This suprises me because, I do not see that (none) in my commandline.<br><br><div class="gmail_quote">On Sat, Jun 4, 2011 at 12:38 PM, Jonathan S Monette <span dir="ltr"><<a href="mailto:jonmon@utexas.edu">jonmon@utexas.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">I added <div><div>echo ${OPTIONS}</div><div> echo ${COG_OPTS}</div><div> echo ${LOCALCLASSPATH}</div><div> echo ${EXEC}</div>
<div> echo ${CMDLINE}</div><div><br></div><div>to the script. It seems in the $OPTIONS variable this appears.</div>
<div><br></div><div>-Xmx8192M -Djava.endorsed.dirs=/home/jonmon/Library/Swift/swift-0.92/bin/../lib/endorsed -DUID=1881 -DGLOBUS_HOSTNAME=login2.beagle.ci.uchicago.edu.(none) -DCOG_INSTALL_PATH=/home/jonmon/Library/Swift/swift-0.92/bin/.. -Dswift.home=/home/jonmon/Library/Swift/swift-0.92/bin/.. -Djava.security.egd=file:///dev/urandom</div>
<div><br></div><div>There is the line DGLOBUS_HOSTNAME=login2.beagle.ci.uchicago.edu.(none) I believe that is the parenthesis that is causing this to fail. Now How do I fix it.</div><div><div></div><div class="h5"><br>
<div class="gmail_quote">On Sat, Jun 4, 2011 at 12:36 PM, Jonathan S Monette <span dir="ltr"><<a href="mailto:jonmon@utexas.edu" target="_blank">jonmon@utexas.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">I may have found the error. I download 0.92 binaries and changed the swift command script. I added<div><div></div><div>
<br><br><div class="gmail_quote">On Sat, Jun 4, 2011 at 12:26 PM, Jonathan S Monette <span dir="ltr"><<a href="mailto:jonmon@utexas.edu" target="_blank">jonmon@utexas.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Same result. Same error<div><div></div><div><br><br><div class="gmail_quote">On Sat, Jun 4, 2011 at 12:24 PM, ketan <span dir="ltr"><<a href="mailto:ketancmaheshwari@gmail.com" target="_blank">ketancmaheshwari@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#ffffff" text="#000000">
can you try running the commandline by copying from run.sh and
pasting it at the prompt.<div><div></div><div><br>
<br>
On 6/4/11 12:18 PM, Jonathan S Monette wrote:
<blockquote type="cite">I do have that project. I did projects --avail and
got back
<div><br>
</div>
<div>
<div>Project PI Title</div>
<div>------------------------------------------------------------------------------</div>
<div>CI-CCR000013 Michael Wilde The Swift Parallel
Scripting System</div>
<div><br>
</div>
<div>Here is my run.sh file. I execute with ./run.sh after I
did chmod +x run.sh</div>
<div><br>
</div>
<div>
<div>#!/bin/bash</div>
<div>swift -config cf -tc.file tc -sites.file
beagle-coaster.xml catsn.swift -n=1</div>
</div>
<div><br>
</div>
<div>I do have sh and cat in my path. I can execute them. Here
is what which sh and which cat produced.</div>
<div>
<br>
</div>
<div>sh is /usr/bin/sh</div>
<div>cat is /bin/cat</div>
<br>
<div class="gmail_quote">On Sat, Jun 4, 2011 at 12:10 PM, ketan
<span dir="ltr"><<a href="mailto:ketancmaheshwari@gmail.com" target="_blank">ketancmaheshwari@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204, 204, 204);padding-left:1ex">
<div bgcolor="#ffffff" text="#000000"> Can you try "projects
--avail" command on beagle to see if you are member of a
project.<br>
<br>
Else you will need to request membership. You can do this
from this page:<br>
<br>
<a href="http://pads.ci.uchicago.edu/access/" target="_blank">http://pads.ci.uchicago.edu/access/</a><br>
<br>
