2013-07-04 14:09:26,270+0530 DEBUG Loader arguments: [minotaur-single.swift] 2013-07-04 14:09:26,273+0530 DEBUG Loader Max heap: 954466304 2013-07-04 14:09:26,274+0530 DEBUG textfiles BEGIN SWIFTSCRIPT: type messagefile; app (messagefile t) solve_instance(string fname) { bnb fname stdout=@filename(t); } string name ="b.txt c.txt"; messagefile fi[]; string prob[]=["/home/nikhil/BatchS121208M.nl","/home/nikhil/BatchS151208M.nl"]; foreach f in prob{ messagefile c; c=solve_instance(f); } 2013-07-04 14:09:26,274+0530 DEBUG textfiles END SWIFTSCRIPT: 2013-07-04 14:09:26,292+0530 INFO Loader minotaur-single.swift: source file is new. Recompiling. 2013-07-04 14:09:27,818+0530 DEBUG Loader Swift configuration ([]): {pgraph.node.options=color="seagreen", style="filled", clustering.min.time=60, clustering.queue.delay=4, sites.file=/home/nikhil/Downloads/swift-0.94/bin/../etc/sites.xml, ticker.prefix=Progress: time:, provenance.log=false, kickstart.enabled=maybe, tc.file=/home/nikhil/Downloads/swift-0.94/bin/../etc/tc.data, foreach.max.threads=16384, lazy.errors=false, ticker.date.format=, sitedir.keep=false, throttle.score.job.factor=0.2, kickstart.always.transfer=false, throttle.host.submit=2, replication.limit=3, clustering.enabled=false, pgraph=false, file.gc.enabled=true, replication.min.queue.time=60, wrapper.parameter.mode=args, replication.enabled=false, throttle.transfers=4, wrapperlog.always.transfer=false, throttle.submit=4, pgraph.graph.options=splines="compound", rankdir="TB", caching.algorithm=LRU, logfile=minotaur-single-20130704-1409-hvnhyhb3.log, use.wrapper.staging=false, tracing.enabled=true, provider.staging.pin.swiftfiles=false, wrapper.invocation.mode=absolute, mapping.checker=on, execution.retries=0, cdm.broadcast.mode=file, status.mode=files, use.provider.staging=false, throttle.file.operations=8} 2013-07-04 14:09:27,818+0530 DEBUG textfiles using default sites file 2013-07-04 14:09:27,824+0530 DEBUG VDL2ExecutionContext Stack dump: Level 1 [iA = 0, iB = 0, bA = false, bB = false] vdl:instanceconfig = Swift configuration ([]): {pgraph.node.options=color="seagreen", style="filled", clustering.min.time=60, clustering.queue.delay=4, sites.file=/home/nikhil/Downloads/swift-0.94/bin/../etc/sites.xml, ticker.prefix=Progress: time:, provenance.log=false, kickstart.enabled=maybe, tc.file=/home/nikhil/Downloads/swift-0.94/bin/../etc/tc.data, foreach.max.threads=16384, lazy.errors=false, ticker.date.format=, sitedir.keep=false, throttle.score.job.factor=0.2, kickstart.always.transfer=false, throttle.host.submit=2, replication.limit=3, clustering.enabled=false, pgraph=false, file.gc.enabled=true, replication.min.queue.time=60, wrapper.parameter.mode=args, replication.enabled=false, throttle.transfers=4, wrapperlog.always.transfer=false, throttle.submit=4, pgraph.graph.options=splines="compound", rankdir="TB", caching.algorithm=LRU, logfile=minotaur-single-20130704-1409-hvnhyhb3.log, use.wrapper.staging=false, tracing.enabled=true, provider.staging.pin.swiftfiles=false, wrapper.invocation.mode=absolute, mapping.checker=on, execution.retries=0, cdm.broadcast.mode=file, status.mode=files, use.provider.staging=false, throttle.file.operations=8} vdl:operation = run swift.home = /home/nikhil/Downloads/swift-0.94/bin/.. PATH_SEPARATOR = / 2013-07-04 14:09:27,825+0530 INFO VDL2ExecutionContext swift.home = /home/nikhil/Downloads/swift-0.94/bin/.. 