2010-03-12 16:46:34,667-0500 DEBUG Loader Max heap: 9223372036854775807 2010-03-12 16:46:34,668-0500 DEBUG Loader kmlversion is >85d134e6-973d-4045-a312-cf21ede3e279< 2010-03-12 16:46:34,668-0500 DEBUG Loader build version is >85d134e6-973d-4045-a312-cf21ede3e279< 2010-03-12 16:46:34,668-0500 DEBUG Loader Recompilation suppressed. 2010-03-12 16:46:35,036-0500 INFO VDL2ExecutionContext Stack dump: Level 1 [iA = 0, iB = 0, bA = false, bB = false] vdl:instanceconfig = Swift configuration [] vdl:operation = run swift.home = /home/mmaiensc/swift-svn/bin/.. PATH_SEPARATOR = / 2010-03-12 16:46:36,651-0500 INFO unknown Using sites file: sge.xml 2010-03-12 16:46:36,652-0500 INFO unknown Using tc.data: tc 2010-03-12 16:46:37,145-0500 INFO AbstractScheduler Setting resources to: {sge=sge} 2010-03-12 16:46:40,384-0500 INFO unknown Swift svn swift-r3255 (swift modified locally) cog-r2723 (cog modified locally) 2010-03-12 16:46:40,386-0500 INFO unknown RUNID id=tag:benc@ci.uchicago.edu,2007:swift:run:20100312-1646-8zx0vx6f 2010-03-12 16:46:40,557-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000001 type string value=/export3/chip-seq/analyses/mmc_analyses dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,576-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000001 2010-03-12 16:46:40,577-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000002 type string value=exptmapper.sh dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,577-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000002 2010-03-12 16:46:40,577-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000003 type string value=1pct.xls dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,577-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000003 2010-03-12 16:46:40,578-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000004 type string value=exptnamesmapper.sh dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,578-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000004 2010-03-12 16:46:40,579-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000005 type string value=exptgenesmapper.sh dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,579-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000005 2010-03-12 16:46:40,580-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000006 type int value=200.0 dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,580-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000006 2010-03-12 16:46:40,581-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000007 type int value=1.0 dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,581-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000007 2010-03-12 16:46:40,581-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000008 type int value=0.0 dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,582-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000008 2010-03-12 16:46:40,688-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000009 2010-03-12 16:46:40,698-0500 INFO AbstractDataNode Adding handle listener "expts.$[]/0" to "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000009 type string with no value at dataset=swift#mapper#17004 (not closed)" 2010-03-12 16:46:40,698-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000010 2010-03-12 16:46:40,704-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000011 2010-03-12 16:46:40,710-0500 INFO AbstractDataNode Adding handle listener "overlaps.$[]/0" to "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000011 type string with no value at dataset=swift#mapper#17006 (not closed)" 2010-03-12 16:46:40,710-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000012 2010-03-12 16:46:40,716-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000013 2010-03-12 16:46:40,722-0500 INFO AbstractDataNode Adding handle listener "genes.$[]/0" to "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000013 type string with no value at dataset=swift#mapper#17008 (not closed)" 2010-03-12 16:46:40,722-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000014 2010-03-12 16:46:40,752-0500 INFO AbstractDataNode Adding handle listener "Open, 0 elements, no listeners" to "org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000010 type file[] with no value at dataset=expts (not closed)" 2010-03-12 16:46:40,756-0500 INFO AbstractDataNode Adding handle listener "Open, 0 elements, no listeners" to "org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000012 type annotfile[] with no value at dataset=overlaps (not closed)" 2010-03-12 16:46:40,761-0500 INFO SetFieldValue Setting org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000009 type string with no value at dataset=swift#mapper#17004 (not closed) to exptmapper.sh 2010-03-12 16:46:40,761-0500 INFO AbstractDataNode Notifying listener "expts.$[]/0" about "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000009 type string value=exptmapper.sh dataset=swift#mapper#17004 (closed)" 2010-03-12 16:46:40,818-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.DataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000015 type file with no value at dataset=expts path=[0] (closed) 2010-03-12 16:46:40,818-0500 INFO AbstractDataNode Found data expts.$[]/1.[0] 2010-03-12 16:46:40,819-0500 INFO AbstractDataNode Notifying listener "Open, 0 elements, 1 listeners" about "org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000010 type file[] with no value at dataset=expts (closed)" 2010-03-12 16:46:40,819-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000010 type file[] with no value at dataset=expts (closed) 2010-03-12 16:46:40,819-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000009 type string value=exptmapper.sh dataset=swift#mapper#17004 (closed) 2010-03-12 16:46:40,820-0500 INFO SetFieldValue Setting org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000011 type string with no value at dataset=swift#mapper#17006 (not closed) to exptnamesmapper.sh 2010-03-12 16:46:40,821-0500 INFO AbstractDataNode Notifying listener "overlaps.