<HTML dir=ltr><HEAD>
<META http-equiv=Content-Type content="text/html; charset=unicode">
<META content="MSHTML 6.00.6000.16825" name=GENERATOR></HEAD>
<BODY>
<DIV><FONT face=Arial color=#000000 size=2>Hi,</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>I'm using Swift and PTMap to analyze E coli genome data. Right now, I'm only mapped on SDSC DTF and NCSA mercury, so I'm trying to use only these two computer clusters. Total number of jobs should be around 4127. After it started, the application runs normally. However, after 3769 jobs returned successfully, it could not receive any more data and the system kept waiting. On these computers, if I use qstat, I cannot find any active job. In my email, I received 45 emails like the following:</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>/////</FONT></DIV>
<DIV><FONT size=2>PBS Job Id: 1932326.tg-master.ncsa.teragrid.org<BR>Job Name: null<BR>job deleted<BR>Job deleted at request of root@tg-master.ncsa.teragrid.org<BR>MOAB_INFO: job exceeded wallclock limit</FONT><BR>//////</DIV>
<DIV> </DIV>
<DIV>I'm wondering if I did something wrong and how I can avoid this situation. The log of the search should be /home/yuechen/PTMap2/<FONT face=Arial color=#000000 size=2>PTMap2-unmod-20090418-1254-d8loarc1.log.</FONT></DIV>
<P><FONT face=Arial color=#000000 size=2>/************* The swift script I used is /home/yuechen/PTMap2/PTMap2-unmod.swift</FONT></P>
<P><FONT face=Arial color=#000000 size=2>/************* tc.data is /home/yuechen/PTMap2/tc.data</FONT></P>
<P><FONT face=Arial color=#000000 size=2>/************* sites.xml is /home/yuechen/PTMap2/sites.xml and the following are the two sites I used.</FONT></P>
<P><FONT face=Arial color=#000000 size=2> <pool handle="SDSC_dtf_prews_pbs"><BR> <gridftp url="gsiftp://tg-gridftp.sdsc.teragrid.org:2811/" /><BR> <jobmanager universe="vanilla" url="tg-login1.sdsc.teragrid.org:2119/jobmanager-pbs" major="2" /><BR> <workdirectory >/gpfs-wan/scratch/yuechen</workdirectory><BR> <profile namespace="globus" key="queue">fast</profile><BR> </pool><BR><pool handle="NCSAMERCURY"><BR> <gridftp url="gsiftp://gridftp-hg.ncsa.teragrid.org"/><BR> <execution provider="coaster" url="grid-hg.ncsa.teragrid.org" jobManager="gt2:PBS"/><BR> <workdirectory>/gpfs_scratch1/yuechen/swiftwork</workdirectory><BR> </pool><BR></FONT><FONT face=Arial color=#000000 size=2></FONT></P>
<P><FONT face=Arial color=#000000 size=2>Thank you very much!</FONT></P>
<P><FONT face=Arial color=#000000 size=2>Best regards,</FONT></P>
<P><FONT face=Arial color=#000000 size=2>Chen, Yue</P>
<DIV><BR></DIV></FONT><DIV> </DIV><br><br>This email is intended only for the use of the individual or entity to which it is addressed and may contain information that is privileged and confidential. If the reader of this email message is not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this communication is prohibited. If you have received this email in error, please notify the sender and destroy/delete all copies of the transmittal. Thank you.<br></BODY></HTML>