2013-07-04 14:09:28,560+0530 INFO swift Using sites file: /home/nikhil/Downloads/swift-0.94/bin/../etc/sites.xml 2013-07-04 14:09:28,644+0530 INFO swift Using tc.data: /home/nikhil/Downloads/swift-0.94/bin/../etc/tc.data 2013-07-04 14:09:28,772+0530 WARN File Warning: malformed tc.data file on line 21 2013-07-04 14:09:28,774+0530 INFO AbstractScheduler Setting resources to: {localhost=localhost} 2013-07-04 14:09:29,427+0530 INFO swift Swift 0.94 swift-r6492 cog-r3658 2013-07-04 14:09:29,429+0530 INFO swift RUNID id=run:20130704-1409-hvnhyhb3 2013-07-04 14:09:29,467+0530 INFO TRACE VARIABLE, line 6, thread main, name INITIALIZED 2013-07-04 14:09:29,467+0530 INFO TRACE DECLARE, line 6, thread main, name 2013-07-04 14:09:29,471+0530 INFO TRACE DECLARE, line 7, thread main, fi 2013-07-04 14:09:29,479+0530 INFO TRACE VARIABLE, line 7, thread main, fi WAIT name 2013-07-04 14:09:29,479+0530 INFO TRACE DECLARE, line 8, thread main, prob 2013-07-04 14:09:29,479+0530 INFO TRACE VARIABLE, line 8, thread main, prob INITIALIZED 2013-07-04 14:09:29,556+0530 INFO TRACE ASSIGN, line 7, thread 0-0, name = "b.txt c.txt" 2013-07-04 14:09:29,557+0530 INFO RuntimeStats$ProgressTicker 2013-07-04 14:09:29,557+0530 INFO TRACE VARIABLE, line 6, thread main, name INITIALIZED 2013-07-04 14:09:29,558+0530 INFO TRACE VARIABLE, line 7, thread main, fi INITIALIZED 2013-07-04 14:09:29,558+0530 INFO TRACE VARIABLE, line 7, thread main, fi MAPPING [0], file://localhost/b.txt 2013-07-04 14:09:29,559+0530 INFO TRACE VARIABLE, line 7, thread main, fi MAPPING [1], file://localhost/c.txt 2013-07-04 14:09:29,559+0530 INFO TRACE ASSIGN, line 9, thread 0-1, prob = ? 2013-07-04 14:09:29,563+0530 DEBUG swift FOREACH_IT_START line=9 thread=0-2-0 2013-07-04 14:09:29,563+0530 DEBUG swift FOREACH_IT_START line=9 thread=0-2-1 2013-07-04 14:09:29,563+0530 DEBUG swift SCOPE thread=0-2-0 2013-07-04 14:09:29,563+0530 DEBUG swift SCOPE thread=0-2-1 2013-07-04 14:09:29,568+0530 INFO TRACE VARIABLE, line 10, thread 2-1, c WAIT swift#mapper#17003 2013-07-04 14:09:29,568+0530 INFO TRACE DECLARE, line 10, thread 2-1, c 2013-07-04 14:09:29,569+0530 INFO TRACE VARIABLE, line 10, thread 2-0, c WAIT swift#mapper#17003 2013-07-04 14:09:29,569+0530 INFO TRACE DECLARE, line 10, thread 2-0, c 2013-07-04 14:09:29,574+0530 INFO TRACE APPCALL, line 3, thread 0-2-1-3, solve_instance(fname = "/home/nikhil/BatchS151208M.nl") 2013-07-04 14:09:29,574+0530 DEBUG swift PROCEDURE line=3 thread=0-2-1-3 name=solve__instance 2013-07-04 14:09:29,576+0530 INFO TRACE VARIABLE, line 10, thread 2-1, c INITIALIZED 2013-07-04 14:09:29,579+0530 INFO TRACE VARIABLE, line 10, thread 2-0, c INITIALIZED 2013-07-04 14:09:29,581+0530 INFO TRACE