From schwaenen at tamu.edu Sat Nov 14 11:25:51 2009 From: schwaenen at tamu.edu (Markus Schwaenen) Date: Sat, 14 Nov 2009 12:25:51 -0500 Subject: [Nek5000-users] Nekmerge question Message-ID: <1258219551.4afee81fa268c@webmail.vt.edu> Dear developers, I was working on getting familiar with nekmerge, but I am having trouble with a simple test case. Would you take a look at the messages I got? Trying the attached 3D cases, the result is: " [mschwaenen at dugglebylab4 mergetest]$ nekmerge ascii or binary output ? (a/b): a Input new (output) file name: test Input source .rea file name or press enter to continue: 1d Input source .rea file name or press enter to continue: 2d Input source .rea file name or press enter to continue: locglob: 1 1 1 864 locglob: 1 2 19 864 locglob: 1 3 123 864 locglob: 2 1 528 864 locglob: 2 2 528 864 locglob: 2 3 528 864 locglob: 3 1 528 864 locglob: 3 2 528 864 locglob: 3 3 528 864 done locglob_lexico: 528 528 864 At line 573 of file nekmerge.f Fortran runtime error: End of record 2D does not work either (1.rea and 2.rea): nekmerge ascii or binary output ? (a/b): a Input new (output) file name: test Input source .rea file name or press enter to continue: 1 Input source .rea file name or press enter to continue: 2 Input source .rea file name or press enter to continue: locglob: 1 1 1 144 locglob: 1 2 52 144 locglob: 2 1 96 144 locglob: 2 2 96 144 done locglob_lexico: 96 96 144 FACE ERROR: 1 3 28 12 " Thank you, Markus Schwaenen -------------- next part -------------- A non-text attachment was scrubbed... Name: 1.rea Type: application/octet-stream Size: 11954 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 1d.rea Type: application/octet-stream Size: 59261 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 2.rea Type: application/octet-stream Size: 13934 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 2d.rea Type: application/octet-stream Size: 73293 bytes Desc: not available URL: From stefanke at lav.mavt.ethz.ch Sun Nov 15 05:48:21 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Sun, 15 Nov 2009 12:48:21 +0100 Subject: [Nek5000-users] nek5000 v.1.0 planning Message-ID: <8CF153E3-95EE-4ED4-BF31-DB68DAAF784A@lav.mavt.ethz.ch> Dear Nek Users/Developers, I just started to write up the things we have to do before we can release our first stable release (see here: https://nek5000.mcs.anl.gov/index.php/Nek5000_1.0_Planning ). Please help us. Your input (bugs, additional features, improvements) is highly appreciated! Cheers, Stefan From folke at kit.edu Wed Nov 25 03:02:42 2009 From: folke at kit.edu (Frederik Folke) Date: Wed, 25 Nov 2009 10:02:42 +0100 Subject: [Nek5000-users] How to make the tools? Message-ID: <20091125100242.huaxw9lb4088ck8g@webmail.uni-karlsruhe.de> Dear Nek developers, I just started to introduce myself to your code. Unfortunately I had some problems to "make" the tools of the program (prenek, postnek...). I used the existing makefile in the nek5_svn/trunk/tools/prenek directory and added the first lines of the maketools script: #!/bin/bash # binary path bin_nek_tools="$HOME/bin" # specify your compilers here F77="mpif77" CC="mpicc" To start the compilation I typed: make -f makefile But I got the following message: "mpif77" -c prenek.f prenek.f:89.3: 300 CALL SETEQT 1 prenek.f:198.72: GO TO 300 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) "mpif77" -c curve.f "mpif77" -c edit.f "mpif77" -c build.f "mpif77" -c build1.f "mpif77" -c build2.f "mpif77" -c bound.f "mpif77" -c plot.f "mpif77" -c xinterface.f "mpif77" -c glomod.f glomod.f:1534.9: ja(2) = w(2,1) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 "mpif77" -c legend.f "mpif77" -c vprops.f "mpif77" -c iolib.f "mpif77" -c subs.f "mpif77" -c zipper2.f zipper2.f:1560.20: COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size zipper2.f:2816.20: COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size zipper2.f:4640.20: common /ctmp0/ jx(nxm*3),jyt(nym*3),jzt(nzm*3) 1 Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size zipper2.f:4639.20: common /ctmp2/ xp(nxm3),yp(nxm3),zp(nxm3),wk(ldw) 1 Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size zipper2.f:4776.20: common /ctmp0/ xcb(2,2,2),ycb(2,2,2),zcb(2,2,2),w(ldw) 1 Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size "mpif77" -c postnek6.f "mpif77" -c screen.f "mpicc" -c revert.c "mpif77" -c crs.f "mpif77" -c mxm.f "mpicc" -c xdriver.c "mpif77" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory collect2: ld returned 1 exit status make: *** [prex] Error 1 Hope you can help me. Best regards, Frederik p.s.: Is there existing a "Users Guide" for Nek5000 or is at least the "Users Guide" for Nekton v?? helpfull? From stefanke at lav.mavt.ethz.ch Wed Nov 25 03:17:56 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Wed, 25 Nov 2009 10:17:56 +0100 Subject: [Nek5000-users] How to make the tools? In-Reply-To: <20091125100242.huaxw9lb4088ck8g@webmail.uni-karlsruhe.de> References: <20091125100242.huaxw9lb4088ck8g@webmail.uni-karlsruhe.de> Message-ID: <5A0ECF38-FE9E-4CE4-B3AF-3561F02C22F2@lav.mavt.ethz.ch> First of all there is no need to use the MPI-wrappers because all tools are serial programs. To compile the tools just run: ./maketools e.g. ./maketools genmap hth, Stefan On Nov 25, 2009, at 10:02 AM, Frederik Folke wrote: > Dear Nek developers, > > I just started to introduce myself to your code. Unfortunately I had some problems to > "make" the tools of the program (prenek, postnek...). I used the existing makefile in the > nek5_svn/trunk/tools/prenek directory and added the first lines of the maketools script: > > #!