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Ok, I see that there is this variable in the commandline option that
might be causing the error:<br>
<br>
-DGLOBUS_HOSTNAME=login2.beagle.ci.uchicago.edu.(none)<br>
<br>
I do not know why there is (none) in your environment. <br>
On 6/4/11 12:26 PM, Jonathan S Monette wrote:
<blockquote
cite="mid:BANLkTikA2NCzFTrYApG3PiETH+2uh7-M1g@mail.gmail.com"
type="cite">Same result. Same error<br>
<br>
<div class="gmail_quote">On Sat, Jun 4, 2011 at 12:24 PM, ketan <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:ketancmaheshwari@gmail.com">ketancmaheshwari@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;">
<div bgcolor="#ffffff" text="#000000"> can you try running the
commandline by copying from run.sh and pasting it at the
prompt.
<div>
<div class="h5"><br>
<br>
On 6/4/11 12:18 PM, Jonathan S Monette wrote:
<blockquote type="cite">I do have that project. I did
projects --avail and got back
<div><br>
</div>
<div>
<div>Project PI Title</div>
<div>------------------------------------------------------------------------------</div>
<div>CI-CCR000013 Michael Wilde The Swift
Parallel Scripting System</div>
<div><br>
</div>
<div>Here is my run.sh file. I execute with
./run.sh after I did chmod +x run.sh</div>
<div><br>
</div>
<div>
<div>#!/bin/bash</div>
<div>swift -config cf -tc.file tc -sites.file
beagle-coaster.xml catsn.swift -n=1</div>
</div>
<div><br>
</div>
<div>I do have sh and cat in my path. I can execute
them. Here is what which sh and which cat
produced.</div>
<div> <br>
</div>
<div>sh is /usr/bin/sh</div>
<div>cat is /bin/cat</div>
<br>
<div class="gmail_quote">On Sat, Jun 4, 2011 at
12:10 PM, ketan <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:ketancmaheshwari@gmail.com"
target="_blank">ketancmaheshwari@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt
0pt 0pt 0.8ex; border-left: 1px solid rgb(204,
204, 204); padding-left: 1ex;">
<div bgcolor="#ffffff" text="#000000"> Can you
try "projects --avail" command on beagle to
see if you are member of a project.<br>
<br>
Else you will need to request membership. You
can do this from this page:<br>
<br>
<a moz-do-not-send="true"
href="http://pads.ci.uchicago.edu/access/"
target="_blank">http://pads.ci.uchicago.edu/access/</a><br>
<br>
In any case, your error does not seem to be
because of the above. Looks like '(' has
sneaked in because of some unexpected typo in
commandline .. can you doublecheck it.<br>
<br>
Also can you make sure that you have all the
files: tc, beagle-coasters.xml cf in PATH, ie.
are you able to access them w/o ./
<div>
<div><br>
<br>
On 6/4/11 12:03 PM, Jonathan S Monette
wrote: </div>
</div>
<blockquote type="cite">
<div>
<div>I did change the work directory. I
however did not change the project name.
I do not know my project name so I kept
the same project that was in there.
Here is my modified beagle-coasters.xml
<div><br>
</div>
</div>
</div>
<div>
<div>
<div>
<div><config></div>
<div> <pool handle="pbs"></div>
<div> <execution
provider="coaster"
jobmanager="local:pbs"/></div>
<div> <profile
namespace="globus"
key="project">CI-CCR000013</profile></div>
<div><br>
</div>
<div> <profile
namespace="globus"
key="ppn">24:cray:pack</profile></div>
<div><br>
</div>
<div> <profile
namespace="globus"
key="workersPerNode">24</profile></div>
<div> <profile
namespace="globus"
key="maxTime">1000</profile></div>
<div> <profile
namespace="globus"
key="slots">1</profile></div>
<div> <profile
namespace="globus"
key="nodeGranularity">1</profile></div>
<div> <profile
namespace="globus"
key="maxNodes">1</profile></div>
<div><br>
</div>
<div> <profile
namespace="karajan"
key="jobThrottle">.63</profile></div>
<div> <profile
namespace="karajan"
key="initialScore">10000</profile></div>
<div><br>
</div>
<div> <filesystem
provider="local"/></div>
