Yes. I saw 101-FBchannel1_cwt-avgResults.Rdata to 101-FBchannel28_cwt-avgResults.Rdata 28 output files on the swift client, but all the files were empty.<br><br>Jing<br><br><br><div><span class="gmail_quote">On 8/20/07, <b class="gmail_sendername">
Mihael Hategan</b> <<a href="mailto:hategan@mcs.anl.gov" target="_blank" onclick="return top.js.OpenExtLink(window,event,this)">
hategan@mcs.anl.gov</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">On Mon, 2007-08-20 at 12:21 -0500, Jing Tie wrote:
<br>
> Yes. There is no *avgResults.Rdata under shared directory, only input<br>> file, scripts, wrapper.sh and seq.sh.<br><br>Did the job actually run?<br><br>><br>> Jing<br>><br>> On 8/20/07, Mihael Hategan <
<a href="mailto:hategan@mcs.anl.gov" target="_blank" onclick="return top.js.OpenExtLink(window,event,this)">hategan@mcs.anl.gov</a>> wrote:<br>> Not much we can do if the filesystem is broken.<br>> Did you check to confirm that the file is not there?
<br>><br>> Mihael
<br>><br>> On Mon, 2007-08-20 at 12:07 -0500, Jing Tie wrote:<br>> > Hi,<br>> ><br>> > Here is another problem. It seems like something wrong with<br>> GFS
<br>> > system.<br>> ><br>> > site: MIT_CMS<br>> > gatekeeper: <a href="http://ce01.cmsaf.mit.edu" target="_blank" onclick="return top.js.OpenExtLink(window,event,this)">
ce01.cmsaf.mit.edu</a><br>> > app_dir: /osg/app<br>> > data_dir: /osg/data
<br>> > condor_dir: /usr/local/condor/bin<br>> > R_dir: /osg/app/R- 2.5.1/bin/R<br>> ><br>> > output:<br>> > Application exception: Exception in getFile
<br>> > task:transfer @ vdl-int.k, line: 235<br>> > vdl:dostageout @ vdl-int.k, line: 378<br>> > vdl:execute2 @ execute-default.k, line: 22<br>> > vdl:execute @
sid-wf1.kml, line: 20<br>> > wavelettransf @ sid-wf1.kml, line: 362<br>> > batchtrials @ sid-wf1.kml, line: 402<br>> > vdl:mains @ sid-wf1.kml , line: 399
<br>
> > Caused by:<br>> org.globus.cog.abstraction.impl.file.FileResourceException:<br>> > Exception in getFile<br>> > Caused by: org.globus.ftp.exception.ServerException: Server
<br>> refused<br>> > performing the request. Custom message: (error code<br>> 1) cwtsmall<br>> > failed<br>> > Provenance graph saved in sid-wf1-7thy5mbfh09e1.dot
<br>> > The following errors have occurred:<br>> > 1. Application "cwtsmall" failed (Exception in getFile<br>> > Caused by:<br>> > Server refused performing the request. Custom
<br>> message: (error code<br>> > 1)<br>> > [Nested exception message: Nested exception is<br>> > org.globus.ftp.exception.UnexpectedReplyCodeException :<br>> > Custom message: Unexpected reply:
<br>> > 500-Command failed. :<br>> > globus_gridftp_server_file.c:globus_l_gfs_file_send:2190:<br>> > 500-globus_l_gfs_file_open failed.<br>> ><br>> 500-globus_gridftp_server_file.c:globus_l_gfs_file_open:1694:
<br>> > 500-globus_xio_register_open failed.<br>> > 500-globus_xio_file_driver.c:globus_l_xio_file_open:438:<br>> > 500-Unable to open<br>> ><br>> file /osgfs/data/sid-wf1-7thy5mbfh09e1/shared//101-FBchannel16_cwt-
avgResults.Rdata<br>> > 500-globus_xio_file_driver.c:globus_l_xio_file_open:381:<br>> > 500-System error in open: No such file or directory<br>> > 500-globus_xio: A system call failed: No such file or
<br>> directory<br>> > 500 End.])<br>> > Arguments: "scripts/runWaveletsAvg.R, 101, FB"<br>> > Host: UCSDT2<br>> > Directory: sid-wf1-7thy5mbfh09e1/cwtsmall-mb3l3rfi
<br>> > STDERR:<br>> > STDOUT:<br>> > Errors detected. Cleanup not done.<br>> > Execution completed with errors<br>> > sys:throw @
vdl.k, line: 140<br>> > vdl:mains @ sid-wf1.kml, line: 399<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:413)
<br>
> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:417)<br>> > at<br>> > org.globus.cog.karajan.workflow.nodes.GenerateErrorNode.post
<br>> > (GenerateErrorNode.java:28)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted<br>> > at
<br>> ><br>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java :33)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowNode.event
(FlowNode.java:334)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)<br>> > at<br>> org.globus.cog.karajan.workflow.events.EventBus.sendHooked
<br>> > (EventBus.java:97)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent (FlowNode.java:172)<br>> > at
<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.executeChildren
(AbstractFunction.java:37)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63)<br>> > at<br>>
org.globus.cog.karajan.workflow.nodes.FlowNode.restart<br>> > (FlowNode.java :239)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java
:280)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:392)<br>> > at<br>> org.globus.cog.karajan.workflow.nodes.FlowNode.event
<br>> > (FlowNode.java:331)<br>> > at<br>> ><br>> org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:227)<br>> > at
<br>> ><br>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)<br>> > at<br>> org.globus.cog.karajan.workflow.events.EventBus.sendHooked<br>
> > (
EventBus.java:97)<br>> > at<br>> > org.globus.cog.karajan.workflow.events.EventWorker.run<br>> (EventWorker.java:69)<br>> ><br>> > Many thanks,<br>
> > Jing<br>> > _______________________________________________<br>> > Swift-user mailing list<br>> > <a href="mailto:Swift-user@ci.uchicago.edu" target="_blank" onclick="return top.js.OpenExtLink(window,event,this)">
Swift-user@ci.uchicago.edu
</a><br>> > <a href="http://mail.ci.uchicago.edu/mailman/listinfo/swift-user" target="_blank" onclick="return top.js.OpenExtLink(window,event,this)">http://mail.ci.uchicago.edu/mailman/listinfo/swift-user</a>
<br>><br>><br><br></blockquote></div><br>