/bin/bash > > # binary path > bin_nek_tools="$HOME/bin" > > # specify your compilers here > F77="mpif77" > CC="mpicc" > > To start the compilation I typed: make -f makefile > > But I got the following message: > > "mpif77" -c prenek.f > prenek.f:89.3: > > 300 CALL SETEQT 1 > prenek.f:198.72: > > GO TO 300 2 > Warning: Label at (1) is not in the same block as the GOTO statement at (2) > "mpif77" -c curve.f > "mpif77" -c edit.f > "mpif77" -c build.f > "mpif77" -c build1.f > "mpif77" -c build2.f > "mpif77" -c bound.f > "mpif77" -c plot.f > "mpif77" -c xinterface.f > "mpif77" -c glomod.f > glomod.f:1534.9: > > ja(2) = w(2,1) 1 > Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 > "mpif77" -c legend.f > "mpif77" -c vprops.f > "mpif77" -c iolib.f > "mpif77" -c subs.f > "mpif77" -c zipper2.f > zipper2.f:1560.20: > > COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 > Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size > zipper2.f:2816.20: > > COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 > Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size > zipper2.f:4640.20: > > common /ctmp0/ jx(nxm*3),jyt(nym*3),jzt(nzm*3) 1 > Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size > zipper2.f:4639.20: > > common /ctmp2/ xp(nxm3),yp(nxm3),zp(nxm3),wk(ldw) 1 > Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size > zipper2.f:4776.20: > > common /ctmp0/ xcb(2,2,2),ycb(2,2,2),zcb(2,2,2),w(ldw) 1 > Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size > "mpif77" -c postnek6.f > "mpif77" -c screen.f > "mpicc" -c revert.c > "mpif77" -c crs.f > "mpif77" -c mxm.f > "mpicc" -c xdriver.c > "mpif77" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o > plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o > screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm > /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory > collect2: ld returned 1 exit status > make: *** [prex] Error 1 > > > Hope you can help me. > > Best regards, > Frederik > > > p.s.: Is there existing a "Users Guide" for Nek5000 or is at least the "Users Guide" for > Nekton v?? helpfull? > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users From stefanke at lav.mavt.ethz.ch Wed Nov 25 03:50:04 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Wed, 25 Nov 2009 10:50:04 +0100 Subject: [Nek5000-users] How to make the tools? In-Reply-To: <20091125104505.fyt7utk7sw8c04o8@webmail.uni-karlsruhe.de> References: <20091125100242.huaxw9lb4088ck8g@webmail.uni-karlsruhe.de> <5A0ECF38-FE9E-4CE4-B3AF-3561F02C22F2@lav.mavt.ethz.ch> <20091125104505.fyt7utk7sw8c04o8@webmail.uni-karlsruhe.de> Message-ID: This is your problem: > /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory Check the output of: > echo $HOME Try to hardwire the 'bin_nek_tools' path in makenek e.g. > bin_nek_tools="/home/foor/bin" Stefan It looks like 'bin_nek_tools' path is not correct On Nov 25, 2009, at 10:45 AM, Frederik Folke wrote: > Hallo Stefan, > > first of all thanks a lot for fast answering. I just tested your tip and run: > > ~/nek5_svn/trunk/tools$ ./maketools prenek > > But there was an error message: > > /home/folke/nek5_svn/trunk/tools/ > ---------------------- > Make prenek... > ---------------------- > make[1]: Entering directory `/home/folke/nek5_svn/trunk/tools/prenek' > "gfortran" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm > /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory > collect2: ld returned 1 exit status > make[1]: *** [prex] Error 1 > make[1]: Leaving directory `/home/folke/nek5_svn/trunk/tools/prenek' > make: *** [all] Error 1 > > Here is the maketools script: > > #!/bin/bash > > # binary path > bin_nek_tools="$HOME/nek5_svn/trunk/tools/" > > echo $bin_nek_tools > > # specify your compilers here > F77="gfortran" > CC="gcc" > > > So you have got an idea where I might have done a mistake?? > > > Best regards, > Frederik > > > > Zitat von stefanke : > >> First of all there is no need to use the MPI-wrappers because all tools are serial programs. >> To compile the tools just run: >> >> ./maketools >> >> e.g. >> >> ./maketools genmap >> >> >> hth, >> Stefan >> >> >> On Nov 25, 2009, at 10:02 AM, Frederik Folke wrote: >> >>> Dear Nek developers, >>> >>> I just started to introduce myself to your code. Unfortunately I had some problems to >>> "make" the tools of the program (prenek, postnek...). I used the existing makefile in the >>> nek5_svn/trunk/tools/prenek directory and added the first lines of the maketools script: >>> >>> #!