 gdtI0.f00172 -rw-rw-r-- 1 353M Oct 16 12:45 gdtI0.f00173 -rw-rw-r-- 1 353M Oct 16 12:51 gdtI0.f00174 -rw-rw-r-- 1 353M Oct 16 12:57 gdtI0.f00175 -rw-rw-r-- 1 353M Oct 16 13:03 gdtI0.f00176 -rw-rw-r-- 1 353M Oct 16 13:09 gdtI0.f00177 -rw-rw-r-- 1 353M Oct 16 13:15 gdtI0.f00178 -rw-rw-r-- 1 353M Oct 16 13:21 gdtI0.f00179 -rw-rw-r-- 1 353M Oct 16 13:27 gdtI0.f00180 -rw-rw-r-- 1 353M Oct 16 13:33 gdtI0.f00181 -rw-rw-r-- 1 353M Oct 16 13:39 gdtI0.f00182 -rw-rw-r-- 1 353M Oct 16 13:45 gdtI0.f00183 -rw-rw-r-- 1 353M Oct 16 13:51 gdtI0.f00184 -rw-rw-r-- 1 353M Oct 16 13:57 gdtI0.f00185 -rw-rw-r-- 1 353M Oct 16 14:03 gdtI0.f00186 -rw-rw-r-- 1 353M Oct 16 14:09 gdtI0.f00187 -rw-rw-r-- 1 353M Oct 16 14:15 gdtI0.f00188 -rw-rw-r-- 1 353M Oct 16 14:21 gdtI0.f00189 -rw-rw-r-- 1 353M Oct 16 14:27 gdtI0.f00190 -rw-rw-r-- 1 353M Oct 16 14:33 gdtI0.f00191 -rw-rw-r-- 1 353M Oct 16 14:39 gdtI0.f00192 -rw-rw-r-- 1 353M Oct 16 15:42 gdtI0.f00193 -rw-rw-r-- 1 353M Oct 16 16:34 gdtI0.f00194 -rw-rw-r-- 1 353M Oct 16 17:34 gdtI0.f00195 -rw-rw-r-- 1 353M Oct 16 18:32 gdtI0.f00196 -rw-rw-r-- 1 353M Oct 16 18:52 gdtI0.f00197 -rw-rw-r-- 1 353M Oct 16 18:58 gdtI0.f00198 -rw-rw-r-- 1 353M Oct 16 19:04 gdtI0.f00199 -rw-rw-r-- 1 353M Oct 16 19:10 gdtI0.f00200 -rw-rw-r-- 1 353M Oct 16 19:16 gdtI0.f00201 -rw-rw-r-- 1 353M Oct 16 19:22 gdtI0.f00202 -rw-rw-r-- 1 353M Oct 16 19:28 gdtI0.f00203 -rw-rw-r-- 1 353M Oct 16 19:34 gdtI0.f00204 -rw-rw-r-- 1 353M Oct 16 19:40 gdtI0.f00205 -rw-rw-r-- 1 353M Oct 16 19:46 gdtI0.f00206 -rw-rw-r-- 1 353M Oct 16 19:52 gdtI0.f00207 -rw-rw-r-- 1 353M Oct 16 19:58 gdtI0.f00208 -rw-rw-r-- 1 353M Oct 16 19:58 gdtI0.f00208 -rw-rw-r-- 1 353M Oct 16 20:04 gdtI0.f00209 -rw-rw-r-- 1 353M Oct 16 20:10 gdtI0.f00210 -rw-rw-r-- 1 353M Oct 16 20:16 gdtI0.f00211 -rw-rw-r-- 1 353M Oct 16 20:22 gdtI0.f00212 -rw-rw-r-- 1 353M Oct 16 20:28 gdtI0.f00213 -rw-rw-r-- 1 353M Oct 16 20:34 gdtI0.f00214 -rw-rw-r-- 1 353M Oct 16 20:40 gdtI0.f00215 -rw-rw-r-- 1 353M Oct 16 20:46 gdtI0.f00216 -rw-rw-r-- 1 353M Oct 16 20:52 gdtI0.f00217 -rw-rw-r-- 1 353M Oct 16 20:58 gdtI0.f00218 -rw-rw-r-- 1 353M Oct 16 21:04 gdtI0.f00219 -rw-rw-r-- 1 353M Oct 16 21:10 gdtI0.f00220 -rw-rw-r-- 1 353M Oct 16 21:16 gdtI0.f00221 -rw-rw-r-- 1 353M Oct 16 21:22 gdtI0.f00222 -rw-rw-r-- 1 353M Oct 16 21:28 gdtI0.f00223 -rw-rw-r-- 1 353M Oct 16 21:34 gdtI0.f00224 -rw-rw-r-- 1 353M Oct 16 21:40 gdtI0.f00225 -rw-rw-r-- 1 353M Oct 16 21:46 gdtI0.f00226 -rw-rw-r-- 1 353M Oct 16 21:52 gdtI0.f00227 -rw-rw-r-- 1 353M Oct 16 21:58 gdtI0.f00228 -rw-rw-r-- 1 353M Oct 16 22:04 gdtI0.f00229 -rw-rw-r-- 1 353M Oct 16 22:10 gdtI0.f00230 -rw-rw-r-- 1 353M Oct 16 22:16 gdtI0.f00231 -rw-rw-r-- 1 353M Oct 16 22:22 gdtI0.f00232 -rw-rw-r-- 1 353M Oct 16 22:28 gdtI0.f00233 -rw-rw-r-- 1 353M Oct 16 22:34 gdtI0.f00234 -rw-rw-r-- 1 353M Oct 16 22:40 gdtI0.f00235 -rw-rw-r-- 1 353M Oct 16 22:46 gdtI0.f00236 -rw-rw-r-- 1 353M Oct 16 22:52 gdtI0.f00237 -rw-rw-r-- 1 353M Oct 16 22:58 gdtI0.f00238 -rw-rw-r-- 1 353M Oct 16 23:04 gdtI0.f00239 -rw-rw-r-- 1 353M Oct 16 23:10 gdtI0.f00240 -rw-rw-r-- 1 353M Oct 16 23:16 gdtI0.f00241 -rw-rw-r-- 1 353M Oct 16 23:22 gdtI0.f00242 -rw-rw-r-- 1 353M Oct 16 23:28 gdtI0.f00243 -rw-rw-r-- 1 353M Oct 16 23:34 gdtI0.f00244 -rw-rw-r-- 1 353M Oct 16 23:40 gdtI0.f00245 -rw-rw-r-- 1 353M Oct 16 23:46 gdtI0.f00246 -rw-rw-r-- 1 353M Oct 16 23:52 gdtI0.f00247 -rw-rw-r-- 1 353M Oct 16 23:58 gdtI0.f00248 -rw-rw-r-- 1 353M Oct 17 00:04 gdtI0.f00249 -rw-rw-r-- 1 353M Oct 17 00:10 gdtI0.f00250 -rw-rw-r-- 1 353M Oct 17 00:16 gdtI0.f00251 -rw-rw-r-- 1 353M Oct 17 00:22 gdtI0.f00252 -rw-rw-r-- 1 353M Oct 17 00:28 gdtI0.f00253 -rw-rw-r-- 1 353M Oct 17 00:34 gdtI0.f00254 -rw-rw-r-- 1 353M Oct 17 00:40 gdtI0.f00255 -rw-rw-r-- 1 353M Oct 17 00:46 gdtI0.f00256 -rw-rw-r-- 1 353M Oct 17 00:52 gdtI0.f00257 -rw-rw-r-- 1 353M Oct 17 00:58 gdtI0.f00258 -rw-rw-r-- 1 353M Oct 17 01:04 gdtI0.f00259 -rw-rw-r-- 1 353M Oct 17 01:10 gdtI0.f00260 -rw-rw-r-- 1 353M Oct 17 01:16 gdtI0.f00261 -rw-rw-r-- 1 353M Oct 17 01:22 gdtI0.f00262 -rw-rw-r-- 1 353M Oct 17 01:28 gdtI0.f00263 -rw-rw-r-- 1 353M Oct 17 01:34 gdtI0.f00264 -rw-rw-r-- 1 353M Oct 17 01:40 gdtI0.f00265 -rw-rw-r-- 1 353M Oct 17 01:46 gdtI0.f00266 -rw-rw-r-- 1 353M Oct 17 01:52 gdtI0.f00267 -rw-rw-r-- 1 353M Oct 17 01:58 gdtI0.f00268 -rw-rw-r-- 1 353M Oct 17 02:04 gdtI0.f00269 -rw-rw-r-- 1 353M Oct 17 02:10 gdtI0.f00270 -rw-rw-r-- 1 353M Oct 17 02:16 gdtI0.f00271 -rw-rw-r-- 1 353M Oct 17 02:22 gdtI0.f00272 -rw-rw-r-- 1 353M Oct 17 02:28 gdtI0.f00273 -rw-rw-r-- 1 353M Oct 17 02:34 gdtI0.f00274 -rw-rw-r-- 1 353M Oct 17 02:40 gdtI0.f00275 -rw-rw-r-- 1 353M Oct 17 02:46 gdtI0.f00276 -rw-rw-r-- 1 353M Oct 17 02:52 gdtI0.f00277 -rw-rw-r-- 1 353M Oct 17 02:58 gdtI0.f00278 -rw-rw-r-- 1 353M Oct 17 03:04 gdtI0.f00279 -rw-rw-r-- 1 353M Oct 17 03:10 gdtI0.f00280 -rw-rw-r-- 1 353M Oct 17 03:16 gdtI0.f00281 -rw-rw-r-- 1 353M Oct 17 03:22 gdtI0.f00282 -rw-rw-r-- 1 353M Oct 17 03:28 gdtI0.f00283 -rw-rw-r-- 1 353M Oct 17 03:34 gdtI0.f00284 -rw-rw-r-- 1 353M Oct 17 03:40 gdtI0.f00285 -rw-rw-r-- 1 353M Oct 17 03:46 gdtI0.f00286 -rw-rw-r-- 1 353M Oct 17 03:52 gdtI0.f00287 -rw-rw-r-- 1 353M Oct 17 03:58 gdtI0.f00288 -rw-rw-r-- 1 353M Oct 17 04:04 gdtI0.f00289 -rw-rw-r-- 1 353M Oct 17 04:10 gdtI0.f00290 -rw-rw-r-- 1 353M Oct 17 04:16 gdtI0.f00291 -rw-rw-r-- 1 353M Oct 17 04:22 gdtI0.f00292 -rw-rw-r-- 1 353M Oct 17 04:28 gdtI0.f00293 -rw-rw-r-- 1 353M Oct 17 04:34 gdtI0.f00294 -rw-rw-r-- 1 353M Oct 17 04:40 gdtI0.f00295 -rw-rw-r-- 1 353M Oct 17 04:46 gdtI0.f00296 -rw-rw-r-- 1 353M Oct 17 04:52 gdtI0.f00297 -rw-rw-r-- 1 353M Oct 17 04:58 gdtI0.f00298 -rw-rw-r-- 1 353M Oct 17 05:04 gdtI0.f00299 -rw-rw-r-- 1 353M Oct 17 05:10 gdtI0.f00300 -rw-rw-r-- 1 353M Oct 17 05:16 gdtI0.f00301 -rw-rw-r-- 1 353M Oct 17 05:22 gdtI0.f00302 -rw-rw-r-- 1 353M Oct 17 05:28 gdtI0.f00303 -rw-rw-r-- 1 353M Oct 17 05:34 gdtI0.f00304 -rw-rw-r-- 1 353M Oct 17 05:40 gdtI0.f00305 -rw-rw-r-- 1 353M Oct 17 05:46 gdtI0.f00306 -rw-rw-r-- 1 353M Oct 17 05:52 gdtI0.f00307 -rw-rw-r-- 1 353M Oct 17 05:58 gdtI0.f00308 -rw-rw-r-- 1 353M Oct 17 06:04 gdtI0.f00309 -rw-rw-r-- 1 353M Oct 17 06:10 gdtI0.f00310 -rw-rw-r-- 1 353M Oct 17 06:16 gdtI0.f00311 -rw-rw-r-- 1 353M Oct 17 06:22 gdtI0.f00312 -rw-rw-r-- 1 353M Oct 17 06:22 gdtI0.f00312 -rw-rw-r-- 1 353M Oct 17 06:28 gdtI0.f00313 -rw-rw-r-- 1 353M Oct 17 06:34 gdtI0.f00314 -rw-rw-r-- 1 353M Oct 17 06:40 gdtI0.f00315 -rw-rw-r-- 1 353M Oct 17 06:46 gdtI0.f00316 -rw-rw-r-- 1 377M Oct 17 06:52 hpts.out -rw-rw-r-- 1 353M Oct 17 06:52 gdtI0.f00317 -rw-rw-r-- 1 190M Oct 17 06:56 slurm-1134244.out -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Tue Oct 27 07:23:13 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Tue, 27 Oct 2015 12:23:13 +0000 Subject: [Nek5000-users] output through .rea and through usrchk In-Reply-To: References: Message-ID: There is an issue that you don't know for certain the sign of param(12)... so I would check to be sure to clean up your integer il_hptsout. To me, however, it's not clear that that issue alone would be causing the problem. Paul ________________________________ From: nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] Sent: Tuesday, October 27, 2015 6:33 AM To: nek5000-users at lists.mcs.anl.gov Subject: [Nek5000-users] output through .rea and through usrchk Dear neks, Strange thing happend to a simulation where I made "standart" output through .rea file, i.e. -0.010000E-01 p012 DT 0.00000 p013 IOCOMM 0.50000 p014 IOTIME and at the same time I need scalar gradients, so I've put to usrchk: il_hptsout=-0.5/param(12) if ((istep.gt.0).and.