$[]/0" about "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000011 type string value=exptnamesmapper.sh dataset=swift#mapper#17006 (closed)" 2010-03-12 16:46:40,873-0500 INFO AbstractDataNode Found mapped data overlaps.$[]/1.[0] 2010-03-12 16:46:40,873-0500 INFO AbstractDataNode Notifying listener "Open, 0 elements, 1 listeners" about "org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000012 type annotfile[] with no value at dataset=overlaps (closed)" 2010-03-12 16:46:40,874-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000012 type annotfile[] with no value at dataset=overlaps (closed) 2010-03-12 16:46:40,874-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000011 type string value=exptnamesmapper.sh dataset=swift#mapper#17006 (closed) 2010-03-12 16:46:40,875-0500 INFO SetFieldValue Setting org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000013 type string with no value at dataset=swift#mapper#17008 (not closed) to exptgenesmapper.sh 2010-03-12 16:46:40,875-0500 INFO AbstractDataNode Notifying listener "genes.$[]/0" about "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000013 type string value=exptgenesmapper.sh dataset=swift#mapper#17008 (closed)" 2010-03-12 16:46:40,933-0500 INFO AbstractDataNode Found mapped data genes.$[]/1.[0] 2010-03-12 16:46:40,933-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000014 type listfile[] with no value at dataset=genes (closed) 2010-03-12 16:46:40,934-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000013 type string value=exptgenesmapper.sh dataset=swift#mapper#17008 (closed) 2010-03-12 16:46:40,941-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000018 type int value=0.0 dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,941-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000018 2010-03-12 16:46:40,942-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000019 type int value=0.0 dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,942-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000019 2010-03-12 16:46:40,943-0500 INFO vdl:mains FOREACH_IT_START line=42 thread=0-3-1 2010-03-12 16:46:40,943-0500 INFO vdl:mains FOREACH_IT_START line=46 thread=0-4-1 2010-03-12 16:46:40,945-0500 INFO vdl:mains SCOPE thread=0-3-1 2010-03-12 16:46:40,945-0500 INFO vdl:mains SCOPE thread=0-4-1 2010-03-12 16:46:40,953-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000020 type string value=mmc-irf4-D3- dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:40,953-0500 INFO VDLFunction FUNCTIONPARAMETER id=451000 input=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000015 name=input 2010-03-12 16:46:40,954-0500 INFO VDLFunction FUNCTION id=451000 name=filename result=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000020 2010-03-12 16:46:40,978-0500 INFO compare_peaks STARTCOMPOUND thread=0-3-1-1 name=compare_peaks 2010-03-12 16:46:40,990-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000021 2010-03-12 16:46:40,995-0500 INFO genecount PROCEDURE line=22 thread=0-4-1-1 name=genecount 2010-03-12 16:46:41,011-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000022 2010-03-12 16:46:41,015-0500 INFO AbstractDataNode Adding handle listener "F/org.griphyn.vdl.mapping.DataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000016 type annotfile with no value at dataset=overlaps path=[0] (not closed)" to "org.griphyn.vdl.mapping.DataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000016 type annotfile with no value at dataset=overlaps path=[0] (not closed)" 2010-03-12 16:46:41,027-0500 INFO AbstractDataNode Adding handle listener "list.$[]/0" to "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000021 type string with no value at dataset=swift#mapper#17000 (not closed)" 2010-03-12 16:46:41,027-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000023 2010-03-12 16:46:41,045-0500 INFO SetFieldValue Setting org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000021 type string with no value at dataset=swift#mapper#17000 (not closed) to /export3/chip-seq/analyses/mmc_analyses 2010-03-12 16:46:41,045-0500 INFO AbstractDataNode Notifying listener "list.$[]/0" about "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000021 type string value=/export3/chip-seq/analyses/mmc_analyses dataset=swift#mapper#17000 (closed)" 2010-03-12 16:46:41,045-0500 INFO AbstractDataNode Adding handle listener "list.$[]/0" to "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000022 type string with no value at dataset=swift#mapper#17002 (not closed)" 2010-03-12 16:46:41,045-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000021 type string value=/export3/chip-seq/analyses/mmc_analyses dataset=swift#mapper#17000 (closed) 2010-03-12 16:46:41,046-0500 INFO SetFieldValue Setting org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000022 type string with no value at dataset=swift#mapper#17002 (not closed) to 1pct.xls 2010-03-12 16:46:41,046-0500 INFO AbstractDataNode Notifying listener "list.$[]/0" about "org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000022 type string value=1pct.xls dataset=swift#mapper#17002 (closed)" 2010-03-12 16:46:41,082-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.DataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000024 type listfile with no value at dataset=list path=[0] (closed) 2010-03-12 16:46:41,082-0500 INFO AbstractDataNode Found data list.$[]/1.[0] 2010-03-12 16:46:41,082-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.DataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000025 type listfile with no value at dataset=list path=[1] (closed) 2010-03-12 16:46:41,083-0500 INFO AbstractDataNode Found data list.$[]/2.