[Nek5000-users] New code+recycling BC
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Tue May 11 09:22:48 CDT 2010
Hi Markus,
izero(glo_num,n)
should be rewritten as a loop, since glo_num is int8 but izero
is looking for i4.
Also, if glo_num is declared locally in that routine, it needs
to be updated to integer*8.
And, finally, if you anticipate more than 2 billion points (total)
then ishift and nxyz should be declared to be integer*8
Thanks for bringing this to my attention - I can see that I need
to do the same in my codes.
Paul
On Tue, 11 May 2010, nek5000-users at lists.mcs.anl.gov wrote:
> Hi,
>
> thanks for the update. I looked at the jet example and can't quite figure out
> what to change such that my case works with the new code.
>
> My domain has a box consisting of 9 elements in the "periodic" x-direction,
> 12 elements in y and 8 elements in z. The inflow is the y/z plane.
> The numbering is such that the first periodic slab is from element 1 (inflow)
> to 9, then 10 to 19, ... 12 times (in y) to 100-108. Then all other elements
> (the "non-periodic" part) follow, which are a total of 444 per x/y plane.
> Thus, the next 12 slabs (at the second level in z) would start with 445-453,
> 454-462, ...12 times, and so forth.
>
> Here is the part that is giving me trouble, since I don't know what to assign
> for n_in_pipe and ne_per_slab.
>
> c Connect slab next to the last with inflow (recycling method)
> if(istep.eq.0) then
> call izero(glo_num,n)
> do e=1,nelv
> eg = lglel(e)
> if (eg.le.n_in_pipe) then
> do j=1,nx1*ny1 ! Only on FACE 5 (inflow)
> iloc = j + nxyz*(e -1)
> glo_num(iloc) = j + nxyz*(eg-1)
> ieshift = eg + (nslab-1)*ne_per_slab
> ishift = j + nxyz*(ieshift-1)
> if (eg.le.ne_per_slab) glo_num(iloc) = ishift
> enddo
> endif
> enddo
> call gs_setup(gs_bc_hndl,glo_num,n,nekcomm,mp)
> endif
>
> Thanks,
> Markus
>
>
>
> nek5000-users at lists.mcs.anl.gov wrote:
>> Hi Markus,
>>
>> yes we changed glo_num to be an 8-byte integer array. Unfortunately we did
>> not update the examples. I'll update the turbJet example.
>>
>> Stefan
>>
>>
>> On May 5, 2010, at 12:39 AM, nek5000-users at lists.mcs.anl.gov wrote:
>>
>>> Hiu,
>>>
>>> sorry about the delay, to make sure I regenerated the problem.
>>>
>>> I did as you suggested, it is still messed up when opening the first fld
>>> dump in
>>> VisIt with the meta file containing only one file.
>>>
>>> What I meant by element ordering is the way the recycling b.c. is set up,
>>> where
>>> the "outflow" face of recycling box is established by counting a number of
>>> elements downstream from the inflow, as it is done in the jet example. I
>>> have a
>>> suspicion that something changed there (not in my .rea file, though).
>>> The problem came about when updating Nek from 404 to 503, I did not change
>>> Visit.
>>>
>>> Thanks,
>>> Markus
>>>
>>>
>>>
>>> Quoting nek5000-users at lists.mcs.anl.gov:
>>>
>>>> Can you dump a field file including the geometry and then visualize it
>>>> using
>>>> VisIt (your metadata file should only contain one single fld). Is it
>>>> still
>>>> messed up?
>>>>
>>>> Stefan
>>>>
>>>>
>>>> On May 3, 2010, at 5:24 PM, nek5000-users at lists.mcs.anl.gov wrote:
>>>>
>>>>> Markus,
>>>>>
>>>>> is it only a viz issue or do you have some problems in Nek after
>>>>> upgrading
>>>> to the latest release.
>>>>> Stefan
>>>>>
>>>>>
>>>>> On May 3, 2010, at 4:25 PM, nek5000-users at lists.mcs.anl.gov wrote:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> when updating the code from rev. 404 (oldvel.png) to 503
>>>>>> (newvel.png), I realized a problem with the recycling
>>>>>> (periodic) boundary condition for a channel simulation I am doing -
>>>>>> compare the attached pictures of velocity on the inflow plane (the
>>>>>> inflow
>>>> is the Y/Z plane). For the two cases, SIZE/SIZEu, .rea, the restart step
>>>> and
>>>> .usr are the exact same.
>>>>>> Here are the relevant pieces from .usr. Have any of the functions
>>>>>> changed or am I doing something wrong? It seems as if the element
>>>>>> ordering is not what it was before.
>>>>>> I did this based on the jet example.
>>>>>>
>>>>>> Thanks,
>>>>>> Markus
>>>>>>
>>>>>>
>>>>>> c-----------------------------------------------------------------------
>>>>>> subroutine userbc (ix,iy,iz,iside,eg)
>>>>>> include 'SIZE'
>>>>>> include 'TOTAL'
>>>>>> include 'NEKUSE'
>>>>>>
>>>>>> common /cvelbc/ uin(lx1,ly1,lz1,lelv)
>>>>>> $ , vin(lx1,ly1,lz1,lelv)
>>>>>> $ , win(lx1,ly1,lz1,lelv)
>>>>>> $ , tin(lx1,ly1,lz1,lelv)
>>>>>>
>>>>>> integer e,eg
>>>>>>
>>>>>> e = gllel(eg)
>>>>>>
>>>>>> ux=uin(ix,iy,iz,e)
>>>>>> uy=vin(ix,iy,iz,e)
>>>>>> uz=win(ix,iy,iz,e)
>>>>>> .
