2011-03-28 10:53:57,425-0600 DEBUG Loader Max heap: 6291456000 2011-03-28 10:53:57,495-0600 DEBUG Loader kmlversion is >aef21222-fd63-4d3b-86cd-0e733c76b425< 2011-03-28 10:53:57,495-0600 DEBUG Loader build version is >c20a6f00-213e-46c6-b711-2fc11ebda9bd< 2011-03-28 10:53:57,495-0600 INFO Loader ftdock.swift: source file was compiled with a different version of Swift. Recompiling. 2011-03-28 10:53:58,563-0600 INFO Karajan Validation of XML intermediate file was successful 2011-03-28 10:53:59,131-0600 INFO VDL2ExecutionContext Stack dump: Level 1 [iA = 0, iB = 0, bA = false, bB = false] vdl:instanceconfig = Swift configuration [cf] swift.home = /home/ketan/cog/modules/swift/dist/swift-svn #vdl:futureWrapperMap = org.griphyn.vdl.karajan.WrapperMap@21112111 PATH_SEPARATOR = / vdl:operation = run vdl:instanceconfigfile = cf 2011-03-28 10:53:59,643-0600 INFO unknown Using sites file: beagle-coaster.xml 2011-03-28 10:53:59,757-0600 INFO unknown Using tc.data: tc 2011-03-28 10:53:59,865-0600 INFO AbstractScheduler Setting resources to: {pbs=pbs} 2011-03-28 10:54:00,174-0600 INFO unknown Swift svn swift-r4225 cog-r3078 2011-03-28 10:54:00,178-0600 INFO unknown RUNID id=run:20110328-1053-5q1fu8re 2011-03-28 10:54:00,210-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000001 path=$ 2011-03-28 10:54:00,211-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000001 VALUE=.pdb 2011-03-28 10:54:00,211-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000002 path=$ 2011-03-28 10:54:00,211-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000002 VALUE=output 2011-03-28 10:54:00,212-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000003 path=$ 2011-03-28 10:54:00,212-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000003 VALUE=-modulo 2011-03-28 10:54:00,212-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000004 path=$ 2011-03-28 10:54:00,212-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000004 VALUE=input/ 2011-03-28 10:54:00,212-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000005 path=$ 2011-03-28 10:54:00,213-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000005 VALUE=-angle_step 2011-03-28 10:54:00,213-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000006 path=$ 2011-03-28 10:54:00,213-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000006 VALUE=grid 2011-03-28 10:54:00,213-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000007 path=$ 2011-03-28 10:54:00,213-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000007 VALUE=.dat 2011-03-28 10:54:00,214-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000008 path=$ 2011-03-28 10:54:00,214-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000008 VALUE=-calculate_grid 2011-03-28 10:54:00,214-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000009 path=$ 2011-03-28 10:54:00,214-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000009 VALUE=m 2011-03-28 10:54:00,214-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000010 path=$ 2011-03-28 10:54:00,214-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000010 VALUE=n 2011-03-28 10:54:00,215-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000011 path=$ 2011-03-28 10:54:00,215-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000011 VALUE=-root 2011-03-28 10:54:00,215-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000012 path=$ 2011-03-28 10:54:00,215-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000012 VALUE=-mobile 2011-03-28 10:54:00,215-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000013 path=$ 2011-03-28 10:54:00,215-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000013 VALUE=1 2011-03-28 10:54:00,216-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000014 path=$ 2011-03-28 10:54:00,216-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000014 VALUE=100 2011-03-28 10:54:00,216-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000015 path=$ 2011-03-28 10:54:00,216-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000015 VALUE=-keep 2011-03-28 10:54:00,216-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000016 path=$ 2011-03-28 10:54:00,216-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000016 VALUE=-noelec 2011-03-28 10:54:00,217-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000017 path=$ 2011-03-28 10:54:00,217-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000017 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,217-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000018 path=$ 2011-03-28 10:54:00,217-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000018 VALUE=2.5 2011-03-28 10:54:00,217-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000019 path=$ 2011-03-28 10:54:00,218-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000019 VALUE=: 2011-03-28 10:54:00,218-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000020 path=$ 2011-03-28 10:54:00,218-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000020 VALUE=-static 2011-03-28 10:54:00,218-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000021 path=$ 2011-03-28 10:54:00,218-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000021 VALUE=list 2011-03-28 10:54:00,218-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000022 path=$ 2011-03-28 10:54:00,219-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000022 VALUE=_ 2011-03-28 10:54:00,219-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000023 path=$ 2011-03-28 10:54:00,219-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000023 VALUE=10 2011-03-28 10:54:00,219-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000024 path=$ 2011-03-28 10:54:00,219-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000024 VALUE=0 2011-03-28 10:54:00,220-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000025 path=$ 2011-03-28 10:54:00,220-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000025 VALUE=32 2011-03-28 10:54:00,220-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000026 path=$ 2011-03-28 10:54:00,220-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000026 VALUE=1 2011-03-28 10:54:00,220-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000027 path=$ 2011-03-28 10:54:00,221-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000027 VALUE=3 2011-03-28 10:54:00,221-0600 INFO vdl:parameterlog PARAM thread=0 direction=intermediate variable=modulus provenanceid=dataset:20110328-1054-02i6xslf:720000000028 2011-03-28 10:54:00,232-0600 INFO vdl:parameterlog PARAM thread=0 direction=intermediate variable=str_roots provenanceid=dataset:20110328-1054-02i6xslf:720000000029 2011-03-28 10:54:00,276-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000030 path=$ 2011-03-28 10:54:00,276-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000030 VALUE=100 2011-03-28 