<div> <workdirectory
>/lustre/beagle/jonmon/Swift/work</workdirectory></div>
<div> </pool></div>
<div></config></div>
<div><br>
</div>
<br>
</div>
</div>
<div class="gmail_quote">
<div>
<div>On Sat, Jun 4, 2011 at 12:00 PM,
Ketan Maheshwari <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:ketancmaheshwari@gmail.com"
target="_blank">ketancmaheshwari@gmail.com</a>></span>
wrote:<br>
</div>
</div>
<blockquote class="gmail_quote"
style="margin: 0pt 0pt 0pt 0.8ex;
border-left: 1px solid rgb(204, 204,
204); padding-left: 1ex;">
<div>
<div>Jon,<br>
<br>
Thanks for trying out catsn on
Beagle. <br>
<br>
I just tried it myself but could
not reproduce the error you are
getting. Have you made the changes
that are mentioned in the README:<br>
==<br>
Change workdir location in
beagle-coaster.xml<br>
Change the project entry in the
beagle-coaster.xml to your project
name<br>
==<br>
<font color="#888888"><br>
Ketan</font> </div>
</div>
<div>
<div><br>
<br>
<div class="gmail_quote">
<div>
<div>On Sat, Jun 4, 2011 at
11:50 AM, Jonathan S Monette
<span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:jonmon@utexas.edu"
target="_blank">jonmon@utexas.edu</a>></span>
wrote:<br>
</div>
</div>
<blockquote class="gmail_quote"
style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid
rgb(204, 204, 204);
padding-left: 1ex;">
<div>
<div>Hello,
<div> I am trying to run
the catsn test on beagle
using the files in
~ketan/catsn. I have
copied over this
directory over to my
home directory and I
believe I set it up
correctly. I did module
load swift and the ran
run.sh that was in this
directory. I get this
error.</div>
<div><br>
</div>
</div>
</div>
<div>
<div>
<div>
<div>/soft/swift/0.92/bin/swift:
eval: line 152: syntax
error near unexpected
token `('</div>
</div>
</div>
<div>/soft/swift/0.92/bin/swift:
eval: line 152: `java
-Xmx8192M
-Djava.endorsed.dirs=/soft/swift/0.92/bin/../lib/endorsed
-DUID=1881
-DGLOBUS_HOSTNAME=login2.beagle.ci.uchicago.edu.(none)
-DCOG_INSTALL_PATH=/soft/swift/0.92/bin/..
-Dswift.home=/soft/swift/0.92/bin/..
-Djava.security.egd=<a
moz-do-not-send="true">file:///dev/urandom</a>
-classpath
/soft/swift/0.92/bin/../etc:/soft/swift/0.92/bin/../libexec:/soft/swift/0.92/bin/../lib/addressing-1.0.jar:/soft/swift/0.92/bin/../lib/ant.jar:/soft/swift/0.92/bin/../lib/antlr-2.7.5.jar:/soft/swift/0.92/bin/../lib/axis.jar:/soft/swift/0.92/bin/../lib/axis-url.jar:/soft/swift/0.92/bin/../lib/backport-util-concurrent.jar:/soft/swift/0.92/bin/../lib/castor-0.9.6.jar:/soft/swift/0.92/bin/../lib/coaster-bootstrap.jar:/soft/swift/0.92/bin/../lib/cog-abstraction-common-2.4.jar:/soft/swift/0.92/bin/../lib/cog-axis.jar:/soft/swift/0.92/bin/../lib/cog-grapheditor-0.47.jar:/soft/swift/0.92/bin/../lib/cog-jglobus-1.7.0.jar:/soft/swift/0.92/bin/../lib/cog-karajan-0.36-dev.jar:/soft/swift/0.92/bin/../lib/cog-provider-clref-gt4_0_0.jar:/soft/swift/0.92/bin/../lib/cog-provider-coaster-0.3.jar:/soft/swift/0.92/bin/../lib/cog-provider-dcache-0.1.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt2-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt4_0_0-2.5.jar:/soft/swift/0.92/bin/../lib/cog-pro
vider-local-2.2.jar:/soft/swift/0.92/bin/../lib/cog-provider-localscheduler-0.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-ssh-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-webdav-2.1.jar:/soft/swift/0.92/bin/../lib/cog-resources-1.0.jar:/soft/swift/0.92/bin/../lib/cog-swift-svn.jar:/soft/swift/0.92/bin/../lib/cog-trap-1.0.jar:/soft/swift/0.92/bin/../lib/cog-url.jar:/soft/swift/0.92/bin/../lib/cog-util-0.92.jar:/soft/swift/0.92/bin/../lib/commonj.jar:/soft/swift/0.92/bin/../lib/commons-beanutils.jar:/soft/swift/0.92/bin/../lib/commons-collections-3.0.jar:/soft/swift/0.92/bin/../lib/commons-digester.jar:/soft/swift/0.92/bin/../lib/commons-discovery.jar:/soft/swift/0.92/bin/../lib/commons-httpclient.jar:/soft/swift/0.92/bin/../lib/commons-logging-1.1.jar:/soft/swift/0.92/bin/../lib/concurrent.jar:/soft/swift/0.92/bin/../lib/cryptix32.jar:/soft/swift/0.92/bin/../lib/cryptix-asn1.jar:/soft/swift/0.92/bin/../lib/cryptix.jar:/soft/swift/0.92/bin/../lib/globus_delegation_servic
