Hello swift support,<div><br></div><div>This is my first attempt getting swift to work on Fusion, and I'm getting the following output to the terminal:</div><div><br></div><div>------</div><div><br></div><div><div>Warning: Function toint is deprecated, at line 10</div>
<div>Swift trunk swift-r5882 cog-r3434</div><div><br></div><div>RunID: 20120912-1032-5y7xb1ug</div><div>Progress:  time: Wed, 12 Sep 2012 10:32:51 -0500</div><div>Progress:  time: Wed, 12 Sep 2012 10:32:54 -0500  Selecting site:34  Submitted:8</div>
<div>Progress:  time: Wed, 12 Sep 2012 10:32:57 -0500  Selecting site:34  Submitted:8</div><div>Progress:  time: Wed, 12 Sep 2012 10:33:00 -0500  Selecting site:34  Submitted:8</div><div>...</div><div>Progress:  time: Wed, 12 Sep 2012 10:40:33 -0500  Selecting site:34  Submitted:8</div>
<div>Failed to shut down block: Block 0912-321051-000005 (8x60.000s)</div><div>org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Failed to cancel task. qdel returned with an exit code of 153</div><div><span class="Apple-tab-span" style="white-space:pre">       </span>at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:205)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85)</div><div><span class="Apple-tab-span" style="white-space:pre">        </span>at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:102)</div><div><span class="Apple-tab-span" style="white-space:pre">    </span>at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:91)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:46)</div><div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:320)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.coaster.service.job.manager.Node.errorReceived(Node.java:100)</div><div><span class="Apple-tab-span" style="white-space:pre">  </span>at org.globus.cog.karajan.workflow.service.commands.Command.errorReceived(Command.java:203)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.karajan.workflow.service.channels.ChannelContext.notifyListeners(ChannelContext.java:237)</div><div><span class="Apple-tab-span" style="white-space:pre">  </span>at org.globus.cog.karajan.workflow.service.channels.ChannelContext.notifyRegisteredCommandsAndHandlers(ChannelContext.java:225)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.karajan.workflow.service.channels.ChannelContext.channelShutDown(ChannelContext.java:318)</div><div><span class="Apple-tab-span" style="white-space:pre">  </span>at org.globus.cog.karajan.workflow.service.channels.ChannelManager.handleChannelException(ChannelManager.java:293)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleChannelException(AbstractKarajanChannel.java:552)</div><div><span class="Apple-tab-span" style="white-space:pre">   </span>at org.globus.cog.karajan.workflow.service.channels.NIOSender.run(NIOSender.java:140)</div>
<div>Progress:  time: Wed, 12 Sep 2012 10:40:36 -0500  Selecting site:34  Submitted:8</div><div>Progress:  time: Wed, 12 Sep 2012 10:40:39 -0500  Selecting site:34  Submitted:8</div><div>Progress:  time: Wed, 12 Sep 2012 10:40:42 -0500  Selecting site:34  Submitted:8</div>
<div>...</div></div><div><div>Progress:  time: Wed, 12 Sep 2012 10:41:42 -0500  Selecting site:34  Submitted:8</div><div>Progress:  time: Wed, 12 Sep 2012 10:41:45 -0500  Selecting site:34  Submitted:8</div><div>Failed to shut down block: Block 0912-321051-000006 (8x60.000s)</div>
<div>org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Failed to cancel task. qdel returned with an exit code of 153</div><div><span class="Apple-tab-span" style="white-space:pre">     </span>at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:205)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85)</div><div><span class="Apple-tab-span" style="white-space:pre">        </span>at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:102)</div><div><span class="Apple-tab-span" style="white-space:pre">    </span>at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:91)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:46)</div><div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:320)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.abstraction.coaster.service.job.manager.Node.errorReceived(Node.java:100)</div><div><span class="Apple-tab-span" style="white-space:pre">  </span>at org.globus.cog.karajan.workflow.service.commands.Command.errorReceived(Command.java:203)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.karajan.workflow.service.channels.ChannelContext.notifyListeners(ChannelContext.java:237)</div><div><span class="Apple-tab-span" style="white-space:pre">  </span>at org.globus.cog.karajan.workflow.service.channels.ChannelContext.notifyRegisteredCommandsAndHandlers(ChannelContext.java:225)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.karajan.workflow.service.channels.ChannelContext.channelShutDown(ChannelContext.java:318)</div><div><span class="Apple-tab-span" style="white-space:pre">  </span>at org.globus.cog.karajan.workflow.service.channels.ChannelManager.handleChannelException(ChannelManager.java:293)</div>
<div><span class="Apple-tab-span" style="white-space:pre">      </span>at org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleChannelException(AbstractKarajanChannel.java:552)</div><div><span class="Apple-tab-span" style="white-space:pre">   </span>at org.globus.cog.karajan.workflow.service.channels.NIOSender.run(NIOSender.java:140)</div>
<div>Progress:  time: Wed, 12 Sep 2012 10:41:48 -0500  Selecting site:34  Submitted:8</div><div>Progress:  time: Wed, 12 Sep 2012 10:41:51 -0500  Selecting site:34  Submitted:8</div><div>Progress:  time: Wed, 12 Sep 2012 10:41:54 -0500  Selecting site:34  Submitted:8</div>
<div>...</div></div><div><br></div><div>------</div><div><br></div><div>I understand the long lines of unchanging "Progress: ..." reports - the shared queue is busy, and so I am not expecting my job to be executed right away. However, I don't understand why I'm getting these "failed to cancel task" errors. I gave each individual app well more than enough time for it to run to completion. And while I set the timelimit on the entire process to be much smaller than it needs</div>
<div>(<profile namespace="globus" key="maxTime">60</profile> in sites.xml, when the process could run for days)</div><div>I presumed the entire process would just get shut down after 60 seconds of runtime. Why is this cropping up? Thanks,</div>
<div><br></div><div>Jonathan</div>