10:54:00,276-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000031 path=$ 2011-03-28 10:54:00,276-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,276-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000031 VALUE=pdb.list 2011-03-28 10:54:00,277-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,277-0600 INFO vdl:parameterlog PARAM thread=0-1 direction=output variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000029 2011-03-28 10:54:00,277-0600 INFO vdl:parameterlog PARAM thread=0-1 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000031 2011-03-28 10:54:00,277-0600 INFO SetFieldValue Set: modulus=100 2011-03-28 10:54:00,278-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000028 path=$ 2011-03-28 10:54:00,278-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000028 VALUE=100 2011-03-28 10:54:00,278-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000032 path=[0] 2011-03-28 10:54:00,278-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000032 VALUE=1j55-1 2011-03-28 10:54:00,278-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000033 path=[1] 2011-03-28 10:54:00,279-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000033 VALUE=1jmt-1 2011-03-28 10:54:00,279-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000034 path=[2] 2011-03-28 10:54:00,279-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000034 VALUE=1wf0-1 2011-03-28 10:54:00,279-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000035 path=[3] 2011-03-28 10:54:00,279-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000035 VALUE=1wxp-1 2011-03-28 10:54:00,279-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000036 path=[4] 2011-03-28 10:54:00,279-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000036 VALUE=1y4m-1 2011-03-28 10:54:00,280-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000037 path=[5] 2011-03-28 10:54:00,280-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000037 VALUE=1y4m-2 2011-03-28 10:54:00,280-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000038 path=[6] 2011-03-28 10:54:00,280-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000038 VALUE=2day-1 2011-03-28 10:54:00,280-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000039 path=[7] 2011-03-28 10:54:00,280-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000039 VALUE=2dhy-1 2011-03-28 10:54:00,280-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000040 path=[8] 2011-03-28 10:54:00,281-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000040 VALUE=2e5p-1 2011-03-28 10:54:00,281-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000041 path=[9] 2011-03-28 10:54:00,281-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000041 VALUE=2eaq-1 2011-03-28 10:54:00,282-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000029 path=$ 2011-03-28 10:54:00,282-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000032 2011-03-28 10:54:00,282-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000032 path=[0] 2011-03-28 10:54:00,282-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000032 VALUE=1j55-1 2011-03-28 10:54:00,282-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000033 2011-03-28 10:54:00,282-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000033 path=[1] 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000033 VALUE=1jmt-1 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000034 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000034 path=[2] 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000034 VALUE=1wf0-1 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000035 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000035 path=[3] 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000035 VALUE=1wxp-1 2011-03-28 10:54:00,283-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000036 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000036 path=[4] 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000036 VALUE=1y4m-1 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000037 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000037 path=[5] 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000037 VALUE=1y4m-2 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000038 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000038 path=[6] 2011-03-28 10:54:00,284-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000042 2011-03-28 10:54:00,285-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000047 2011-03-28 10:54:00,284-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000038 VALUE=2day-1 2011-03-28 10:54:00,284-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000050 2011-03-28 10:54:00,285-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000053 2011-03-28 10:54:00,284-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000048 2011-03-28 10:54:00,286-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000049 2011-03-28 10:54:00,285-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000046 2011-03-28 10:54:00,286-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000055 2011-03-28 10:54:00,285-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000052 2011-03-28 10:54:00,285-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000051 2011-03-28 10:54:00,286-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000054 2011-03-28 10:54:00,287-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000059 2011-03-28 10:54:00,284-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000045 2011-03-28 10:54:00,287-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000062 2011-03-28 10:54:00,287-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000061 2011-03-28 10:54:00,284-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000043 2011-03-28 10:54:00,286-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000057 2011-03-28 10:54:00,286-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000058 2011-03-28 10:54:00,288-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000064 2011-03-28 10:54:00,287-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000063 2011-03-28 10:54:00,289-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000068 2011-03-28 10:54:00,286-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000056 2011-03-28 10:54:00,289-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000069 2011-03-28 10:54:00,285-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000039 2011-03-28 10:54:00,290-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000039 path=[7] 2011-03-28 10:54:00,290-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000073 2011-03-28 10:54:00,289-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000065 2011-03-28 10:54:00,289-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000070 2011-03-28 10:54:00,290-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000039 