[1] 2010-03-12 16:46:41,083-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootArrayDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000023 type listfile[] with no value at dataset=list (closed) 2010-03-12 16:46:41,083-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000022 type string value=1pct.xls dataset=swift#mapper#17002 (closed) 2010-03-12 16:46:41,097-0500 INFO comppeaks PROCEDURE line=18 thread=0-3-1-1-2 name=comppeaks 2010-03-12 16:46:41,132-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000026 type string value=export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-2_q1.1pct.xls export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-3_q1.1pct.xls dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:41,132-0500 INFO VDLFunction FUNCTIONPARAMETER id=451001 input=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000023 name=input 2010-03-12 16:46:41,132-0500 INFO VDLFunction FUNCTION id=451001 name=filename result=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000026 2010-03-12 16:46:41,134-0500 INFO AbstractDataNode closed org.griphyn.vdl.mapping.RootDataNode identifier tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000027 type string value=export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-overlap.xls dataset=unnamed SwiftScript value (closed) 2010-03-12 16:46:41,134-0500 INFO VDLFunction FUNCTIONPARAMETER id=451002 input=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000016 name=input 2010-03-12 16:46:41,134-0500 INFO VDLFunction FUNCTION id=451002 name=filename result=tag:benc@ci.uchicago.edu,2008:swift:dataset:20100312-1646-kf752iz5:720000000027 2010-03-12 16:46:41,169-0500 INFO vdl:execute START thread=0-3-1-1-2 tr=comppeaks 2010-03-12 16:46:41,213-0500 INFO WeightedHostScoreScheduler Sorted: [sge:10,000.000(99.854):0/63 overload: 0] 2010-03-12 16:46:41,214-0500 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=sge, score=99.854 2010-03-12 16:46:41,226-0500 INFO GlobalSubmitQueue No global submit throttle set. Using default (100) 2010-03-12 16:46:41,238-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401071) setting status to Submitting 2010-03-12 16:46:41,239-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401071) setting status to Submitted 2010-03-12 16:46:41,239-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401071) setting status to Active 2010-03-12 16:46:41,254-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401071) setting status to Completed 2010-03-12 16:46:41,254-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401071) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 6M, Max heap: 8796093022207M 2010-03-12 16:46:41,300-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401074) setting status to Submitting 2010-03-12 16:46:41,300-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401074) setting status to Submitted 2010-03-12 16:46:41,300-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401074) setting status to Active 2010-03-12 16:46:41,303-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401074) setting status to Completed 2010-03-12 16:46:41,303-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401074) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 5M, Max heap: 8796093022207M 2010-03-12 16:46:41,314-0500 INFO vdl:initshareddir START host=sge - Initializing shared directory 2010-03-12 16:46:41,320-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401076) setting status to Submitting 2010-03-12 16:46:41,321-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401076) setting status to Submitted 2010-03-12 16:46:41,321-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401076) setting status to Active 2010-03-12 16:46:41,327-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401076) setting status to Completed 2010-03-12 16:46:41,327-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401076) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 5M, Max heap: 8796093022207M 2010-03-12 16:46:41,342-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401079) setting status to Submitting 2010-03-12 16:46:41,342-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401079) setting status to Submitted 2010-03-12 16:46:41,342-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401079) setting status to Active 2010-03-12 16:46:41,345-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401079) setting status to Completed 2010-03-12 16:46:41,345-0500 INFO LateBindingScheduler Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401079) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 4M, Max heap: 8796093022207M 2010-03-12 16:46:41,348-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401082) setting status to Submitting 2010-03-12 16:46:41,348-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401082) setting status to Submitted 2010-03-12 16:46:41,349-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401082) setting status to Active 2010-03-12 16:46:41,351-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401082) setting status to Completed 2010-03-12 16:46:41,352-0500 INFO LateBindingScheduler Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401082) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 4M, Max heap: 8796093022207M 2010-03-12 16:46:41,356-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401085) setting status to Submitting 2010-03-12 16:46:41,356-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401085) setting status to Submitted 2010-03-12 16:46:41,356-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401085) setting status to Active 2010-03-12 16:46:41,359-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401085) setting status to Completed 2010-03-12 16:46:41,359-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401085) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 4M, Max heap: 8796093022207M 2010-03-12 16:46:41,368-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401087) setting status to Submitting 2010-03-12 16:46:41,368-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401087) setting status to Submitted 2010-03-12 16:46:41,368-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401087) setting status to Active 2010-03-12 16:46:41,371-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401087) setting status to Completed 2010-03-12 16:46:41,371-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401087) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 