<div dir="ltr">Hi Guilherme,<div><br></div><div>I'm not immediately sure it's failing to link inputs. Could you please send a log file from when this happens so I can take a closer look?</div><div><br></div><div>Thanks,</div>
<div>David</div><div> </div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Apr 10, 2014 at 2:08 PM, Guilherme Gall <span dir="ltr"><<a href="mailto:gmgall@lncc.br" target="_blank">gmgall@lncc.br</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="">-----BEGIN PGP SIGNED MESSAGE-----<br>
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</div>Em 04-04-2014 02:18, David Kelly escreveu:<br>
<div class="">> Hi Guilherme,<br>
><br>
> There was one setting (pe) that was undocumented and not yet in the<br>
> new config. I've just added this and updated the user guide. I've<br>
> attached a swift.properties file that I believe should work for you<br>
> with the latest 0.95 and trunk. Please let me know if you have any<br>
> issues.<br>
><br>
> I will add something to the user guide soon that makes it easier<br>
> to translate settings directly from sites.xml to the new<br>
> swift.properties format.<br>
><br>
> Thanks, David<br>
><br>
><br>
<br>
</div>Hi David,<br>
<br>
The swift.properties that you sent me seems to work.<br>
<br>
But now I'm having another problem that wasn't happening before.<br>
Follows the error message that I receive sometimes:<br>
<br>
- ----------<br>
RunID: run011<br>
Progress: Qui, 10 abr 2014 14:58:18-0300<br>
Progress: Qui, 10 abr 2014 14:58:19-0300 Stage in:1<br>
Progress: Qui, 10 abr 2014 14:58:20-0300 Active:1<br>
<br>
Execution failed:<br>
Exception in generate_requests:<br>
Arguments: [-o, teste.txt, --min_occurrences, 10, --map_list,<br>
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio12.asc,workshop/Brasil_ASC/bio2.asc,<br>
- -m, workshop/Brasil_ASC/bio9.asc, --output_format_file,<br>
workshop/Brasil_ASC/bio10.asc, --output_map_list,<br>
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio3.asc,<br>
- --output_mask_file, workshop/Brasil_ASC/bio8.asc]<br>
Host: sunhpc<br>
Directory:<br>
workflow-openmodeller-run011/jobs/b/generate_requests-b6u6c1pl<br>
exception @ swift-int.k, line: 520<br>
Caused by: Failed to link input file workshop/Brasil_ASC/alt.asc<br>
throw @ swift-int.k, line: 68<br>
<br>
k:assign @ swift.k, line: 194<br>
Caused by: Exception in generate_requests:<br>
Arguments: [-o, teste.txt, --min_occurrences, 10, --map_list,<br>
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio12.asc,workshop/Brasil_ASC/bio2.asc,<br>
- -m, workshop/Brasil_ASC/bio9.asc, --output_format_file,<br>
workshop/Brasil_ASC/bio10.asc, --output_map_list,<br>
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio3.asc,<br>
- --output_mask_file, workshop/Brasil_ASC/bio8.asc]<br>
Host: sunhpc<br>
Directory:<br>
workflow-openmodeller-run011/jobs/b/generate_requests-b6u6c1pl<br>
exception @ swift-int.k, line: 520<br>
Caused by: Failed to link input file workshop/Brasil_ASC/alt.asc<br>
throw @ swift-int.k, line: 68<br>
<br>
- ----------<br>
<br>
This is happening in 2 different environments with Swift installed.<br>
Both with recent code from trunk. One of them is using revision 7758<br>
and another 7759 (both from April 2014).<br>
<br>
There is a third machine using Swift revision 7575 that works<br>
perfectly. That was the environment that I used to develop my Swift<br>
script[1]. It always worked fine there.<br>
<br>
Is there the possibility of a recent change has generated a bug?<br>
<br>
Best regasrds,<br>
<br>
[1]<br>
<a href="https://github.com/sibbr/sdm-workflows/blob/master/workflow-openmodeller.swift" target="_blank">https://github.com/sibbr/sdm-workflows/blob/master/workflow-openmodeller.swift</a><br>
<div class="">- --<br>
Guilherme Gall<br>
CSR/LNCC<br>
GPG Public Key ID: A65ED0D5<br>
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