/bin/bash >>> >>> # binary path >>> bin_nek_tools="$HOME/bin" >>> >>> # specify your compilers here >>> F77="mpif77" >>> CC="mpicc" >>> >>> To start the compilation I typed: make -f makefile >>> >>> But I got the following message: >>> >>> "mpif77" -c prenek.f >>> prenek.f:89.3: >>> >>> 300 CALL SETEQT 1 >>> prenek.f:198.72: >>> >>> GO TO 300 2 >>> Warning: Label at (1) is not in the same block as the GOTO statement at (2) >>> "mpif77" -c curve.f >>> "mpif77" -c edit.f >>> "mpif77" -c build.f >>> "mpif77" -c build1.f >>> "mpif77" -c build2.f >>> "mpif77" -c bound.f >>> "mpif77" -c plot.f >>> "mpif77" -c xinterface.f >>> "mpif77" -c glomod.f >>> glomod.f:1534.9: >>> >>> ja(2) = w(2,1) 1 >>> Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 >>> "mpif77" -c legend.f >>> "mpif77" -c vprops.f >>> "mpif77" -c iolib.f >>> "mpif77" -c subs.f >>> "mpif77" -c zipper2.f >>> zipper2.f:1560.20: >>> >>> COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 >>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>> zipper2.f:2816.20: >>> >>> COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 >>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>> zipper2.f:4640.20: >>> >>> common /ctmp0/ jx(nxm*3),jyt(nym*3),jzt(nzm*3) 1 >>> Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size >>> zipper2.f:4639.20: >>> >>> common /ctmp2/ xp(nxm3),yp(nxm3),zp(nxm3),wk(ldw) 1 >>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>> zipper2.f:4776.20: >>> >>> common /ctmp0/ xcb(2,2,2),ycb(2,2,2),zcb(2,2,2),w(ldw) 1 >>> Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size >>> "mpif77" -c postnek6.f >>> "mpif77" -c screen.f >>> "mpicc" -c revert.c >>> "mpif77" -c crs.f >>> "mpif77" -c mxm.f >>> "mpicc" -c xdriver.c >>> "mpif77" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o >>> plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o >>> screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm >>> /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory >>> collect2: ld returned 1 exit status >>> make: *** [prex] Error 1 >>> >>> >>> Hope you can help me. >>> >>> Best regards, >>> Frederik >>> >>> >>> p.s.: Is there existing a "Users Guide" for Nek5000 or is at least the "Users Guide" for >>> Nekton v?? helpfull? >>> >>> _______________________________________________ >>> Nek5000-users mailing list >>> Nek5000-users at lists.mcs.anl.gov >>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >> >> > > > From stefanke at lav.mavt.ethz.ch Wed Nov 25 03:58:05 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Wed, 25 Nov 2009 10:58:05 +0100 Subject: [Nek5000-users] How to make the tools? In-Reply-To: References: <20091125100242.huaxw9lb4088ck8g@webmail.uni-karlsruhe.de> <5A0ECF38-FE9E-4CE4-B3AF-3561F02C22F2@lav.mavt.ethz.ch> <20091125104505.fyt7utk7sw8c04o8@webmail.uni-karlsruhe.de> Message-ID: <143646A3-34C7-4D0C-9048-9F4A8C27F461@lav.mavt.ethz.ch> Are you using the latest repo version? On Nov 25, 2009, at 10:50 AM, stefanke wrote: > This is your problem: >> /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory > > Check the output of: >> echo $HOME > > Try to hardwire the 'bin_nek_tools' path in makenek e.g. >> bin_nek_tools="/home/foor/bin" > > > Stefan > > > > > It looks like 'bin_nek_tools' path is not correct > > On Nov 25, 2009, at 10:45 AM, Frederik Folke wrote: > >> Hallo Stefan, >> >> first of all thanks a lot for fast answering. I just tested your tip and run: >> >> ~/nek5_svn/trunk/tools$ ./maketools prenek >> >> But there was an error message: >> >> /home/folke/nek5_svn/trunk/tools/ >> ---------------------- >> Make prenek... >> ---------------------- >> make[1]: Entering directory `/home/folke/nek5_svn/trunk/tools/prenek' >> "gfortran" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm >> /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory >> collect2: ld returned 1 exit status >> make[1]: *** [prex] Error 1 >> make[1]: Leaving directory `/home/folke/nek5_svn/trunk/tools/prenek' >> make: *** [all] Error 1 >> >> Here is the maketools script: >> >> #!/bin/bash >> >> # binary path >> bin_nek_tools="$HOME/nek5_svn/trunk/tools/" >> >> echo $bin_nek_tools >> >> # specify your compilers here >> F77="gfortran" >> CC="gcc" >> >> >> So you have got an idea where I might have done a mistake?? >> >> >> Best regards, >> Frederik >> >> >> >> Zitat von stefanke : >> >>> First of all there is no need to use the MPI-wrappers because all tools are serial programs. >>> To compile the tools just run: >>> >>> ./maketools >>> >>> e.g. >>> >>> ./maketools genmap >>> >>> >>> hth, >>> Stefan >>> >>> >>> On Nov 25, 2009, at 10:02 AM, Frederik Folke wrote: >>> >>>> Dear Nek developers, >>>> >>>> I just started to introduce myself to your code. Unfortunately I had some problems to >>>> "make" the tools of the program (prenek, postnek...). I used the existing makefile in the >>>> nek5_svn/trunk/tools/prenek directory and added the first lines of the maketools script: >>>> >>>> #!