<br><br><div class="gmail_quote">On Tue, Oct 11, 2011 at 4:23 PM, Mihael Hategan <span dir="ltr"><<a href="mailto:hategan@mcs.anl.gov">hategan@mcs.anl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Is this with a persistent coaster service?<br></blockquote><div><br>admittedly i have not used persistent coaster service...should i? i feel like it's documented *somewhere* (?)<br><br>for now i've tried setting 'sitedir.keep=true' in the config so maybe it won't try to run the cleanup job...we'll see (waiting in q)<br>
</div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<div><div></div><div class="h5"><br>
On Tue, 2011-10-11 at 12:05 -0700, Sarah Kenny wrote:<br>
><br>
><br>
> On Tue, Oct 11, 2011 at 11:49 AM, David Kelly <<a href="mailto:davidk@ci.uchicago.edu">davidk@ci.uchicago.edu</a>><br>
> wrote:<br>
><br>
> That could be it.. maybe a cleanup script is not getting the<br>
> right parameters and failing. Do you happen to have a copy of<br>
> the coaster log?<br>
><br>
> just put it in /home/skenny/swift_logs<br>
><br>
><br>
> Maybe there will be some clues in there.<br>
><br>
> ----- Original Message -----<br>
> > From: "Sarah Kenny" <<a href="mailto:skenny@uchicago.edu">skenny@uchicago.edu</a>><br>
><br>
> > To: "David Kelly" <<a href="mailto:davidk@ci.uchicago.edu">davidk@ci.uchicago.edu</a>><br>
> > Cc: "Swift Devel" <<a href="mailto:swift-devel@ci.uchicago.edu">swift-devel@ci.uchicago.edu</a>>, "Swift<br>
> User" <<a href="mailto:swift-user@ci.uchicago.edu">swift-user@ci.uchicago.edu</a>>, "Justin M Wozniak"<br>
> > <<a href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a>><br>
><br>
> > Sent: Tuesday, October 11, 2011 1:32:37 PM<br>
> > Subject: Re: [Swift-user] gram on ranger<br>
><br>
> > so, this workflow completes all the jobs but then just hangs<br>
> > indefinitely at the end...maybe a stray cleanup job?<br>
> ><br>
> > log is here:<br>
> ><br>
> > /home/skenny/swift_logs/corr-20111010-2104-fl5yngd9.log<br>
> ><br>
> > just tweaked the sites file a bit from what david sent me:<br>
> ><br>
> > <config><br>
> > <pool handle="RANGER"><br>
> > <execution provider="coaster" jobManager="gt2:SGE" url="<br>
> > <a href="http://gatekeeper.ranger.tacc.teragrid.org" target="_blank">gatekeeper.ranger.tacc.teragrid.org</a> "/><br>
> > <filesystem provider="gsiftp" url="gsiftp://<br>
><br>
> > <a href="http://gridftp.ranger.tacc.teragrid.org" target="_blank">gridftp.ranger.tacc.teragrid.org</a> "/><br>
><br>
> > <profile namespace="globus" key="maxtime">28800</profile><br>
> > <profile namespace="globus"<br>
> key="maxWallTime">00:15:00</profile><br>
> > <profile namespace="globus" key="jobsPerNode">1</profile><br>
> > <profile namespace="globus"<br>
> key="nodeGranularity">64</profile><br>
> > <profile namespace="globus" key="maxNodes">256</profile><br>
> > <profile namespace="globus" key="queue">normal</profile><br>
> > <profile namespace="karajan" key="jobThrottle">1</profile><br>
> > <profile namespace="globus"<br>
> key="project">TG-DBS080004N</profile><br>
> > <profile namespace="globus" key="pe">16way</profile><br>
> > <profile namespace="karajan"<br>
> key="initialScore">10000</profile><br>
> ><br>
> <workdirectory>/work/00043/tg457040/sidgrid_out/skenny</workdirectory><br>
> > </pool><br>
> > </config><br>
> ><br>
> ><br>
> ><br>
> > On Mon, Oct 10, 2011 at 3:43 PM, Sarah Kenny <<br>
> <a href="mailto:skenny@uchicago.edu">skenny@uchicago.edu</a> ><br>
> > wrote:<br>
> ><br>
> ><br>
> > ok, thanks, got in the queue now...also, realized my last<br>
> run may have<br>