VALUE=2dhy-1 2011-03-28 10:54:00,289-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000067 2011-03-28 10:54:00,291-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000075 2011-03-28 10:54:00,291-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000077 2011-03-28 10:54:00,290-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000072 2011-03-28 10:54:00,287-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000060 2011-03-28 10:54:00,291-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000076 2011-03-28 10:54:00,292-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000081 2011-03-28 10:54:00,292-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000080 2011-03-28 10:54:00,291-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000040 2011-03-28 10:54:00,289-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000071 2011-03-28 10:54:00,292-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000079 2011-03-28 10:54:00,293-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000085 2011-03-28 10:54:00,293-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000083 2011-03-28 10:54:00,293-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000084 2011-03-28 10:54:00,293-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000040 path=[8] 2011-03-28 10:54:00,291-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000078 2011-03-28 10:54:00,290-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000074 2011-03-28 10:54:00,294-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000090 2011-03-28 10:54:00,294-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000089 path=$ 2011-03-28 10:54:00,294-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000092 2011-03-28 10:54:00,295-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000093 2011-03-28 10:54:00,295-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000089 VALUE=output 2011-03-28 10:54:00,295-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000094 2011-03-28 10:54:00,295-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000095 2011-03-28 10:54:00,293-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000087 2011-03-28 10:54:00,296-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000096 2011-03-28 10:54:00,296-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000098 2011-03-28 10:54:00,292-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000082 2011-03-28 10:54:00,296-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000100 2011-03-28 10:54:00,294-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000088 2011-03-28 10:54:00,296-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000102 2011-03-28 10:54:00,297-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000103 path=$ 2011-03-28 10:54:00,297-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000104 2011-03-28 10:54:00,297-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000105 2011-03-28 10:54:00,296-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000101 2011-03-28 10:54:00,297-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000106 path=$ 2011-03-28 10:54:00,294-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000091 2011-03-28 10:54:00,296-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000099 2011-03-28 10:54:00,285-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=str_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000044 2011-03-28 10:54:00,297-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000103 VALUE=output 2011-03-28 10:54:00,298-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000108 path=$ 2011-03-28 10:54:00,299-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000111 2011-03-28 10:54:00,299-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000112 path=$ 2011-03-28 10:54:00,298-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000106 VALUE=output 2011-03-28 10:54:00,299-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000112 VALUE=.dat 2011-03-28 10:54:00,299-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000108 VALUE=output 2011-03-28 10:54:00,298-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000110 2011-03-28 10:54:00,298-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000107 path=$ 2011-03-28 10:54:00,300-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000113 2011-03-28 10:54:00,293-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000086 2011-03-28 10:54:00,300-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000107 VALUE=output 2011-03-28 10:54:00,300-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000115 2011-03-28 10:54:00,301-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000117 2011-03-28 10:54:00,298-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000109 2011-03-28 10:54:00,302-0600 INFO vdl:parameterlog PARAM thread=0-2-4 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000120 2011-03-28 10:54:00,302-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000122 path=$ 2011-03-28 10:54:00,300-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000116 2011-03-28 10:54:00,302-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000121 path=$ 2011-03-28 10:54:00,302-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000121 VALUE=output 2011-03-28 10:54:00,302-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,302-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,303-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,302-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000122 VALUE=.dat 2011-03-28 10:54:00,303-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000092 path=$ 2011-03-28 10:54:00,303-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000100 path=$ 2011-03-28 10:54:00,300-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000114 path=$ 2011-03-28 10:54:00,301-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000118 2011-03-28 10:54:00,304-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000114 VALUE=.dat 2011-03-28 10:54:00,303-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000094 path=$ 2011-03-28 10:54:00,303-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,301-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000119 path=$ 2011-03-28 10:54:00,294-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000040 VALUE=2e5p-1 2011-03-28 10:54:00,295-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000097 path=$ 2011-03-28 10:54:00,304-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000100 VALUE=.dat 2011-03-28 10:54:00,305-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000126 path=$ 2011-03-28 10:54:00,302-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000123 2011-03-28 10:54:00,305-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000126 VALUE=1 2011-03-28 