APPCALL, line 3, thread 0-2-0-3, solve_instance(fname = "/home/nikhil/BatchS121208M.nl") 2013-07-04 14:09:29,581+0530 DEBUG swift PROCEDURE line=3 thread=0-2-0-3 name=solve__instance 2013-07-04 14:09:29,589+0530 INFO TRACE VARIABLE, line 10, thread 2-1, c MAPPING $, file://localhost/home/nikhil/BatchS151208M.txt 2013-07-04 14:09:29,589+0530 INFO TRACE VARIABLE, line 10, thread 2-0, c MAPPING $, file://localhost/home/nikhil/BatchS121208M.txt 2013-07-04 14:09:29,594+0530 INFO swift START thread=0-2-0-3 tr=bnb 2013-07-04 14:09:29,596+0530 INFO swift START thread=0-2-1-3 tr=bnb 2013-07-04 14:09:29,610+0530 INFO WeightedHostScoreScheduler Sorted: [localhost:0.000(1.000):0/1 overload: 0] 2013-07-04 14:09:29,610+0530 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=localhost, score=1.000 2013-07-04 14:09:29,613+0530 INFO GlobalSubmitQueue No global submit throttle set. Using default (1024) 2013-07-04 14:09:29,614+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,617+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,621+0530 INFO swift START host=localhost - Initializing shared directory 2013-07-04 14:09:29,635+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,676+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,680+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,683+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,688+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,692+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,694+0530 INFO swift END host=localhost - Done initializing shared directory 2013-07-04 14:09:29,695+0530 DEBUG swift THREAD_ASSOCIATION jobid=bnb-trvj3ubl thread=0-2-1-3-1 host=localhost replicationGroup=rrvj3ubl 2013-07-04 14:09:29,701+0530 INFO swift START jobid=bnb-trvj3ubl host=localhost - Initializing directory structure 2013-07-04 14:09:29,703+0530 INFO swift START path=home/nikhil dir=minotaur-single-20130704-1409-hvnhyhb3/shared - Creating directory structure 2013-07-04 14:09:29,703+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:09:29,704+0530 INFO swift END jobid=bnb-trvj3ubl - Done initializing directory structure 2013-07-04 14:09:29,705+0530 INFO swift START jobid=bnb-trvj3ubl - Staging in files 2013-07-04 14:09:29,707+0530 INFO swift END jobid=bnb-trvj3ubl - Staging in finished 2013-07-04 14:09:29,709+0530 DEBUG swift JOB_START jobid=bnb-trvj3ubl tr=bnb arguments=[/home/nikhil/BatchS151208M.nl] tmpdir=minotaur-single-20130704-1409-hvnhyhb3/jobs/t/bnb-trvj3ubl host=localhost 2013-07-04 14:09:29,713+0530 DEBUG textfiles BEGIN TC: #This is the transformation catalog. # #It comes pre-configured with a number of simple transformations with #paths that are likely to work on a linux box. However, on some systems, #the paths to these executables will be different (for example, sometimes #some of these programs are found in /usr/bin rather than in /bin) # #NOTE WELL: fields in this file must be separated by tabs, not spaces; and #there must be no trailing whitespace at the end of each line. # # sitename transformation path INSTALLED platform