<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div><span>Thank you. I was not aware about that.</span></div><div><br><span></span></div><div><span>Now I am getting the error below. Am I missing some configurations ?</span></div><div><br><span></span></div><div><span>Thank you</span></div><div><span>Emalayan<br></span></div><div><br><span></span></div><div><span><span style="color: rgb(0, 0, 191); font-style: italic;">Swift trunk swift-r5662 (swift modified locally) cog-r3361 (cog modified locally)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">RunID: 20120224-0021-jtfvfc90</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Progress: time: Fri, 24 Feb 2012 00:21:32 +0000</span><br
style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Find: http://172.17.3.12:12346</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Find: keepalive(120), reconnect - http://172.17.3.12:12346</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-leiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-qeiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-jeiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to
transfer wrapper log for job cat-meiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-oeiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-peiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-keiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-seiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-neiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span
style="color: rgb(0, 0, 191); font-style: italic;">Progress: time: Fri, 24 Feb 2012 00:21:33 +0000 Stage in:3 Submitting:5 Failed but can retry:2</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-reiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-3fiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-7fiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-8fiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style:
italic;">Failed to transfer wrapper log for job cat-bfiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-zeiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-0fiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-afiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-yeiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-1fiykink</span><br style="color: rgb(0, 0, 191); font-style:
italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-dfiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Failed to transfer wrapper log for job cat-ffiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">EXCEPTION Exception in cat:</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Arguments: [data.txt]</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Host: persistent-coasters</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Directory: 001-catsn-surveyor-20120224-0021-jtfvfc90/jobs/f/cat-ffiykink</span><br style="color: rgb(0, 0, 191); font-style:
italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">stderr.txt: </span><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">stdout.txt: </span><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">----</span><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Caused by: Task failed: null</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">org.globus.cog.karajan.workflow.service.channels.ChannelException: Channel died and no contact available</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191);
font-style: italic;"> at org.globus.cog.karajan.workflow.service.channels.ChannelManager.connect(ChannelManager.java:234)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> at org.globus.cog.karajan.workflow.service.channels.ChannelManager.reserveChannel(ChannelManager.java:256)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> at org.globus.cog.karajan.workflow.service.channels.ChannelManager.reserveChannel(ChannelManager.java:226)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> at org.globus.cog.abstraction.coaster.service.job.manager.Node.getChannel(Node.java:132)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style:
italic;"> at org.globus.cog.abstraction.coaster.service.job.manager.Cpu.submit(Cpu.java:258)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> at org.globus.cog.abstraction.coaster.service.job.manager.Cpu.launchSequential(Cpu.java:213)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> at org.globus.cog.abstraction.coaster.service.job.manager.Cpu.launch(Cpu.java:199)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> at org.globus.cog.abstraction.coaster.service.job.manager.Cpu.pull(Cpu.java:169)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> at
org.globus.cog.abstraction.coaster.service.job.manager.PullThread.run(PullThread.java:114)</span><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Execution failed:</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;"> Failed to transfer wrapper log for job cat-mfiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">EXCEPTION Exception in cat:</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Arguments: [data.txt]</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Host: persistent-coasters</span><br
style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">Directory: 001-catsn-surveyor-20120224-0021-jtfvfc90/jobs/m/cat-mfiykink</span><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">stderr.txt: </span><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">stdout.txt: </span><br style="color: rgb(0, 0, 191); font-style: italic;"><br style="color: rgb(0, 0, 191); font-style: italic;"><span style="color: rgb(0, 0, 191); font-style: italic;">----</span><br></span></div><div><br></div> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div dir="ltr"> <font size="2" face="Arial"> <hr size="1"> <b><span
style="font-weight:bold;">From:</span></b> Justin M Wozniak <wozniak@mcs.anl.gov><br> <b><span style="font-weight: bold;">To:</span></b> Emalayan Vairavanathan <svemalayan@yahoo.com> <br><b><span style="font-weight: bold;">Cc:</span></b> Jonathan Monette <jonmon@mcs.anl.gov>; swift user <swift-user@ci.uchicago.edu>; matei <matei@ece.ubc.ca> <br> <b><span style="font-weight: bold;">Sent:</span></b> Thursday, 23 February 2012 4:08 PM<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: WORKER_INIT_CMD - with log file<br> </font> </div> <br><br>Do the pool names agree? You may want to check that you are using the <br>right tc file. You might need tc.persistent.data .<br><br>On Thu, 23 Feb 2012, Emalayan Vairavanathan wrote:<br><br>> Hi Justin,<br>><br>> I copied swift-test from ~wozniak/Public/swift-test and try to run it. I followed the steps below.<br>><br>> - Modified the
coaster-service-conf<br>><br>> - Started the coaster service.<br>> - Started swift<br>><br>><br>> The tc.data has entries for cat but I am getting the error below. Do you have any ideas ?<br>><br>><br>> Thank you<br>> Emalayan<br>><br>> <a ymailto="mailto:emalayan@login2.surveyor" href="mailto:emalayan@login2.surveyor">emalayan@login2.surveyor</a>:~/swift-test> run.sh <br>><br>> Swift trunk swift-r5662 (swift modified locally) cog-r3361 (cog modified locally)<br>><br>> RunID: 20120224-0000-rec5hd4a<br>> Progress: time: Fri, 24 Feb 2012 00:00:45 +0000<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by:
org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by:
org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog <br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> Execution failed:<br>> EXCEPTION The application "cat" is not available in the given site/pool in your tc.data catalog<br>> Caused by: org.globus.cog.karajan.scheduler.NoSuchResourceException<br>> The application "cat" is not available in the given site/pool in your tc.data catalog <br>><br>><br>><br>><br>><br>> ________________________________<br>> From: Justin M Wozniak <<a ymailto="mailto:wozniak@mcs.anl.gov"
href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a>><br>> To: Jonathan Monette <<a ymailto="mailto:jonmon@mcs.anl.gov" href="mailto:jonmon@mcs.anl.gov">jonmon@mcs.anl.gov</a>> <br>> Cc: Emalayan Vairavanathan <<a ymailto="mailto:svemalayan@yahoo.com" href="mailto:svemalayan@yahoo.com">svemalayan@yahoo.com</a>>; matei <<a ymailto="mailto:matei@ece.ubc.ca" href="mailto:matei@ece.ubc.ca">matei@ece.ubc.ca</a>> <br>> Sent: Tuesday, 21 February 2012 12:40 PM<br>> Subject: Re: WORKER_INIT_CMD - with log file<br>> <br>> Hi guys<br>><br>> Yes, that version is based on trunk and is up-to-date with <br>> WORKER_INIT_CMD. The recent bug fix for the BG/P is in there, I just <br>> tested it.<br>><br>> I moved the location to ~wozniak/Public/swift . The test case I used is <br>> in ~wozniak/Public/swift-test . Both should be readable.<br>><br>>