In any case, your error does not seem to be because of the
above. Looks like '(' has sneaked in because of some
unexpected typo in commandline .. can you doublecheck it.<br>
<br>
Also can you make sure that you have all the files: tc,
beagle-coasters.xml cf in PATH, ie. are you able to access
them w/o ./
<div>
<div><br>
<br>
On 6/4/11 12:03 PM, Jonathan S Monette wrote: </div>
</div>
<blockquote type="cite">
<div>
<div>I did change the work directory. I
however did not change the project name. I do not
know my project name so I kept the same project that
was in there. Here is my modified
beagle-coasters.xml
<div><br>
</div>
</div>
</div>
<div>
<div>
<div>
<div><config></div>
<div> <pool handle="pbs"></div>
<div> <execution provider="coaster"
jobmanager="local:pbs"/></div>
<div> <profile namespace="globus"
key="project">CI-CCR000013</profile></div>
<div><br>
</div>
<div> <profile namespace="globus"
key="ppn">24:cray:pack</profile></div>
<div><br>
</div>
<div> <profile namespace="globus"
key="workersPerNode">24</profile></div>
<div> <profile namespace="globus"
key="maxTime">1000</profile></div>
<div> <profile namespace="globus"
key="slots">1</profile></div>
<div> <profile namespace="globus"
key="nodeGranularity">1</profile></div>
<div> <profile namespace="globus"
key="maxNodes">1</profile></div>
<div><br>
</div>
<div> <profile namespace="karajan"
key="jobThrottle">.63</profile></div>
<div> <profile namespace="karajan"
key="initialScore">10000</profile></div>
<div><br>
</div>
<div> <filesystem provider="local"/></div>
<div> <workdirectory
>/lustre/beagle/jonmon/Swift/work</workdirectory></div>
<div> </pool></div>
<div></config></div>
<div><br>
</div>
<br>
</div>
</div>
<div class="gmail_quote">
<div>
<div>On Sat, Jun 4, 2011 at 12:00 PM,
Ketan Maheshwari <span dir="ltr"><<a href="mailto:ketancmaheshwari@gmail.com" target="_blank">ketancmaheshwari@gmail.com</a>></span>
wrote:<br>
</div>
</div>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204, 204, 204);padding-left:1ex">
<div>
<div>Jon,<br>
<br>
Thanks for trying out catsn on Beagle. <br>
<br>
I just tried it myself but could not reproduce
the error you are getting. Have you made the
changes that are mentioned in the README:<br>
==<br>
Change workdir location in beagle-coaster.xml<br>
Change the project entry in the
beagle-coaster.xml to your project name<br>
==<br>
<font color="#888888"><br>
Ketan</font> </div>
</div>
<div>
<div><br>
<br>
<div class="gmail_quote">
<div>
<div>On Sat, Jun 4, 2011 at
11:50 AM, Jonathan S Monette <span dir="ltr"><<a href="mailto:jonmon@utexas.edu" target="_blank">jonmon@utexas.edu</a>></span>
wrote:<br>
</div>
</div>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204, 204, 204);padding-left:1ex">
<div>
<div>Hello,
<div> I am trying to run the catsn
test on beagle using the files in
~ketan/catsn. I have copied over
this directory over to my home
directory and I believe I set it up
correctly. I did module load swift
and the ran run.sh that was in this
directory. I get this error.</div>
<div><br>
</div>
</div>
</div>
<div>
<div>
<div>
<div>/soft/swift/0.92/bin/swift:
eval: line 152: syntax error near
unexpected token `('</div>
</div>
</div>
<div>/soft/swift/0.92/bin/swift: eval:
line 152: `java -Xmx8192M
-Djava.endorsed.dirs=/soft/swift/0.92/bin/../lib/endorsed
-DUID=1881
-DGLOBUS_HOSTNAME=login2.beagle.ci.uchicago.edu.(none)
-DCOG_INSTALL_PATH=/soft/swift/0.92/bin/..
