<html><head></head><body bgcolor="#FFFFFF"><div>Do you have imagemagick installed on your personal computer and in you PATH?<br><br>On May 9, 2012, at 18:56, Heather Stoller <<a href="mailto:heather.stoller@gmail.com">heather.stoller@gmail.com</a>> wrote:<br><br></div><div></div><blockquote type="cite"><div>Hi David,<br><br>Thank you - this is on my local machine. An ls from home gives:<br><br>hstoller@ubuntu:~$ ls<br>Desktop Documents Downloads modis Music Pictures Public swift-0.93 swiftwork Templates Videos<br><br>
--Heather<br><br><div class="gmail_quote">On Wed, May 9, 2012 at 4:54 PM, David Kelly <span dir="ltr"><<a href="mailto:davidk@ci.uchicago.edu" target="_blank">davidk@ci.uchicago.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Thanks - which machine are you testing this on?<br>
<div class="im HOEnZb"><br>
----- Original Message -----<br>
> From: "Heather Stoller" <<a href="mailto:heather.stoller@gmail.com">heather.stoller@gmail.com</a>><br>
</div><div class="HOEnZb"><div class="h5">> To: "David Kelly" <<a href="mailto:davidk@ci.uchicago.edu">davidk@ci.uchicago.edu</a>><br>
> Cc: "Jonathan Monette" <<a href="mailto:jonmon@mcs.anl.gov">jonmon@mcs.anl.gov</a>>, <a href="mailto:swift-user@ci.uchicago.edu">swift-user@ci.uchicago.edu</a><br>
> Sent: Wednesday, May 9, 2012 6:46:24 PM<br>
> Subject: Re: [Swift-user] MODIS demo<br>
> Hi David,<br>
><br>
> Here are the contents of my tc.local file. Jonathan, I have duly<br>
> checked that lazy.errors = false. Thank you both!<br>
><br>
> # site transformation path obsolete fields for compatibility<br>
><br>
> localhost echo /bin/echo null null null<br>
> localhost cat /bin/cat null null null<br>
> localhost ls /bin/ls null null null<br>
> localhost grep /bin/grep null null null<br>
> localhost sort /bin/sort null null null<br>
> localhost paste /bin/paste null null null<br>
> localhost pwd /bin/pwd null null null<br>
><br>
> # For cluster usage<br>
><br>
> #pbs getlanduse /home/hstoller/swift/demo/modis/bin/getlanduse.sh null<br>
> null null<br>
> #pbs analyzelanduse<br>
> /home/hstoller/swift/demo/modis/bin/analyzelanduse.sh null null null<br>
> #pbs colormodis /home/hstoller/swift/demo/modis/bin/colormodis.sh null<br>
> null null<br>
> #pbs assemble /home/hstoller/swift/demo/modis/bin/assemble.sh null<br>
> null null<br>
><br>
> # For localhost testing<br>
><br>
> localhost getlanduse /home/hstoller/modis/bin/getlanduse.sh null null<br>
> null<br>
> localhost analyzelanduse /home/hstoller/modis/bin/analyzelanduse2.sh<br>
> null null null<br>
> localhost colormodis /home/hstoller/modis/bin/colormodis.sh null null<br>
> null<br>
> localhost assemble /home/hstoller/modis/bin/assemble2.sh null null<br>
> null<br>
> localhost markmap /home/hstoller/modis/bin/markmap.sh null null null<br>
><br>
><br>
><br>
> On Wed, May 9, 2012 at 3:56 PM, David Kelly < <a href="mailto:davidk@ci.uchicago.edu">davidk@ci.uchicago.edu</a> ><br>
> wrote:<br>
><br>
><br>
> Heather,<br>
><br>
> Can you please paste the contents of your tc.local file?<br>
><br>
> Thanks,<br>
><br>
> David<br>
><br>
> ----- Original Message -----<br>
> > From: "Heather Stoller" < <a href="mailto:heather.stoller@gmail.com">heather.stoller@gmail.com</a> ><br>
> > To: <a href="mailto:swift-user@ci.uchicago.edu">swift-user@ci.uchicago.edu</a><br>
><br>
><br>
> > Cc: "David Kelly" < <a href="mailto:davidk@ci.uchicago.edu">davidk@ci.uchicago.edu</a> >, "Jonathan Monette" <<br>
> > <a href="mailto:jonmon@mcs.anl.gov">jonmon@mcs.anl.gov</a> ><br>
> > Sent: Wednesday, May 9, 2012 5:30:40 PM<br>
> > Subject: Re: [Swift-user] MODIS demo<br>
> > Hello Swift Group, coming back to MODIS:<br>
> ><br>
> > I followed Jonathan's advice to set retries to 0 and looked at the<br>
> > wrapper section in the files in the *.d directory as per David's<br>
> > advice and now get an error right away, as follows:<br>
> > hstoller@ubuntu:~/modis$ ./demo.local urban 4<br>
> > runid=modis-2012.0509.1527-urban-4-10<br>
> > Swift 0.93 swift-r5483 cog-r3339<br>
> ><br>
> > RunID: 20120509-1527-bsxjpz4g<br>
> > (input): found 0 files<br>
> > Progress: time: Wed, 09 May 2012 15:27:53 -0700<br>
> > Progress: time: Wed, 09 May 2012 15:27:54 -0700 Submitting:7<br>
> > Submitted:1<br>
> > Progress: time: Wed, 09 May 2012 15:27:55 -0700 Active:7 Checking<br>
> > status:1<br>
> > Progress: time: Wed, 09 May 2012 15:27:56 -0700 Stage in:1 Checking<br>
> > status:3 Stage out:1 Finished successfully:4<br>
> > Execution failed:<br>
> > Progress: time: Wed, 09 May 2012 15:27:57 -0700 Checking status:1<br>
> > Failed:4 Finished successfully:4<br>
> > File not found:<br>
> > /home/hstoller/swiftwork/modis-20120509-1527-bsxjpz4g/shared/landuse/h15v05.color.png<br>
> > Progress: time: Wed, 09 May 2012 15:28:00 -0700 Initializing:1<br>
> > Failed:4 Finished successfully:5<br>
> ><br>