/bin/bash >>>> >>>> # binary path >>>> bin_nek_tools="$HOME/bin" >>>> >>>> # specify your compilers here >>>> F77="mpif77" >>>> CC="mpicc" >>>> >>>> To start the compilation I typed: make -f makefile >>>> >>>> But I got the following message: >>>> >>>> "mpif77" -c prenek.f >>>> prenek.f:89.3: >>>> >>>> 300 CALL SETEQT 1 >>>> prenek.f:198.72: >>>> >>>> GO TO 300 2 >>>> Warning: Label at (1) is not in the same block as the GOTO statement at (2) >>>> "mpif77" -c curve.f >>>> "mpif77" -c edit.f >>>> "mpif77" -c build.f >>>> "mpif77" -c build1.f >>>> "mpif77" -c build2.f >>>> "mpif77" -c bound.f >>>> "mpif77" -c plot.f >>>> "mpif77" -c xinterface.f >>>> "mpif77" -c glomod.f >>>> glomod.f:1534.9: >>>> >>>> ja(2) = w(2,1) 1 >>>> Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 >>>> "mpif77" -c legend.f >>>> "mpif77" -c vprops.f >>>> "mpif77" -c iolib.f >>>> "mpif77" -c subs.f >>>> "mpif77" -c zipper2.f >>>> zipper2.f:1560.20: >>>> >>>> COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 >>>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>>> zipper2.f:2816.20: >>>> >>>> COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 >>>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>>> zipper2.f:4640.20: >>>> >>>> common /ctmp0/ jx(nxm*3),jyt(nym*3),jzt(nzm*3) 1 >>>> Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size >>>> zipper2.f:4639.20: >>>> >>>> common /ctmp2/ xp(nxm3),yp(nxm3),zp(nxm3),wk(ldw) 1 >>>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>>> zipper2.f:4776.20: >>>> >>>> common /ctmp0/ xcb(2,2,2),ycb(2,2,2),zcb(2,2,2),w(ldw) 1 >>>> Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size >>>> "mpif77" -c postnek6.f >>>> "mpif77" -c screen.f >>>> "mpicc" -c revert.c >>>> "mpif77" -c crs.f >>>> "mpif77" -c mxm.f >>>> "mpicc" -c xdriver.c >>>> "mpif77" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o >>>> plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o >>>> screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm >>>> /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory >>>> collect2: ld returned 1 exit status >>>> make: *** [prex] Error 1 >>>> >>>> >>>> Hope you can help me. >>>> >>>> Best regards, >>>> Frederik >>>> >>>> >>>> p.s.: Is there existing a "Users Guide" for Nek5000 or is at least the "Users Guide" for >>>> Nekton v?? helpfull? >>>> >>>> _______________________________________________ >>>> Nek5000-users mailing list >>>> Nek5000-users at lists.mcs.anl.gov >>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >>> >>> >> >> >> > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users From tozgokmen at rsmas.miami.edu Thu Nov 26 10:05:12 2009 From: tozgokmen at rsmas.miami.edu (Tamay Ozgokmen) Date: Thu, 26 Nov 2009 11:05:12 -0500 Subject: [Nek5000-users] nek5000 compilation Message-ID: <294E6CEF-BE47-4573-A0A8-A8949BAED6EE@rsmas.miami.edu> Hi, I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through (compiler.out attached); any suggestions? Thanks! Tamay ********************************************************************************************************** #!/bin/bash # # nek5000 build script # (c) 2008,2009 UCHICAGO ARGONNE, LLC # # source path SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" # plug-in list PLUGIN_LIST="" # pre-processor symbol list PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM # Fortran compiler F77="mpif77" # C compiler CC="mpixlc" ****************************************************************************************************************** -------------- next part -------------- A non-text attachment was scrubbed... Name: compiler.out Type: application/octet-stream Size: 96471 bytes Desc: not available URL: -------------- next part -------------- From stefanke at lav.mavt.ethz.ch Thu Nov 26 10:16:23 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Thu, 26 Nov 2009 17:16:23 +0100 Subject: [Nek5000-users] nek5000 compilation In-Reply-To: <294E6CEF-BE47-4573-A0A8-A8949BAED6EE@rsmas.miami.edu> References: <294E6CEF-BE47-4573-A0A8-A8949BAED6EE@rsmas.miami.edu> Message-ID: "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file not found. It seems like your running on a non-glibc platform. Right? #Stefan On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote: > > Hi, > > I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through > (compiler.out attached); any suggestions? > > Thanks! > Tamay > > > ********************************************************************************************************** > > #!