10:54:00,304-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000094 VALUE=output 2011-03-28 10:54:00,303-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000092 VALUE=3 2011-03-28 10:54:00,306-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,288-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=str_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000066 2011-03-28 10:54:00,306-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000128 path=$ 2011-03-28 10:54:00,307-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000125 2011-03-28 10:54:00,307-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000129 path=$ 2011-03-28 10:54:00,307-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000128 VALUE=1 2011-03-28 10:54:00,307-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000127 2011-03-28 10:54:00,307-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000129 VALUE=.dat 2011-03-28 10:54:00,305-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000119 VALUE=.dat 2011-03-28 10:54:00,305-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000097 VALUE=.dat 2011-03-28 10:54:00,306-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000124 2011-03-28 10:54:00,308-0600 INFO vdl:parameterlog PARAM thread=0-2-4-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000036 2011-03-28 10:54:00,307-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,308-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000134 2011-03-28 10:54:00,308-0600 INFO vdl:parameterlog PARAM thread=0-2-6 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000133 2011-03-28 10:54:00,305-0600 INFO AbstractDataNode CONTAINMENT parent=dataset:20110328-1054-02i6xslf:720000000029 child=dataset:20110328-1054-02i6xslf:720000000041 2011-03-28 10:54:00,309-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000074 path=$ 2011-03-28 10:54:00,308-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000135 2011-03-28 10:54:00,309-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000074 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,309-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000041 path=[9] 2011-03-28 10:54:00,310-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000058 path=$ 2011-03-28 10:54:00,309-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,308-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000132 2011-03-28 10:54:00,310-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000076 path=$ 2011-03-28 10:54:00,310-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,310-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000076 VALUE=3 2011-03-28 10:54:00,311-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000082 path=$ 2011-03-28 10:54:00,311-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,311-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000082 VALUE=output 2011-03-28 10:54:00,311-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000105 path=$ 2011-03-28 10:54:00,311-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000137 2011-03-28 10:54:00,309-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000136 2011-03-28 10:54:00,312-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,309-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000138 path=$ 2011-03-28 10:54:00,308-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,312-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000065 path=$ 2011-03-28 10:54:00,310-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000041 VALUE=2eaq-1 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000065 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,307-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000131 path=$ 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000120 path=$ 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000055 path=$ 2011-03-28 10:54:00,313-0600 WARN trace SwiftScript trace: 1y4m-1 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000142 path=$ 2011-03-28 10:54:00,312-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000138 VALUE=output 2011-03-28 10:54:00,314-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000055 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,311-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000105 VALUE=.dat 2011-03-28 10:54:00,314-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000147 path=$ 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000143 path=$ 2011-03-28 10:54:00,315-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000147 VALUE=1 2011-03-28 10:54:00,315-0600 INFO vdl:parameterlog PARAM thread=0-2-8 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000144 2011-03-28 10:54:00,315-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,315-0600 INFO vdl:parameterlog PARAM thread=0-2-6-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000038 2011-03-28 10:54:00,316-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000148 path=$ 2011-03-28 10:54:00,315-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000143 VALUE=1y4m-1_ 2011-03-28 10:54:00,308-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000130 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000131 VALUE=output 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000120 VALUE=1 2011-03-28 10:54:00,316-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,315-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000140 2011-03-28 10:54:00,314-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000146 path=$ 2011-03-28 10:54:00,317-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000152 path=$ 2011-03-28 10:54:00,317-0600 INFO vdl:parameterlog PARAM thread=0-2-5 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000139 2011-03-28 10:54:00,316-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000148 VALUE=1 2011-03-28 10:54:00,318-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,318-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,318-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000077 path=$ 2011-03-28 10:54:00,318-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,318-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000077 VALUE=output 2011-03-28 10:54:00,319-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000133 path=$ 2011-03-28 10:54:00,319-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,316-0600 INFO vdl:parameterlog PARAM thread=0-2-9 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000145 2011-03-28 10:54:00,310-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000058 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,319-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000133 VALUE=1 2011-03-28 10:54:00,313-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000141 path=$ 2011-03-28 10:54:00,320-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000141 