(mod(istep,il_hptsout).eq.0)) then call gradm1(dtdx,dtdy,dtdz,t) call outpost(dtdx,dtdy,dtdz,pr,t,'gdt') endif The strange thing that gdt* (from usrchk) files are saved as should should be, but "standart" CASE0.f* were saved onli partially, below is 'ls -rt' of the case directory. Why whould that happen? may it be cluster issue? (file sizes are not small ~530mb) -rw-rw-r-- 1 35K Oct 15 02:52 compiler.out -rw-rw-r-- 1 99 Oct 15 02:55 SESSION.NAME -rw-rw-r-- 1 52 Oct 15 02:55 lognekbmpi.txt -rw-rw-r-- 1 353M Oct 15 03:54 gdtI0.f00001 -rw-rw-r-- 1 353M Oct 15 04:51 gdtI0.f00002 -rw-rw-r-- 1 353M Oct 15 05:29 gdtI0.f00003 -rw-rw-r-- 1 529M Oct 15 05:29 I0.f00001 -rw-rw-r-- 1 353M Oct 15 06:07 gdtI0.f00004 -rw-rw-r-- 1 529M Oct 15 06:07 I0.f00002 -rw-rw-r-- 1 353M Oct 15 06:39 gdtI0.f00005 -rw-rw-r-- 1 529M Oct 15 06:39 I0.f00003 -rw-rw-r-- 1 353M Oct 15 08:23 gdtI0.f00006 -rw-rw-r-- 1 529M Oct 15 08:23 I0.f00004 -rw-rw-r-- 1 353M Oct 15 09:29 gdtI0.f00007 -rw-rw-r-- 1 529M Oct 15 09:29 I0.f00005 -rw-rw-r-- 1 353M Oct 15 10:11 gdtI0.f00008 -rw-rw-r-- 1 529M Oct 15 10:12 I0.f00006 -rw-rw-r-- 1 353M Oct 15 10:57 gdtI0.f00009 -rw-rw-r-- 1 529M Oct 15 10:58 I0.f00007 -rw-rw-r-- 1 353M Oct 15 11:49 gdtI0.f00010 -rw-rw-r-- 1 353M Oct 15 12:41 gdtI0.f00011 -rw-rw-r-- 1 353M Oct 15 13:12 gdtI0.f00012 -rw-rw-r-- 1 353M Oct 15 13:48 gdtI0.f00013 -rw-rw-r-- 1 353M Oct 15 14:28 gdtI0.f00014 -rw-rw-r-- 1 353M Oct 15 15:01 gdtI0.f00015 -rw-rw-r-- 1 353M Oct 15 16:34 gdtI0.f00016 -rw-rw-r-- 1 353M Oct 15 18:18 gdtI0.f00017 -rw-rw-r-- 1 353M Oct 15 21:07 gdtI0.f00018 -rw-rw-r-- 1 353M Oct 15 21:13 gdtI0.f00019 -rw-rw-r-- 1 353M Oct 15 21:19 gdtI0.f00020 -rw-rw-r-- 1 529M Oct 15 21:19 I0.f00008 -rw-rw-r-- 1 353M Oct 15 21:25 gdtI0.f00021 -rw-rw-r-- 1 529M Oct 15 21:25 I0.f00009 -rw-rw-r-- 1 353M Oct 15 21:31 gdtI0.f00022 -rw-rw-r-- 1 529M Oct 15 21:31 I0.f00010 -rw-rw-r-- 1 353M Oct 15 21:37 gdtI0.f00023 -rw-rw-r-- 1 529M Oct 15 21:37 I0.f00011 -rw-rw-r-- 1 353M Oct 15 21:43 gdtI0.f00024 -rw-rw-r-- 1 529M Oct 15 21:43 I0.f00012 -rw-rw-r-- 1 353M Oct 15 21:49 gdtI0.f00025 -rw-rw-r-- 1 529M Oct 15 21:50 I0.f00013 -rw-rw-r-- 1 353M Oct 15 21:56 gdtI0.f00026 -rw-rw-r-- 1 529M Oct 15 21:56 I0.f00014 -rw-rw-r-- 1 353M Oct 15 22:02 gdtI0.f00027 -rw-rw-r-- 1 529M Oct 15 22:02 I0.f00015 -rw-rw-r-- 1 353M Oct 15 22:08 gdtI0.f00028 -rw-rw-r-- 1 529M Oct 15 22:08 I0.f00016 -rw-rw-r-- 1 353M Oct 15 22:14 gdtI0.f00029 -rw-rw-r-- 1 529M Oct 15 22:14 I0.f00017 -rw-rw-r-- 1 353M Oct 15 22:20 gdtI0.f00030 -rw-rw-r-- 1 529M Oct 15 22:20 I0.f00018 -rw-rw-r-- 1 353M Oct 15 22:26 gdtI0.f00031 -rw-rw-r-- 1 529M Oct 15 22:26 I0.f00019 -rw-rw-r-- 1 353M Oct 15 22:32 gdtI0.f00032 -rw-rw-r-- 1 529M Oct 15 22:32 I0.f00020 -rw-rw-r-- 1 353M Oct 15 22:38 gdtI0.f00033 -rw-rw-r-- 1 529M Oct 15 22:38 I0.f00021 -rw-rw-r-- 1 353M Oct 15 22:44 gdtI0.f00034 -rw-rw-r-- 1 529M Oct 15 22:44 I0.f00022 -rw-rw-r-- 1 353M Oct 15 22:50 gdtI0.f00035 -rw-rw-r-- 1 529M Oct 15 22:50 I0.f00023 -rw-rw-r-- 1 353M Oct 15 22:56 gdtI0.f00036 -rw-rw-r-- 1 529M Oct 15 22:56 I0.f00024 -rw-rw-r-- 1 353M Oct 15 23:02 gdtI0.f00037 -rw-rw-r-- 1 529M Oct 15 23:02 I0.f00025 -rw-rw-r-- 1 353M Oct 15 23:08 gdtI0.f00038 -rw-rw-r-- 1 353M Oct 15 23:14 gdtI0.f00039 -rw-rw-r-- 1 353M Oct 15 23:20 gdtI0.f00040 -rw-rw-r-- 1 353M Oct 15 23:26 gdtI0.f00041 -rw-rw-r-- 1 353M Oct 15 23:32 gdtI0.f00042 -rw-rw-r-- 1 353M Oct 15 23:38 gdtI0.f00043 -rw-rw-r-- 1 353M Oct 15 23:44 gdtI0.f00044 -rw-rw-r-- 1 353M Oct 15 23:50 gdtI0.f00045 -rw-rw-r-- 1 353M Oct 15 23:56 gdtI0.f00046 -rw-rw-r-- 1 353M Oct 16 00:01 gdtI0.f00047 -rw-rw-r-- 1 353M Oct 16 00:07 gdtI0.f00048 -rw-rw-r-- 1 353M Oct 16 00:13 gdtI0.f00049 -rw-rw-r-- 1 353M Oct 16 00:19 gdtI0.f00050 -rw-rw-r-- 1 353M Oct 16 00:25 gdtI0.f00051 -rw-rw-r-- 1 353M Oct 16 00:31 gdtI0.f00052 -rw-rw-r-- 1 353M Oct 16 00:37 gdtI0.f00053 -rw-rw-r-- 1 353M Oct 16 00:43 gdtI0.f00054 -rw-rw-r-- 1 353M Oct 16 00:49 gdtI0.f00055 -rw-rw-r-- 1 353M Oct 16 00:55 gdtI0.f00056 -rw-rw-r-- 1 353M Oct 16 01:01 gdtI0.f00057 -rw-rw-r-- 1 353M Oct 16 01:07 gdtI0.f00058 -rw-rw-r-- 1 353M Oct 16 01:13 gdtI0.f00059 -rw-rw-r-- 1 353M Oct 16 01:19 gdtI0.f00060 -rw-rw-r-- 1 353M Oct 16 01:25 gdtI0.f00061 -rw-rw-r-- 1 353M Oct 16 01:31 gdtI0.f00062 -rw-rw-r-- 1 353M Oct 16 01:36 gdtI0.f00063 -rw-rw-r-- 1 353M Oct 16 01:42 gdtI0.f00064 -rw-rw-r-- 1 353M Oct 16 01:48 gdtI0.f00065 -rw-rw-r-- 1 353M Oct 16 01:54 gdtI0.f00066 -rw-rw-r-- 1 353M Oct 16 02:00 gdtI0.f00067 -rw-rw-r-- 1 353M Oct 16 02:06 gdtI0.f00068 -rw-rw-r-- 1 353M Oct 16 02:12 gdtI0.f00069 -rw-rw-r-- 1 353M Oct 16 02:18 gdtI0.f00070 -rw-rw-r-- 1 353M Oct 16 02:24 gdtI0.f00071 -rw-rw-r-- 1 353M Oct 16 02:30 gdtI0.f00072 -rw-rw-r-- 1 353M Oct 16 02:36 gdtI0.f00073 -rw-rw-r-- 1 353M Oct 16 02:42 gdtI0.f00074 -rw-rw-r-- 1 353M Oct 16 02:48 gdtI0.f00075 -rw-rw-r-- 1 353M Oct 16 02:54 gdtI0.f00076 -rw-rw-r-- 1 353M Oct 16 03:00 gdtI0.f00077 -rw-rw-r-- 1 353M Oct 16 03:06 gdtI0.f00078 -rw-rw-r-- 1 529M Oct 16 03:06 I0.f00026 -rw-rw-r-- 1 353M Oct 16 03:12 gdtI0.f00079 -rw-rw-r-- 1 529M Oct 16 03:12 I0.f00027 -rw-rw-r-- 1 353M Oct 16 03:18 gdtI0.f00080 -rw-rw-r-- 1 529M Oct 16 03:18 I0.f00028 -rw-rw-r-- 1 353M Oct 16 03:24 gdtI0.f00081 -rw-rw-r-- 1 529M Oct 16 03:25 I0.f00029 -rw-rw-r-- 1 353M Oct 16 03:31 gdtI0.f00082 -rw-rw-r-- 1 529M Oct 16 03:31 I0.f00030 -rw-rw-r-- 1 353M Oct 16 03:37 gdtI0.f00083 -rw-rw-r-- 1 529M Oct 16 03:37 I0.f00031 -rw-rw-r-- 1 353M Oct 16 03:43 gdtI0.f00084 -rw-rw-r-- 1 529M Oct 16 03:44 I0.f00032 -rw-rw-r-- 1 353M Oct 16 03:50 gdtI0.f00085 -rw-rw-r-- 1 529M Oct 16 03:50 I0.f00033 -rw-rw-r-- 1 353M Oct 16 03:56 gdtI0.f00086 -rw-rw-r-- 1 529M Oct 16 03:56 I0.f00034 -rw-rw-r-- 1 353M Oct 16 04:02 gdtI0.f00087 -rw-rw-r-- 1 529M Oct 16 04:02 I0.f00035 -rw-rw-r-- 1 353M Oct 16 04:08 gdtI0.f00088 -rw-rw-r-- 1 529M Oct 16 04:08 I0.f00036 -rw-rw-r-- 1 353M Oct 16 04:14 gdtI0.f00089 -rw-rw-r-- 1 529M Oct 16 04:14 I0.f00037 -rw-rw-r-- 1 353M Oct 16 04:20 gdtI0.f00090 -rw-rw-r-- 1 529M Oct 16 04:21 I0.f00038 -rw-rw-r-- 1 353M Oct 16 04:27 gdtI0.f00091 -rw-rw-r-- 1 529M Oct 16 04:27 I0.f00039 -rw-rw-r-- 1 353M Oct 16 04:33 gdtI0.f00092 -rw-rw-r-- 1 529M Oct 16 04:33 I0.f00040 -rw-rw-r-- 1 353M Oct 16 04:39 gdtI0.f00093 -rw-rw-r-- 1 529M Oct 16 04:39 I0.f00041 -rw-rw-r-- 1 353M Oct 16 04:45 gdtI0.f00094 -rw-rw-r-- 1 529M Oct 16 04:45 I0.f00042 -rw-rw-r-- 1 353M Oct 16 04:51 gdtI0.f00095 -rw-rw-r-- 1 529M Oct 16 04:52 I0.f00043 -rw-rw-r-- 1 353M Oct 16 04:58 gdtI0.f00096 -rw-rw-r-- 1 529M Oct 16 04:58 I0.f00044 -rw-rw-r-- 1 353M Oct 16 05:04 gdtI0.f00097 -rw-rw-r-- 1 529M Oct 16 05:04 I0.f00045 -rw-rw-r-- 1 353M Oct 16 05:10 gdtI0.f00098 -rw-rw-r-- 1 529M Oct 16 05:11 I0.f00046 -rw-rw-r-- 1 353M Oct 16 05:17 gdtI0.f00099 -rw-rw-r-- 1 529M Oct 16 05:17 I0.f00047 -rw-rw-r-- 1 353M Oct 16 05:23 gdtI0.f00100 -rw-rw-r-- 1 529M Oct 16 05:23 I0.f00048 -rw-rw-r-- 1 353M Oct 16 05:29 gdtI0.f00101 -rw-rw-r-- 1 529M Oct 16 05:29 I0.f00049 -rw-rw-r-- 1 353M Oct 16 05:35 gdtI0.f00102 -rw-rw-r-- 1 529M Oct 16 05:35 I0.f00050 -rw-rw-r-- 1 353M Oct 16 05:41 gdtI0.f00103 -rw-rw-r-- 1 529M Oct 16 05:41 I0.f00051 -rw-rw-r-- 1 353M Oct 16 05:47 gdtI0.f00104 -rw-rw-r-- 1 529M Oct 16 05:48 I0.f00052 -rw-rw-r-- 1 353M Oct 16 05:54 gdtI0.f00105 -rw-rw-r-- 1 529M Oct 16 05:54 I0.f00053 -rw-rw-r-- 1 353M Oct 16 06:00 gdtI0.f00106 -rw-rw-r-- 1 529M Oct 16 06:00 I0.f00054 -rw-rw-r-- 1 353M Oct 16 06:06 gdtI0.f00107 -rw-rw-r-- 1 529M Oct 16 06:06 I0.f00055 -rw-rw-r-- 1 353M Oct 16 06:12 gdtI0.f00108 -rw-rw-r-- 1 529M Oct 16 06:13 I0.f00056 -rw-rw-r-- 1 353M Oct 16 06:18 gdtI0.f00109 -rw-rw-r-- 1 529M Oct 16 06:19 I0.f00057 -rw-rw-r-- 1 353M Oct 16 06:24 gdtI0.f00110 -rw-rw-r-- 1 529M Oct 16 06:25 I0.f00058 -rw-rw-r-- 1 353M Oct 16 06:31 gdtI0.f00111 -rw-rw-r-- 1 529M Oct 16 06:31 I0.f00059 -rw-rw-r-- 1 353M Oct 16 06:37 gdtI0.f00112 -rw-rw-r-- 1 529M Oct 16 06:37 I0.f00060 -rw-rw-r-- 1 353M Oct 16 06:43 gdtI0.f00113 -rw-rw-r-- 1 529M Oct 16 06:44 I0.f00061 -rw-rw-r-- 1 353M Oct 16 06:50 gdtI0.f00114 -rw-rw-r-- 1 529M Oct 16 06:50 I0.f00062 -rw-rw-r-- 1 353M Oct 16 06:56 gdtI0.f00115 -rw-rw-r-- 1 529M Oct 16 06:56 I0.f00063 -rw-rw-r-- 1 353M Oct 16 07:02 gdtI0.f00116 -rw-rw-r-- 1 529M Oct 16 07:02 I0.f00064 -rw-rw-r-- 1 353M Oct 16 07:08 gdtI0.f00117 -rw-rw-r-- 1 529M Oct 16 07:08 I0.f00065 -rw-rw-r-- 1 353M Oct 16 07:14 gdtI0.f00118 -rw-rw-r-- 1 529M Oct 16 07:14 I0.f00066 -rw-rw-r-- 1 353M Oct 16 07:20 gdtI0.f00119 -rw-rw-r-- 1 529M Oct 16 07:20 I0.f00067 -rw-rw-r-- 1 353M Oct 16 07:26 gdtI0.f00120 -rw-rw-r-- 1 529M Oct 16 07:26 I0.f00068 -rw-rw-r-- 1 353M Oct 16 07:32 gdtI0.f00121 -rw-rw-r-- 1 529M Oct 16 07:32 I0.f00069 -rw-rw-r-- 1 353M Oct 16 07:38 gdtI0.f00122 -rw-rw-r-- 1 529M Oct 16 07:38 I0.f00070 -rw-rw-r-- 1 353M Oct 16 07:44 gdtI0.f00123 -rw-rw-r-- 1 529M Oct 16 07:44 I0.f00071 -rw-rw-r-- 1 353M Oct 16 07:50 gdtI0.f00124 -rw-rw-r-- 1 529M Oct 16 07:50 I0.f00072 -rw-rw-r-- 1 353M Oct 16 07:56 gdtI0.f00125 -rw-rw-r-- 1 529M Oct 16 07:56 I0.f00073 -rw-rw-r-- 1 353M Oct 16 08:02 gdtI0.f00126 -rw-rw-r-- 1 529M Oct 16 08:02 I0.f00074 -rw-rw-r-- 1 353M Oct 16 08:08 gdtI0.f00127 -rw-rw-r-- 1 529M Oct 16 08:08 I0.f00075 -rw-rw-r-- 1 353M Oct 16 08:14 gdtI0.f00128 -rw-rw-r-- 1 529M Oct 16 08:14 I0.f00076 -rw-rw-r-- 1 353M Oct 16 08:20 gdtI0.f00129 -rw-rw-r-- 1 529M Oct 16 08:21 I0.f00077 -rw-rw-r-- 1 529M Oct 16 08:14 I0.f00076 -rw-rw-r-- 1 353M Oct 16 08:20 gdtI0.f00129 -rw-rw-r-- 1 529M Oct 16 08:21 I0.f00077 -rw-rw-r-- 1 353M Oct 16 08:26 gdtI0.f00130 -rw-rw-r-- 1 529M Oct 16 08:27 I0.f00078 -rw-rw-r-- 1 353M Oct 16 08:32 gdtI0.f00131 -rw-rw-r-- 1 529M Oct 16 08:33 I0.f00079 -rw-rw-r-- 1 353M Oct 16 08:39 gdtI0.f00132 -rw-rw-r-- 1 529M Oct 16 08:39 I0.f00080 -rw-rw-r-- 1 353M Oct 16 08:45 gdtI0.f00133 -rw-rw-r-- 1 529M Oct 16 08:45 I0.f00081 -rw-rw-r-- 1 353M Oct 16 08:51 gdtI0.f00134 -rw-rw-r-- 1 529M Oct 16 08:51 I0.f00082 -rw-rw-r-- 1 353M Oct 16 08:57 gdtI0.f00135 -rw-rw-r-- 1 529M Oct 16 08:57 I0.f00083 -rw-rw-r-- 1 353M