/bin/bash > # > # nek5000 build script > # (c) 2008,2009 UCHICAGO ARGONNE, LLC > # > > # source path > SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" > > # plug-in list > PLUGIN_LIST="" > > # pre-processor symbol list > PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM > > # Fortran compiler > F77="mpif77" > > # C compiler > CC="mpixlc" > > ****************************************************************************************************************** > > > > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users From stefanke at lav.mavt.ethz.ch Thu Nov 26 10:40:02 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Thu, 26 Nov 2009 17:40:02 +0100 Subject: [Nek5000-users] nek5000 compilation In-Reply-To: References: <294E6CEF-BE47-4573-A0A8-A8949BAED6EE@rsmas.miami.edu> Message-ID: <7815FD39-03A8-470B-8A18-2BB5B6D403BE@lav.mavt.ethz.ch> What's your OS (operating system)? On Nov 26, 2009, at 5:25 PM, Tamay Ozgokmen wrote: > > Hi Stefan, > > I am unable to answer this question since I know nothing about C or glibc :) > I also tried with mpicc (instead of mpixlc) with similar results. > It supposed to be a system based on Power G4 (similar to IBM P4 and P5) chips with > IBM compilers, I am not sure what exactly is installed. The website is (if any use): > > http://www.arc.vt.edu/arc/SystemX/ > > I have been running various versions of nek5000 on this for several years. > A makefile that I use to compile an older version of nek500 is attached, > if it can provide any clues on how to fix this... > > Thanks, > Tamay > > > > > > On Nov 26, 2009, at 11:16 AM, stefanke wrote: > >> "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file not found. >> >> It seems like your running on a non-glibc platform. Right? >> >> #Stefan >> >> On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote: >> >>> >>> Hi, >>> >>> I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through >>> (compiler.out attached); any suggestions? >>> >>> Thanks! >>> Tamay >>> >>> >>> ********************************************************************************************************** >>> >>> #!/bin/bash >>> # >>> # nek5000 build script >>> # (c) 2008,2009 UCHICAGO ARGONNE, LLC >>> # >>> >>> # source path >>> SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" >>> >>> # plug-in list >>> PLUGIN_LIST="" >>> >>> # pre-processor symbol list >>> PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM >>> >>> # Fortran compiler >>> F77="mpif77" >>> >>> # C compiler >>> CC="mpixlc" >>> >>> ****************************************************************************************************************** >>> >>> >>> >>> >>> _______________________________________________ >>> Nek5000-users mailing list >>> Nek5000-users at lists.mcs.anl.gov >>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >> > > ******************************************************************************* > > Tamay Ozgokmen > Associate Professor > Division of Meteorology and Physical Oceanography > Rosenstiel School of Marine and Atmospheric Science > 4600 Rickenbacker Causeway > Miami, FL 33149-1098, USA > Phone : 305 421 4053 > Fax : 305 421 4696 > Email : tozgokmen at rsmas.miami.edu > Web : http://www.rsmas.miami.edu/personal/tamay > From stefanke at lav.mavt.ethz.ch Thu Nov 26 10:47:00 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Thu, 26 Nov 2009 17:47:00 +0100 Subject: [Nek5000-users] nek5000 compilation In-Reply-To: <9A006E7F-D883-4EE8-AA2D-49DAEFDE2E35@rsmas.miami.edu> References: <294E6CEF-BE47-4573-A0A8-A8949BAED6EE@rsmas.miami.edu> <7815FD39-03A8-470B-8A18-2BB5B6D403BE@lav.mavt.ethz.ch> <9A006E7F-D883-4EE8-AA2D-49DAEFDE2E35@rsmas.miami.edu> Message-ID: Ok it's indeed a non-glibc platform. Please replace your chelpers.c (source file in the trunk) by #include #include #include #include "jl/fname.h" #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) /* Obtain a backtrace and print it to stdout. */ void print_stack(void) { #if defined __GLIBC__ void *bt[50]; int i; int bt_size = backtrace(bt, 50); char **symbols = backtrace_symbols(bt, bt_size); printf ("backtrace(): obtained %d stack frames.\n", bt_size); for (i=0; i > It is Apple Mac OS X 10.3.9 > > (sysx is based on a bunch of Macs.. strange but it works OK...) > > On Nov 26, 2009, at 11:40 AM, stefanke wrote: > >> What's your OS (operating system)? >> >> >> On Nov 26, 2009, at 5:25 PM, Tamay Ozgokmen wrote: >> >>> >>> Hi Stefan, >>> >>> I am unable to answer this question since I know nothing about C or glibc :) >>> I also tried with mpicc (instead of mpixlc) with similar results. >>> It supposed to be a system based on Power G4 (similar to IBM P4 and P5) chips with >>> IBM compilers, I am not sure what exactly is installed. The website is (if any use): >>> >>> http://www.arc.vt.edu/arc/SystemX/ >>> >>> I have been running various versions of nek5000 on this for several years. >>> A makefile that I use to compile an older version of nek500 is attached, >>> if it can provide any clues on how to fix this... >>> >>> Thanks, >>> Tamay >>> >>> >>> >>> >>> >>> On Nov 26, 2009, at 11:16 AM, stefanke wrote: >>> >>>> "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file not found. >>>> >>>> It seems like your running on a non-glibc platform. Right? >>>> >>>> #Stefan >>>> >>>> On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote: >>>> >>>>> >>>>> Hi, >>>>> >>>>> I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through >>>>> (compiler.out attached); any suggestions? >>>>> >>>>> Thanks! >>>>> Tamay >>>>> >>>>> >>>>> ********************************************************************************************************** >>>>> >>>>> #!