2008-07-14 14:05:13,699-0500 INFO Loader grid-many-dock6-string.swift: source file is new. Recompiling. 2008-07-14 14:05:14,610-0500 INFO Karajan Validation of XML intermediate file was successful 2008-07-14 14:05:14,618-0500 INFO VariableScope New scope 19157736 with no parent. 2008-07-14 14:05:14,625-0500 INFO VariableScope New scope 13228332 with no parent. 2008-07-14 14:05:14,625-0500 INFO VariableScope New scope 30472956 with no parent. 2008-07-14 14:05:14,633-0500 INFO VariableScope Adding variable t to scope 30472956 2008-07-14 14:05:14,633-0500 INFO VariableScope Adding variable ligandsfile to scope 13228332 2008-07-14 14:05:14,634-0500 INFO VariableScope Adding variable targetlist to scope 13228332 2008-07-14 14:05:14,684-0500 INFO VariableScope New scope 2165595 with no parent. 2008-07-14 14:05:14,685-0500 INFO VariableScope New scope 24152206 with no parent. 2008-07-14 14:05:14,685-0500 INFO VariableScope Adding variable pset to scope 2165595 2008-07-14 14:05:14,693-0500 INFO VariableScope New scope 10519800 with no parent. 2008-07-14 14:05:14,693-0500 INFO VariableScope Adding variable params to scope 10519800 2008-07-14 14:05:14,693-0500 INFO VariableScope Adding variable i to scope 10519800 2008-07-14 14:05:14,711-0500 INFO VariableScope Adding variable sout to scope 10519800 2008-07-14 14:05:14,716-0500 INFO VariableScope thats the declaration for sout 2008-07-14 14:05:14,722-0500 INFO VariableScope Adding variable p to scope 19157736 2008-07-14 14:05:14,722-0500 INFO VariableScope thats the declaration for p 2008-07-14 14:05:15,608-0500 INFO unknown Using sites file: /home/houzx/vdsk-0.4/etc/sites.xml 2008-07-14 14:05:15,609-0500 INFO unknown Using tc.data: /home/houzx/vdsk-0.4/etc/tc.data 2008-07-14 14:05:16,334-0500 INFO unknown Swift v0.4 swift-r1718 cog-r1934 2008-07-14 14:05:16,335-0500 INFO unknown RUNID id=tag:benc@ci.uchicago.edu,2007:swift:run:20080714-1405-letz6tcb 2008-07-14 14:05:16,395-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20080714-1405-254ulnxf:720000000001 2008-07-14 14:06:21,245-0500 INFO AbstractDataNode closed tag:benc@ci.uchicago.edu,2008:swift:dataset:20080714-1405-254ulnxf:720000000002 2008-07-14 14:06:21,246-0500 INFO doall 2008-07-14 14:06:21,248-0500 INFO AbstractDataNode ROOTPATH dataset=tag:benc@ci.uchicago.edu,2008:swift:dataset:20080714-1405-254ulnxf:720000000002 path=$ 2008-07-14 14:06:21,248-0500 INFO AbstractDataNode VALUE dataset=tag:benc@ci.uchicago.edu,2008:swift:dataset:20080714-1405-254ulnxf:720000000002 VALUE=paramslist.txt 2008-07-14 14:06:21,262-0500 INFO AbstractDataNode Adding handle listener "Open, 0 elements, no listeners" to "p.$[]/0" 2008-07-14 14:06:21,263-0500 INFO New NEW id=tag:benc@ci.uchicago.edu,2008:swift:dataset:20080714-1405-254ulnxf:720000000002 2008-07-14 14:06:21,272-0500 DEBUG VDL2ExecutionContext File header does not match type. Expected the following header items (in no particular order): [ligandsfile, targetlist]. Instead, the header was (again, in no particular order): [ligandsfile,targetlist] File header does not match type. Expected the following header items (in no particular order): [ligandsfile, targetlist]. Instead, the header was (again, in no particular order): [ligandsfile,targetlist] swiftscript:readdata @ grid-many-dock6-string.kml, line: 140 sys:sequential @ grid-many-dock6-string.kml, line: 139 sys:parallel @ grid-many-dock6-string.kml, line: 138 vdl:mainp @ grid-many-dock6-string.kml, line: 137 mainp @ vdl.k, line: 150 vdl:mains @ grid-many-dock6-string.kml, line: 135 vdl:mains @ grid-many-dock6-string.kml, line: 135 rlog:restartlog @ grid-many-dock6-string.kml, line: 133 kernel:project @ grid-many-dock6-string.kml, line: 2 grid-many-dock6-string-20080714-1405-letz6tcb at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readStructHeader(ReadData.java:165) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readStructArray(ReadData.java:134) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readArray(ReadData.java:111) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readData(ReadData.java:69) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.function(ReadData.java:44) at org.griphyn.vdl.karajan.lib.VDLFunction.post(VDLFunction.java:65) at org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192) at org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:335) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99) at org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:173) at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:299) at org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58) at org.globus.cog.karajan.workflow.nodes.Parallel.notificationEvent(Parallel.java:90) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:335) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99) at org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:173) at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:299) at org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58) at org.griphyn.vdl.karajan.lib.VDLFunction.post(VDLFunction.java:69) at org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:51) at org.globus.cog.karajan.workflow.nodes.Sequential.executeChildren(Sequential.java:27) at org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63) at org.globus.cog.karajan.workflow.nodes.FlowNode.restart(FlowNode.java:240) at org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:281) at org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:393) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:332) at org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:227) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99) at org.globus.cog.karajan.workflow.events.EventWorker.run(EventWorker.java:69) 2008-07-14 14:06:21,283-0500 INFO ExecutionContext Detailed exception: File header does not match type. Expected the following header items (in no particular order): [ligandsfile, targetlist]. Instead, the header was (again, in no particular order): [ligandsfile,targetlist] swiftscript:readdata @ grid-many-dock6-string.kml, line: 140 sys:sequential @ grid-many-dock6-string.kml, line: 139 sys:parallel @ grid-many-dock6-string.kml, line: 138 vdl:mainp @ grid-many-dock6-string.kml, line: 137 mainp @ vdl.k, line: 150 vdl:mains @ grid-many-dock6-string.kml, line: 135 vdl:mains @ grid-many-dock6-string.kml, line: 135 rlog:restartlog @ grid-many-dock6-string.kml, line: 133 kernel:project @ grid-many-dock6-string.kml, line: 2 grid-many-dock6-string-20080714-1405-letz6tcb at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readStructHeader(ReadData.java:165) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readStructArray(ReadData.java:134) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readArray(ReadData.java:111) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.readData(ReadData.java:69) at org.griphyn.vdl.karajan.lib.swiftscript.ReadData.function(ReadData.java:44) at org.griphyn.vdl.karajan.lib.VDLFunction.post(VDLFunction.java:65) at org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192) at org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:335) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99) at org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:173) at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:299) at org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58) at org.globus.cog.karajan.workflow.nodes.Parallel.notificationEvent(Parallel.java:90) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:335) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99) at org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:173) at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:299) at org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58) at org.griphyn.vdl.karajan.lib.VDLFunction.post(VDLFunction.java:69) at org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:51) at org.globus.cog.karajan.workflow.nodes.Sequential.executeChildren(Sequential.java:27) at org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63) at org.globus.cog.karajan.workflow.nodes.FlowNode.restart(FlowNode.java:240) at org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:281) at org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:393) at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:332) at org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:227) at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125) at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99) at org.globus.cog.karajan.workflow.events.EventWorker.run(EventWorker.java:69) 2008-07-14 14:06:21,284-0500 DEBUG Loader Swift finished with errors