<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#FFFFFF">
Justin, in your sites entry below, this line looks suspect:<br>
<br>
<workdirectory>/brashear/usrname</workdirectory><br>
<br>
That needs to be the name of a writable directory.<br>
<br>
- Mike<br>
<br>
<br>
<div class="moz-cite-prefix">On 9/28/14, 6:03 PM, Justin bbt wrote:<br>
</div>
<blockquote
cite="mid:CABubRoAygNQTA2D92szo-UkD=ruhwSfafiAuDm4v4eXRK9Y5dA@mail.gmail.com"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
<div dir="ltr">changing the queue to "batch", I get this
<div><span class="im"
style="font-family:arial,sans-serif;font-size:12.7272720336914px">
<div>Execution failed:</div>
<div>Exception in simulate:</div>
<div> Arguments: [--timesteps, 1, --range, 100,
--nvalues, 5]</div>
<div> Host: black</div>
</span>
<div
style="font-family:arial,sans-serif;font-size:12.7272720336914px">
Directory: p4-run026/jobs/5/simulate-58d6x2yl</div>
<span class="im"
style="font-family:arial,sans-serif;font-size:12.7272720336914px">
<div><span style="white-space:pre-wrap"> </span>exception @
swift-int-staging.k, line: 181</div>
<div>Caused by: </div>
<div><span style="white-space:pre-wrap"> </span>exception @
swift-int-staging.k, line: 177</div>
<div>Caused by: null</div>
</span>
<div
style="font-family:arial,sans-serif;font-size:12.7272720336914px">Caused
by:
org.globus.cog.abstraction.impl.common.execution.JobException:
Job failed with an exit code of 1</div>
</div>
<div
style="font-family:arial,sans-serif;font-size:12.7272720336914px"><br>
</div>
<div
style="font-family:arial,sans-serif;font-size:12.7272720336914px">???? </div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Sat, Sep 27, 2014 at 5:17 PM, Mihael
Hategan <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:hategan@mcs.anl.gov" target="_blank">hategan@mcs.anl.gov</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Justin,<br>
<br>
Is there a queue named "normal" on that machine (qstat -q
should tell<br>
you)?<br>
<span class="HOEnZb"><font color="#888888"><br>
Mihael<br>
</font></span>
<div class="HOEnZb">
<div class="h5"><br>
On Sat, 2014-09-27 at 15:41 -0400, Justin bbt wrote:<br>
> So, I am using this config<br>
><br>
><br>
> <pool handle="black"><br>
> <execution provider="coaster"
jobmanager="local:pbs" URL="none"/><br>
> <profile namespace="env"
key="PATHPREFIX">{env.PWD}/../app</profile><br>
> <profile namespace="globus"
key="jobsPerNode">1</profile><br>
> <profile namespace="globus"
key="queue">normal</profile><br>
> <profile namespace="globus"
key="ppn">16</profile><br>
> <profile namespace="globus"
key="maxWallTime">00:01:00</profile><br>
> <profile namespace="globus"
key="maxTime">3600</profile><br>
> <profile namespace="globus"
key="lowOverAllocation">100</profile><br>
> <profile namespace="globus"
key="highOverAllocation">100</profile><br>
> <profile namespace="globus"
key="slots">2</profile><br>
> <profile namespace="globus"
key="maxNodes">1</profile><br>
> <profile namespace="globus"
key="nodeGranularity">1</profile><br>
> <profile namespace="karajan"
key="jobThrottle">.320</profile><br>
> <profile namespace="karajan"
key="initialScore">10000</profile><br>
> <profile namespace="globus"
key="slots">1</profile><br>
> <profile namespace="globus"
key="project">TG-CCR134513</profile><br>
>
<workdirectory>/brashear/usrname</workdirectory><br>
> <profile namespace="swift"
key="stagingMethod">local</profile><br>
> <filesystem provider="local" /><br>
> </pool><br>
><br>
> but, it does not work and give this error :<br>
><br>
> Swift 0.95 RC6 swift-r7900 cog-r3908<br>
> RunID: run011<br>
> Warning: The @ syntax for function invocation is
deprecated<br>
> [Error] sites.xml, line 2, col 10: cvc-elt.1:
Cannot find the declaration<br>
> of element 'config'.<br>
> Progress: Sat, 27 Sep 2014 15:35:52-0400<br>
><br>
> Could not submit job (qsub reported an exit code of
170).<br>
> qsub: Unknown queue MSG=cannot locate queue<br>
><br>
> Execution failed:<br>
> Exception in simulate:<br>
> Arguments: [--timesteps, 1, --range, 100,
--nvalues, 5]<br>
> Host: black<br>
> Directory: p4-run011/jobs/s/simulate-sdm041yl<br>
> exception @ swift-int-staging.k, line: 181<br>
> Caused by:<br>
> exception @ swift-int-staging.k, line: 177<br>
> Caused by: Block task failed: Error submitting
block task<br>
>
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
Could<br>
> not submit job (qsub reported an exit code of 170).<br>
> qsub: Unknown queue MSG=cannot locate queue<br>
><br>
> at<br>
>
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)<br>
> at<br>
>
org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45)<br>
> at<br>
>
org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:61)<br>
> at<br>
>
org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:70)<br>
> Caused by:<br>
>
org.globus.cog.abstraction.impl.scheduler.common.ProcessException:
Could<br>
> not submit job (qsub reported an exit code of 170).<br>
> qsub: Unknown queue MSG=cannot locate queue<br>
><br>
> at<br>
>
org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:113)<br>
> at<br>
>
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)<br>
> ... 3 more<br>
><br>
><br>
><br>
> also, in some configs I saw this. But I dont know
what this is and what<br>
> values should I set to<br>
><br>
> <profile namespace="globus"<br>
>
key="providerAttributes">pbs.aprun;pbs.mpp;depth=32</profile><br>
><br>
><br>
> On Tue, Sep 23, 2014 at 6:22 PM, Justin bbt <<a
moz-do-not-send="true"
href="mailto:justinbbt@gmail.com">justinbbt@gmail.com</a>>
wrote:<br>
><br>
> > Thank you very much.<br>
> ><br>
> > I am actually using the Blacklight, which I
guess is PBS based.<br>
> > So, should I use the Crays tutorial and
setting ?<br>
> > <a moz-do-not-send="true"
href="http://swift-lang.org/tutorials/cray/tutorial.html"
target="_blank">http://swift-lang.org/tutorials/cray/tutorial.html</a><br>
> ><br>
> > On Tue, Sep 23, 2014 at 10:31 AM, Ketan
Maheshwari <<a moz-do-not-send="true"
href="mailto:ketan@mcs.anl.gov">ketan@mcs.anl.gov</a>><br>
> > wrote:<br>
> ><br>
> >> Hi Justin,<br>
> >><br>
> >> If you are using xsede Stampede regular
nodes (non xeon phi), here is a<br>
> >> site configuration that has worked for me
in the past, connecting over ssh<br>
> >> to slurm:<br>
> >><br>
> >> <?xml version="1.0"
encoding="UTF-8"?><br>
> >> <config xmlns="<a
moz-do-not-send="true"
href="http://www.ci.uchicago.edu/swift/SwiftSites"
target="_blank">http://www.ci.uchicago.edu/swift/SwiftSites</a>"><br>
> >> <pool handle="stampede"><br>
> >> <execution provider="coaster"
jobmanager="ssh-cl:slurm" url="<br>
> >> <a moz-do-not-send="true"
href="http://stampede.tacc.utexas.edu" target="_blank">stampede.tacc.utexas.edu</a>"/><br>
> >> <filesystem provider="local" /><br>
> >> <profile namespace="globus"
key="jobsPerNode">1</profile><br>
> >> <profile namespace="globus"
key="ppn">1</profile><br>
> >> <profile namespace="globus"
key="maxTime">7500</profile><br>
> >> <profile namespace="globus"
key="maxwalltime">00:10:00</profile><br>
> >> <profile namespace="globus"
key="lowOverallocation">100</profile><br>
> >> <profile namespace="globus"
key="highOverallocation">100</profile><br>
> >> <profile namespace="globus"
key="queue">normal</profile><br>
> >> <profile namespace="globus"
key="nodeGranularity">1</profile><br>
> >> <profile namespace="globus"
key="maxNodes">1</profile><br>
> >> <profile namespace="globus"
key="slots">1</profile><br>
> >> <profile namespace="globus"
key="project">TG-EAR130015</profile><br>
> >> <profile namespace="karajan"
key="jobThrottle">.3199</profile><br>
> >> <profile namespace="karajan"
key="initialScore">10000</profile><br>
> >>
<workdirectory>/tmp/{env.USER}/swift.work</workdirectory><br>
> >> </pool><br>
> >> </config><br>
> >><br>
> >> You will need to replace project id with
yours.<br>
> >><br>
> >> Thanks,<br>
> >> Ketan<br>
> >><br>
> >> On Mon, Sep 22, 2014 at 8:32 PM, Justin
bbt <<a moz-do-not-send="true"
href="mailto:justinbbt@gmail.com">justinbbt@gmail.com</a>>
wrote:<br>
> >><br>
> >>> Hi<br>
> >>><br>
> >>> If I want to use resources on the
xsede<br>
> >>> <a moz-do-not-send="true"
href="https://www.xsede.org/overview" target="_blank">https://www.xsede.org/overview</a><br>
> >>> which site config should I use ?<br>
> >>><br>
> >>><br>
> >>>
_______________________________________________<br>
> >>> Swift-user mailing list<br>
> >>> <a moz-do-not-send="true"
href="mailto:Swift-user@ci.uchicago.edu">Swift-user@ci.uchicago.edu</a><br>
> >>> <a moz-do-not-send="true"
href="https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user"
target="_blank">https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user</a><br>
> >>><br>
> >><br>
> >><br>
> ><br>
> _______________________________________________<br>
> Swift-user mailing list<br>
> <a moz-do-not-send="true"
href="mailto:Swift-user@ci.uchicago.edu">Swift-user@ci.uchicago.edu</a><br>
> <a moz-do-not-send="true"
href="https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user"
target="_blank">https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user</a><br>
<br>
<br>
</div>
</div>
</blockquote>
</div>
<br>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
Swift-user mailing list
<a class="moz-txt-link-abbreviated" href="mailto:Swift-user@ci.uchicago.edu">Swift-user@ci.uchicago.edu</a>
<a class="moz-txt-link-freetext" href="https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user">https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user</a></pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Michael Wilde
Mathematics and Computer Science Computation Institute
Argonne National Laboratory The University of Chicago
</pre>
</body>
</html>