/bin/bash >>>>> # >>>>> # nek5000 build script >>>>> # (c) 2008,2009 UCHICAGO ARGONNE, LLC >>>>> # >>>>> >>>>> # source path >>>>> SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" >>>>> >>>>> # plug-in list >>>>> PLUGIN_LIST="" >>>>> >>>>> # pre-processor symbol list >>>>> PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM >>>>> >>>>> # Fortran compiler >>>>> F77="mpif77" >>>>> >>>>> # C compiler >>>>> CC="mpixlc" >>>>> >>>>> ****************************************************************************************************************** >>>>> >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Nek5000-users mailing list >>>>> Nek5000-users at lists.mcs.anl.gov >>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >>>> >>> >>> ******************************************************************************* >>> >>> Tamay Ozgokmen >>> Associate Professor >>> Division of Meteorology and Physical Oceanography >>> Rosenstiel School of Marine and Atmospheric Science >>> 4600 Rickenbacker Causeway >>> Miami, FL 33149-1098, USA >>> Phone : 305 421 4053 >>> Fax : 305 421 4696 >>> Email : tozgokmen at rsmas.miami.edu >>> Web : http://www.rsmas.miami.edu/personal/tamay >>> >> > > ******************************************************************************* > > Tamay Ozgokmen > Associate Professor > Division of Meteorology and Physical Oceanography > Rosenstiel School of Marine and Atmospheric Science > 4600 Rickenbacker Causeway > Miami, FL 33149-1098, USA > Phone : 305 421 4053 > Fax : 305 421 4696 > Email : tozgokmen at rsmas.miami.edu > Web : http://www.rsmas.miami.edu/personal/tamay > From stefanke at lav.mavt.ethz.ch Thu Nov 26 11:10:28 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Thu, 26 Nov 2009 18:10:28 +0100 Subject: [Nek5000-users] nek5000 compilation In-Reply-To: <66921C71-47C2-489A-88D2-D27D316B48C3@rsmas.miami.edu> References: <294E6CEF-BE47-4573-A0A8-A8949BAED6EE@rsmas.miami.edu> <7815FD39-03A8-470B-8A18-2BB5B6D403BE@lav.mavt.ethz.ch> <9A006E7F-D883-4EE8-AA2D-49DAEFDE2E35@rsmas.miami.edu> <66921C71-47C2-489A-88D2-D27D316B48C3@rsmas.miami.edu> Message-ID: <9762F210-9ADC-4636-B895-7F125FD07AC5@lav.mavt.ethz.ch> Sorry my mistake. try again wit:h #include #include #include "jl/fname.h" #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) #if defined __GLIBC__ #include /* Obtain a backtrace and print it to stdout. */ void print_stack(void) { void *bt[50]; int i; int bt_size = backtrace(bt, 50); char **symbols = backtrace_symbols(bt, bt_size); printf ("backtrace(): obtained %d stack frames.\n", bt_size); for (i=0; i It seems to get stuck again (compiler.out attached) > > I replaced nek5_svn/trunk/nek/chelpers.c by what you sent, > did make clean and ./makenek userfile.... > > > > > On Nov 26, 2009, at 11:47 AM, stefanke wrote: > >> Ok it's indeed a non-glibc platform. >> >> Please replace your chelpers.c (source file in the trunk) by >> >> #include >> #include >> #include >> #include "jl/fname.h" >> >> #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) >> >> /* Obtain a backtrace and print it to stdout. */ >> void print_stack(void) >> { >> #if defined __GLIBC__ >> void *bt[50]; >> int i; >> int bt_size = backtrace(bt, 50); >> char **symbols = backtrace_symbols(bt, bt_size); >> >> printf ("backtrace(): obtained %d stack frames.\n", bt_size); >> for (i=0; i> free (symbols); >> #endif >> } >> >> >> and try again. >> >> #Stefan >> >> >> On Nov 26, 2009, at 5:43 PM, Tamay Ozgokmen wrote: >> >>> >>> It is Apple Mac OS X 10.3.9 >>> >>> (sysx is based on a bunch of Macs.. strange but it works OK...) >>> >>> On Nov 26, 2009, at 11:40 AM, stefanke wrote: >>> >>>> What's your OS (operating system)? >>>> >>>> >>>> On Nov 26, 2009, at 5:25 PM, Tamay Ozgokmen wrote: >>>> >>>>> >>>>> Hi Stefan, >>>>> >>>>> I am unable to answer this question since I know nothing about C or glibc :) >>>>> I also tried with mpicc (instead of mpixlc) with similar results. >>>>> It supposed to be a system based on Power G4 (similar to IBM P4 and P5) chips with >>>>> IBM compilers, I am not sure what exactly is installed. The website is (if any use): >>>>> >>>>> http://www.arc.vt.edu/arc/SystemX/ >>>>> >>>>> I have been running various versions of nek5000 on this for several years. >>>>> A makefile that I use to compile an older version of nek500 is attached, >>>>> if