Oct 16 09:03 gdtI0.f00136 -rw-rw-r-- 1 529M Oct 16 09:03 I0.f00084 -rw-rw-r-- 1 353M Oct 16 09:09 gdtI0.f00137 -rw-rw-r-- 1 529M Oct 16 09:09 I0.f00085 -rw-rw-r-- 1 353M Oct 16 09:15 gdtI0.f00138 -rw-rw-r-- 1 529M Oct 16 09:15 I0.f00086 -rw-rw-r-- 1 353M Oct 16 09:21 gdtI0.f00139 -rw-rw-r-- 1 529M Oct 16 09:22 I0.f00087 -rw-rw-r-- 1 353M Oct 16 09:27 gdtI0.f00140 -rw-rw-r-- 1 529M Oct 16 09:28 I0.f00088 -rw-rw-r-- 1 353M Oct 16 09:33 gdtI0.f00141 -rw-rw-r-- 1 529M Oct 16 09:34 I0.f00089 -rw-rw-r-- 1 353M Oct 16 09:40 gdtI0.f00142 -rw-rw-r-- 1 529M Oct 16 09:40 I0.f00090 -rw-rw-r-- 1 353M Oct 16 09:46 gdtI0.f00143 -rw-rw-r-- 1 529M Oct 16 09:46 I0.f00091 -rw-rw-r-- 1 353M Oct 16 09:52 gdtI0.f00144 -rw-rw-r-- 1 529M Oct 16 09:52 I0.f00092 -rw-rw-r-- 1 353M Oct 16 09:57 gdtI0.f00145 -rw-rw-r-- 1 529M Oct 16 09:58 I0.f00093 -rw-rw-r-- 1 353M Oct 16 10:03 gdtI0.f00146 -rw-rw-r-- 1 529M Oct 16 10:04 I0.f00094 -rw-rw-r-- 1 353M Oct 16 10:09 gdtI0.f00147 -rw-rw-r-- 1 529M Oct 16 10:10 I0.f00095 -rw-rw-r-- 1 353M Oct 16 10:15 gdtI0.f00148 -rw-rw-r-- 1 529M Oct 16 10:16 I0.f00096 -rw-rw-r-- 1 353M Oct 16 10:21 gdtI0.f00149 -rw-rw-r-- 1 529M Oct 16 10:22 I0.f00097 -rw-rw-r-- 1 353M Oct 16 10:27 gdtI0.f00150 -rw-rw-r-- 1 529M Oct 16 10:28 I0.f00098 -rw-rw-r-- 1 353M Oct 16 10:33 gdtI0.f00151 -rw-rw-r-- 1 529M Oct 16 10:34 I0.f00099 -rw-rw-r-- 1 353M Oct 16 10:39 gdtI0.f00152 -rw-rw-r-- 1 529M Oct 16 10:40 I0.f00100 -rw-rw-r-- 1 353M Oct 16 10:46 gdtI0.f00153 -rw-rw-r-- 1 353M Oct 16 10:52 gdtI0.f00154 -rw-rw-r-- 1 353M Oct 16 10:57 gdtI0.f00155 -rw-rw-r-- 1 353M Oct 16 11:03 gdtI0.f00156 -rw-rw-r-- 1 353M Oct 16 11:09 gdtI0.f00157 -rw-rw-r-- 1 353M Oct 16 11:15 gdtI0.f00158 -rw-rw-r-- 1 353M Oct 16 11:21 gdtI0.f00159 -rw-rw-r-- 1 353M Oct 16 11:27 gdtI0.f00160 -rw-rw-r-- 1 353M Oct 16 11:33 gdtI0.f00161 -rw-rw-r-- 1 353M Oct 16 11:39 gdtI0.f00162 -rw-rw-r-- 1 353M Oct 16 11:45 gdtI0.f00163 -rw-rw-r-- 1 353M Oct 16 11:51 gdtI0.f00164 -rw-rw-r-- 1 353M Oct 16 11:57 gdtI0.f00165 -rw-rw-r-- 1 353M Oct 16 12:03 gdtI0.f00166 -rw-rw-r-- 1 353M Oct 16 12:09 gdtI0.f00167 -rw-rw-r-- 1 353M Oct 16 12:15 gdtI0.f00168 -rw-rw-r-- 1 353M Oct 16 12:21 gdtI0.f00169 -rw-rw-r-- 1 353M Oct 16 12:27 gdtI0.f00170 -rw-rw-r-- 1 353M Oct 16 12:33 gdtI0.f00171 -rw-rw-r-- 1 353M Oct 16 12:39 gdtI0.f00172 -rw-rw-r-- 1 353M Oct 16 12:45 gdtI0.f00173 -rw-rw-r-- 1 353M Oct 16 12:51 gdtI0.f00174 -rw-rw-r-- 1 353M Oct 16 12:57 gdtI0.f00175 -rw-rw-r-- 1 353M Oct 16 13:03 gdtI0.f00176 -rw-rw-r-- 1 353M Oct 16 13:09 gdtI0.f00177 -rw-rw-r-- 1 353M Oct 16 13:15 gdtI0.f00178 -rw-rw-r-- 1 353M Oct 16 13:21 gdtI0.f00179 -rw-rw-r-- 1 353M Oct 16 13:27 gdtI0.f00180 -rw-rw-r-- 1 353M Oct 16 13:33 gdtI0.f00181 -rw-rw-r-- 1 353M Oct 16 13:39 gdtI0.f00182 -rw-rw-r-- 1 353M Oct 16 13:45 gdtI0.f00183 -rw-rw-r-- 1 353M Oct 16 13:51 gdtI0.f00184 -rw-rw-r-- 1 353M Oct 16 13:57 gdtI0.f00185 -rw-rw-r-- 1 353M Oct 16 14:03 gdtI0.f00186 -rw-rw-r-- 1 353M Oct 16 14:09 gdtI0.f00187 -rw-rw-r-- 1 353M Oct 16 14:15 gdtI0.f00188 -rw-rw-r-- 1 353M Oct 16 14:21 gdtI0.f00189 -rw-rw-r-- 1 353M Oct 16 14:27 gdtI0.f00190 -rw-rw-r-- 1 353M Oct 16 14:33 gdtI0.f00191 -rw-rw-r-- 1 353M Oct 16 14:39 gdtI0.f00192 -rw-rw-r-- 1 353M Oct 16 15:42 gdtI0.f00193 -rw-rw-r-- 1 353M Oct 16 16:34 gdtI0.f00194 -rw-rw-r-- 1 353M Oct 16 17:34 gdtI0.f00195 -rw-rw-r-- 1 353M Oct 16 18:32 gdtI0.f00196 -rw-rw-r-- 1 353M Oct 16 18:52 gdtI0.f00197 -rw-rw-r-- 1 353M Oct 16 18:58 gdtI0.f00198 -rw-rw-r-- 1 353M Oct 16 19:04 gdtI0.f00199 -rw-rw-r-- 1 353M Oct 16 19:10 gdtI0.f00200 -rw-rw-r-- 1 353M Oct 16 19:16 gdtI0.f00201 -rw-rw-r-- 1 353M Oct 16 19:22 gdtI0.f00202 -rw-rw-r-- 1 353M Oct 16 19:28 gdtI0.f00203 -rw-rw-r-- 1 353M Oct 16 19:34 gdtI0.f00204 -rw-rw-r-- 1 353M Oct 16 19:40 gdtI0.f00205 -rw-rw-r-- 1 353M Oct 16 19:46 gdtI0.f00206 -rw-rw-r-- 1 353M Oct 16 19:52 gdtI0.f00207 -rw-rw-r-- 1 353M Oct 16 19:58 gdtI0.f00208 -rw-rw-r-- 1 353M Oct 16 19:58 gdtI0.f00208 -rw-rw-r-- 1 353M Oct 16 20:04 gdtI0.f00209 -rw-rw-r-- 1 353M Oct 16 20:10 gdtI0.f00210 -rw-rw-r-- 1 353M Oct 16 20:16 gdtI0.f00211 -rw-rw-r-- 1 353M Oct 16 20:22 gdtI0.f00212 -rw-rw-r-- 1 353M Oct 16 20:28 gdtI0.f00213 -rw-rw-r-- 1 353M Oct 16 20:34 gdtI0.f00214 -rw-rw-r-- 1 353M Oct 16 20:40 gdtI0.f00215 -rw-rw-r-- 1 353M Oct 16 20:46 gdtI0.f00216 -rw-rw-r-- 1 353M Oct 16 20:52 gdtI0.f00217 -rw-rw-r-- 1 353M Oct 16 20:58 gdtI0.f00218 -rw-rw-r-- 1 353M Oct 16 21:04 gdtI0.f00219 -rw-rw-r-- 1 353M Oct 16 21:10 gdtI0.f00220 -rw-rw-r-- 1 353M Oct 16 21:16 gdtI0.f00221 -rw-rw-r-- 1 353M Oct 16 21:22 gdtI0.f00222 -rw-rw-r-- 1 353M Oct 16 21:28 gdtI0.f00223 -rw-rw-r-- 1 353M Oct 16 21:34 gdtI0.f00224 -rw-rw-r-- 1 353M Oct 16 21:40 gdtI0.f00225 -rw-rw-r-- 1 353M Oct 16 21:46 gdtI0.f00226 -rw-rw-r-- 1 353M Oct 16 21:52 gdtI0.f00227 -rw-rw-r-- 1 353M Oct 16 21:58 gdtI0.f00228 -rw-rw-r-- 1 353M Oct 16 22:04 gdtI0.f00229 -rw-rw-r-- 1 353M Oct 16 22:10 gdtI0.f00230 -rw-rw-r-- 1 353M Oct 16 22:16 gdtI0.f00231 -rw-rw-r-- 1 353M Oct 16 22:22 gdtI0.f00232 -rw-rw-r-- 1 353M Oct 16 22:28 gdtI0.f00233 -rw-rw-r-- 1 353M Oct 16 22:34 gdtI0.f00234 -rw-rw-r-- 1 353M Oct 16 22:40 gdtI0.f00235 -rw-rw-r-- 1 353M Oct 16 22:46 gdtI0.f00236 -rw-rw-r-- 1 353M Oct 16 22:52 gdtI0.f00237 -rw-rw-r-- 1 353M Oct 16 22:58 gdtI0.f00238 -rw-rw-r-- 1 353M Oct 16 23:04 gdtI0.f00239 -rw-rw-r-- 1 353M Oct 16 23:10 gdtI0.f00240 -rw-rw-r-- 1 353M Oct 16 23:16 gdtI0.f00241 -rw-rw-r-- 1 353M Oct 16 23:22 gdtI0.f00242 -rw-rw-r-- 1 353M Oct 16 23:28 gdtI0.f00243 -rw-rw-r-- 1 353M Oct 16 23:34 gdtI0.f00244 -rw-rw-r-- 1 353M Oct 16 23:40 gdtI0.f00245 -rw-rw-r-- 1 353M Oct 16 23:46 gdtI0.f00246 -rw-rw-r-- 1 353M Oct 16 23:52 gdtI0.f00247 -rw-rw-r-- 1 353M Oct 16 23:58 gdtI0.f00248 -rw-rw-r-- 1 353M Oct 17 00:04 gdtI0.f00249 -rw-rw-r-- 1 353M Oct 17 00:10 gdtI0.f00250 -rw-rw-r-- 1 353M Oct 17 00:16 gdtI0.f00251 -rw-rw-r-- 1 353M Oct 17 00:22 gdtI0.f00252 -rw-rw-r-- 1 353M Oct 17 00:28 gdtI0.f00253 -rw-rw-r-- 1 353M Oct 17 00:34 gdtI0.f00254 -rw-rw-r-- 1 353M Oct 17 00:40 gdtI0.f00255 -rw-rw-r-- 1 353M Oct 17 00:46 gdtI0.f00256 -rw-rw-r-- 1 353M Oct 17 00:52 gdtI0.f00257 -rw-rw-r-- 1 353M Oct 17 00:58 gdtI0.f00258 -rw-rw-r-- 1 353M Oct 17 01:04 gdtI0.f00259 -rw-rw-r-- 1 353M Oct 17 01:10 gdtI0.f00260 -rw-rw-r-- 1 353M Oct 17 01:16 gdtI0.f00261 -rw-rw-r-- 1 353M Oct 17 01:22 gdtI0.f00262 -rw-rw-r-- 1 353M Oct 17 01:28 gdtI0.f00263 -rw-rw-r-- 1 353M Oct 17 01:34 gdtI0.f00264 -rw-rw-r-- 1 353M Oct 17 01:40 gdtI0.f00265 -rw-rw-r-- 1 353M Oct 17 01:46 gdtI0.f00266 -rw-rw-r-- 1 353M Oct 17 01:52 gdtI0.f00267 -rw-rw-r-- 1 353M Oct 17 01:58 gdtI0.f00268 -rw-rw-r-- 1 353M Oct 17 02:04 gdtI0.f00269 -rw-rw-r-- 1 353M Oct 17 02:10 gdtI0.f00270 -rw-rw-r-- 1 353M Oct 17 02:16 gdtI0.f00271 -rw-rw-r-- 1 353M Oct 17 02:22 gdtI0.f00272 -rw-rw-r-- 1 353M Oct 17 02:28 gdtI0.f00273 -rw-rw-r-- 1 353M Oct 17 02:34 gdtI0.f00274 -rw-rw-r-- 1 353M Oct 17 02:40 gdtI0.f00275 -rw-rw-r-- 1 353M Oct 17 02:46 gdtI0.f00276 -rw-rw-r-- 1 353M Oct 17 02:52 gdtI0.f00277 -rw-rw-r-- 1 353M Oct 17 02:58 gdtI0.f00278 -rw-rw-r-- 1 353M Oct 17 03:04 gdtI0.f00279 -rw-rw-r-- 1 353M Oct 17 03:10 gdtI0.f00280 -rw-rw-r-- 1 353M Oct 17 03:16 gdtI0.f00281 -rw-rw-r-- 1 353M Oct 17 03:22 gdtI0.f00282 -rw-rw-r-- 1 353M Oct 17 03:28 gdtI0.f00283 -rw-rw-r-- 1 353M Oct 17 03:34 gdtI0.f00284 -rw-rw-r-- 1 353M Oct 17 03:40 gdtI0.f00285 -rw-rw-r-- 1 353M Oct 17 03:46 gdtI0.f00286 -rw-rw-r-- 1 353M Oct 17 03:52 gdtI0.f00287 -rw-rw-r-- 1 353M Oct 17 03:58 gdtI0.f00288 -rw-rw-r-- 1 353M Oct 17 04:04 gdtI0.f00289 -rw-rw-r-- 1 353M Oct 17 04:10 gdtI0.f00290 -rw-rw-r-- 1 353M Oct 17 04:16 gdtI0.f00291 -rw-rw-r-- 1 353M Oct 17 04:22 gdtI0.f00292 -rw-rw-r-- 1 353M Oct 17 04:28 gdtI0.f00293 -rw-rw-r-- 1 353M Oct 17 04:34 gdtI0.f00294 -rw-rw-r-- 1 353M Oct 17 04:40 gdtI0.f00295 -rw-rw-r-- 1 353M Oct 17 04:46 gdtI0.f00296 -rw-rw-r-- 1 353M Oct 17 04:52 gdtI0.f00297 -rw-rw-r-- 1 353M Oct 17 04:58 gdtI0.f00298 -rw-rw-r-- 1 353M Oct 17 05:04 gdtI0.f00299 -rw-rw-r-- 1 353M Oct 17 05:10 gdtI0.f00300 -rw-rw-r-- 1 353M Oct 17 05:16 gdtI0.f00301 -rw-rw-r-- 1 353M Oct 17 05:22 gdtI0.f00302 -rw-rw-r-- 1 353M Oct 17 05:28 gdtI0.f00303 -rw-rw-r-- 1 353M Oct 17 05:34 gdtI0.f00304 -rw-rw-r-- 1 353M Oct 17 05:40 gdtI0.f00305 -rw-rw-r-- 1 353M Oct 17 05:46 gdtI0.f00306 -rw-rw-r-- 1 353M Oct 17 05:52 gdtI0.f00307 -rw-rw-r-- 1 353M Oct 17 05:58 gdtI0.f00308 -rw-rw-r-- 1 353M Oct 17 06:04 gdtI0.f00309 -rw-rw-r-- 1 353M Oct 17 06:10 gdtI0.f00310 -rw-rw-r-- 1 353M Oct 17 06:16 gdtI0.f00311 -rw-rw-r-- 1 353M Oct 17 06:22 gdtI0.f00312 -rw-rw-r-- 1 353M Oct 17 06:22 gdtI0.f00312 -rw-rw-r-- 1 353M Oct 17 06:28 gdtI0.f00313 -rw-rw-r-- 1 353M Oct 17 06:34 gdtI0.f00314 -rw-rw-r-- 1 353M Oct 17 06:40 gdtI0.f00315 -rw-rw-r-- 1 353M Oct 17 06:46 gdtI0.f00316 -rw-rw-r-- 1 377M Oct 17 06:52 hpts.out -rw-rw-r-- 