> > been using the old swift. apparently i had SWIFT_HOME set in<br>
> my env<br>
> > and that overrides the newer swift i had set in my PATH.<br>
> ><br>
> > ~sk<br>
> ><br>
> ><br>
> ><br>
> > On Mon, Oct 10, 2011 at 12:28 PM, David Kelly <<br>
> <a href="mailto:davidk@ci.uchicago.edu">davidk@ci.uchicago.edu</a><br>
> > > wrote:<br>
> ><br>
> ><br>
> ><br>
> ><br>
> ><br>
> > Sarah,<br>
> ><br>
> > Can you give this another try with the latest 0.93? I made<br>
> some<br>
> > changes to the coaster and sge providers and was able to get<br>
> it<br>
> > working with a simple catns script. Here is the<br>
> configuration file I<br>
> > was using:<br>
> ><br>
> > <config><br>
> > <pool handle="ranger"><br>
> > <execution provider="coaster" jobManager="gt2:SGE" url="<br>
> > <a href="http://gatekeeper.ranger.tacc.teragrid.org" target="_blank">gatekeeper.ranger.tacc.teragrid.org</a> "/><br>
> ><br>
> > <filesystem provider="gsiftp" url="gsiftp://<br>
><br>
> > <a href="http://gridftp.ranger.tacc.teragrid.org" target="_blank">gridftp.ranger.tacc.teragrid.org</a> "/><br>
><br>
> > <profile namespace="globus" key="maxtime">3600</profile><br>
> > <profile namespace="globus"<br>
> key="maxWallTime">00:00:03</profile><br>
> > <profile namespace="globus" key="jobsPerNode">1</profile><br>
> > <profile namespace="globus"<br>
> key="nodeGranularity">16</profile><br>
> > <profile namespace="globus" key="maxNodes">16</profile><br>
> > <profile namespace="globus"<br>
> key="queue">development</profile><br>
> > <profile namespace="karajan" key="jobThrottle">0.9</profile><br>
> ><br>
> > <profile namespace="globus"<br>
> key="project">TG-DBS080004N</profile><br>
> ><br>
> > <profile namespace="globus" key="pe">16way</profile><br>
> ><br>
> <workdirectory>/share/home/01503/davidkel/swiftwork</workdirectory><br>
> > </pool><br>
> > </config><br>
> ><br>
> > Thanks,<br>
> ><br>
> > David<br>
> ><br>
> > ----- Original Message -----<br>
> ><br>
> > > From: "Sarah Kenny" < <a href="mailto:skenny@uchicago.edu">skenny@uchicago.edu</a> ><br>
> > > To: "Justin M Wozniak" < <a href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a> ><br>
> > > Cc: "Swift Devel" < <a href="mailto:swift-devel@ci.uchicago.edu">swift-devel@ci.uchicago.edu</a> >, "Swift<br>
> User" <<br>
> > > <a href="mailto:swift-user@ci.uchicago.edu">swift-user@ci.uchicago.edu</a> ><br>
> ><br>
> ><br>
> ><br>
> > > Sent: Friday, October 7, 2011 3:13:57 PM<br>
> > > Subject: Re: [Swift-user] gram on ranger<br>
> > > /home/skenny/swift_logs/dummy-20111005-0126-6575n7x5.log<br>
> > ><br>
> > > on ci<br>
> > ><br>
> > ><br>
> > > On Fri, Oct 7, 2011 at 8:16 AM, Justin M Wozniak <<br>
> > > <a href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a><br>
> > > > wrote:<br>
> > ><br>
> > ><br>
> > ><br>
> > > Can I take a look at the log?<br>
> > ><br>
> > ><br>
> > ><br>
> > ><br>
> > > On Thu, 6 Oct 2011, Sarah Kenny wrote:<br>
> > ><br>
> > ><br>
> > ><br>
> > > hey all, i'm trying to submit to gram on ranger using the<br>
> latest<br>
> > > swift<br>
> > > (built from trunk). it failes like so:<br>
> > ><br>
> > > Cannot submit job<br>
> > > Caused by:<br>
> > > org.globus.cog.abstraction. impl.common.task.<br>
> > > TaskSubmissionException:<br>
> > > Cannot<br>
> > > submit job<br>
> > > Caused by: org.globus.gram.GramException: Parameter not<br>
> supported<br>
> > > Cannot submit job<br>
> > ><br>
> > > the gram log was saying first that 'jobsPerNode' is not<br>
> supported so<br>
> > > i<br>
> > > changed it to workersPerNode and then it was saying<br>