it can provide any clues on how to fix this... >>>>> >>>>> Thanks, >>>>> Tamay >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> On Nov 26, 2009, at 11:16 AM, stefanke wrote: >>>>> >>>>>> "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file not found. >>>>>> >>>>>> It seems like your running on a non-glibc platform. Right? >>>>>> >>>>>> #Stefan >>>>>> >>>>>> On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote: >>>>>> >>>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through >>>>>>> (compiler.out attached); any suggestions? >>>>>>> >>>>>>> Thanks! >>>>>>> Tamay >>>>>>> >>>>>>> >>>>>>> ********************************************************************************************************** >>>>>>> >>>>>>> #!/bin/bash >>>>>>> # >>>>>>> # nek5000 build script >>>>>>> # (c) 2008,2009 UCHICAGO ARGONNE, LLC >>>>>>> # >>>>>>> >>>>>>> # source path >>>>>>> SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" >>>>>>> >>>>>>> # plug-in list >>>>>>> PLUGIN_LIST="" >>>>>>> >>>>>>> # pre-processor symbol list >>>>>>> PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM >>>>>>> >>>>>>> # Fortran compiler >>>>>>> F77="mpif77" >>>>>>> >>>>>>> # C compiler >>>>>>> CC="mpixlc" >>>>>>> >>>>>>> ****************************************************************************************************************** >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Nek5000-users mailing list >>>>>>> Nek5000-users at lists.mcs.anl.gov >>>>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >>>>>> >>>>> >>>>> ******************************************************************************* >>>>> >>>>> Tamay Ozgokmen >>>>> Associate Professor >>>>> Division of Meteorology and Physical Oceanography >>>>> Rosenstiel School of Marine and Atmospheric Science >>>>> 4600 Rickenbacker Causeway >>>>> Miami, FL 33149-1098, USA >>>>> Phone : 305 421 4053 >>>>> Fax : 305 421 4696 >>>>> Email : tozgokmen at rsmas.miami.edu >>>>> Web : http://www.rsmas.miami.edu/personal/tamay >>>>> >>>> >>> >>> ******************************************************************************* >>> >>> Tamay Ozgokmen >>> Associate Professor >>> Division of Meteorology and Physical Oceanography >>> Rosenstiel School of Marine and Atmospheric Science >>> 4600 Rickenbacker Causeway >>> Miami, FL 33149-1098, USA >>> Phone : 305 421 4053 >>> Fax : 305 421 4696 >>> Email : tozgokmen at rsmas.miami.edu >>> Web : http://www.rsmas.miami.edu/personal/tamay >>> >> > > ******************************************************************************* > > Tamay Ozgokmen > Associate Professor > Division of Meteorology and Physical Oceanography > Rosenstiel School of Marine and Atmospheric Science > 4600 Rickenbacker Causeway > Miami, FL 33149-1098, USA > Phone : 305 421 4053 > Fax : 305 421 4696 > Email : tozgokmen at rsmas.miami.edu > Web : http://www.rsmas.miami.edu/personal/tamay > From stefanke at lav.mavt.ethz.ch Thu Nov 26 11:22:25 2009 From: stefanke at lav.mavt.ethz.ch (stefanke) Date: Thu, 26 Nov 2009 18:22:25 +0100 Subject: [Nek5000-users] nek5000 compilation - success!! In-Reply-To: <3D39F949-9F1C-4645-8B82-2AF5C45324F4@rsmas.miami.edu> References: <294E6CEF-BE47-4573-A0A8-A8949BAED6EE@rsmas.miami.edu> <7815FD39-03A8-470B-8A18-2BB5B6D403BE@lav.mavt.ethz.ch> <9A006E7F-D883-4EE8-AA2D-49DAEFDE2E35@rsmas.miami.edu> <66921C71-47C2-489A-88D2-D27D316B48C3@rsmas.miami.edu> <9762F210-9ADC-4636-B895-7F125FD07AC5@lav.mavt.ethz.ch> <3D39F949-9F1C-4645-8B82-2AF5C45324F4@rsmas.miami.edu> Message-ID: <8466F43F-B230-420D-8441-C87F79E04F9B@lav.mavt.ethz.ch> Yes you PBS job file looks ok. I will submit the fix to the repo. Stefan On Nov 26, 2009, at 6:16 PM, Tamay Ozgokmen wrote: > > It worked!!! It is always a great feeling when that happens :) > Thanks Stefan!! Really appreciate this! > > So I need to run it now - I have a simple script (see below) that I > submit with qsub, it should work, right? > > sysx1:~/nek_examples/mli ozgokmen$ cat neks > #!/bin/bash > #PBS -lnodes=48:ppn=2 > #PBS -lwalltime=00:95:00 > #PBS -W group_list=tcf_user > #PBS -q production_q > #PBS -A vpit1010 > NUM_NODES=`/bin/cat $PBS_NODEFILE | /usr/bin/wc -l | /usr/bin/sed "s/ //g"` > cd $PBS_O_WORKDIR > export PATH=/nfs/software/bin:$PATH > echo mli65-sgsd-p > SESSION.NAME > echo `pwd`'/' >> SESSION.NAME > rm -f logfile > rm -f ioinfo > > /bin/echo starting > /bin/date > /bin/echo > > jmdrun -np $NUM_NODES \ > -hostfile $PBS_NODEFILE \ > ./nek5000 &> mli65-sgsd-p.log > > /bin/echo > /bin/date > /bin/echo ending > > exit; > > > > > > > On Nov 26, 2009, at 12:10 PM, stefanke wrote: > >> #include >> #include >> #include "jl/fname.h" >> >> #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) >> >> #if defined __GLIBC__ >> >> #include >> /* Obtain a backtrace and print it to stdout. */ >> void print_stack(void) >> { >> void *bt[50]; >> int i; >> int bt_size = backtrace(bt, 50); >> char **symbols = backtrace_symbols(bt, bt_size); >> >> printf ("backtrace(): obtained %d stack frames.