1 353M Oct 17 06:52 gdtI0.f00317 -rw-rw-r-- 1 190M Oct 17 06:56 slurm-1134244.out -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Tue Oct 27 13:47:04 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Tue, 27 Oct 2015 21:47:04 +0300 Subject: [Nek5000-users] output through .rea and through usrchk In-Reply-To: References: Message-ID: Paul, thanks for the answer For param(12) I have in .rea -0.00100E-00 p012 DT So by putting il_hptsout=-0.5/param(12) in usrchk I wanted to ensure the output with timestep 0.5, and I don't see problem here. This simulation had been running for 52 hours on 1024 cores and ended with node falure slurmd[node1-057-01]: *** JOB 1134244 CANCELLED AT 2015-10-17T06:56:44 DUE TO NODE FAILURE *** So may be it was something wrong on cluster, but I don't understand why gdt* files (through outpost in usrchk) and hpts.out are OK. For me it is also annoying since I wanted to continue this simulation, but I can only do so with unmodified field output. So I had to restart it from beginning. Thank you, Ilias P.S. Below is the beginning of .rea file ****** PARAMETERS ***** 2.60999990 NEKTON VERSION 2 DIMENSIONAL RUN 120 PARAMETERS FOLLOW 1.00000 p001 DENSITY 0.103000E-01 p002 VISCOS 0.00000 p003 -1.00000 p004 p04 Froude^2 0.00000 p005 0.00000 p006 1.00000 p007 RHOCP 0.144000E-04 p008 CONDUCT 0.00000 p009 9.00000E+03 p010 FINTIME 0.100000E+10 p011 NSTEPS -0.010000E-01 p012 DT 0.00000 p013 IOCOMM 0.50000 p014 IOTIME 0000000 p015 IOSTEP 0.00000 p016 PSSOLVER: 0=default 0.00000 p017 0.00000 p018 GRID < 0 --> # cells on screen 0.00000 p019 INTYPE 0.00000 p020 NORDER 0.100000E-05 p021 DIVERGENCE 0.100000E-08 p022 HELMHOLTZ 0 p23 NPSCAL 0.100000E-09 p024 TOLREL 0.100000E-09 p025 TOLABS 2.00000 p026 COURANT/NTAU 2.00000 p027 TORDER 0.00000 p028 TORDER: mesh velocity (0: p28=p27) 0.00000 p029 = magnetic visc if > 0, = -1/Rm if < 0 0.00000 p030 > 0 ==> properties set in uservp() 0.00000 p031 NPERT: #perturbation modes 0.00000 p032 #BCs in re2 file, if > 0 0.00000 p033 0.00000 p034 0.00000 p035 0.00000 p036 0.00000 p037 0.00000 p038 0.00000 p039 0.00000 p040 0.00000 p041 1-->multiplicative SEMG 0.00000 p042 0=gmres/1=pcg 1.00000 p043 0=semg/1=schwarz 0.00000 p044 0=E-based/1=A-based prec. 0.00000 p045 Relaxation factor for DTFS 0.00000 p046 reserved 0.00000 p047 vnu: mesh matieral prop. 0.00000 p048 0.00000 p049 0.00000 p050 0.00000 p051 0.00000 p052 IOHIS 0.00000 p053 0.00000 p054 fixed flow rate dir: |p54|=1,2,3=x,y,z 0.00000 p055 vol.flow rate (p54>0) or Ubar (p54<0) 0.00000 p056 0.00000 p057 0.00000 p058 0.00000 p059 !=0 --> full Jac. eval. for each el. 0.00000 p060 !=0 --> init. velocity to small nonzero 0.00000 p061 0.00000 p062 >0 --> force byte_swap for output 0.00000 p063 =8 --> force 8-byte output 0.00000 p064 =1 --> perturbation restart 1.00000 p065 #iofiles (eg, 0 or 64); <0 --> sep. dirs 6.00000 p066 output : <0=ascii, else binary 6.00000 p067 restart: <0=ascii, else binary 0.00000 p068 iastep: freq for avg_all (0=iostep) 0.00000 p069 0.00000 p070 0.00000 p071 0.00000 p072 0.00000 p073 0.00000 p074 verbose Helmholtz 0.00000 p075 0.00000 p076 0.00000 p077 0.00000 p078 0.00000 p079 0.00000 p080 0.00000 p081 0.00000 p082 0.00000 p083 0.00000 p084 !=0 --> sets initial timestep if p12>0 0.00000 p085 dt ratio if p84 !=0, for timesteps>0 0.00000 p086 reserved 0.00000 p087 0.00000 p088 0.00000 p089 p89 reserved 0.00000 p090 0.00000 p091 0.00000 p092 50.0000 p093 Number of previous pressure solns saved 5.00000 p094 start projecting velocity after p94 step 5.00000 p095 start projecting pressure after p95 step 0.00000 p096 0.00000 p097 0.00000 p098 3.00000 p099 dealiasing: <0--> off/3--> old/4--> new 0.00000 p100 1.00000 p101 Number of additional modes to filter 0.00000 p102 Dump out divergence at each time step 0.05000 p103 weight of stabilizing filter (.01) 0.00000 p104 0.00000 p105 0.00000 p106 0.00000 p107 !=0 --> add to h2 array in hlmhotz eqn 0.00000 p108 0.00000 p109 0.00000 p110 0.00000 p111 0.00000 p112 0.00000 p113 0.00000 p114 0.00000 p115 0.00000 p116 !=0: x elements for fast tensor product 0.00000 p117 !=0: y elements for fast tensor product 0.00000 p118 !=0: z elements for fast tensor product 0.00000 p119 p119 0.00000 p120 p120 4 Lines of passive scalar data follows2 CONDUCT; 2RHOCP 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 13 LOGICAL SWITCHES FOLLOW T IFFLOW T IFHEAT T IFTRAN T T F F F F F F F F F IFNAV & IFADVC (convection in P.S. fields) F F T T T T T T T T T T IFTMSH (IF mesh for this field is T mesh) F IFAXIS F IFSTRS F IFSPLIT F IFMGRID F IFMODEL F IFKEPS F IFMVBD T IFCHAR 100.000 100.000 -20.0000 -30.0000 XFAC,YFAC,XZERO,YZERO **MESH DATA** 1st line is X of corner 1,2,3,4. 2nd line is Y. 360000 2 360000 NEL,NDIM,NELV ... 0 PRESOLVE/RESTART OPTIONS ***** 7 INITIAL CONDITIONS ***** C Default C Default C Default C Default C Default C Default C Default ***** DRIVE FORCE DATA ***** BODY FORCE, FLOW, Q 4 Lines of Drive force data follow C C C C ***** Variable Property Data ***** Overrrides Parameter data. 1 Lines follow. 0 PACKETS OF DATA FOLLOW ***** HISTORY AND INTEGRAL DATA ***** 0 POINTS. Hcode, I,J,H,IEL ***** OUTPUT FIELD SPECIFICATION ***** 6 SPECIFICATIONS FOLLOW F COORDINATES T VELOCITY F PRESSURE T TEMPERATURE F TEMPERATURE GRADIENT 0 PASSIVE SCALARS ***** OBJECT SPECIFICATION ***** 0 Surface Objects 0 Volume Objects 0 Edge Objects 0 Point Objects 3960173,8 Bot On Tue, Oct 27, 2015 at 3:23 PM, wrote: > > There is an issue that you don't know for certain the sign of param(12)... > so I would check > to be sure to clean up your integer il_hptsout. > > To me, however, it's not clear that that issue alone would be causing the > problem. > > Paul > > > ------------------------------ > *From:* nek5000-users-bounces at lists.mcs.anl.gov [ > nek5000-users-bounces at lists.mcs.anl.gov] on behalf of > nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] > *Sent:* Tuesday, October 27, 2015 6:33 AM > *To:* nek5000-users at lists.mcs.anl.gov > *Subject:* [Nek5000-users] output through .rea and through usrchk > > Dear neks, > > Strange thing happend to a simulation where > I made "standart" output through .rea file, > i.e. > -0.010000E-01 p012 DT > 0.00000 p013 IOCOMM > 0.50000 p014 IOTIME > and at the same time I need scalar gradients, so I've put to usrchk: > > il_hptsout=-0.5/param(12) > > if ((istep.gt.0).and.(mod(istep,il_hptsout).eq.0)) then > call gradm1(dtdx,dtdy,dtdz,t) > call outpost(dtdx,dtdy,dtdz,pr,t,'gdt') > endif > > The strange thing that gdt* (from usrchk) files are saved as should > should be, > but "standart" CASE0.f* were saved onli partially, below is 'ls -rt' of > the case directory. > Why whould that happen? may it be cluster issue? (file sizes are not small > ~530mb) > > -rw-rw-r-- 1 35K Oct 15 02:52 compiler.out > -rw-rw-r-- 1 99 Oct 15 02:55 SESSION.NAME > -rw-rw-r-- 1 52 Oct 15 02:55 lognekbmpi.txt > -rw-rw-r-- 1 353M Oct 15 03:54 gdtI0.f00001 > -rw-rw-r-- 1 353M Oct 15 04:51 gdtI0.f00002 > -rw-rw-r-- 1 353M Oct 15 05:29 gdtI0.f00003 > -rw-rw-r-- 1 529M Oct 15 05:29 I0.f00001 > -rw-rw-r-- 1 353M Oct 15 06:07 gdtI0.f00004 > -rw-rw-r-- 1 529M Oct 15 06:07 I0.f00002 > -rw-rw-r-- 1 353M Oct 15 06:39 gdtI0.f00005 > -rw-rw-r-- 1 529M Oct 15 06:39 I0.f00003 > -rw-rw-r-- 1 353M Oct 15 08:23 gdtI0.f00006 > -rw-rw-r-- 1 529M Oct 15 08:23 I0.f00004 > -rw-rw-r-- 1 353M Oct 15 09:29 gdtI0.f00007 > -rw-rw-r-- 1 529M Oct 15 09:29 I0.f00005 > -rw-rw-r-- 1 353M Oct 15 10:11 gdtI0.f00008 > -rw-rw-r-- 1 529M Oct 15 10:12 I0.f00006 > -rw-rw-r-- 1 353M Oct 15 10:57 gdtI0.f00009 > -rw-rw-r-- 1 529M Oct 15 10:58 I0.f00007 > -rw-rw-r-- 1 353M Oct 15 11:49 gdtI0.f00010 > -rw-rw-r-- 1 353M Oct 15 12:41 gdtI0.f00011 > -rw-rw-r-- 1 353M Oct 15 13:12 gdtI0.f00012 > -rw-rw-r-- 1 353M Oct 15 13:48 gdtI0.f00013 > -rw-rw-r-- 1 353M Oct 15 14:28 gdtI0.f00014 > -rw-rw-r-- 1 353M Oct 15 15:01 gdtI0.f00015 > -rw-rw-r-- 1 353M Oct 15 16:34 gdtI0.f00016 > -rw-rw-r-- 1 353M Oct 15 18:18 gdtI0.f00017 > -rw-rw-r-- 1 353M Oct 15 21:07 gdtI0.f00018 > -rw-rw-r-- 1 353M Oct 15 21:13 gdtI0.f00019 > -rw-rw-r-- 1 353M Oct 15 21:19 gdtI0.f00020 > -rw-rw-r-- 1 529M Oct 15 21:19 I0.f00008 > -rw-rw-r-- 1 353M Oct 15 21:25 gdtI0.f00021 > -rw-rw-r-- 1 529M Oct 15 21:25 I0.f00009 > -rw-rw-r-- 1 353M Oct 15 21:31 gdtI0.f00022 > -rw-rw-r-- 1 529M Oct 15 21:31 I0.f00010 > -rw-rw-r-- 1 353M Oct 15 21:37 gdtI0.f00023 > -rw-rw-r-- 1 529M Oct 15 21:37 I0.f00011 > -rw-rw-r-- 1 353M Oct 15 21:43 gdtI0.f00024 > -rw-rw-r-- 1 529M Oct 15 21:43 I0.f00012 > -rw-rw-r-- 1 353M Oct 15 21:49 gdtI0.f00025 > -rw-rw-r-- 1 529M Oct 15 21:50 I0.f00013 > -rw-rw-r-- 1 353M Oct 15 21:56 gdtI0.f00026 > -rw-rw-r-- 1 529M Oct 15 21:56 I0.f00014 > -rw-rw-r-- 1 353M Oct 15 22:02 gdtI0.f00027 > -rw-rw-r-- 1 529M Oct 15 22:02 I0.f00015 > -rw-rw-r-- 1 353M Oct 15 22:08 gdtI0.f00028 > -rw-rw-r-- 1 529M Oct 15 22:08 I0.f00016 > -rw-rw-r-- 1 353M Oct 15 22:14 gdtI0.f00029 > -rw-rw-r-- 1 529M Oct 15 22:14 I0.f00017 > -rw-rw-r-- 1 353M Oct 15 22:20 gdtI0.f00030 > -rw-rw-r-- 1 529M Oct 15 22:20 I0.f00018 > -rw-rw-r-- 1 353M Oct 15 22:26 gdtI0.f00031 > -rw-rw-r-- 1 529M Oct 15 22:26 I0.f00019 > -rw-rw-r-- 1 353M Oct 15 22:32 gdtI0.f00032 > -rw-rw-r-- 1 529M Oct 15 22:32 I0.f00020 > -rw-rw-r-- 1 353M Oct 15 22:38 gdtI0.f00033 > -rw-rw-r-- 1 529M Oct 15 22:38 I0.f00021 > -rw-rw-r-- 1 353M Oct 15 22:44 gdtI0.f00034 > -rw-rw-r-- 1 529M Oct 15 22:44 I0.f00022 > -rw-rw-r-- 1 353M Oct 15 22:50 gdtI0.f00035 > -rw-rw-r-- 1 529M Oct 15 22:50 I0.f00023 > -rw-rw-r-- 1 353M Oct 15 22:56 gdtI0.f00036 > -rw-rw-r-- 1 529M Oct 15 22:56 I0.f00024 > -rw-rw-r-- 1 353M Oct 15 23:02 gdtI0.f00037 > -rw-rw-r-- 1 529M Oct 15 23:02 I0.f00025 > -rw-rw-r-- 1 353M Oct 15 23:08 gdtI0.f00038 > -rw-rw-r-- 1 353M Oct 15 23:14 gdtI0.f00039 > -rw-rw-r-- 1 353M Oct 15 23:20 gdtI0.f00040 > -rw-rw-r-- 1 353M Oct 15 23:26 gdtI0.f00041 > -rw-rw-r-- 1 353M Oct 15 23:32 gdtI0.f00042 > -rw-rw-r-- 1 353M Oct 15 23:38 gdtI0.f00043 > -rw-rw-r-- 1 353M Oct 15 23:44 gdtI0.f00044 > -rw-rw-r-- 1 353M Oct 15 23:50 gdtI0.f00045 > -rw-rw-r-- 1 353M Oct 15 23:56 gdtI0.f00046 > -rw-rw-r-- 1 353M Oct 16 00:01 gdtI0.f00047 > -rw-rw-r-- 1 353M Oct 16 00:07 gdtI0.f00048 > -rw-rw-r-- 1 353M Oct 16 00:13 gdtI0.f00049 > -rw-rw-r-- 1 353M Oct 16 00:19 gdtI0.f00050 > -rw-rw-r-- 1 353M Oct 16 00:25 gdtI0.f00051 > -rw-rw-r-- 1 353M Oct 16 00:31 gdtI0.f00052 > -rw-rw-r-- 1 353M Oct 16 00:37 gdtI0.f00053 > -rw-rw-r-- 1 353M Oct 16 00:43 gdtI0.f00054 > -rw-rw-r-- 1 353M Oct 16 00:49 gdtI0.f00055 > -rw-rw-r-- 1 353M Oct 16 00:55 gdtI0.f00056 > -rw-rw-r-- 1 353M Oct 16 01:01 gdtI0.f00057 > -rw-rw-r-- 1 353M Oct 16 01:07 gdtI0.f00058 > -rw-rw-r-- 1 353M Oct 16 01:13 gdtI0.f00059 > -rw-rw-r-- 1 353M Oct 16 01:19 gdtI0.f00060 > -rw-rw-r-- 1 353M Oct 16 01:25 gdtI0.f00061 > -rw-rw-r-- 1 353M Oct 16 01:31 gdtI0.f00062 > -rw-rw-r-- 1 353M Oct 16 01:36 gdtI0.f00063 > -rw-rw-r-- 1 353M Oct 16 01:42 gdtI0.f00064 > -rw-rw-r-- 1 353M Oct 16 01:48 gdtI0.f00065 > -rw-rw-r-- 1 353M Oct 16 01:54 gdtI0.f00066 > -rw-rw-r-- 1 353M Oct 16 02:00 gdtI0.f00067 > -rw-rw-r-- 1 353M Oct 16 02:06 gdtI0.f00068 > -rw-rw-r-- 1 353M Oct 16 02:12 gdtI0.f00069 > -rw-rw-r-- 1 353M Oct 16 02:18 gdtI0.f00070 > -rw-rw-r-- 1 353M Oct 16 02:24 gdtI0.f00071 > -rw-rw-r-- 1 353M Oct 16 02:30 gdtI0.f00072 > -rw-rw-r-- 1 353M Oct 16 02:36 gdtI0.f00073 > -rw-rw-r-- 1 353M Oct 16 02:42 gdtI0.f00074 > -rw-rw-r-- 1 353M Oct 16 02:48 gdtI0.f00075 > -rw-rw-r-- 1 353M Oct 16 02:54 gdtI0.f00076 > -rw-rw-r-- 1 353M Oct 16 03:00 gdtI0.f00077 > -rw-rw-r-- 1 353M Oct 16 03:06 gdtI0.f00078 > -rw-rw-r-- 1 529M Oct 16 03:06 I0.f00026 > -rw-rw-r-- 1 353M Oct 16 03:12 gdtI0.f00079 > -rw-rw-r-- 1 529M Oct 16 03:12 I0.f00027 > -rw-rw-r-- 1 353M Oct 16 03:18 gdtI0.f00080 > -rw-rw-r-- 1 529M Oct 16 03:18 I0.f00028 > -rw-rw-r-- 1 353M Oct 16 03:24 gdtI0.f00081 > -rw-rw-r-- 1 529M Oct 16 03:25 I0.f00029 > -rw-rw-r-- 1 353M Oct 16 03:31 gdtI0.f00082 > -rw-rw-r-- 1 529M Oct 16 03:31 I0.f00030 > -rw-rw-r-- 1 353M Oct 16 03:37 gdtI0.f00083 > -rw-rw-r-- 1 529M Oct 16 03:37 I0.f00031 > -rw-rw-r-- 1 353M Oct 16 03:43 gdtI0.f00084 > -rw-rw-r-- 1 529M Oct 16 03:44 I0.f00032 > -rw-rw-r-- 1 353M Oct 16 03:50 gdtI0.f00085 > -rw-rw-r-- 1 529M Oct 16 03:50 I0.f00033 > -rw-rw-r-- 1 353M Oct 16 03:56 gdtI0.f00086 > -rw-rw-r-- 1 529M Oct 16 03:56 I0.f00034 > -rw-rw-r-- 1 353M Oct 16 04:02 gdtI0.f00087 > -rw-rw-r-- 1 529M Oct 16 04:02 I0.f00035 > -rw-rw-r-- 1 353M Oct 16 04:08 gdtI0.f00088 > -rw-rw-r-- 1 529M Oct 16 04:08 I0.f00036 > -rw-rw-r-- 1 353M Oct 16 04:14 gdtI0.f00089 > -rw-rw-r-- 1 529M Oct 16 04:14 I0.f00037 > -rw-rw-r-- 1 353M Oct 16 04:20 gdtI0.f00090 > -rw-rw-r-- 1 529M Oct 16 04:21 I0.f00038 > -rw-rw-r-- 1 353M Oct 16 04:27 gdtI0.f00091 > -rw-rw-r-- 1 529M Oct 16 04:27 I0.f00039 > -rw-rw-r-- 1 353M Oct 16 04:33 gdtI0.f00092 > -rw-rw-r-- 1 529M Oct 16 04:33 I0.f00040 > -rw-rw-r-- 1 353M Oct 16 04:39 gdtI0.f00093 > -rw-rw-r-- 1 529M Oct 16 04:39 I0.f00041 > -rw-rw-r-- 1 353M Oct 16 04:45 gdtI0.f00094 > -rw-rw-r-- 1 529M Oct 16 04:45 I0.f00042 > -rw-rw-r-- 1 353M Oct 16 04:51 gdtI0.f00095 > -rw-rw-r-- 1 529M Oct 16 04:52 I0.f00043 > -rw-rw-r-- 1 353M Oct 16 04:58 gdtI0.f00096 > -rw-rw-r-- 1 529M Oct 16 04:58 I0.f00044 > -rw-rw-r-- 1 353M Oct 16 05:04 gdtI0.f00097 > -rw-rw-r-- 1 529M Oct 16 05:04 I0.f00045 > -rw-rw-r-- 1 353M Oct 16 05:10 gdtI0.f00098 > -rw-rw-r-- 1 529M Oct 16 05:11 I0.f00046 > -rw-rw-r-- 1 353M Oct 16 05:17 gdtI0.f00099 > -rw-rw-r-- 1 529M Oct 16 05:17 I0.f00047 > -rw-rw-r-- 1 353M Oct 16 05:23 gdtI0.f00100 > -rw-rw-r-- 1 529M Oct 16 05:23 I0.f00048 > -rw-rw-r-- 1 353M Oct 16 05:29 gdtI0.f00101 > -rw-rw-r-- 1 529M Oct 16 05:29 I0.f00049 > -rw-rw-r-- 1 353M Oct 16 05:35 gdtI0.f00102 > -rw-rw-r-- 1 529M Oct 16 05:35 I0.f00050 > -rw-rw-r-- 1 353M Oct 16 05:41 gdtI0.f00103 > -rw-rw-r-- 1 529M Oct 16 05:41 I0.f00051 > -rw-rw-r-- 1 353M Oct 16 05:47 gdtI0.f00104 > -rw-rw-r-- 1 529M Oct 16 05:48 I0.f00052 > -rw-rw-r-- 1 353M Oct 16 05:54 gdtI0.f00105 > -rw-rw-r-- 1 529M Oct 16 05:54 I0.f00053 > -rw-rw-r-- 1 353M Oct 16 06:00 gdtI0.f00106 > -rw-rw-r-- 1 529M Oct 16 06:00 I0.f00054 > -rw-rw-r-- 1 353M Oct 16 06:06 gdtI0.f00107 > -rw-rw-r-- 1 529M Oct 16 06:06 I0.f00055 > -rw-rw-r-- 1 353M Oct 16 06:12 gdtI0.f00108 > -rw-rw-r-- 1 529M Oct 16 06:13 I0.f00056 > -rw-rw-r-- 1 353M Oct 16 06:18 gdtI0.f00109 > -rw-rw-r-- 1 529M Oct 16 06:19 I0.f00057 > -rw-rw-r-- 1 353M Oct 16 06:24 gdtI0.f00110 > -rw-rw-r-- 1 529M Oct 16 06:25 I0.f00058 > -rw-rw-r-- 1 353M Oct 16 06:31 gdtI0.f00111 > -rw-rw-r-- 1 529M Oct 16 06:31 I0.f00059 > -rw-rw-r-- 1 353M Oct 16 06:37 gdtI0.f00112 > -rw-rw-r-- 1 529M Oct 16 06:37 I0.f00060 > -rw-rw-r-- 1 353M Oct 16 06:43 gdtI0.f00113 > -rw-rw-r-- 1 529M Oct 16 06:44 I0.f00061 > -rw-rw-r-- 1 353M Oct 16 06:50 gdtI0.f00114 > -rw-rw-r-- 1 529M Oct 16 06:50 I0.f00062 > -rw-rw-r-- 1 353M Oct 16 06:56 gdtI0.f00115 > -rw-rw-r-- 1 529M Oct 16 06:56 I0.f00063 > -rw-rw-r-- 1 353M Oct 16 07:02 gdtI0.f00116 > -rw-rw-r-- 1 529M Oct 16 07:02 I0.f00064 > -rw-rw-r-- 1 353M Oct 16 07:08 gdtI0.f00117 > -rw-rw-r-- 1 529M Oct 16 07:08 I0.f00065 > -rw-rw-r-- 1 353M Oct 16 07:14 gdtI0.f00118 > -rw-rw-r-- 1 529M Oct 16 07:14 I0.f00066 > -rw-rw-r-- 1 353M Oct 16 07:20 gdtI0.f00119 > -rw-rw-r-- 1 529M Oct 16 07:20 I0.f00067 > -rw-rw-r-- 1 353M Oct 16 07:26 gdtI0.f00120 > -rw-rw-r-- 1 529M Oct 16 07:26 I0.f00068 > -rw-rw-r-- 1 353M Oct 16 07:32 gdtI0.f00121 > -rw-rw-r-- 1 529M Oct 16 07:32 I0.f00069 > -rw-rw-r-- 1 353M Oct 16 07:38 gdtI0.f00122 > -rw-rw-r-- 1 529M Oct 16 07:38 I0.f00070 > -rw-rw-r-- 1 353M Oct 16 07:44 gdtI0.f00123 > -rw-rw-r-- 1 529M Oct 16 07:44 I0.f00071 > -rw-rw-r-- 1 353M Oct 16 07:50 gdtI0.f00124 > -rw-rw-r-- 1 529M Oct 16 07:50 I0.f00072 > -rw-rw-r-- 1 353M Oct 16 07:56 gdtI0.f00125 > -rw-rw-r-- 1 529M Oct 16 07:56 I0.f00073 > -rw-rw-r-- 1 353M Oct 16 08:02 gdtI0.f00126 > -rw-rw-r-- 1 529M Oct 16 08:02 I0.f00074 > -rw-rw-r-- 1 353M Oct 16 08:08 gdtI0.f00127 > -rw-rw-r-- 1 529M Oct 16 08:08 I0.f00075 > -rw-rw-r-- 1 353M Oct 16 08:14 gdtI0.f00128 > -rw-rw-r-- 1 529M Oct 16 08:14 I0.f00076 > -rw-rw-r-- 1 353M Oct 16 08:20 gdtI0.f00129 > -rw-rw-r-- 1 529M Oct 16 08:21 I0.f00077 > -rw-rw-r-- 1 529M Oct 16 08:14 I0.f00076 > -rw-rw-r-- 1 353M Oct 16 08:20 gdtI0.f00129 > -rw-rw-r-- 1 529M Oct 16 08:21 I0.f00077 > -rw-rw-r-- 1 353M Oct 16 08:26 gdtI0.f00130 > -rw-rw-r-- 1 529M Oct 16 08:27 I0.f00078 > -rw-rw-r-- 1 353M Oct 16 08:32 gdtI0.f00131 > -rw-rw-r-- 1 529M Oct 16 08:33 I0.f00079 > -rw-rw-r-- 1 353M Oct 16 08:39 gdtI0.f00132 > -rw-rw-r-- 1 529M Oct 16 08:39 I0.f00080 > -rw-rw-r-- 1 353M Oct 16 08:45 gdtI0.f00133 > -rw-rw-r-- 1 529M Oct 16 08:45 I0.f00081 > -rw-rw-r-- 1 353M Oct 16 08:51 gdtI0.f00134 > -rw-rw-r-- 1 529M Oct 16 08:51 I0.f00082 > -rw-rw-r-- 1 353M Oct 16 08:57 gdtI0.f00135 > -rw-rw-r-- 1 529M Oct 16 08:57 I0.f00083 > -rw-rw-r-- 1 353M Oct 16 09:03 gdtI0.f00136 > -rw-rw-r-- 1 529M Oct 16 09:03 I0.f00084 > -rw-rw-r-- 1 353M Oct 16 09:09 gdtI0.f00137 > -rw-rw-r-- 1 529M Oct 16 09:09 I0.f00085 > -rw-rw-r-- 1 353M Oct 16 09:15 gdtI0.f00138 > -rw-rw-r-- 1 529M Oct 16 09:15 I0.f00086 > -rw-rw-r-- 1 353M Oct 16 09:21 gdtI0.f00139 > -rw-rw-r-- 1 529M Oct 16 09:22 I0.f00087 > -rw-rw-r-- 1 353M Oct 16 09:27 gdtI0.f00140 > -rw-rw-r-- 1 529M Oct 16 09:28 I0.f00088 > -rw-rw-r-- 1 353M Oct 16 09:33 gdtI0.f00141 > -rw-rw-r-- 1 529M Oct 16 09:34 I0.f00089 > -rw-rw-r-- 1 353M Oct 16 09:40 gdtI0.f00142 > -rw-rw-r-- 1 529M Oct 16 09:40 I0.f00090 > -rw-rw-r-- 1 353M Oct 16 09:46 gdtI0.f00143 > -rw-rw-r-- 1 529M Oct 16 09:46 I0.f00091 > -rw-rw-r-- 1 353M Oct 16 09:52 gdtI0.f00144 > -rw-rw-r-- 1 529M Oct 16 09:52 I0.f00092 > -rw-rw-r-- 1 353M Oct 16 09:57 gdtI0.f00145 > -rw-rw-r-- 1 529M Oct 16 09:58 I0.f00093 > -rw-rw-r-- 1 353M Oct 16 10:03 gdtI0.f00146 > -rw-rw-r-- 1 529M Oct 16 10:04 I0.f00094 > -rw-rw-r-- 1 353M Oct 16 10:09 gdtI0.f00147 > -rw-rw-r-- 1 529M Oct 16 10:10 I0.f00095 > -rw-rw-r-- 1 353M Oct 16 10:15 gdtI0.f00148 > -rw-rw-r-- 1 529M Oct 16 10:16 I0.f00096 > -rw-rw-r-- 1 353M Oct 16 10:21 gdtI0.f00149 > -rw-rw-r-- 1 529M Oct 16 10:22 I0.f00097 > -rw-rw-r-- 1 353M Oct 16 10:27 gdtI0.f00150 > -rw-rw-r-- 1 529M Oct 16 10:28 I0.f00098 > -rw-rw-r-- 1 353M Oct 16 10:33 gdtI0.f00151 > -rw-rw-r-- 1 529M Oct 16 10:34 I0.f00099 > -rw-rw-r-- 1 353M Oct 16 10:39 gdtI0.f00152 > -rw-rw-r-- 1 529M Oct 16 10:40 I0.f00100 > -rw-rw-r-- 1 353M Oct 16 10:46 gdtI0.f00153 > -rw-rw-r-- 1 353M Oct 16 10:52 gdtI0.f00154 > -rw-rw-r-- 1 353M Oct 16 10:57 gdtI0.f00155 > -rw-rw-r-- 1 353M Oct 16 11:03 gdtI0.f00156 > -rw-rw-r-- 1 353M Oct 16 11:09 gdtI0.f00157 > -rw-rw-r-- 1 353M Oct 16 11:15 gdtI0.f00158 > -rw-rw-r-- 1 353M Oct 16 11:21 gdtI0.f00159 > -rw-rw-r-- 1 353M Oct 16 11:27 gdtI0.f00160 > -rw-rw-r-- 1 353M Oct 16 11:33 gdtI0.f00161 > -rw-rw-r-- 1 353M Oct 16 11:39 gdtI0.f00162 > -rw-rw-r-- 1 353M Oct 16 11:45 gdtI0.f00163 > -rw-rw-r-- 1 353M Oct 16 11:51 gdtI0.f00164 > -rw-rw-r-- 1 353M Oct 16 11:57 gdtI0.f00165 > -rw-rw-r-- 1 353M Oct 16 12:03 gdtI0.f00166 > -rw-rw-r-- 1 353M Oct 16 12:09 gdtI0.f00167 > -rw-rw-r-- 1 353M Oct 16 12:15 gdtI0.f00168 > -rw-rw-r-- 1 353M Oct 16 12:21 gdtI0.f00169 > -rw-rw-r-- 1 353M Oct 16 12:27 gdtI0.f00170 > -rw-rw-r-- 1 353M Oct 16 12:33 gdtI0.f00171 > -rw-rw-r-- 1 353M Oct 16 12:39 gdtI0.f00172 > -rw-rw-r-- 1 353M Oct 16 12:45 gdtI0.f00173 > -rw-rw-r-- 1 353M Oct 16 12:51 gdtI0.f00174 > -rw-rw-r-- 1 353M Oct 16 12:57 gdtI0.f00175 > -rw-rw-r-- 1 353M Oct 16 13:03 gdtI0.f00176 > -rw-rw-r-- 1 353M Oct 16 13:09 gdtI0.f00177 > -rw-rw-r-- 1 353M Oct 16 13:15 gdtI0.f00178 > -rw-rw-r-- 1 353M Oct 16 13:21 gdtI0.f00179 > -rw-rw-r-- 1 353M Oct 16 13:27 gdtI0.f00180 > -rw-rw-r-- 1 353M Oct 16 13:33 gdtI0.f00181 > -rw-rw-r-- 1 353M Oct 16 13:39 gdtI0.f00182 > -rw-rw-r-- 1 353M Oct 16 13:45 gdtI0.f00183 > -rw-rw-r-- 1 353M Oct 16 13:51 gdtI0.f00184 > -rw-rw-r-- 1 353M Oct 16 13:57 gdtI0.f00185 > -rw-rw-r-- 1 353M Oct 16 14:03 gdtI0.f00186 > -rw-rw-r-- 1 353M Oct 16 14:09 gdtI0.f00187 > -rw-rw-r-- 1 353M Oct 16 14:15 gdtI0.f00188 > -rw-rw-r-- 1 353M Oct 16 14:21 gdtI0.f00189 > -rw-rw-r-- 1 353M Oct 16 14:27 gdtI0.f00190 > -rw-rw-r-- 1 353M Oct 16 14:33 gdtI0.f00191 > -rw-rw-r-- 1 353M Oct 16 14:39 gdtI0.f00192 > -rw-rw-r-- 1 353M Oct 16 15:42 gdtI0.f00193 > -rw-rw-r-- 1 353M Oct 16 16:34 gdtI0.f00194 > -rw-rw-r-- 1 353M Oct 16 17:34 gdtI0.f00195 > -rw-rw-r-- 1 353M Oct 16 18:32 gdtI0.f00196 > -rw-rw-r-- 1 353M Oct 16 18:52 gdtI0.f00197 > -rw-rw-r-- 1 353M Oct 16 18:58 gdtI0.f00198 > -rw-rw-r-- 1 353M Oct 16 19:04 gdtI0.f00199 > -rw-rw-r-- 1 353M Oct 16 19:10 gdtI0.f00200 > -rw-rw-r-- 1 353M Oct 16 19:16 gdtI0.f00201 > -rw-rw-r-- 1 353M Oct 16 19:22 gdtI0.f00202 > -rw-rw-r-- 1 353M Oct 16 19:28 gdtI0.f00203 > -rw-rw-r-- 1 353M Oct 16 19:34 gdtI0.f00204 > -rw-rw-r-- 1 353M Oct 16 19:40 gdtI0.f00205 > -rw-rw-r-- 1 353M Oct 16 19:46 gdtI0.f00206 > -rw-rw-r-- 1 353M Oct 16 19:52 gdtI0.f00207 > -rw-rw-r-- 1 353M Oct 16 19:58 gdtI0.f00208 > -rw-rw-r-- 1 353M Oct 16 19:58 gdtI0.f00208 > -rw-rw-r-- 1 353M Oct 16 20:04 gdtI0.f00209 > -rw-rw-r-- 1 353M Oct 16 20:10 gdtI0.f00210 > -rw-rw-r-- 1 353M Oct 16 20:16 gdtI0.f00211 > -rw-rw-r-- 1 353M Oct 16 20:22 gdtI0.f00212 > -rw-rw-r-- 1 353M Oct 16 20:28 gdtI0.f00213 > -rw-rw-r-- 1 353M Oct 16 20:34 gdtI0.f00214 > -rw-rw-r-- 1 353M Oct 16 20:40 gdtI0.f00215 > -rw-rw-r-- 1 353M Oct 16 20:46 gdtI0.f00216 > -rw-rw-r-- 1 353M Oct 16 20:52 gdtI0.f00217 > -rw-rw-r-- 1 353M Oct 16 20:58 gdtI0.f00218 > -rw-rw-r-- 1 353M Oct 16 21:04 gdtI0.f00219 > -rw-rw-r-- 1 353M Oct 16 21:10 gdtI0.f00220 > -rw-rw-r-- 1 353M Oct 16 21:16 gdtI0.f00221 > -rw-rw-r-- 1 353M Oct 16 21:22 gdtI0.f00222 > -rw-rw-r-- 1 353M Oct 16 21:28 gdtI0.f00223 > -rw-rw-r-- 1 353M Oct 16 21:34 gdtI0.f00224 > -rw-rw-r-- 1 353M Oct 16 21:40 gdtI0.f00225 > -rw-rw-r-- 1 353M Oct 16 21:46 gdtI0.f00226 > -rw-rw-r-- 1 353M Oct 16 21:52 gdtI0.f00227 > -rw-rw-r-- 1 353M Oct 16 21:58 gdtI0.f00228 > -rw-rw-r-- 1 353M Oct 16 22:04 gdtI0.f00229 > -rw-rw-r-- 1 353M Oct 16 22:10 gdtI0.f00230 > -rw-rw-r-- 1 353M Oct 16 22:16 gdtI0.f00231 > -rw-rw-r-- 1 353M Oct 16 22:22 gdtI0.f00232 > -rw-rw-r-- 1 353M Oct 16 22:28 gdtI0.f00233 > -rw-rw-r-- 1 353M Oct 16 22:34 gdtI0.f00234 > -rw-rw-r-- 1 353M Oct 16 22:40 gdtI0.f00235 > -rw-rw-r-- 1 353M Oct 16 22:46 gdtI0.f00236 > -rw-rw-r-- 1 353M Oct 16 22:52 gdtI0.f00237 > -rw-rw-r-- 1 353M Oct 16 22:58 gdtI0.f00238 > -rw-rw-r-- 1 353M Oct 16 23:04 gdtI0.f00239 > -rw-rw-r-- 1 353M Oct 16 23:10 gdtI0.f00240 > -rw-rw-r-- 1 353M Oct 16 23:16 gdtI0.f00241 > -rw-rw-r-- 1 353M Oct 16 23:22 gdtI0.f00242 > -rw-rw-r-- 1 353M Oct 16 23:28 gdtI0.f00243 > -rw-rw-r-- 1 353M Oct 16 23:34 gdtI0.f00244 > -rw-rw-r-- 1 353M Oct 16 23:40 gdtI0.f00245 > -rw-rw-r-- 1 353M Oct 16 23:46 gdtI0.f00246 > -rw-rw-r-- 1 353M Oct 16 23:52 gdtI0.f00247 > -rw-rw-r-- 1 353M Oct 16 23:58 gdtI0.f00248 > -rw-rw-r-- 1 353M Oct 17 00:04 gdtI0.f00249 > -rw-rw-r-- 1 353M Oct 17 00:10 gdtI0.f00250 > -rw-rw-r-- 1 353M Oct 17 00:16 gdtI0.f00251 > -rw-rw-r-- 1 353M Oct 17 00:22 gdtI0.f00252 > -rw-rw-r-- 1 353M Oct 17 00:28 gdtI0.f00253 > -rw-rw-r-- 1 353M Oct 17 00:34 gdtI0.f00254 > -rw-rw-r-- 1 353M Oct 17 00:40 gdtI0.f00255 > -rw-rw-r-- 1 353M Oct 17 00:46 gdtI0.f00256 > -rw-rw-r-- 1 353M Oct 17 00:52 gdtI0.f00257 > -rw-rw-r-- 1 353M Oct 17 00:58 gdtI0.f00258 > -rw-rw-r-- 1 353M Oct 17 01:04 gdtI0.f00259 > -rw-rw-r-- 1 353M Oct 17 01:10 gdtI0.f00260 > -rw-rw-r-- 1 353M Oct 17 01:16 gdtI0.f00261 > -rw-rw-r-- 1 353M Oct 17 01:22 gdtI0.f00262 > -rw-rw-r-- 1 353M Oct 17 01:28 gdtI0.f00263 > -rw-rw-r-- 1 353M Oct 17 01:34 gdtI0.f00264 > -rw-rw-r-- 1 353M Oct 17 01:40 gdtI0.f00265 > -rw-rw-r-- 1 353M Oct 17 01:46 gdtI0.f00266 > -rw-rw-r-- 1 353M Oct 17 01:52 gdtI0.f00267 > -rw-rw-r-- 1 353M Oct 17 01:58 gdtI0.f00268 > -rw-rw-r-- 1 353M Oct 17 02:04 gdtI0.f00269 > -rw-rw-r-- 1 353M Oct 17 02:10 gdtI0.f00270 > -rw-rw-r-- 1 353M Oct 17 02:16 gdtI0.f00271 > -rw-rw-r-- 1 353M Oct 17 02:22 gdtI0.f00272 > -rw-rw-r-- 1 353M Oct 17 02:28 gdtI0.f00273 > -rw-rw-r-- 1 353M Oct 17 02:34 gdtI0.f00274 > -rw-rw-r-- 1 353M Oct 17 02:40 gdtI0.f00275 > -rw-rw-r-- 1 353M Oct 17 02:46 gdtI0.f00276 > -rw-rw-r-- 1 353M Oct 17 02:52 gdtI0.f00277 > -rw-rw-r-- 1 353M Oct 17 02:58 gdtI0.f00278 > -rw-rw-r-- 1 353M Oct 17 03:04 gdtI0.f00279 > -rw-rw-r-- 1 353M Oct 17 03:10 gdtI0.f00280 > -rw-rw-r-- 1 353M Oct 17 03:16 gdtI0.f00281 > -rw-rw-r-- 1 353M Oct 17 03:22 gdtI0.f00282 > -rw-rw-r-- 1 353M Oct 17 03:28 gdtI0.f00283 > -rw-rw-r-- 1 353M Oct 17 03:34 gdtI0.f00284 > -rw-rw-r-- 1 353M Oct 17 03:40 gdtI0.f00285 > -rw-rw-r-- 1 353M Oct 17 03:46 gdtI0.f00286 > -rw-rw-r-- 1 353M Oct 17 03:52 gdtI0.f00287 > -rw-rw-r-- 1 353M Oct 17 03:58 gdtI0.f00288 > -rw-rw-r-- 1 353M Oct 17 04:04 gdtI0.f00289 > -rw-rw-r-- 1 353M Oct 17 04:10 gdtI0.f00290 > -rw-rw-r-- 1 353M Oct 17 04:16 gdtI0.f00291 > -rw-rw-r-- 1 353M Oct 17 04:22 gdtI0.f00292 > -rw-rw-r-- 1 353M Oct 17 04:28 gdtI0.f00293 > -rw-rw-r-- 1 353M Oct 17 04:34 gdtI0.f00294 > -rw-rw-r-- 1 353M Oct 17 04:40 gdtI0.f00295 > -rw-rw-r-- 1 353M Oct 17 04:46 gdtI0.f00296 > -rw-rw-r-- 1 353M Oct 17 04:52 gdtI0.f00297 > -rw-rw-r-- 1 353M Oct 17 04:58 gdtI0.f00298 > -rw-rw-r-- 1 353M Oct 17 05:04 gdtI0.f00299 > -rw-rw-r-- 1 353M Oct 17 05:10 gdtI0.f00300 > -rw-rw-r-- 1 353M Oct 17 05:16 gdtI0.f00301 > -rw-rw-r-- 1 353M Oct 17 05:22 gdtI0.f00302 > -rw-rw-r-- 1 353M Oct 17 05:28 gdtI0.f00303 > -rw-rw-r-- 1 353M Oct 17 05:34 gdtI0.f00304 > -rw-rw-r-- 1 353M Oct 17 05:40 gdtI0.f00305 > -rw-rw-r-- 1 353M Oct 17 05:46 gdtI0.f00306 > -rw-rw-r-- 1 353M Oct 17 05:52 gdtI0.f00307 > -rw-rw-r-- 1 353M Oct 17 05:58 gdtI0.f00308 > -rw-rw-r-- 1 353M Oct 17 06:04 gdtI0.f00309 > -rw-rw-r-- 1 353M Oct 17 06:10 gdtI0.f00310 > -rw-rw-r-- 1 353M Oct 17 06:16 gdtI0.f00311 > -rw-rw-r-- 1 353M Oct 17 06:22 gdtI0.f00312 > -rw-rw-r-- 1 353M Oct 17 06:22 gdtI0.f00312 > -rw-rw-r-- 1 353M Oct 17 06:28 gdtI0.f00313 > -rw-rw-r-- 1 353M Oct 17 06:34 gdtI0.f00314 > -rw-rw-r-- 1 353M Oct 17 06:40 gdtI0.f00315 > -rw-rw-r-- 1 353M Oct 17 06:46 gdtI0.f00316 > -rw-rw-r-- 1 377M Oct 17 06:52 hpts.out > -rw-rw-r-- 1 353M Oct 17 06:52 gdtI0.f00317 > -rw-rw-r-- 1 190M Oct 17 06:56 slurm-1134244.out > > > > > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Tue Oct 27 13:58:37 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Wed, 28 Oct 2015 00:28:37 +0530 Subject: [Nek5000-users] MOAB partitioning In-Reply-To: References: Message-ID: Emilian, Let's