4M, Max heap: 8796093022207M 2010-03-12 16:46:41,380-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401089) setting status to Submitting 2010-03-12 16:46:41,380-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401089) setting status to Submitted 2010-03-12 16:46:41,380-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401089) setting status to Active 2010-03-12 16:46:41,383-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401089) setting status to Completed 2010-03-12 16:46:41,383-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401089) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 4M, Max heap: 8796093022207M 2010-03-12 16:46:41,388-0500 INFO vdl:initshareddir END host=sge - Done initializing shared directory 2010-03-12 16:46:41,398-0500 DEBUG vdl:execute2 THREAD_ASSOCIATION jobid=comppeaks-rkd2i0pj thread=0-3-1-1-2-1 host=sge replicationGroup=qkd2i0pj 2010-03-12 16:46:41,448-0500 INFO vdl:createdirset START jobid=comppeaks-rkd2i0pj host=sge - Initializing directory structure 2010-03-12 16:46:41,459-0500 INFO vdl:createdirs START path=export3/chip-seq/analyses/mmc_analyses dir=pipeline2-20100312-1646-8zx0vx6f/shared - Creating directory structure 2010-03-12 16:46:41,461-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401091) setting status to Submitting 2010-03-12 16:46:41,461-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401091) setting status to Submitted 2010-03-12 16:46:41,462-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401091) setting status to Active 2010-03-12 16:46:41,475-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401091) setting status to Completed 2010-03-12 16:46:41,475-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401091) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 2M, Max heap: 8796093022207M 2010-03-12 16:46:41,477-0500 INFO vdl:createdirset END jobid=comppeaks-rkd2i0pj - Done initializing directory structure 2010-03-12 16:46:41,481-0500 INFO vdl:dostagein START jobid=comppeaks-rkd2i0pj - Staging in files 2010-03-12 16:46:41,565-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1-1268430401093) setting status to Submitting 2010-03-12 16:46:41,566-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1-1268430401093) setting status to Submitted 2010-03-12 16:46:41,566-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1-1268430401093) setting status to Active 2010-03-12 16:46:41,566-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-2-1268430401095) setting status to Submitting 2010-03-12 16:46:41,566-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-2-1268430401095) setting status to Submitted 2010-03-12 16:46:41,566-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-2-1268430401095) setting status to Active 2010-03-12 16:46:41,567-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-2-1268430401095) setting status to Completed 2010-03-12 16:46:41,567-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-2-1268430401095) Completed. Waiting: 0, Running: 1. Heap size: 50M, Heap free: 16M, Max heap: 8796093022207M 2010-03-12 16:46:41,571-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1-1268430401093) setting status to Completed 2010-03-12 16:46:41,571-0500 INFO LateBindingScheduler Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1-1268430401093) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 16M, Max heap: 8796093022207M 2010-03-12 16:46:41,580-0500 DEBUG vdl:dostagein FILE_STAGE_IN_START file=file://localhost//export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-2_q1.1pct.xls srchost=localhost srcdir=/export3/chip-seq/analyses/mmc_analyses srcname=mmc-irf4-D3-2_q1.1pct.xls desthost=sge destdir=pipeline2-20100312-1646-8zx0vx6f/shared/export3/chip-seq/analyses/mmc_analyses provider=file 2010-03-12 16:46:41,582-0500 DEBUG vdl:dostagein FILE_STAGE_IN_START file=file://localhost//export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-3_q1.1pct.xls srchost=localhost srcdir=/export3/chip-seq/analyses/mmc_analyses srcname=mmc-irf4-D3-3_q1.1pct.xls desthost=sge destdir=pipeline2-20100312-1646-8zx0vx6f/shared/export3/chip-seq/analyses/mmc_analyses provider=file 2010-03-12 16:46:41,587-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-2-1268430401098) setting status to Submitting 2010-03-12 16:46:41,587-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-2-1268430401098) setting status to Submitted 2010-03-12 16:46:41,587-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-2-1268430401098) setting status to Active 2010-03-12 16:46:41,587-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1-1268430401100) setting status to Submitting 2010-03-12 16:46:41,588-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1-1268430401100) setting status to Submitted 2010-03-12 16:46:41,588-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1-1268430401100) setting status to Active 2010-03-12 16:46:41,648-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-2-1268430401098) setting status to Completed 2010-03-12 16:46:41,649-0500 INFO LateBindingScheduler Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-2-1268430401098) Completed. Waiting: 0, Running: 1. Heap size: 50M, Heap free: 16M, Max heap: 8796093022207M 2010-03-12 16:46:41,652-0500 DEBUG vdl:dostagein FILE_STAGE_IN_END file=file://localhost//export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-2_q1.1pct.xls srchost=localhost srcdir=/export3/chip-seq/analyses/mmc_analyses srcname=mmc-irf4-D3-2_q1.1pct.xls desthost=sge destdir=pipeline2-20100312-1646-8zx0vx6f/shared/export3/chip-seq/analyses/mmc_analyses provider=file 2010-03-12 16:46:41,692-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1-1268430401100) setting status to Completed 2010-03-12 16:46:41,693-0500 INFO LateBindingScheduler Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1-1268430401100) Completed. Waiting: 0, Running: 0. Heap size: 50M, Heap free: 16M, Max heap: 8796093022207M 2010-03-12 16:46:41,694-0500 DEBUG vdl:dostagein FILE_STAGE_IN_END file=file://localhost//export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-3_q1.1pct.xls