\n", bt_size); >> for (i=0; i> free (symbols); >> } >> #else >> void print_stack(){}; >> #endif > > > From nek5000-users at lists.mcs.anl.gov Fri Nov 27 08:34:49 2009 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 27 Nov 2009 15:34:49 +0100 Subject: [Nek5000-users] Tecplot-Format Message-ID: <20091127153449.w2i03cfj5wo4g0ow@webmail.uni-karlsruhe.de> Hello Stefan, only a short question: Does there exist a converter for the output files of NEK5000 to Tecplot format? Or do I have to generate with POSTNEK a vtk file and then convert it with Paraview or something similar?? Thanks a lot. Greets, Fred From nek5000-users at lists.mcs.anl.gov Fri Nov 27 08:36:05 2009 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Fri, 27 Nov 2009 15:36:05 +0100 Subject: [Nek5000-users] Tecplot-Format In-Reply-To: <20091127153449.w2i03cfj5wo4g0ow@webmail.uni-karlsruhe.de> References: <20091127153449.w2i03cfj5wo4g0ow@webmail.uni-karlsruhe.de> Message-ID: <21438AC7-0C4F-446D-8659-1B1709CD0499@lav.mavt.ethz.ch> Check the Wiki (Data Analysis and Visualization Tools section). #Stefan On Nov 27, 2009, at 3:34 PM, nek5000-users at lists.mcs.anl.gov wrote: > Hello Stefan, > > only a short question: Does there exist a converter for the output files of NEK5000 to > Tecplot format? Or do I have to generate with POSTNEK a vtk file and then convert it with > Paraview or something similar?? > > Thanks a lot. > > > Greets, Fred > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users at lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users From nek5000-users at lists.mcs.anl.gov Thu Nov 12 10:43:26 2009 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 12 Nov 2009 16:43:26 -0000 Subject: [Nek5000-users] Nekmerge question Message-ID: <1258044178.4afc3b1260ffc@webmail.vt.edu> Dear developers, I was working on getting familiar with nekmerge, but I am having trouble with a simple test case. Would you take a look at the messages I got? Trying the attached 3D cases, the result is: " [mschwaenen at dugglebylab4 mergetest]$ nekmerge ascii or binary output ? (a/b): a Input new (output) file name: test Input source .rea file name or press enter to continue: 1d Input source .rea file name or press enter to continue: 2d Input source .rea file name or press enter to continue: locglob: 1 1 1 864 locglob: 1 2 19 864 locglob: 1 3 123 864 locglob: 2 1 528 864 locglob: 2 2 528 864 locglob: 2 3 528 864 locglob: 3 1 528 864 locglob: 3 2 528 864 locglob: 3 3 528 864 done locglob_lexico: 528 528 864 At line 573 of file nekmerge.f Fortran runtime error: End of record 2D does not work either (1.rea and 2.rea): nekmerge ascii or binary output ? (a/b): a Input new (output) file name: test Input source .rea file name or press enter to continue: 1 Input source .rea file name or press enter to continue: 2 Input source .rea file name or press enter to continue: locglob: 1 1 1 144 locglob: 1 2 52 144 locglob: 2 1 96 144 locglob: 2 2 96 144 done locglob_lexico: 96 96 144 FACE ERROR: 1 3 28 12 " Thank you, Markus Schwaenen -------------- next part -------------- A non-text attachment was scrubbed... Name: 1.rea Type: application/octet-stream Size: 11954 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 1d.rea Type: application/octet-stream Size: 59261 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 2.rea Type: application/octet-stream Size: 13934 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 2d.rea Type: application/octet-stream Size: 73293 bytes Desc: not available URL: From nek5000-users at lists.mcs.anl.gov Thu Nov 26 08:46:15 2009 From: nek5000-users at lists.mcs.anl.gov (nek5000-users at lists.mcs.anl.gov) Date: Thu, 26 Nov 2009 09:46:15 -0500 Subject: [Nek5000-users] makenek for systemX Message-ID: <3F004F71-B82D-4A2E-9D6F-1BF79F61C764@rsmas.miami.edu> Dear developers, I started using the latest version of nek5000 yesterday, shifting from one that I got from Paul about 2 years ago (I have been running nek5000 since 2002 or so). Paul compiled it on my 8-processor workstation using PG. After a short warm up, I want to run on systemX which is based on IBM compilers. Attached is the makefile that I have been using on systemX for the older nek5000 version. Can you suggest changes in the makefile that came with the svn version to compile on sysX? Thanks!! ps: the new nek5000 is looking very good! Tamay Ozgokmen Associate Professor Division of Meteorology and Physical Oceanography Rosenstiel School of Marine and Atmospheric Science 4600 Rickenbacker Causeway Miami, FL 33149-1098, USA Phone : 305 421 4053 Fax : 305 421 4696 Email : tozgokmen at rsmas.miami.edu Web : http://www.rsmas.miami.edu/personal/tamay -------------- next part -------------- A non-text attachment was scrubbed... Name: makefile.sysx Type: application/octet-stream Size: 11581 bytes Desc: not available URL: -------------- next part --------------