fix the MOAB related issues first on the MOAB mailing list. Please send us your config.log file so that we can provide pointers to fix the configuration problems. Once this is done, we can revisit NEK-MOAB. Vijay On Monday, October 26, 2015, wrote: > Vijay, > > I downloaded moab-4.8.2 and configured and then ran ?make?, but am getting > errors from missing ?mpi.h? and metis.h, perhaps the configuration is not > OK? > > > > > > Thanks, > > -emilian > > > > *From:* nek5000-users-bounces at lists.mcs.anl.gov > > [mailto:nek5000-users-bounces at lists.mcs.anl.gov > ] > *On Behalf Of *nek5000-users at lists.mcs.anl.gov > > *Sent:* Friday, October 23, 2015 12:24 PM > *To:* nek5000-users at lists.mcs.anl.gov > > *Subject:* Re: [Nek5000-users] MOAB partitioning > > > > What version of MOAB are you using ? It should be available with the last > MOAB 4.8.2 release [1] I think. Let us know if you have problems. > > > > Vijay > > > > [1] http://ftp.mcs.anl.gov/pub/fathom/moab-4.8.2.tar.gz > > > On Friday, October 23, 2015, > wrote: > > Thanks Vijay, however the option ??with-metis? does not seem to exist, > please advice. > > > > > > -emilian > > > > *From:* nek5000-users-bounces at lists.mcs.anl.gov [mailto: > nek5000-users-bounces at lists.mcs.anl.gov] *On Behalf Of * > nek5000-users at lists.mcs.anl.gov > *Sent:* Friday, October 23, 2015 11:35 AM > *To:* nek5000-users at lists.mcs.anl.gov > *Subject:* Re: [Nek5000-users] MOAB partitioning > > > > Emilian, > > > > If you want the partitioner tools, you need to configure MOAB with either > metis (--with-metis=DIR) or with zoltan and optionally parmetis. Let us > know if you have questions. The metis installation route is extremely > straightforward and you should not encounter any issues. > > > > Vijay > > On Friday, October 23, 2015, wrote: > > Dear Nek/Moab users, > > > > I built Moab, but in the bin folder the ?mbpart? code is missing and I > need it to partition an .h5m mesh file for Nek. > > > > Any suggestions? > > > > Thanks, > > -emilian > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Wed Oct 28 10:40:17 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Wed, 28 Oct 2015 16:40:17 +0100 Subject: [Nek5000-users] Elsasser subroutines in the MHD solver In-Reply-To: References: Message-ID: Hello again, any help on this problem would be appreciated. My MHD simulations currently keep exploding after a few hundred time steps, seemingly independent of resolution or time step size, and I am not sure where to look for the error. A few hints as to how the MHD code works would help a lot. Cheers, Jan -- ---------------------- From nek5000-users at lists.mcs.anl.gov Wed Oct 28 10:45:46 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Wed, 28 Oct 2015 15:45:46 +0000 Subject: [Nek5000-users] Elsasser subroutines in the MHD solver In-Reply-To: References: , Message-ID: Hi Jan, Could you please describe your case a little bit. What type of domain what boundary conditions you have? the sources of error may be coming from elsewhere. The mhd formulation has not been widely used recently so maybe one needs to take a closer look at it. Oana ________________________________________ From: nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] Sent: Wednesday, October 28, 2015 10:40 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] Elsasser subroutines in the MHD solver Hello again, any help on this problem would be appreciated. My MHD simulations currently keep exploding after a few hundred time steps, seemingly independent of resolution or time step size, and I am not sure where to look for the error. A few hints as to how the MHD code works would help a lot. Cheers, Jan -- ---------------------- _______________________________________________ Nek5000-users mailing list Nek5000-users at lists.mcs.anl.gov https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users From nek5000-users at lists.mcs.anl.gov Thu Oct 29 03:23:00 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 29 Oct 2015 09:23:00 +0100 Subject: [Nek5000-users] Elsasser subroutines in the MHD solver In-Reply-To: References: Message-ID: Please unsubscribe me from the e-mail list . Thank you ! On Wed, Oct 28, 2015 at 4:45 PM, wrote: > Hi Jan, > > Could you please describe your case a little bit. What type of domain what > boundary conditions you have? the sources of error may be coming from > elsewhere. The mhd formulation has not been widely used recently so maybe > one needs to take a closer look at it. > > Oana > ________________________________________ > From: nek5000-users-bounces at lists.mcs.anl.gov [ > nek5000-users-bounces at lists.mcs.anl.gov] on behalf of > nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] > Sent: Wednesday, October 28, 2015 10:40 AM > To: nek5000-users at lists.mcs.anl.gov > Subject: Re: [Nek5000-users] Elsasser subroutines in the MHD solver > > Hello again, > any help on this problem would be appreciated. My MHD simulations > currently keep exploding after a few hundred time steps, seemingly > independent of resolution or time step size, and I am not sure where to > look for the error. A few hints as to how the MHD code works would help > a lot. > > Cheers, > Jan > > -- > ---------------------- > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > -- Giacinto M. F. Genco Master of Science in Nuclear Engineering , Purdue University Master of Science in Aerospace Engineering , Purdue University Italian " Laurea " in Mechanical Engineering , Politecnico di Bari , Bari , Italy . -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Thu Oct 29 09:23:50 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 29 Oct 2015 15:23:50 +0100 Subject: [Nek5000-users] Elsasser subroutines in the MHD solver In-Reply-To: References: Message-ID: Hi, I am simulating a flow in a rotating spheroidal shell (made from a cubed sphere grid) with a periodical forcing and no-slip boundaries for the velocity. Without a magnetic field, this is working great. I recently tried my hand on dynamo simulations and tried to adapt quasi vaccum (n x B = 0) boundary conditions for the magnetic field. I have a local orthogonal coordinate system on the surface, where I set the two tangential components of B to 0 and use div B = 0 to find a value for the normal component . This vector is then transformed back to cartesian coordinates and used in userbc. This is of course a bit ad hoc and needs further testing. However, I am not quite sure in how the MHD implementation in Nek5000 actually works and wether it can be used for my problem. As far as I understand, the Els?sser formulation is mainly used for MHD turbulence. My main questions for further testing are 1) Is a kinematic dynamo possible with Nek5000? (we already have data from a finite volume code of kinematic dynamos for comparison) 2) Since the Elsasser variables combine u and B, are the forcings in userf actually seperate? I used "if (ifield .eq. 1)" in userf, so that the forcing only adds to the velocity field, but the B field starts to grow before u. As mentioned in the earlier mail, I already looked in the source code, but couldn't get any clear answers. Cheers, Jan From nek5000-users at lists.mcs.anl.gov Thu Oct 29 09:37:45 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 29 Oct 2015 09:37:45 -0500 Subject: [Nek5000-users] Time step independence Message-ID: Good morning all, I'm relatively inexperienced with DNS simulations, so I'd appreciate your help with the following: Are there any tests specific to Nek that can be run to determine whether the solution is independent of the time step length? I've attempted a couple of approaches, including: i.) Running for extended periods of time with different fixed time step lengths before using avg_all to calculate velocities and other statistical parameters and then comparing for the different time step lengths. ii.) Calculate the spectra from the velocity magnitude and check whether it is resolving past the -5/3 inertial range. This seems to be the case, as beyond a certain frequency the slope becomes more negative as is the general expectation in the dissipation scale range. iii.) I'm using a subroutine I wrote to calculate the minimum Kolmogorov time and length scales in the domain and comparing those values with my time step length and maximum grid spacing, so as to ensure that those parameter maxima are still smaller than the minimum Kolmogorov scales. Would any of these approaches suffice when making an explicit statement of time step independence? I am at the beginnings a draft manuscript for a publication relating to the work, and I understand that to claim DNS we have to be rigorous in terms of conforming to all the requirements, so I want to get it right from the start. Thanks in advance