srchost=localhost srcdir=/export3/chip-seq/analyses/mmc_analyses srcname=mmc-irf4-D3-3_q1.1pct.xls desthost=sge destdir=pipeline2-20100312-1646-8zx0vx6f/shared/export3/chip-seq/analyses/mmc_analyses provider=file 2010-03-12 16:46:41,696-0500 INFO vdl:dostagein END jobid=comppeaks-rkd2i0pj - Staging in finished 2010-03-12 16:46:41,702-0500 DEBUG vdl:execute2 JOB_START jobid=comppeaks-rkd2i0pj tr=comppeaks arguments=[export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-2_q1.1pct.xls export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-3_q1.1pct.xls, 200, export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-overlap.xls] tmpdir=pipeline2-20100312-1646-8zx0vx6f/jobs/r/comppeaks-rkd2i0pj host=sge 2010-03-12 16:46:41,781-0500 INFO Execute jobid=comppeaks-rkd2i0pj task=Task(type=JOB_SUBMISSION, identity=urn:0-3-1-1-2-1-1268430401104) 2010-03-12 16:46:41,788-0500 DEBUG TaskImpl Task(type=JOB_SUBMISSION, identity=urn:0-3-1-1-2-1-1268430401104) setting status to Submitting 2010-03-12 16:46:41,837-0500 INFO LocalService Started local service: 128.135.10.25:43207 2010-03-12 16:46:41,849-0500 DEBUG TaskImpl Task(type=JOB_SUBMISSION, identity=urn:0-3-1-1-2-1-1268430401104) setting status to Submitted 2010-03-12 16:46:41,849-0500 DEBUG TaskImpl Task(type=JOB_SUBMISSION, identity=urn:0-3-1-1-2-1-1268430401104) setting status to Active 2010-03-12 16:46:41,850-0500 DEBUG TaskImpl Task(type=JOB_SUBMISSION, identity=urn:0-3-1-1-2-1-1268430401104) setting status to Failed Could not submit job 2010-03-12 16:46:42,002-0500 DEBUG vdl:execute2 APPLICATION_EXCEPTION jobid=comppeaks-rkd2i0pj - Application exception: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not start coaster service Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: java.lang.IllegalArgumentException: Address type not supported Caused by: java.lang.IllegalArgumentException: Address type not supported at java.net.ServerSocket.bind(libgcj.so.70) at java.net.ServerSocket.bind(libgcj.so.70) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.bind(PortManager.java:64) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.openServerSocketChannel(PortManager.java:37) at org.globus.cog.abstraction.impl.execution.coaster.BootstrapService.start(BootstrapService.java:137) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startBootstrapService(ServiceManager.java:364) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.getBootstrapServiceURL(ServiceManager.java:353) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:270) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startService(ServiceManager.java:160) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:120) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:134) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.getChannel(JobSubmissionTaskHandler.java:109) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:95) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86) at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431) at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668) at java.lang.Thread.run(libgcj.so.70) 2010-03-12 16:46:42,027-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401107) setting status to Submitting 2010-03-12 16:46:42,027-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401107) setting status to Submitted 2010-03-12 16:46:42,028-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401107) setting status to Active 2010-03-12 16:46:42,035-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401107) setting status to Failed File not found: /export3/chip-seq/programs/swift/pipeline2-20100312-1646-8zx0vx6f/jobs/r/comppeaks-rkd2i0pj/stderr.txt 2010-03-12 16:46:42,042-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401110) setting status to Submitting 2010-03-12 16:46:42,043-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401110) setting status to Submitted 2010-03-12 16:46:42,043-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401110) setting status to Active 2010-03-12 16:46:42,065-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401110) setting status to Failed org.globus.cog.abstraction.impl.file.FileNotFoundException: comppeaks-rkd2i0pj-stderr.txt not found. 2010-03-12 16:46:42,070-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401112) setting status to Submitting 2010-03-12 16:46:42,070-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401112) setting status to Submitted 2010-03-12 16:46:42,071-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401112) setting status to Active 2010-03-12 16:46:42,072-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401112) setting status to Failed File not found: /export3/chip-seq/programs/swift/pipeline2-20100312-1646-8zx0vx6f/jobs/r/comppeaks-rkd2i0pj/stdout.txt 2010-03-12 16:46:42,075-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401115) setting status to Submitting 2010-03-12 16:46:42,075-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401115) setting status to Submitted 2010-03-12 16:46:42,076-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401115) setting status to Active 2010-03-12 16:46:42,077-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401115) setting status to Failed org.globus.cog.abstraction.impl.file.FileNotFoundException: comppeaks-rkd2i0pj-stdout.txt not found. 2010-03-12 16:46:42,091-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401117) setting status to Submitting 2010-03-12 16:46:42,091-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401117) setting status to Submitted 2010-03-12 16:46:42,092-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401117) setting status to Active 2010-03-12 16:46:42,093-0500 DEBUG TaskImpl Task(type=FILE_TRANSFER, identity=urn:0-3-1-1-2-1-1268430401117) setting status to Failed File not found: /export3/chip-seq/programs/swift/pipeline2-20100312-1646-8zx0vx6f/info/r/comppeaks-rkd2i0pj-info 2010-03-12 16:46:42,098-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401120) setting status to Submitting 2010-03-12 16:46:42,098-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401120) setting status to Submitted 2010-03-12 16:46:42,098-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401120) setting status to Active 2010-03-12 16:46:42,099-0500 DEBUG TaskImpl Task(type=FILE_OPERATION, identity=urn:0-3-1-1-2-1-1268430401120) setting status to Failed org.globus.cog.abstraction.impl.file.FileNotFoundException: comppeaks-rkd2i0pj-info not found. 