VALUE=input/1y4m-1.pdb 2011-03-28 10:54:00,320-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,320-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000154 path=$ 2011-03-28 10:54:00,319-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000085 path=$ 2011-03-28 10:54:00,319-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,320-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000155 path=$ 2011-03-28 10:54:00,321-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000155 VALUE=0 2011-03-28 10:54:00,317-0600 WARN trace SwiftScript trace: 2day-1 2011-03-28 10:54:00,317-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000152 VALUE=.dat 2011-03-28 10:54:00,317-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,317-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000146 VALUE=input/2day-1.pdb 2011-03-28 10:54:00,321-0600 INFO operators OPERATOR thread=0-2-6-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000133 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000155 2011-03-28 10:54:00,321-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000064 path=$ 2011-03-28 10:54:00,320-0600 INFO SetFieldValue Set: str_file_static=input/1y4m-1.pdb 2011-03-28 10:54:00,322-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000070 path=$ 2011-03-28 10:54:00,317-0600 INFO SetFieldValue Set: swift#mapper#17020=1y4m-1_ 2011-03-28 10:54:00,322-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000070 VALUE=3 2011-03-28 10:54:00,322-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000064 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,323-0600 INFO vdl:parameterlog PARAM thread=0-2-7 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000151 2011-03-28 10:54:00,323-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000054 path=$ 2011-03-28 10:54:00,323-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000096 path=$ 2011-03-28 10:54:00,317-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000150 path=$ 2011-03-28 10:54:00,324-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000096 VALUE=1y4m-1_ 2011-03-28 10:54:00,324-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000150 VALUE=0 2011-03-28 10:54:00,322-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,323-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000158 path=$ 2011-03-28 10:54:00,324-0600 INFO SetFieldValue Set: str_file_static=input/2day-1.pdb 2011-03-28 10:54:00,324-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000158 VALUE=.dat 2011-03-28 10:54:00,323-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000054 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,322-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000157 path=$ 2011-03-28 10:54:00,325-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000069 path=$ 2011-03-28 10:54:00,325-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,325-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,325-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000075 path=$ 2011-03-28 10:54:00,326-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000117 path=$ 2011-03-28 10:54:00,326-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000075 VALUE=3 2011-03-28 10:54:00,326-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000117 VALUE=.dat 2011-03-28 10:54:00,320-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000085 VALUE=.dat 2011-03-28 10:54:00,325-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,325-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000069 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,322-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000156 path=$ 2011-03-28 10:54:00,326-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,324-0600 INFO operators OPERATOR thread=0-2-4-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000120 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000150 2011-03-28 10:54:00,327-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000079 path=$ 2011-03-28 10:54:00,326-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,327-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000156 VALUE=input/2e5p-1.pdb 2011-03-28 10:54:00,328-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000095 path=$ 2011-03-28 10:54:00,328-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,328-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000095 VALUE=output 2011-03-28 10:54:00,328-0600 INFO SetFieldValue Set: str_file_static=input/2e5p-1.pdb 2011-03-28 10:54:00,327-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,327-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000079 VALUE=output 2011-03-28 10:54:00,329-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,329-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000153 2011-03-28 10:54:00,329-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000101 path=$ 2011-03-28 10:54:00,327-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000046 path=$ 2011-03-28 10:54:00,327-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,327-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000093 path=$ 2011-03-28 10:54:00,330-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000073 path=$ 2011-03-28 10:54:00,330-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000093 VALUE=3 2011-03-28 10:54:00,329-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000090 path=$ 2011-03-28 10:54:00,329-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000159 path=$ 2011-03-28 10:54:00,320-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000154 VALUE=2e5p-1_ 2011-03-28 10:54:00,330-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000159 VALUE=1y4m-2_ 2011-03-28 10:54:00,329-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000046 VALUE=input/1y4m-1.pdb 2011-03-28 10:54:00,331-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,330-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000073 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,331-0600 INFO SetFieldValue Set: swift#mapper#17020=1y4m-2_ 2011-03-28 10:54:00,331-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000053 path=$ 2011-03-28 10:54:00,331-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000086 path=$ 2011-03-28 10:54:00,331-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000053 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,331-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000086 VALUE=1y4m-2_ 2011-03-28 10:54:00,332-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000161 path=$ 2011-03-28 10:54:00,314-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000142 VALUE=2day-1_ 2011-03-28 10:54:00,332-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000164 path=$ 2011-03-28 10:54:00,332-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000059 path=$ 