> > I think my question is, where should that shared/landuse directory<br>
> > be<br>
> > getting the missing file?<br>
> ><br>
> > Thank you for your help!<br>
> ><br>
> > Sincerely,<br>
> > Heather<br>
> ><br>
> ><br>
> ><br>
> ><br>
> > On Fri, Apr 13, 2012 at 10:17 PM, Jonathan Monette <<br>
> > <a href="mailto:jonmon@mcs.anl.gov">jonmon@mcs.anl.gov</a> > wrote:<br>
> ><br>
> ><br>
> > I echo David's suggestion but would like to add another. It looks<br>
> > like<br>
> > soft error handling is being used which may not be the best approach<br>
> > when exploring Swift. In the config file you should set the retry<br>
> > count to 0 and set lazy.errors=false. This will cause Swift to fail<br>
> > as<br>
> > soon as the first error is encountered and will provide an error<br>
> > message. This is useful for when you are exploring Swift behavior.<br>
> ><br>
> ><br>
> ><br>
> > On Apr 13, 2012, at 23:17, David Kelly < <a href="mailto:davidk@ci.uchicago.edu">davidk@ci.uchicago.edu</a> ><br>
> > wrote:<br>
> ><br>
> > > Heather,<br>
> > ><br>
> > > You might want to check the path names in the tc.local file. Since<br>
> > > about half the tasks fail, I'm guessing either colormodis or<br>
> > > getlanduse is pointing to the wrong place. You can verify this by<br>
> > > looking at the directory called modis-2012<timestamp>.d. In there<br>
> > > is<br>
> > > a list of files that end with -info. Look at the "Wrapper" section<br>
> > > of these files and you should find more information about what is<br>
> > > causing the failures.<br>
> > ><br>
> > > David<br>
> > ><br>
> > > ----- Original Message -----<br>
> > >> From: "Heather Stoller" < <a href="mailto:heather.stoller@gmail.com">heather.stoller@gmail.com</a> ><br>
> > >> To: <a href="mailto:swift-user@ci.uchicago.edu">swift-user@ci.uchicago.edu</a><br>
> > >> Sent: Thursday, April 5, 2012 9:37:33 AM<br>
> > >> Subject: [Swift-user] MODIS demo<br>
> > >> Hello,<br>
> > >><br>
> > >> I'm a UC student working with Mike Wilde doing some Swift stuff -<br>
> > >> at<br>
> > >> present, I'm trying to run the demo to see what can be seen. I<br>
> > >> get:<br>
> > >><br>
> > >> ^Cheather@ubuntu:~/modis$ ./demo.local urban 10<br>
> > >> runid=modis-2012.0405.0704-urban-10-10<br>
> > >> Swift 0.93 swift-r5483 cog-r3339<br>
> > >><br>
> > >> RunID: 20120405-0704-drh1g0ob<br>
> > >> (input): found 0 files<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:48 -0700<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:49 -0700 Stage in:19<br>
> > >> Submitting:1<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:50 -0700 Stage in:13<br>
> > >> Submitting:1 Active:6<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:53 -0700 Stage in:10<br>
> > >> Submitting:2 Submitted:2 Active:6<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:54 -0700 Stage in:6<br>
> > >> Submitting:1 Submitted:2 Active:9 Checking status:2<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:55 -0700 Stage in:2<br>
> > >> Submitting:2 Submitted:1 Active:9 Checking status:3 Stage out:3<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:57 -0700 Submitting:1<br>
> > >> Submitted:2 Active:9 Checking status:1 Stage out:7<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:58 -0700 Active:3 Checking<br>
> > >> status:2 Stage out:7 Finished successfully:7 Failed but can<br>
> > >> retry:1<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:04:59 -0700 Stage in:2<br>
> > >> Submitting:2 Submitted:1 Active:3 Stage out:1 Finished<br>
> > >> successfully:10<br>
> > >> Failed but can retry:2<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:05:00 -0700 Active:10 Stage<br>
> > >> out:1<br>
> > >> Finished successfully:10<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:05:01 -0700 Active:9 Checking<br>
> > >> status:2 Finished successfully:11<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:05:02 -0700 Submitting:1<br>
> > >> Active:3<br>
> > >> Checking status:3 Stage out:2 Finished successfully:11 Failed but<br>
> > >> can<br>
> > >> retry:2<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:05:03 -0700 Stage in:2<br>
> > >> Active:6<br>
> > >> Stage out:1 Finished successfully:11 Failed but can retry:2<br>
> > >> Execution failed:<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:05:04 -0700 Active:7 Checking<br>
> > >> status:2 Stage out:1 Failed:1 Finished successfully:11<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:05:05 -0700 Active:3 Checking<br>
> > >> status:1 Stage out:3 Failed:4 Finished successfully:11<br>
> > >> Progress: time: Thu, 05 Apr 2012 07:05:06 -0700 Failed:11<br>
> > >> Finished<br>
> > >> successfully:11<br>
> > >><br>
> > >> lots of "failed but can retry". Does this look right?<br>
> > >><br>
> > >> --<br>
</div></div></blockquote></div><br>
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