2010-03-12 16:46:42,102-0500 WARN vdl:transferwrapperlog Failed to transfer wrapper log from pipeline2-20100312-1646-8zx0vx6f/info/r on sge 2010-03-12 16:46:42,105-0500 DEBUG vdl:transferwrapperlog Exception for wrapper log failure from pipeline2-20100312-1646-8zx0vx6f/info/r on sge: File not found: /export3/chip-seq/programs/swift/pipeline2-20100312-1646-8zx0vx6f/info/r/comppeaks-rkd2i0pj-info Caused by: org.globus.cog.abstraction.impl.file.FileNotFoundException: File not found: /export3/chip-seq/programs/swift/pipeline2-20100312-1646-8zx0vx6f/info/r/comppeaks-rkd2i0pj-info 2010-03-12 16:46:42,130-0500 INFO vdl:execute END_FAILURE thread=0-3-1-1-2 tr=comppeaks 2010-03-12 16:46:42,147-0500 DEBUG VDL2ExecutionContext Exception in comppeaks: Arguments: [export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-2_q1.1pct.xls export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-3_q1.1pct.xls, 200, export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-overlap.xls] Host: sge Directory: pipeline2-20100312-1646-8zx0vx6f/jobs/r/comppeaks-rkd2i0pj stderr.txt: stdout.txt: ---- Exception in comppeaks: Arguments: [export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-2_q1.1pct.xls export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-3_q1.1pct.xls, 200, export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-overlap.xls] Host: sge Directory: pipeline2-20100312-1646-8zx0vx6f/jobs/r/comppeaks-rkd2i0pj stderr.txt: stdout.txt: ---- Caused by: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not start coaster service Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: java.lang.IllegalArgumentException: Address type not supported Caused by: java.lang.IllegalArgumentException: Address type not supported at java.net.ServerSocket.bind(libgcj.so.70) at java.net.ServerSocket.bind(libgcj.so.70) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.bind(PortManager.java:64) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.openServerSocketChannel(PortManager.java:37) at org.globus.cog.abstraction.impl.execution.coaster.BootstrapService.start(BootstrapService.java:137) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startBootstrapService(ServiceManager.java:364) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.getBootstrapServiceURL(ServiceManager.java:353) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:270) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startService(ServiceManager.java:160) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:120) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:134) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.getChannel(JobSubmissionTaskHandler.java:109) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:95) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86) at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431) at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668) at java.lang.Thread.run(libgcj.so.70) at org.globus.cog.karajan.workflow.nodes.functions.KException.function(KException.java:29) at org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:27) at org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192) at org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:134) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:108) at org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:176) at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298) at org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58) at org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:28) at org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:51) at org.globus.cog.karajan.workflow.nodes.Sequential.executeChildren(Sequential.java:27) at org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63) at org.globus.cog.karajan.workflow.nodes.FlowNode.restart(FlowNode.java:233) at org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:280) at org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:393) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:331) at org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:229) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:134) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:108) at org.globus.cog.karajan.workflow.events.EventTargetPair.run(EventTargetPair.java:43) at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431) at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668) at java.lang.Thread.run(libgcj.so.70) Caused by: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not start coaster service Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: java.lang.IllegalArgumentException: Address type not supported Caused by: java.lang.IllegalArgumentException: Address type not supported at java.net.ServerSocket.bind(libgcj.so.70) at java.net.ServerSocket.bind(libgcj.so.70) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.bind(PortManager.java:64) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.openServerSocketChannel(PortManager.java:37) at org.globus.cog.abstraction.impl.execution.coaster.BootstrapService.start(BootstrapService.java:137) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startBootstrapService(ServiceManager.java:364) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.getBootstrapServiceURL(ServiceManager.java:353) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:270) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startService(ServiceManager.java:160) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:120) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:134) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.getChannel(JobSubmissionTaskHandler.java:109) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:95) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86) at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431) at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668) at java.lang.Thread.run(libgcj.so.70) at org.globus.cog.karajan.workflow.events.FailureNotificationEvent.