>>>>>> ....
>>>>>>
>>>>>> c-----------------------------------------------------------------------
>>>>>> subroutine userchk
>>>>>> include 'SIZE'
>>>>>> include 'TOTAL'
>>>>>> include 'ZPER' ! for nelx,nely,nelz
>>>>>> include 'RESTART' !Needs to be here for prepost to work
>>>>>> common /cvlmsk/ vlmsk(lx1,ly1,lz1,lelt),vvol,
>>>>>> & wt(lx1*ly1*lz1,lelt),vol_per
>>>>>>
>>>>>> integer e,f,eg,ninx,niny,ninz
>>>>>>
>>>>>> .c-----Computations for recycling BC
>>>>>> speed = glsc2(vx,wt,n)/vol_per ! Where vol_per is the volume of
>>>>>> the recycling box
>>>>>> starg = 1.0
>>>>>> addtemp = 1.0
>>>>>> call set_inflow(starg,speed,addtemp) ! set up inflow BCs
>>>>>> .
>>>>>> ....
>>>>>>
>>>>>> c-----------------------------------------------------------------------
>>>>>> subroutine set_inflow(starg,speed,addtemp) ! set up inflow BCs
>>>>>>
>>>>>> include 'SIZE'
>>>>>> include 'TOTAL'
>>>>>>
>>>>>> integer icalld,e,eg,f
>>>>>> save icalld
>>>>>> data icalld /0/
>>>>>>
>>>>>> common /cvelbc/ uin(lx1,ly1,lz1,lelv)
>>>>>> $ , vin(lx1,ly1,lz1,lelv)
>>>>>> $ , win(lx1,ly1,lz1,lelv)
>>>>>> $ , tin(lx1,ly1,lz1,lelv)
>>>>>>
>>>>>> common /scruz/ ptr(lx1,ly1,lz1,lelv)
>>>>>> integer ptr,gs_bc_hndl
>>>>>> save gs_bc_hndl
>>>>>>
>>>>>> real ratio
>>>>>> save ratio
>>>>>> data ratio / 1. /
>>>>>>
>>>>>> common /nekmpi/ mid,mp,nekcomm,nekgroup,nekreal
>>>>>>
>>>>>> n = nx1*ny1*nz1*nelv
>>>>>>
>>>>>> if (icalld.eq.0) then
>>>>>> icalld = 1
>>>>>> nxyz = nx1*ny1*nz1
>>>>>>
>>>>>> do e=1,nelv
>>>>>> eg = lglel(e)
>>>>>> eo = nxyz*(eg-1) ! offset
>>>>>> do i=1,nxyz
>>>>>> ptr(i,1,1,e) = i+eo
>>>>>> enddo
>>>>>>
>>>>>> do k=2,nz1-1 ! get rid of interior pointers
>>>>>> do j=2,ny1-1 do i=2,nx1-1
>>>>>> ptr(i,j,k,e) = 0
>>>>>> enddo
>>>>>> enddo
>>>>>> enddo
>>>>>>
>>>>>> nface = 2*ndim
>>>>>> do f=1,nface ! connect inflow to elems downstream
>>>>>> ioff = nxyz*8 ! 5 elements in X to end of "periodic"
>>>>>> sec.
>>>>>> if (cbc(f,e,1).eq.'v ') then
>>>>>> call iface_add(ptr,f,e,ioff,nx1,ny1,nz1)
>>>>>> endif
>>>>>> enddo
>>>>>>
>>>>>> enddo
>>>>>>
>>>>>> call gs_setup(gs_bc_hndl,ptr,n,nekcomm,np) ! connect v +
>>>>>> downstream
>>>>>>
>>>>>> endif
>>>>>>
>>>>>> call copy(uin,vx,n)
>>>>>> call copy(vin,vy,n)
>>>>>> call copy(win,vz,n)
>>>>>> call copy(tin,t,n)
>>>>>>
>>>>>> call col2(uin,v1mask,n)
>>>>>> call col2(vin,v2mask,n)
>>>>>> call col2(win,v3mask,n)
>>>>>> call col2(tin,tmask,n)
>>>>>>
>>>>>> call gs_op(gs_bc_hndl,uin,1,1,0) ! 1 ==> + ! uin(inflow) =
>>>>>> vx(slab_k)
>>>>>> call gs_op(gs_bc_hndl,vin,1,1,0) ! 1 ==> +
>>>>>> call gs_op(gs_bc_hndl,win,1,1,0) ! 1 ==> +
>>>>>> call gs_op(gs_bc_hndl,tin,1,1,0) ! 1 ==> +
>>>>>>
>>>>>> if (speed.gt.0) then
>>>>>> ratio = .5*(starg/speed + ratio)
>>>>>> call cmult(uin,ratio,n)
>>>>>> call cmult(vin,ratio,n)
>>>>>> call cmult(win,ratio,n)
>>>>>> call cadd(tin,addtemp,n) !Substract added heat
>>>>>> endif
>>>>>>
>>>>>> return
>>>>>> end
>>>>>>
>>>>>>
>>>>>>
>>>>>> <oldvel.png><newvel.png>_______________________________________________
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