> 'maxnodes' is<br>
> > > not<br>
> > > supported. here's my sites file:<br>
> > ><br>
> > > <config><br>
> > > <pool handle="RANGER"><br>
> > > <profile namespace="karajan" key="initialScore">10000</<br>
> profile><br>
> > > <profile namespace="karajan" key="jobThrottle">1</profile><br>
> > > <profile namespace="globus" key="maxWallTime">00:15:00</<br>
> profile><br>
> > > <profile namespace="globus" key="maxTime">86400</profile><br>
> > > <profile namespace="globus" key="slots">1</profile><br>
> > > <profile namespace="globus" key="maxNodes">256</profile><br>
> > > <profile namespace="globus" key="pe">16way</profile><br>
> > > <profile namespace="globus" key="workersPerNode">1</<br>
> profile><br>
> > > <profile namespace="globus" key="nodeGranularity">64</<br>
> profile><br>
> > > <profile namespace="globus" key="queue">normal</profile><br>
> > > <profile namespace="globus" key="project">TG-DBS080004N</<br>
> profile><br>
> > > <filesystem provider="gsiftp" url="gsiftp://<br>
> > > gridftp.ranger.tacc.teragrid. org "/><br>
> ><br>
> > > <execution provider="coaster" jobManager="gt2:gt2:SGE"<br>
> url="<br>
> > > gatekeeper.ranger.tacc. <a href="http://teragrid.org" target="_blank">teragrid.org</a> "/><br>
> ><br>
> > > <execution provider="gt2" jobManager="SGE" url="<br>
> > > gatekeeper.ranger.tacc. <a href="http://teragrid.org" target="_blank">teragrid.org</a> "/><br>
> > > <workdirectory>/work/00043/ tg457040</workdirectory><br>
> ><br>
> > > </pool><br>
> > > </config><br>
> > ><br>
> > > thoughts? ideas?<br>
> > ><br>
> > > --<br>
> > > Justin M Wozniak<br>
> > ><br>
> > ><br>
> > ><br>
> > > --<br>
> > > Sarah Kenny<br>
> > > Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci<br>
> III<br>
> > > University of California Irvine, Dept. of Neurology ~<br>
> <a href="tel:773-818-8300" value="+17738188300">773-818-8300</a><br>
> > ><br>
> > ><br>
> > > _______________________________________________<br>
> > > Swift-user mailing list<br>
> > > <a href="mailto:Swift-user@ci.uchicago.edu">Swift-user@ci.uchicago.edu</a><br>
> > ><br>
> <a href="https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user" target="_blank">https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user</a><br>
> ><br>
> ><br>
> ><br>
> ><br>
> ><br>
> ><br>
> > --<br>
> > Sarah Kenny<br>
> > Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III<br>
> > University of California Irvine, Dept. of Neurology ~<br>
> <a href="tel:773-818-8300" value="+17738188300">773-818-8300</a><br>
> ><br>
> ><br>
> ><br>
> ><br>
> > --<br>
> > Sarah Kenny<br>
> > Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III<br>
> > University of California Irvine, Dept. of Neurology ~<br>
> <a href="tel:773-818-8300" value="+17738188300">773-818-8300</a><br>
><br>
><br>
><br>
><br>
> --<br>
> Sarah Kenny<br>
> Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III<br>
> University of California Irvine, Dept. of Neurology ~ <a href="tel:773-818-8300" value="+17738188300">773-818-8300</a><br>
><br>
> _______________________________________________<br>
> Swift-user mailing list<br>
> <a href="mailto:Swift-user@ci.uchicago.edu">Swift-user@ci.uchicago.edu</a><br>
> <a href="https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user" target="_blank">https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user</a><br>
<br>
<br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br>Sarah Kenny<br>Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III<br>University of California Irvine, Dept. of Neurology ~ 773-818-8300<br><br>