2011-03-28 10:54:00,332-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000164 VALUE=input/2eaq-1.pdb 2011-03-28 10:54:00,329-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000101 VALUE=.dat 2011-03-28 10:54:00,332-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,333-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000165 path=$ 2011-03-28 10:54:00,333-0600 INFO SetFieldValue Set: str_file_static=input/2eaq-1.pdb 2011-03-28 10:54:00,333-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000165 VALUE=1 2011-03-28 10:54:00,330-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,325-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000157 VALUE=1 2011-03-28 10:54:00,332-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000161 VALUE=input/1y4m-2.pdb 2011-03-28 10:54:00,332-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000163 path=$ 2011-03-28 10:54:00,334-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,334-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000163 VALUE=1 2011-03-28 10:54:00,334-0600 INFO SetFieldValue Set: str_file_static=input/1y4m-2.pdb 2011-03-28 10:54:00,334-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,321-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000149 2011-03-28 10:54:00,334-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000166 path=$ 2011-03-28 10:54:00,335-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000166 VALUE=1 2011-03-28 10:54:00,333-0600 INFO SetFieldValue Set: swift#mapper#17020=2e5p-1_ 2011-03-28 10:54:00,335-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,335-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000080 path=$ 2011-03-28 10:54:00,335-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,335-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000080 VALUE=2e5p-1_ 2011-03-28 10:54:00,335-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000139 path=$ 2011-03-28 10:54:00,336-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000139 VALUE=1 2011-03-28 10:54:00,335-0600 INFO vdl:parameterlog PARAM thread=0-2-8-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000040 2011-03-28 10:54:00,336-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,330-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000090 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,332-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000059 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,336-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000060 path=$ 2011-03-28 10:54:00,333-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,336-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000060 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,336-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000062 path=$ 2011-03-28 10:54:00,337-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,337-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000062 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,337-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000104 path=$ 2011-03-28 10:54:00,337-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000050 path=$ 2011-03-28 10:54:00,336-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000167 path=$ 2011-03-28 10:54:00,337-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000168 path=$ 2011-03-28 10:54:00,337-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000104 VALUE=.dat 2011-03-28 10:54:00,338-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000050 VALUE=input/2e5p-1.pdb 2011-03-28 10:54:00,336-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000048 path=$ 2011-03-28 10:54:00,338-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000167 VALUE=0 2011-03-28 10:54:00,336-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,339-0600 WARN trace SwiftScript trace: 2e5p-1 2011-03-28 10:54:00,338-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,338-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000048 VALUE=input/2day-1.pdb 2011-03-28 10:54:00,338-0600 INFO operators OPERATOR thread=0-2-5-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000139 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000167 2011-03-28 10:54:00,339-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000083 path=$ 2011-03-28 10:54:00,336-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000081 path=$ 2011-03-28 10:54:00,339-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000072 path=$ 2011-03-28 10:54:00,339-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000172 path=$ 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000174 path=$ 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000172 VALUE=2dhy-1_ 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000175 path=$ 2011-03-28 10:54:00,338-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000168 VALUE=1 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000174 VALUE=input/2dhy-1.pdb 2011-03-28 10:54:00,340-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,341-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000056 path=$ 2011-03-28 10:54:00,341-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000175 VALUE=1 2011-03-28 10:54:00,341-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000145 path=$ 2011-03-28 10:54:00,341-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,341-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000145 VALUE=1 2011-03-28 10:54:00,341-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000056 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,340-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,342-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000176 path=$ 2011-03-28 10:54:00,330-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000160 path=$ 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000081 VALUE=3 2011-03-28 10:54:00,342-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000177 path=$ 2011-03-28 10:54:00,343-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000177 VALUE=0 2011-03-28 10:54:00,342-0600 INFO SetFieldValue Set: swift#mapper#17020=2dhy-1_ 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000084 path=$ 2011-03-28 10:54:00,343-0600 INFO operators OPERATOR thread=0-2-9-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000145 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000177 2011-03-28 10:54:00,343-0600 INFO vdl:parameterlog PARAM thread=0-2-5-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000037 2011-03-28 10:54:00,342-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000176 VALUE=1 2011-03-28 10:54:00,343-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000084 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,344-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,340-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000072 