profiles localhost echo /bin/echo INSTALLED INTEL32::LINUX null localhost cat /bin/cat INSTALLED INTEL32::LINUX null localhost ls /bin/ls INSTALLED INTEL32::LINUX null localhost grep /bin/grep INSTALLED INTEL32::LINUX null localhost sort /bin/sort INSTALLED INTEL32::LINUX null localhost paste /bin/paste INSTALLED INTEL32::LINUX null localhost cp /bin/cp INSTALLED INTEL32::LINUX null localhost touch /bin/touch INSTALLED INTEL32::LINUX null localhost wc /usr/bin/wc INSTALLED INTEL32::LINUX null localhost tr /usr/bin/tr INSTALLED INTEL32::LINUX null localhost bnb /home/nikhil/minotaur-parallel/minotaur-0.1.1-linux-x86_64/bin/bnb INSTALLED INTEL32::LINUX null localhost sleep /bin/sleep null null null 2013-07-04 14:09:29,713+0530 DEBUG textfiles END TC: 2013-07-04 14:09:29,714+0530 WARN File Warning: malformed tc.data file on line 21 2013-07-04 14:09:29,724+0530 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-1-3-1-1372927168593) is /bin/bash shared/_swiftwrap bnb-trvj3ubl -jobdir t -scratch -e /home/nikhil/minotaur-parallel/minotaur-0.1.1-linux-x86_64/bin/bnb -out home/nikhil/BatchS151208M.txt -err stderr.txt -i -d home/nikhil -if -of home/nikhil/BatchS151208M.txt -k -cdmfile -status files -a /home/nikhil/BatchS151208M.nl 2013-07-04 14:09:29,731+0530 INFO JobSubmissionTaskHandler Submit: in: /var/tmp/minotaur-single-20130704-1409-hvnhyhb3 command: /bin/bash /var/tmp/minotaur-single-20130704-1409-hvnhyhb3/shared/_swiftwrap bnb-trvj3ubl -jobdir t -scratch -e /home/nikhil/minotaur-parallel/minotaur-0.1.1-linux-x86_64/bin/bnb -out home/nikhil/BatchS151208M.txt -err stderr.txt -i -d home/nikhil -if -of home/nikhil/BatchS151208M.txt -k -cdmfile -status files -a /home/nikhil/BatchS151208M.nl 2013-07-04 14:09:59,557+0530 INFO RuntimeStats$ProgressTicker Selecting site:1 Active:1 2013-07-04 14:10:29,558+0530 INFO RuntimeStats$ProgressTicker Selecting site:1 Active:1 2013-07-04 14:10:59,558+0530 INFO RuntimeStats$ProgressTicker Selecting site:1 Active:1 2013-07-04 14:11:29,558+0530 INFO RuntimeStats$ProgressTicker Selecting site:1 Active:1 2013-07-04 14:11:59,558+0530 INFO RuntimeStats$ProgressTicker Selecting site:1 Active:1 2013-07-04 14:12:26,334+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:12:26,336+0530 INFO RuntimeStats$ProgressTicker Selecting site:1 Checking status:1 2013-07-04 14:12:26,339+0530 DEBUG swift START jobid=bnb-trvj3ubl 2013-07-04 14:12:26,343+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:12:26,345+0530 INFO swift SUCCESS jobid=bnb-trvj3ubl - Success file found 2013-07-04 14:12:26,347+0530 DEBUG swift STAGING_OUT jobid=bnb-trvj3ubl 2013-07-04 14:12:26,349+0530 INFO swift START jobid=bnb-trvj3ubl - Staging out files 2013-07-04 14:12:26,350+0530 DEBUG swift stageouts: [[$, c:messagefile - Open]] 2013-07-04 14:12:26,362+0530 DEBUG swift FILE_STAGE_OUT_START srcname=BatchS151208M.txt srcdir=minotaur-single-20130704-1409-hvnhyhb3/shared/home/nikhil srchost=localhost destdir=home/nikhil desthost=localhost provider=file 2013-07-04 14:12:26,365+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:12:26,381+0530 