(FailureNotificationEvent.java:36) at org.globus.cog.karajan.workflow.events.FailureNotificationEvent.(FailureNotificationEvent.java:42) at org.globus.cog.karajan.workflow.nodes.FlowNode.failImmediately(FlowNode.java:151) at org.globus.cog.karajan.workflow.nodes.grid.GridExec.taskFailed(GridExec.java:317) at org.globus.cog.karajan.workflow.nodes.grid.AbstractGridNode.statusChanged(AbstractGridNode.java:276) at org.griphyn.vdl.karajan.lib.Execute.statusChanged(Execute.java:104) at org.globus.cog.karajan.scheduler.AbstractScheduler.fireJobStatusChangeEvent(AbstractScheduler.java:168) at org.globus.cog.karajan.scheduler.LateBindingScheduler.statusChanged(LateBindingScheduler.java:661) at org.globus.cog.karajan.scheduler.WeightedHostScoreScheduler.statusChanged(WeightedHostScoreScheduler.java:424) at org.griphyn.vdl.karajan.VDSAdaptiveScheduler.statusChanged(VDSAdaptiveScheduler.java:410) at org.globus.cog.abstraction.impl.common.task.TaskImpl.notifyListeners(TaskImpl.java:236) at org.globus.cog.abstraction.impl.common.task.TaskImpl.setStatus(TaskImpl.java:224) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:77) at org.globus.cog.karajan.scheduler.submitQueue.AbstractSubmitQueue.submitCompleted(AbstractSubmitQueue.java:35) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.AbstractSubmitQueue.submitCompleted(AbstractSubmitQueue.java:35) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.AbstractSubmitQueue.submitCompleted(AbstractSubmitQueue.java:35) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.NullQueue.submitCompleted(NullQueue.java:18) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:90) ...5 more Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:100) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86) ...5 more Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not start coaster service at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:128) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:134) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.getChannel(JobSubmissionTaskHandler.java:109) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:95) ...7 more Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: java.lang.IllegalArgumentException: Address type not supported at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:284) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startService(ServiceManager.java:160) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:120) ...10 more Caused by: java.lang.IllegalArgumentException: Address type not supported at java.net.ServerSocket.bind(libgcj.so.70) at java.net.ServerSocket.bind(libgcj.so.70) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.bind(PortManager.java:64) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.openServerSocketChannel(PortManager.java:37) at org.globus.cog.abstraction.impl.execution.coaster.BootstrapService.start(BootstrapService.java:137) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startBootstrapService(ServiceManager.java:364) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.getBootstrapServiceURL(ServiceManager.java:353) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:270) ...12 more 2010-03-12 16:46:43,503-0500 INFO ExecutionContext Detailed exception: Exception in comppeaks: Arguments: [export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-2_q1.1pct.xls export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-3_q1.1pct.xls, 200, export3/chip-seq/analyses/mmc_analyses/mmc-irf4-D3-overlap.xls] Host: sge Directory: pipeline2-20100312-1646-8zx0vx6f/jobs/r/comppeaks-rkd2i0pj stderr.txt: stdout.txt: ---- Caused by: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not start coaster service Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: java.lang.IllegalArgumentException: Address type not supported Caused by: java.lang.IllegalArgumentException: Address type not supported at java.net.ServerSocket.bind(libgcj.so.70) at java.net.ServerSocket.bind(libgcj.so.70) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.bind(PortManager.java:64) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.openServerSocketChannel(PortManager.java:37) at org.globus.cog.abstraction.impl.execution.coaster.BootstrapService.start(BootstrapService.java:137) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startBootstrapService(ServiceManager.java:364) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.getBootstrapServiceURL(ServiceManager.java:353) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:270) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startService(ServiceManager.java:160) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:120) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:134) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.getChannel(JobSubmissionTaskHandler.java:109) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:95) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86) at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431) at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668) at java.lang.Thread.run(libgcj.so.70) at org.globus.cog.karajan.workflow.nodes.functions.KException.function(KException.java:29) at org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:27) at org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192) at org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:134) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:108) at org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:176) at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298) at org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58) at org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:28) at