-Dswift.home=/soft/swift/0.92/bin/..
-Djava.security.egd=<a>file:///dev/urandom</a>
-classpath
/soft/swift/0.92/bin/../etc:/soft/swift/0.92/bin/../libexec:/soft/swift/0.92/bin/../lib/addressing-1.0.jar:/soft/swift/0.92/bin/../lib/ant.jar:/soft/swift/0.92/bin/../lib/antlr-2.7.5.jar:/soft/swift/0.92/bin/../lib/axis.jar:/soft/swift/0.92/bin/../lib/axis-url.jar:/soft/swift/0.92/bin/../lib/backport-util-concurrent.jar:/soft/swift/0.92/bin/../lib/castor-0.9.6.jar:/soft/swift/0.92/bin/../lib/coaster-bootstrap.jar:/soft/swift/0.92/bin/../lib/cog-abstraction-common-2.4.jar:/soft/swift/0.92/bin/../lib/cog-axis.jar:/soft/swift/0.92/bin/../lib/cog-grapheditor-0.47.jar:/soft/swift/0.92/bin/../lib/cog-jglobus-1.7.0.jar:/soft/swift/0.92/bin/../lib/cog-karajan-0.36-dev.jar:/soft/swift/0.92/bin/../lib/cog-provider-clref-gt4_0_0.jar:/soft/swift/0.92/bin/../lib/cog-provider-coaster-0.3.jar:/soft/swift/0.92/bin/../lib/cog-provider-dcache-0.1.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt2-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt4_0_0-2.5.jar:/soft/swift/0.92/bin/../lib/cog-pro
vider-local-2.2.jar:/soft/swift/0.92/bin/../lib/cog-provider-localscheduler-0.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-ssh-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-webdav-2.1.jar:/soft/swift/0.92/bin/../lib/cog-resources-1.0.jar:/soft/swift/0.92/bin/../lib/cog-swift-svn.jar:/soft/swift/0.92/bin/../lib/cog-trap-1.0.jar:/soft/swift/0.92/bin/../lib/cog-url.jar:/soft/swift/0.92/bin/../lib/cog-util-0.92.jar:/soft/swift/0.92/bin/../lib/commonj.jar:/soft/swift/0.92/bin/../lib/commons-beanutils.jar:/soft/swift/0.92/bin/../lib/commons-collections-3.0.jar:/soft/swift/0.92/bin/../lib/commons-digester.jar:/soft/swift/0.92/bin/../lib/commons-discovery.jar:/soft/swift/0.92/bin/../lib/commons-httpclient.jar:/soft/swift/0.92/bin/../lib/commons-logging-1.1.jar:/soft/swift/0.92/bin/../lib/concurrent.jar:/soft/swift/0.92/bin/../lib/cryptix32.jar:/soft/swift/0.92/bin/../lib/cryptix-asn1.jar:/soft/swift/0.92/bin/../lib/cryptix.jar:/soft/swift/0.92/bin/../lib/globus_delegation_servic
e.jar:/soft/swift/0.92/bin/../lib/globus_delegation_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_mds_aggregator_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_service.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rft_stubs.jar:/soft/swift/0.92/bin/../lib/gram-client.jar:/soft/swift/0.92/bin/../lib/gram-stubs.jar:/soft/swift/0.92/bin/../lib/gram-utils.jar:/soft/swift/0.92/bin/../lib/j2ssh-common-0.2.2.jar:/soft/swift/0.92/bin/../lib/j2ssh-core-0.2.2-patch-b.jar:/soft/swift/0.92/bin/../lib/jakarta-regexp-1.2.jar:/soft/swift/0.92/bin/../lib/jakarta-slide-webdavlib-2.0.jar:/soft/swift/0.92/bin/../lib/jaxrpc.jar:/soft/swift/0.92/bin/../lib/jce-jdk13-131.jar:/soft/swift/0.92/bin/../lib/jgss.jar:/soft/swift/0.92/bin/../lib/jline-0.9.94.jar:/soft/swift/0.92/bin/../lib/jsr173_1.0_api.jar:/soft/swift/0.92/bin/../lib/jug-lgpl-2.0.0.jar:/soft/swift/0.92/bin/../lib/junit.jar:/soft/swift/0.92/bin/../lib/log4j-1.2