DEBUG swift CDM: file://localhost/home/nikhil/BatchS151208M.txt : DEFAULT 2013-07-04 14:12:26,384+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:12:26,385+0530 DEBUG swift FILE_STAGE_OUT_END srcname=BatchS151208M.txt srcdir=minotaur-single-20130704-1409-hvnhyhb3/shared/home/nikhil srchost=localhost destdir=home/nikhil desthost=localhost provider=file 2013-07-04 14:12:26,387+0530 INFO LateBindingScheduler jobs queued: 1 2013-07-04 14:12:26,391+0530 INFO swift END jobid=bnb-trvj3ubl - Staging out finished 2013-07-04 14:12:26,394+0530 DEBUG swift JOB_END jobid=bnb-trvj3ubl 2013-07-04 14:12:26,395+0530 INFO swift END_SUCCESS thread=0-2-1-3 tr=bnb 2013-07-04 14:12:26,397+0530 DEBUG swift PROCEDURE_END line=3 thread=0-2-1-3 name=solve__instance 2013-07-04 14:12:26,397+0530 INFO CleanDataset Cleaning c:messagefile - Closed 2013-07-04 14:12:26,397+0530 DEBUG swift FOREACH_IT_END line=9 thread=0-2-1 2013-07-04 14:12:26,771+0530 INFO WeightedHostScoreScheduler Sorted: [localhost:1.100(1.887):0/1 overload: 0] 2013-07-04 14:12:26,771+0530 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=localhost, score=1.887 2013-07-04 14:12:26,781+0530 DEBUG swift THREAD_ASSOCIATION jobid=bnb-urvj3ubl thread=0-2-0-3-1 host=localhost replicationGroup=srvj3ubl 2013-07-04 14:12:26,795+0530 INFO swift START jobid=bnb-urvj3ubl host=localhost - Initializing directory structure 2013-07-04 14:12:26,797+0530 INFO swift END jobid=bnb-urvj3ubl - Done initializing directory structure 2013-07-04 14:12:26,799+0530 INFO swift START jobid=bnb-urvj3ubl - Staging in files 2013-07-04 14:12:26,802+0530 INFO swift END jobid=bnb-urvj3ubl - Staging in finished 2013-07-04 14:12:26,804+0530 DEBUG swift JOB_START jobid=bnb-urvj3ubl tr=bnb arguments=[/home/nikhil/BatchS121208M.nl] tmpdir=minotaur-single-20130704-1409-hvnhyhb3/jobs/u/bnb-urvj3ubl host=localhost 2013-07-04 14:12:26,817+0530 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-0-3-1-1372927168604) is /bin/bash shared/_swiftwrap bnb-urvj3ubl -jobdir u -scratch -e /home/nikhil/minotaur-parallel/minotaur-0.1.1-linux-x86_64/bin/bnb -out home/nikhil/BatchS121208M.txt -err stderr.txt -i -d home/nikhil -if -of home/nikhil/BatchS121208M.txt -k -cdmfile -status files -a /home/nikhil/BatchS121208M.nl 2013-07-04 14:12:26,819+0530 INFO JobSubmissionTaskHandler Submit: in: /var/tmp/minotaur-single-20130704-1409-hvnhyhb3 command: /bin/bash /var/tmp/minotaur-single-20130704-1409-hvnhyhb3/shared/_swiftwrap bnb-urvj3ubl -jobdir u -scratch -e /home/nikhil/minotaur-parallel/minotaur-0.1.1-linux-x86_64/bin/bnb -out home/nikhil/BatchS121208M.txt -err stderr.txt -i -d home/nikhil -if -of home/nikhil/BatchS121208M.txt -k -cdmfile -status files -a /home/nikhil/BatchS121208M.nl 2013-07-04 14:12:29,559+0530 INFO RuntimeStats$ProgressTicker Active:1 Finished successfully:1 2013-07-04 14:12:59,559+0530 INFO RuntimeStats$ProgressTicker Active:1 Finished successfully:1 2013-07-04 14:13:10,025+0530 INFO LateBindingScheduler jobs queued: 0 2013-07-04 14:13:10,026+0530 