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,341-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,344-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000057 path=$ 2011-03-28 10:54:00,344-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,344-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000057 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,343-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000088 path=$ 2011-03-28 10:54:00,334-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,332-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,345-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000151 path=$ 2011-03-28 10:54:00,345-0600 WARN trace SwiftScript trace: 1y4m-2 2011-03-28 10:54:00,345-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000088 VALUE=2dhy-1_ 2011-03-28 10:54:00,345-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000151 VALUE=1 2011-03-28 10:54:00,345-0600 INFO SetFieldValue Set: swift#mapper#17020=2day-1_ 2011-03-28 10:54:00,346-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000169 2011-03-28 10:54:00,346-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000181 path=$ 2011-03-28 10:54:00,344-0600 INFO SetFieldValue Set: str_file_static=input/2dhy-1.pdb 2011-03-28 10:54:00,342-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000047 path=$ 2011-03-28 10:54:00,345-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000179 path=$ 2011-03-28 10:54:00,343-0600 INFO vdl:parameterlog PARAM thread=0-2-9-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000041 2011-03-28 10:54:00,346-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=swift#mapper#17017 provenanceid=dataset:20110328-1054-02i6xslf:720000000171 2011-03-28 10:54:00,342-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000160 VALUE=2eaq-1_ 2011-03-28 10:54:00,347-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000173 2011-03-28 10:54:00,347-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,346-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000102 path=$ 2011-03-28 10:54:00,348-0600 INFO vdl:mains ARRAYRANGE thread=0-2-6-8 array=dataset:20110328-1054-02i6xslf:720000000162 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000155 step=none 2011-03-28 10:54:00,348-0600 WARN trace SwiftScript trace: 2eaq-1 2011-03-28 10:54:00,347-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000179 VALUE=1 2011-03-28 10:54:00,348-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000102 VALUE=2day-1_ 2011-03-28 10:54:00,348-0600 INFO vdl:mains ARRAYRANGE thread=0-2-4-8 array=dataset:20110328-1054-02i6xslf:720000000170 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000150 step=none 2011-03-28 10:54:00,346-0600 INFO vdl:parameterlog PARAM thread=0-2-7-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000039 2011-03-28 10:54:00,347-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000068 path=$ 2011-03-28 10:54:00,349-0600 WARN trace SwiftScript trace: 2dhy-1 2011-03-28 10:54:00,346-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000047 VALUE=input/1y4m-2.pdb 2011-03-28 10:54:00,349-0600 INFO vdl:parameterlog PARAM thread=0-2-3 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000182 2011-03-28 10:54:00,339-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000083 VALUE=output 2011-03-28 10:54:00,348-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,343-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000178 path=$ 2011-03-28 10:54:00,350-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,346-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000181 VALUE=0 2011-03-28 10:54:00,350-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000144 path=$ 2011-03-28 10:54:00,350-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=swift#mapper#17018 provenanceid=dataset:20110328-1054-02i6xslf:720000000184 2011-03-28 10:54:00,350-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000144 VALUE=1 2011-03-28 10:54:00,350-0600 INFO vdl:parameterlog PARAM thread=0-2-0 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000185 2011-03-28 10:54:00,351-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000186 path=$ 2011-03-28 10:54:00,351-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000186 VALUE=0 2011-03-28 10:54:00,351-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,351-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,350-0600 INFO operators OPERATOR thread=0-2-7-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000151 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000181 2011-03-28 10:54:00,351-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000110 path=$ 2011-03-28 10:54:00,351-0600 INFO operators OPERATOR thread=0-2-8-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000144 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000186 2011-03-28 10:54:00,351-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000110 VALUE=output 2011-03-28 10:54:00,344-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000051 path=$ 2011-03-28 10:54:00,352-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,352-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000188 path=$ 2011-03-28 10:54:00,351-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000099 path=$ 2011-03-28 10:54:00,352-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000188 VALUE=1wxp-1_ 2011-03-28 10:54:00,351-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,352-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,352-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000099 VALUE=3 2011-03-28 10:54:00,352-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000087 path=$ 2011-03-28 10:54:00,350-0600 INFO vdl:mains ARRAYRANGE thread=0-2-9-8 array=dataset:20110328-1054-02i6xslf:720000000183 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000177 step=none 2011-03-28 10:54:00,353-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000087 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,353-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,353-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000063 path=$ 2011-03-28 10:54:00,348-0600 INFO SetFieldValue Set: swift#mapper#17020=2eaq-1_ 2011-03-28 10:54:00,350-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000178 VALUE=output 2011-03-28 10:54:00,353-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000063 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,352-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000051 VALUE=input/2eaq-1.pdb 2011-03-28 10:54:00,354-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,354-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,354-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000091 path=$ 2011-03-28 