Justin<br>><br>> On Mon, 20 Feb 2012, Jonathan Monette wrote:<br>><br>>> It might....that is a question that Justin can answer. If it doesn't I am sure the feature can be quickly added.<br>>><br>>> On Feb 20, 2012, at 5:40 PM, Emalayan Vairavanathan <<a ymailto="mailto:svemalayan@yahoo.com" href="mailto:svemalayan@yahoo.com">svemalayan@yahoo.com</a>> wrote:<br>>><br>>>> Hi Jon,<br>>>><br>>>> I didn't try with the swift-version available in Justin's home directory. I can try and tell it now.<br>>>><br>>>> But just a quick question: Does this version has WORKER_INIT_CMD ?<br>>>><br>>>> Thank you<br>>>> Emalayan<br>>>><br>>>> From: Jonathan Monette <<a ymailto="mailto:jonmon@mcs.anl.gov" href="mailto:jonmon@mcs.anl.gov">jonmon@mcs.anl.gov</a>><br>>>> To: Emalayan Vairavanathan <<a
ymailto="mailto:svemalayan@yahoo.com" href="mailto:svemalayan@yahoo.com">svemalayan@yahoo.com</a>><br>>>> Cc: Justin Wozniak <<a ymailto="mailto:wozniak@mcs.anl.gov" href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a>>; matei <<a ymailto="mailto:matei@ece.ubc.ca" href="mailto:matei@ece.ubc.ca">matei@ece.ubc.ca</a>><br>>>> Sent: Monday, 20 February 2012 3:35 PM<br>>>> Subject: Re: WORKER_INIT_CMD - with log file<br>>>><br>>>> I suggest to use the swift version in Justin's directory. This is the stable version for the bg/p. If you already are using it, then let me debug further.<br>>>><br>>>> What login host where you running on, login1 or login2?<br>>>><br>>>> On Feb 20, 2012, at 3:13 PM, Emalayan Vairavanathan <<a ymailto="mailto:svemalayan@yahoo.com" href="mailto:svemalayan@yahoo.com">svemalayan@yahoo.com</a>>
wrote:<br>>>><br>>>>><br>>>>> Hi Jon and Justin,<br>>>>><br>>>>> I checkout the swift-code from trunk and try to see whether ModFTDock+Swift works on Surveyor (without MosaStore). But the job did not complete for a long time.<br>>>>><br>>>>> Could you please have a look ?<br>>>>><br>>>>> (As I can remember, last time there was a bug when I tried to launch swift on Surveyor. Justin fixed the bug and asked me to use the swift executables from his home directory. May be this fix is not available in the trunk ?)<br>>>>><br>>>>> Thank you<br>>>>> Emalayan<br>>>>><br>>>>> From: Emalayan Vairavanathan <<a ymailto="mailto:svemalayan@yahoo.com" href="mailto:svemalayan@yahoo.com">svemalayan@yahoo.com</a>><br>>>>> To: Jonathan Monette <<a ymailto="mailto:jonmon@mcs.anl.gov"
href="mailto:jonmon@mcs.anl.gov">jonmon@mcs.anl.gov</a>>; "<a ymailto="mailto:emalayan@ece.ubc.ca" href="mailto:emalayan@ece.ubc.ca">emalayan@ece.ubc.ca</a>" <<a ymailto="mailto:emalayan@ece.ubc.ca" href="mailto:emalayan@ece.ubc.ca">emalayan@ece.ubc.ca</a>><br>>>>> Cc: Justin Wozniak <<a ymailto="mailto:wozniak@mcs.anl.gov" href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a>>; matei <<a ymailto="mailto:matei@ece.ubc.ca" href="mailto:matei@ece.ubc.ca">matei@ece.ubc.ca</a>>; MosaStore <<a ymailto="mailto:mosastore@googlegroups.com" href="mailto:mosastore@googlegroups.com">mosastore@googlegroups.com</a>><br>>>>> Sent: Monday, 13 February 2012 3:08 PM<br>>>>> Subject: Re: WORKER_INIT_CMD<br>>>>><br>>>>> Thank you very much Jon. I will ask you if I have questions.<br>>>>><br>>>>> Regards<br>>>>>
Emalayan<br>>>>><br>>>>> From: Jonathan Monette <<a ymailto="mailto:jonmon@mcs.anl.gov" href="mailto:jonmon@mcs.anl.gov">jonmon@mcs.anl.gov</a>><br>>>>> To: <a ymailto="mailto:emalayan@ece.ubc.ca" href="mailto:emalayan@ece.ubc.ca">emalayan@ece.ubc.ca</a><br>>>>> Cc: Justin Wozniak <<a ymailto="mailto:wozniak@mcs.anl.gov" href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a>><br>>>>> Sent: Sunday, 12 February 2012 4:50 PM<br>>>>> Subject: WORKER_INIT_CMD<br>>>>><br>>>>> Emalayan,<br>>>>> We have now added an environment variable to the worker script. The variable is called WORKER_INIT_CMD and works like so:<br>>>>><br>>>>> export WORKER_INIT_CMD=<path/to/script.to.run><br>>>>><br>>>>> The worker will then run this script before entering it's main loop that
waits for Swift apps to run. You have to use manual coasters to use this variable, which I believe you already are doing.<br>>>>><br>>>>> Let me know if you have any questions about this env variable.<br>>>>><br>>>>><br>>>>><br>>>>><br>>>>><br>>>>> <modftdock-log.tar.gz><br>>>><br>>>><br>>><br>><br>> -- <br>> Justin M Wozniak<br><br>-- <br>Justin M Wozniak<br><br> </div> </div> </div></body></html>