for your help! Lambert -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Thu Oct 29 11:50:00 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 29 Oct 2015 19:50:00 +0300 Subject: [Nek5000-users] website of NEK5000 Message-ID: Dear neks, The old version of the site had some pages which are absent in the new version, f.e. genbox description, boundary definitions, and especially description of useful functions. Is it possible to give a link to the old version of the site, since the new information does not contain all the information? Thank you, Ilias -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Thu Oct 29 13:16:49 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 29 Oct 2015 21:16:49 +0300 Subject: [Nek5000-users] energy dissipation over a subdomain Message-ID: Dear neks! I would like to compute kinetic energy dissipation over different subdomains. It involves the calculation of the dissipation itself in GLL points, and integration over some domain. I understand now that it is more accurate to involve whole number of elements for integration, and that for computation of the integral over a subdomain one can use a mask (of 1s and 0es) over the whole domain, and after that to use global scalar product like glsc3. Are there the implementations of these ideas? first of all, the creation of a mask, based on geometrical constructions like IF (Y.gt.something) THEN ... and also if somebody has already a procedure of kinetic energy dissipation, though here it is more strait: calculation of of velocity gradient and contraction of its multiplication with itself, Thank you, Ilias -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Thu Oct 29 17:41:05 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 29 Oct 2015 22:41:05 +0000 Subject: [Nek5000-users] website of NEK5000 In-Reply-To: References: Message-ID: Hi Ilias, Most of that information has been moved to the new manual or the math functions are in doxygen. We are working now on updating and making that documentation browasable and link to the new pages properly. Sorry for the inconvenience, and please check once again next Monday when I think we'll be done. Oana ________________________________ From: nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] Sent: Thursday, October 29, 2015 11:50 AM To: nek5000-users at lists.mcs.anl.gov Subject: [Nek5000-users] website of NEK5000 Dear neks, The old version of the site had some pages which are absent in the new version, f.e. genbox description, boundary definitions, and especially description of useful functions. Is it possible to give a link to the old version of the site, since the new information does not contain all the information? Thank you, Ilias -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 30 10:21:25 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 30 Oct 2015 15:21:25 +0000 Subject: [Nek5000-users] energy dissipation over a subdomain In-Reply-To: References: Message-ID: Hi Ilias, As I mentioned to you earlier, for the case when you subdomain integration consists of whole elements, I would do the simplest dimension ybm1(lx1*ly1*lz1), rmask(lx1*ly1*lz1,lelt) nxyz = nx1*ny1*nz1 ntot = nxzy*nelt do e=1,nelt call rzero(rmask,ntot) call col3(ybm1,bm1,nxyz) yavg = vlsum(ybm1,nxyz) yavg = yavg/vlsum(ym1,nxyz) if (yavg.gt.y_something) call rone(rmask(1,1,1,e),nxyz) enddo and then use glsc3 with arguments of bm1, your quantity on GLL mesh, and created rmask. Note that the above approach with modification will work even for the case of the integration subdomain boundary cutting through the elements but you need to use every GLL's ym1 instead of yavg -- be aware that the spectral convergence of this integration with increase of polynomial order will be affected since it is equivalent to integration of a step/discontinuous function inside an element... Note also that if the integration subdomain is much smaller than the whole domain, you could compute the collocation with your quantity and bm1 inside the above loop and do summation yourself Aleks ________________________________ From: nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] Sent: Thursday, October 29, 2015 1:16 PM To: nek5000-users at lists.mcs.anl.gov Subject: [Nek5000-users] energy dissipation over a subdomain Dear neks! I would like to compute kinetic energy dissipation over different subdomains. It involves the calculation of the dissipation itself in GLL points, and integration over some domain. I understand now that it is more accurate to involve whole number of elements for integration, and that for computation of the integral over a subdomain one can use a mask (of 1s and 0es) over the whole domain, and after that to use global scalar product like glsc3. Are there the implementations of these ideas? first of all, the creation of a mask, based on geometrical constructions like IF (Y.gt.something) THEN ... and also if somebody has already a procedure of kinetic energy dissipation, though here it is more strait: calculation of of velocity gradient and contraction of its multiplication with itself, Thank you, Ilias -------------- next part -------------- An HTML attachment was scrubbed... URL: From nek5000-users at lists.mcs.anl.gov Fri Oct 30 10:44:36 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 30 Oct 2015 15:44:36 +0000 Subject: [Nek5000-users] Elsasser subroutines in the MHD solver In-Reply-To: References: , Message-ID: Hi Jan, Yes, kinematic dynamo is achieved in the examples/mhd/ test which demonstrates it for Galloway-Proctor flow. Elsasser formulation is used only for the non-linear (time-explicit) terms and after the time-dicretization, two decoupled Stokes problems are solved for u (ifield=1) and B (ifield=ifldmhd) separately so you should use ifield in forcing of userf accordingly (as in the mhd example) As far the pseudovacuum BC is concerned, I think it requires the modification of stress formulation to handle the BC coupling in B components which is not yet finished -- let's discuss it off-line. Best. Aleks ________________________________________ From: nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] Sent: Thursday, October 29, 2015 9:23 AM To: nek5000-users at lists.mcs.anl.gov Subject: Re: [Nek5000-users] Elsasser subroutines in the MHD solver Hi, I am simulating a flow in a rotating spheroidal shell (made from a cubed sphere grid) with a periodical forcing and no-slip boundaries for the velocity. Without a magnetic field, this is working great. I recently tried my hand on dynamo simulations and tried to adapt quasi vaccum (n x B = 0) boundary conditions for the magnetic field. I have a local orthogonal coordinate system on the surface, where I set the two tangential components of B to 0 and use div B = 0 to find a value for the normal component . This vector is then transformed back to cartesian coordinates and used in userbc. This is of course a bit ad hoc and needs further testing. However, I am not quite sure in how the MHD implementation in Nek5000 actually works and wether it can be used for my problem. As far as I understand, the Els?sser formulation is mainly used for MHD turbulence. My main questions for further testing are 1) Is a kinematic dynamo possible with Nek5000? (we already have data from a finite volume code of kinematic dynamos for comparison) 2) Since the Elsasser variables combine u and B, are the forcings in userf actually seperate? I used "if (ifield .eq. 1)" in userf, so that the forcing only adds to the velocity field, but the B field starts to grow before u. As mentioned in the earlier mail, I already looked in the source code, but couldn't get any clear answers. Cheers, Jan _______________________________________________ Nek5000-users mailing list Nek5000-users at lists.mcs.anl.gov https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users From nek5000-users at lists.mcs.anl.gov Fri Oct 30 13:32:12 2015 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 30 Oct 2015 18:32:12 +0000 Subject: [Nek5000-users] new to nek5000 In-Reply-To: References: Message-ID: Hi AVR, Here is a minimal info for running a first case: ww.mcs.anl.gov/~obabko/nekrun.pdf but I would recommend to look at the available literature: http://nek5000.mcs.anl.gov/documentation-2/ Aleks ________________________________ From: nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov] Sent: Monday, October 26, 2015 3:12 PM To: nek5000-users at lists.mcs.anl.gov Subject: [Nek5000-users] new to nek5000 hey I am extremely new to nek5000 I am trying to solve the examples that are already present. If I just want to compile the already existing files, what are the steps? This may seem lame but cant help it..sry AVR -------------- next part -------------- An HTML attachment was scrubbed... URL: