<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">I have updated the bugzilla bug with the below directories: <a href="https://bugzilla.mcs.anl.gov/swift/show_bug.cgi?id=720">https://bugzilla.mcs.anl.gov/swift/show_bug.cgi?id=720</a><div><br></div><div>I have also added another directory showing the same behavior</div><div>/gpfs/pads/swift/jonmon/Swift/bugs/SciColSim/run054</div><div><br></div><div>There is a jstack.log file in that directory. All three of the run directories show that jobs get stuck in the initialized state and the hang checker kicks in.</div><div><br></div><div><div><div><div>On Feb 22, 2012, at 5:05 PM, Jonathan Monette wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>This has been done. I have also moved the run that Ketan had produced to PADS.<br><br>/gpfs/pads/swift/jonmon/Swift/bugs/SciColSim/run002 <-----Ketan's run<br>/gpfs/pads/swift/jonmon/Swift/bugs/SciColSim/run047 <-----My run(has a jstack.log file, also more recent)<br><br>On Feb 22, 2012, at 4:33 PM, Jonathan Monette wrote:<br><br><blockquote type="cite">Ok. I have killed the process and I am in the process of copying the run directory from the lustre file system on Beagle to /gpfs/pads<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On Feb 22, 2012, at 4:28 PM, Mihael Hategan wrote:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><blockquote type="cite">On Wed, 2012-02-22 at 15:45 -0600, Jonathan Monette wrote:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Mihael,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> I have a hung Java process showing this error right now, 2 jobs are<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">stuck in the initializing state. I have a jstack -l <pid> of this<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">hung java process. Is there anything else you need before I kill it?<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Do you need any other probing information from this process other than<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">this jstack output?<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">I don't think so.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">Swift-devel mailing list<br></blockquote><blockquote type="cite"><a href="mailto:Swift-devel@ci.uchicago.edu">Swift-devel@ci.uchicago.edu</a><br></blockquote><blockquote type="cite"><a href="https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel">https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel</a><br></blockquote><br>_______________________________________________<br>Swift-devel mailing list<br><a href="mailto:Swift-devel@ci.uchicago.edu">Swift-devel@ci.uchicago.edu</a><br>https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel<br></div></blockquote></div><br></div></div></body></html>