Listening for transport dt_socket at address: 8787
Recompilation suppressed.
Using sites file: sites-purdue_condor.xml
Using tc.data: tc-purdue.data
Unable to find required classes (javax.activation.DataHandler and javax.mail.internet.MimeMultipart). Attachment support is disabled.
Swift v0.3-dev r1379 (modified locally)

Swift v0.3-dev r1379 (modified locally)

RunID: 20071106-1523-zozhrurg
RunID: 20071106-1523-zozhrurg
pre_ch started
START thread=0-0 tr=pre_ch
START host=Purdue - Initializing shared directory
Waiting for org.griphyn.vdl.mapping.DataNode with no value at dataset=outfiles path=[3]
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=wf
Waiting for org.griphyn.vdl.mapping.DataNode with no value at dataset=am1_files path=[0]
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_disp
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0_0DOT2DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT2_0DOT3DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT8_0DOT9DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_chg
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT4_0DOT5DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT6_0DOT7DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT3_0DOT4DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT9_1DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT5_0DOT6DOTwham
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=solv_repu_0DOT7_0DOT8DOTwham
Waiting for org.griphyn.vdl.mapping.DataNode with no value at dataset=whamfiles path=[63]
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Waiting for org.griphyn.vdl.mapping.RootDataNode with no value at dataset=rtf_file
Task(type=FILE_OPERATION, identity=urn:0-0-1194384238735) setting status to Failed Error communicating with the GridFTP server
START host=Purdue - Initializing shared directory
Task(type=FILE_OPERATION, identity=urn:0-0-1194384239015) setting status to Failed Error communicating with the GridFTP server
START host=Purdue - Initializing shared directory
Task(type=FILE_OPERATION, identity=urn:0-0-1194384239019) setting status to Failed Error communicating with the GridFTP server
pre_ch failed
END_FAILURE thread=0-0 tr=pre_ch
Could not initialize shared directory on Purdue
Could not initialize shared directory on Purdue
	sys:exception @ vdl-int.k, line: 343
	sys:throw @ vdl-int.k, line: 343
	sys:try @ vdl-int.k, line: 342
	sys:set @ vdl-int.k, line: 341
	task:allocatehost @ vdl-int.k, line: 339
	vdl:execute2 @ execute-default.k, line: 23
	sys:restartonerror @ execute-default.k, line: 21
	sys:sequential @ execute-default.k, line: 19
	sys:try @ execute-default.k, line: 18
	sys:if @ execute-default.k, line: 17
	sys:then @ execute-default.k, line: 16
	sys:if @ execute-default.k, line: 15
	vdl:execute @ MolDyn-1-loops.kml, line: 323
	pre_antchmbr @ MolDyn-1-loops.kml, line: 540
	sys:parallel @ MolDyn-1-loops.kml, line: 539
	vdl:mainp @ MolDyn-1-loops.kml, line: 538
	mainp @ vdl.k, line: 148
	vdl:mains @ MolDyn-1-loops.kml, line: 537
	vdl:mains @ MolDyn-1-loops.kml, line: 537
	rlog:restartlog @ MolDyn-1-loops.kml, line: 535
	kernel:project @ MolDyn-1-loops.kml, line: 2
	MolDyn-1-loops-20071106-1523-zozhrurg
Caused by: Error communicating with the GridFTP server
	task:dir:make @ vdl-int.k, line: 108
	sys:once @ vdl-int.k, line: 103
	vdl:initshareddir @ vdl-int.k, line: 342
	sys:try @ vdl-int.k, line: 342
	sys:set @ vdl-int.k, line: 341
	task:allocatehost @ vdl-int.k, line: 339
	vdl:execute2 @ execute-default.k, line: 23
	sys:restartonerror @ execute-default.k, line: 21
	sys:sequential @ execute-default.k, line: 19
	sys:try @ execute-default.k, line: 18
	sys:if @ execute-default.k, line: 17
	sys:then @ execute-default.k, line: 16
	sys:if @ execute-default.k, line: 15
	vdl:execute @ MolDyn-1-loops.kml, line: 323
	pre_antchmbr @ MolDyn-1-loops.kml, line: 540
	sys:parallel @ MolDyn-1-loops.kml, line: 539
	vdl:mainp @ MolDyn-1-loops.kml, line: 538
	mainp @ vdl.k, line: 148
	vdl:mains @ MolDyn-1-loops.kml, line: 537
	vdl:mains @ MolDyn-1-loops.kml, line: 537
	rlog:restartlog @ MolDyn-1-loops.kml, line: 535
	kernel:project @ MolDyn-1-loops.kml, line: 2
	MolDyn-1-loops-20071106-1523-zozhrurg
Caused by: org.globus.cog.abstraction.impl.file.IrrecoverableResourceException: Error communicating with the GridFTP server
Caused by: java.net.ConnectException: Connection refused
	at org.globus.cog.karajan.workflow.nodes.functions.KException.function(KException.java:29)
	at org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:45)
	at org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
	at org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:335)
	at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125)
	at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:173)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:299)
	at org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
	at org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:46)
	at org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:51)
	at org.globus.cog.karajan.workflow.nodes.Sequential.executeChildren(Sequential.java:27)
	at org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.executeChildren(AbstractFunction.java:40)
	at org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.restart(FlowNode.java:240)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:281)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:393)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:332)
	at org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:227)
	at org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:125)
	at org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:99)
	at org.globus.cog.karajan.workflow.events.EventWorker.run(EventWorker.java:69)
Caused by: Error communicating with the GridFTP server
	task:dir:make @ vdl-int.k, line: 108
	sys:once @ vdl-int.k, line: 103
	vdl:initshareddir @ vdl-int.k, line: 342
	sys:try @ vdl-int.k, line: 342
	sys:set @ vdl-int.k, line: 341
	task:allocatehost @ vdl-int.k, line: 339
	vdl:execute2 @ execute-default.k, line: 23
	sys:restartonerror @ execute-default.k, line: 21
	sys:sequential @ execute-default.k, line: 19
	sys:try @ execute-default.k, line: 18
	sys:if @ execute-default.k, line: 17
	sys:then @ execute-default.k, line: 16
	sys:if @ execute-default.k, line: 15
	vdl:execute @ MolDyn-1-loops.kml, line: 323
	pre_antchmbr @ MolDyn-1-loops.kml, line: 540
	sys:parallel @ MolDyn-1-loops.kml, line: 539
	vdl:mainp @ MolDyn-1-loops.kml, line: 538
	mainp @ vdl.k, line: 148
	vdl:mains @ MolDyn-1-loops.kml, line: 537
	vdl:mains @ MolDyn-1-loops.kml, line: 537
	rlog:restartlog @ MolDyn-1-loops.kml, line: 535
	kernel:project @ MolDyn-1-loops.kml, line: 2
	MolDyn-1-loops-20071106-1523-zozhrurg
Caused by: org.globus.cog.abstraction.impl.file.IrrecoverableResourceException: Error communicating with the GridFTP server
Caused by: java.net.ConnectException: Connection refused
	at org.globus.cog.karajan.workflow.events.FailureNotificationEvent.<init>(FailureNotificationEvent.java:36)
	at org.globus.cog.karajan.workflow.events.FailureNotificationEvent.<init>(FailureNotificationEvent.java:42)
	at org.globus.cog.karajan.workflow.nodes.FlowNode.failImmediately(FlowNode.java:152)
	at org.globus.cog.karajan.workflow.nodes.grid.AbstractGridNode.taskFailed(AbstractGridNode.java:309)
	at org.globus.cog.karajan.workflow.nodes.grid.AbstractGridNode.statusChanged(AbstractGridNode.java:271)
	at org.globus.cog.karajan.scheduler.AbstractScheduler.fireJobStatusChangeEvent(AbstractScheduler.java:165)
	at org.globus.cog.karajan.scheduler.LateBindingScheduler.statusChanged(LateBindingScheduler.java:647)
	at org.globus.cog.karajan.scheduler.WeightedHostScoreScheduler.statusChanged(WeightedHostScoreScheduler.java:367)
	at org.griphyn.vdl.karajan.VDSAdaptiveScheduler.statusChanged(VDSAdaptiveScheduler.java:403)
	at org.globus.cog.abstraction.impl.common.task.TaskImpl.setStatus(TaskImpl.java:216)
	at org.globus.cog.abstraction.impl.file.CachingDelegatedFileOperationHandler.setTaskStatus(CachingDelegatedFileOperationHandler.java:71)
	at org.globus.cog.abstraction.impl.file.CachingDelegatedFileOperationHandler.submit(CachingDelegatedFileOperationHandler.java:54)
	at org.globus.cog.abstraction.impl.common.task.CachingFileOperationTaskHandler.submit(CachingFileOperationTaskHandler.java:28)
	at org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:86)
	at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431)
	at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668)
	at java.lang.Thread.run(Thread.java:595)
Caused by: org.globus.cog.abstraction.impl.file.IrrecoverableResourceException: Error communicating with the GridFTP server
	at org.globus.cog.abstraction.impl.file.ftp.AbstractFTPFileResource.translateException(AbstractFTPFileResource.java:38)
	at org.globus.cog.abstraction.impl.file.gridftp.old.FileResourceImpl.start(FileResourceImpl.java:109)
	at org.globus.cog.abstraction.impl.file.gridftp.FileResourceImpl.start(FileResourceImpl.java:47)
	at org.globus.cog.abstraction.impl.file.FileResourceCache.getResource(FileResourceCache.java:99)
	at org.globus.cog.abstraction.impl.file.CachingDelegatedFileOperationHandler.getResource(CachingDelegatedFileOperationHandler.java:78)
	at org.globus.cog.abstraction.impl.file.CachingDelegatedFileOperationHandler.submit(CachingDelegatedFileOperationHandler.java:40)
	... 7 more
Caused by: java.net.ConnectException: Connection refused
	at java.net.PlainSocketImpl.socketConnect(Native Method)
	at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
	at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
	at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
	at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
	at java.net.Socket.connect(Socket.java:507)
	at java.net.Socket.connect(Socket.java:457)
	at java.net.Socket.<init>(Socket.java:365)
	at java.net.Socket.<init>(Socket.java:265)
	at org.globus.net.SocketFactory.createSocket(SocketFactory.java:74)
	at org.globus.net.SocketFactory.createSocket(SocketFactory.java:53)
	at org.globus.ftp.vanilla.FTPControlChannel.open(FTPControlChannel.java:135)
	at org.globus.ftp.GridFTPClient.<init>(GridFTPClient.java:72)
	at org.globus.cog.abstraction.impl.file.gridftp.old.FileResourceImpl.start(FileResourceImpl.java:97)
	... 11 more
Execution failed:
	Could not initialize shared directory on Purdue
Caused by:
	Error communicating with the GridFTP server
Caused by:
	Connection refused
Swift finished - workflow had errors