INFO RuntimeStats$ProgressTicker Checking status:1 Finished successfully:1 2013-07-04 14:13:10,029+0530 DEBUG swift START jobid=bnb-urvj3ubl 2013-07-04 14:13:10,031+0530 INFO LateBindingScheduler jobs queued: 0 2013-07-04 14:13:10,032+0530 INFO swift SUCCESS jobid=bnb-urvj3ubl - Success file found 2013-07-04 14:13:10,033+0530 DEBUG swift STAGING_OUT jobid=bnb-urvj3ubl 2013-07-04 14:13:10,035+0530 INFO swift START jobid=bnb-urvj3ubl - Staging out files 2013-07-04 14:13:10,036+0530 DEBUG swift stageouts: [[$, c:messagefile - Open]] 2013-07-04 14:13:10,044+0530 DEBUG swift FILE_STAGE_OUT_START srcname=BatchS121208M.txt srcdir=minotaur-single-20130704-1409-hvnhyhb3/shared/home/nikhil srchost=localhost destdir=home/nikhil desthost=localhost provider=file 2013-07-04 14:13:10,045+0530 INFO LateBindingScheduler jobs queued: 0 2013-07-04 14:13:10,046+0530 DEBUG swift CDM: file://localhost/home/nikhil/BatchS121208M.txt : DEFAULT 2013-07-04 14:13:10,052+0530 INFO LateBindingScheduler jobs queued: 0 2013-07-04 14:13:10,054+0530 DEBUG swift FILE_STAGE_OUT_END srcname=BatchS121208M.txt srcdir=minotaur-single-20130704-1409-hvnhyhb3/shared/home/nikhil srchost=localhost destdir=home/nikhil desthost=localhost provider=file 2013-07-04 14:13:10,059+0530 INFO LateBindingScheduler jobs queued: 0 2013-07-04 14:13:10,061+0530 INFO swift END jobid=bnb-urvj3ubl - Staging out finished 2013-07-04 14:13:10,063+0530 DEBUG swift JOB_END jobid=bnb-urvj3ubl 2013-07-04 14:13:10,063+0530 INFO swift END_SUCCESS thread=0-2-0-3 tr=bnb 2013-07-04 14:13:10,064+0530 DEBUG swift PROCEDURE_END line=3 thread=0-2-0-3 name=solve__instance 2013-07-04 14:13:10,064+0530 INFO CleanDataset Cleaning c:messagefile - Closed 2013-07-04 14:13:10,064+0530 DEBUG swift FOREACH_IT_END line=9 thread=0-2-0 2013-07-04 14:13:10,065+0530 INFO RuntimeStats$ProgressTicker Finished successfully:2 2013-07-04 14:13:10,161+0530 DEBUG swift Starting cleanups 2013-07-04 14:13:10,162+0530 INFO swift START cleanups=[[minotaur-single-20130704-1409-hvnhyhb3, localhost]] 2013-07-04 14:13:10,164+0530 INFO swift START dir=minotaur-single-20130704-1409-hvnhyhb3 host=localhost 2013-07-04 14:13:10,164+0530 DEBUG swift cdmfile 2013-07-04 14:13:10,166+0530 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-1-1372927168615) is /bin/rm -rf minotaur-single-20130704-1409-hvnhyhb3 2013-07-04 14:13:10,166+0530 INFO JobSubmissionTaskHandler Submit: in: /var/tmp command: /bin/rm -rf minotaur-single-20130704-1409-hvnhyhb3 2013-07-04 14:13:10,166+0530 INFO LateBindingScheduler jobs queued: 0 2013-07-04 14:13:10,167+0530 INFO swift END dir=minotaur-single-20130704-1409-hvnhyhb3 host=localhost 2013-07-04 14:13:10,167+0530 INFO swift END cleanups=[[minotaur-single-20130704-1409-hvnhyhb3, localhost]] 2013-07-04 14:13:10,167+0530 DEBUG swift Ending cleanups 2013-07-04 14:13:10,168+0530 INFO CleanDataset Cleaning fi:messagefile[int] - Closed 2013-07-04 14:13:10,168+0530 INFO CleanDataset Cleaning prob:string[int] - Closed 2013-07-04 14:13:10,170+0530 INFO Loader Swift finished with no errors