e.jar:/soft/swift/0.92/bin/../lib/globus_delegation_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_mds_aggregator_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_service.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rft_stubs.jar:/soft/swift/0.92/bin/../lib/gram-client.jar:/soft/swift/0.92/bin/../lib/gram-stubs.jar:/soft/swift/0.92/bin/../lib/gram-utils.jar:/soft/swift/0.92/bin/../lib/j2ssh-common-0.2.2.jar:/soft/swift/0.92/bin/../lib/j2ssh-core-0.2.2-patch-b.jar:/soft/swift/0.92/bin/../lib/jakarta-regexp-1.2.jar:/soft/swift/0.92/bin/../lib/jakarta-slide-webdavlib-2.0.jar:/soft/swift/0.92/bin/../lib/jaxrpc.jar:/soft/swift/0.92/bin/../lib/jce-jdk13-131.jar:/soft/swift/0.92/bin/../lib/jgss.jar:/soft/swift/0.92/bin/../lib/jline-0.9.94.jar:/soft/swift/0.92/bin/../lib/jsr173_1.0_api.jar:/soft/swift/0.92/bin/../lib/jug-lgpl-2.0.0.jar:/soft/swift/0.92/bin/../lib/junit.jar:/soft/swift/0.92/bin/../lib/log4j-1.2
.8.jar:/soft/swift/0.92/bin/../lib/naming-common.jar:/soft/swift/0.92/bin/../lib/naming-factory.jar:/soft/swift/0.92/bin/../lib/naming-java.jar:/soft/swift/0.92/bin/../lib/naming-resources.jar:/soft/swift/0.92/bin/../lib/opensaml.jar:/soft/swift/0.92/bin/../lib/puretls.jar:/soft/swift/0.92/bin/../lib/resolver.jar:/soft/swift/0.92/bin/../lib/saaj.jar:/soft/swift/0.92/bin/../lib/stringtemplate.jar:/soft/swift/0.92/bin/../lib/vdldefinitions.jar:/soft/swift/0.92/bin/../lib/wsdl4j.jar:/soft/swift/0.92/bin/../lib/wsrf_core.jar:/soft/swift/0.92/bin/../lib/wsrf_core_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_index_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_usefulrp_schema_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_provider_jce.jar:/soft/swift/0.92/bin/../lib/wsrf_tools.jar:/soft/swift/0.92/bin/../lib/wss4j.jar:/soft/swift/0.92/bin/../lib/xalan.jar:/soft/swift/0.92/bin/../lib/xbean.jar:/soft/swift/0.92/bin/../lib/xbean_xpath.jar:/soft/swift/0.92/bin/../lib/xercesImpl.jar:/soft
/swift/0.92/bin/../lib/xml-apis.jar:/soft/swift/0.92/bin/../lib/xmlsec.jar:/soft/swift/0.92/bin/../lib/xpp3-1.1.3.4d_b4_min.jar:/soft/swift/0.92/bin/../lib/xstream-1.1.1-patched.jar:
org.griphyn.vdl.karajan.Loader
'-config' 'cf' '-tc.file'
'tc' '-sites.file'
'beagle-coaster.xml'
'catsn.swift' '-n=1''</div>
<div>
<div><br>
</div>
<div>I there something
else I need to load on
beagle to make swift run
accordingly?</div>
<br>
-- <br>
<p>Any intelligent fool
can make things bigger
and more complex... It
takes a touch of genius
- and a lot of courage
to move in the opposite
direction.</p>
<p>- Albert Einstein</p>
<br>
</div>
</div>
</blockquote>
</div>
<br>
</div>
</div>
</blockquote>
</div>
<div> <br>
<br clear="all">
<br>
-- <br>
<p>Any intelligent fool can make things
bigger and more complex... It takes a
touch of genius - and a lot of courage
to move in the opposite direction.</p>
<p>- Albert Einstein</p>
<br>
</div>
</div>
</blockquote>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<br>
-- <br>
<p>Any intelligent fool can make things bigger and
more complex... It takes a touch of genius - and a
lot of courage to move in the opposite direction.</p>
<p>- Albert Einstein</p>
<br>
</div>
</blockquote>
</div>
</div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<br>
-- <br>
<p>Any intelligent fool can make things bigger and more complex...
It takes a touch of genius - and a lot of courage to move in the
opposite direction.</p>
<p>- Albert Einstein</p>
<br>
</blockquote>
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