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Let's add a bugzilla entry to make sure this error is reported
clearly. <br>
<br>
On 02/11/2014 11:12 AM, Ketan Maheshwari wrote:<br>
</div>
<blockquote
cite="mid:CAMUuviqTSywjm7hbEepCk2nX1cMMxrOxERsnVZKxxMDe92-exA@mail.gmail.com"
type="cite">
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charset=ISO-8859-1">
<div dir="ltr">This was fixed after changing the default project
from the expired atpesc to ExM.
<div><br>
</div>
<div>Thanks!</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Tue, Feb 11, 2014 at 10:51 AM, David
Kelly <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:davidkelly@uchicago.edu" target="_blank">davidkelly@uchicago.edu</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div class="">
<div dir="ltr">The Cobalt provider submits jobs via the
command line rather than a submit script, so I believe
empty submit scripts are normal. From the log it looks
like jobs are getting submitted and getting a job
number. Are you running from a filesystem that is shared
on worker nodes?</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">
<div class="">On Tue, Feb 11, 2014 at 10:12 AM, Ketan
Maheshwari <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:ketan@mcs.anl.gov" target="_blank">ketan@mcs.anl.gov</a>></span>
wrote:<br>
</div>
<div>
<div class="h5">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Swift Tutorial scripts worked on
Tukey as of last August during the ATPESC
tutorials.
<div>
<br>
</div>
<div>
I find that empty Cobalt submit script files
are created.</div>
</div>
<div>
<div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Tue, Feb 11,
2014 at 9:27 AM, Justin M Wozniak <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:wozniak@mcs.anl.gov"
target="_blank">wozniak@mcs.anl.gov</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<div>
<div><br>
Has anyone else run successfully
on Tukey? <br>
<br>
Can you inspect/post the
Swift-generated Cobalt submit
script? You may also want to
inspect/post the Cobalt-generated
*.submit.stdout/*.submit.stderr
logs.<br>
<br>
On 02/10/2014 08:23 PM, Ketan
Maheshwari wrote:<br>
</div>
</div>
<blockquote type="cite">
<div>
<div>
<div dir="ltr">Hi,
<div><br>
</div>
<div>Trying some Swift test
for Swift-Galaxy demo on
Tukey. Using local:cobalt
coaster provider. I am
getting the following error:</div>
<div><br>
</div>
<div>
<div>$ swift -sites.file
sites.xml -tc.file tc
-config cf script.swift</div>
<div>Swift 0.94 swift-r6637
cog-r3742</div>
<div><br>
</div>
<div>RunID:
20140211-0216-ryo7slj7</div>
<div>Progress: time: Tue,
11 Feb 2014 02:16:53 +0000</div>
<div>Progress: time: Tue,
11 Feb 2014 02:17:23 +0000
Submitted:3</div>
<div>Progress: time: Tue,
11 Feb 2014 02:17:53 +0000
Submitted:3</div>
<div>Progress: time: Tue,
11 Feb 2014 02:17:58 +0000
Submitted:2 Active:1</div>
<div>Execution failed:</div>
<div><span
style="white-space:pre-wrap">
</span>Exception in sh:</div>
<div> Arguments:
[gpfs/mira-home/ketan/galaxy-dist/database/files/000/dataset_1.dat,
0]</div>
<div> Host: tukey</div>
<div> Directory:
script-20140211-0216-ryo7slj7/jobs/u/sh-uv25u9ml</div>
<div>Caused by:</div>
<div> <span
style="white-space:pre-wrap">
</span>Block task failed:</div>
<div><br>
</div>
<div><br>
</div>
<div><span
style="white-space:pre-wrap">
</span>anapp,
script.swift, line 13</div>
</div>
<div><br>
</div>
<div>Tried many different
options in swift.properties
to no avail. </div>
<div><br>
</div>
<div>Also tried the ATPESC
2013 tutorial setup but
scripts fail with same
pattern/error messages.</div>
<div><br>
</div>
<div>Attaching the tarball
with config, sites file.</div>
<div><br>
</div>
<div>Thanks for any
suggestions.</div>
<div><br>
</div>
<div>Ketan</div>
</div>
<br>
<fieldset></fieldset>
<br>
</div>
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<pre cols="72">--
Justin M Wozniak</pre>
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<pre class="moz-signature" cols="72">--
Justin M Wozniak</pre>
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