.8.jar:/soft/swift/0.92/bin/../lib/naming-common.jar:/soft/swift/0.92/bin/../lib/naming-factory.jar:/soft/swift/0.92/bin/../lib/naming-java.jar:/soft/swift/0.92/bin/../lib/naming-resources.jar:/soft/swift/0.92/bin/../lib/opensaml.jar:/soft/swift/0.92/bin/../lib/puretls.jar:/soft/swift/0.92/bin/../lib/resolver.jar:/soft/swift/0.92/bin/../lib/saaj.jar:/soft/swift/0.92/bin/../lib/stringtemplate.jar:/soft/swift/0.92/bin/../lib/vdldefinitions.jar:/soft/swift/0.92/bin/../lib/wsdl4j.jar:/soft/swift/0.92/bin/../lib/wsrf_core.jar:/soft/swift/0.92/bin/../lib/wsrf_core_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_index_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_usefulrp_schema_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_provider_jce.jar:/soft/swift/0.92/bin/../lib/wsrf_tools.jar:/soft/swift/0.92/bin/../lib/wss4j.jar:/soft/swift/0.92/bin/../lib/xalan.jar:/soft/swift/0.92/bin/../lib/xbean.jar:/soft/swift/0.92/bin/../lib/xbean_xpath.jar:/soft/swift/0.92/bin/../lib/xercesImpl.jar:/soft
/swift/0.92/bin/../lib/xml-apis.jar:/soft/swift/0.92/bin/../lib/xmlsec.jar:/soft/swift/0.92/bin/../lib/xpp3-1.1.3.4d_b4_min.jar:/soft/swift/0.92/bin/../lib/xstream-1.1.1-patched.jar:
org.griphyn.vdl.karajan.Loader
'-config' 'cf' '-tc.file' 'tc'
'-sites.file' 'beagle-coaster.xml'
'catsn.swift' '-n=1''</div>
<div>
<div><br>
</div>
<div>I there something else I need to
load on beagle to make swift run
accordingly?</div>
<br>
-- <br>
<p>Any intelligent fool can make
things bigger and more complex... It
takes a touch of genius - and a lot
of courage to move in the opposite
direction.</p>
<p>- Albert Einstein</p>
<br>
</div>
</div>
</blockquote>
</div>
<br>
</div>
</div>
</blockquote>
</div>
<div> <br>
<br clear="all">
<br>
-- <br>
<p>Any intelligent fool can make things bigger and
more complex... It takes a touch of genius - and a
lot of courage to move in the opposite direction.</p>
<p>- Albert Einstein</p>
<br>
</div>
</div>
</blockquote>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<br>
-- <br>
<p>Any intelligent fool can make things bigger and more
complex... It takes a touch of genius - and a lot of courage
to move in the opposite direction.</p>
<p>- Albert Einstein</p>
<br>
</div>
</blockquote>
</div></div></div>
</blockquote></div><br><br clear="all"><br>-- <br>
<p>Any intelligent fool can make things bigger and more complex... It takes a touch of genius - and a lot of courage to move in the opposite direction.</p>
<p>- Albert Einstein</p><br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br>
<p>Any intelligent fool can make things bigger and more complex... It takes a touch of genius - and a lot of courage to move in the opposite direction.</p>
<p>- Albert Einstein</p><br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br>
<p>Any intelligent fool can make things bigger and more complex... It takes a touch of genius - and a lot of courage to move in the opposite direction.</p>
<p>- Albert Einstein</p><br>
</div></div></div>
</blockquote></div><br>