org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:51) at org.globus.cog.karajan.workflow.nodes.Sequential.executeChildren(Sequential.java:27) at org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63) at org.globus.cog.karajan.workflow.nodes.FlowNode.restart(FlowNode.java:233) at org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:280) at org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:393) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:331) at org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:229) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:134) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:108) at org.globus.cog.karajan.workflow.events.EventTargetPair.run(EventTargetPair.java:43) at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431) at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668) at java.lang.Thread.run(libgcj.so.70) Caused by: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not start coaster service Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: java.lang.IllegalArgumentException: Address type not supported Caused by: java.lang.IllegalArgumentException: Address type not supported at java.net.ServerSocket.bind(libgcj.so.70) at java.net.ServerSocket.bind(libgcj.so.70) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.bind(PortManager.java:64) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.openServerSocketChannel(PortManager.java:37) at org.globus.cog.abstraction.impl.execution.coaster.BootstrapService.start(BootstrapService.java:137) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startBootstrapService(ServiceManager.java:364) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.getBootstrapServiceURL(ServiceManager.java:353) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:270) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startService(ServiceManager.java:160) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:120) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:134) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.getChannel(JobSubmissionTaskHandler.java:109) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:95) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86) at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431) at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643) at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668) at java.lang.Thread.run(libgcj.so.70) at org.globus.cog.karajan.workflow.events.FailureNotificationEvent.(FailureNotificationEvent.java:36) at org.globus.cog.karajan.workflow.events.FailureNotificationEvent.(FailureNotificationEvent.java:42) at org.globus.cog.karajan.workflow.nodes.FlowNode.failImmediately(FlowNode.java:151) at org.globus.cog.karajan.workflow.nodes.grid.GridExec.taskFailed(GridExec.java:317) at org.globus.cog.karajan.workflow.nodes.grid.AbstractGridNode.statusChanged(AbstractGridNode.java:276) at org.griphyn.vdl.karajan.lib.Execute.statusChanged(Execute.java:104) at org.globus.cog.karajan.scheduler.AbstractScheduler.fireJobStatusChangeEvent(AbstractScheduler.java:168) at org.globus.cog.karajan.scheduler.LateBindingScheduler.statusChanged(LateBindingScheduler.java:661) at org.globus.cog.karajan.scheduler.WeightedHostScoreScheduler.statusChanged(WeightedHostScoreScheduler.java:424) at org.griphyn.vdl.karajan.VDSAdaptiveScheduler.statusChanged(VDSAdaptiveScheduler.java:410) at org.globus.cog.abstraction.impl.common.task.TaskImpl.notifyListeners(TaskImpl.java:236) at org.globus.cog.abstraction.impl.common.task.TaskImpl.setStatus(TaskImpl.java:224) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:77) at org.globus.cog.karajan.scheduler.submitQueue.AbstractSubmitQueue.submitCompleted(AbstractSubmitQueue.java:35) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.AbstractSubmitQueue.submitCompleted(AbstractSubmitQueue.java:35) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.AbstractSubmitQueue.submitCompleted(AbstractSubmitQueue.java:35) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.NullQueue.submitCompleted(NullQueue.java:18) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.notifyPreviousQueue(NonBlockingSubmit.java:61) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:90) ...5 more Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:100) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46) at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86) ...5 more Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not start coaster service at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:128) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:134) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.getChannel(JobSubmissionTaskHandler.java:109) at org.globus.cog.abstraction.impl.execution.coaster.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:95) ...7 more Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: java.lang.IllegalArgumentException: Address type not supported at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:284) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startService(ServiceManager.java:160) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.reserveService(ServiceManager.java:120) ...10 more Caused by: java.lang.IllegalArgumentException: Address type not supported at java.net.ServerSocket.bind(libgcj.so.70) at java.net.ServerSocket.bind(libgcj.so.70) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.bind(PortManager.java:64) at org.globus.cog.abstraction.impl.execution.coaster.PortManager.openServerSocketChannel(PortManager.java:37) at org.globus.cog.abstraction.impl.execution.coaster.BootstrapService.start(BootstrapService.java:137) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.startBootstrapService(ServiceManager.java:364) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.getBootstrapServiceURL(ServiceManager.java:353) at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager.buildTask(ServiceManager.java:270) ...12 more 2010-03-12 16:46:43,505-0500 DEBUG Loader Swift finished with errors