10:54:00,354-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000123 path=$ 2011-03-28 10:54:00,354-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000091 VALUE=output 2011-03-28 10:54:00,354-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000123 VALUE=.dat 2011-03-28 10:54:00,349-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000068 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,355-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,353-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000078 path=$ 2011-03-28 10:54:00,355-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000078 VALUE=3 2011-03-28 10:54:00,355-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000067 path=$ 2011-03-28 10:54:00,355-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000067 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,355-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000052 path=$ 2011-03-28 10:54:00,355-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000052 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,355-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=swift#mapper#17020 provenanceid=dataset:20110328-1054-02i6xslf:720000000187 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000193 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000193 VALUE=0 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000194 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000195 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000197 path=$ 2011-03-28 10:54:00,353-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000124 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000196 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000124 VALUE=.dat 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000197 VALUE=0 2011-03-28 10:54:00,355-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000049 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000195 VALUE=1j55-1_ 2011-03-28 10:54:00,353-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000098 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000194 VALUE=input/1j55-1.pdb 2011-03-28 10:54:00,357-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000199 path=$ 2011-03-28 10:54:00,357-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,357-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000199 VALUE=1 2011-03-28 10:54:00,357-0600 INFO SetFieldValue Set: str_file_static=input/1j55-1.pdb 2011-03-28 10:54:00,358-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,357-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,358-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000200 path=$ 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000183 path=$ 2011-03-28 10:54:00,358-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000061 path=$ 2011-03-28 10:54:00,357-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000049 VALUE=input/2dhy-1.pdb 2011-03-28 10:54:00,358-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000061 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,359-0600 INFO vdl:parameterlog PARAM thread=0-2-3-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000035 2011-03-28 10:54:00,359-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000042 path=$ 2011-03-28 10:54:00,357-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000098 VALUE=2eaq-1_ 2011-03-28 10:54:00,359-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000042 VALUE=input/1j55-1.pdb 2011-03-28 10:54:00,356-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000196 VALUE=0 2011-03-28 10:54:00,359-0600 WARN trace SwiftScript trace: 1wxp-1 2011-03-28 10:54:00,359-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000201 path=$ 2011-03-28 10:54:00,358-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000200 VALUE=1 2011-03-28 10:54:00,357-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000170 path=$ 2011-03-28 10:54:00,358-0600 INFO SetFieldValue Set: swift#mapper#17020=1j55-1_ 2011-03-28 10:54:00,359-0600 INFO vdl:mains ARRAYRANGE thread=0-2-8-8 array=dataset:20110328-1054-02i6xslf:720000000192 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000186 step=none 2011-03-28 10:54:00,349-0600 INFO vdl:mains ARRAYRANGE thread=0-2-5-8 array=dataset:20110328-1054-02i6xslf:720000000180 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000167 step=none 2011-03-28 10:54:00,359-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000162 path=$ 2011-03-28 10:54:00,360-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000203 path=$ 2011-03-28 10:54:00,359-0600 INFO vdl:mains ARRAYRANGE thread=0-2-7-8 array=dataset:20110328-1054-02i6xslf:720000000191 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000181 step=none 2011-03-28 10:54:00,353-0600 INFO SetFieldValue Set: swift#mapper#17020=1wxp-1_ 2011-03-28 10:54:00,361-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000206 path=$ 2011-03-28 10:54:00,360-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000204 path=$ 2011-03-28 10:54:00,360-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000109 path=$ 2011-03-28 10:54:00,360-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,360-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=swift#mapper#17022 provenanceid=dataset:20110328-1054-02i6xslf:720000000198 2011-03-28 10:54:00,361-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000109 VALUE=1j55-1_ 2011-03-28 10:54:00,360-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000203 VALUE=0 2011-03-28 10:54:00,361-0600 INFO vdl:parameterlog PARAM thread=0-2-4-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000205 2011-03-28 10:54:00,361-0600 INFO vdl:parameterlog PARAM thread=0-2-9-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000202 2011-03-28 10:54:00,362-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000208 path=$ 2011-03-28 10:54:00,361-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000204 VALUE=0 2011-03-28 10:54:00,361-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000206 VALUE=0 2011-03-28 10:54:00,361-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000192 path=$ 2011-03-28 10:54:00,362-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000191 path=$ 2011-03-28 10:54:00,359-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000201 VALUE=.dat 2011-03-28 10:54:00,353-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000189 path=$ 2011-03-28 10:54:00,362-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000189 VALUE=input/1wxp-1.pdb 2011-03-28 10:54:00,363-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,363-0600 INFO SetFieldValue Set: str_file_static=input/1wxp-1.pdb 2011-03-28 10:54:00,362-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000180 path=$ 2011-03-28 10:54:00,362-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000208 VALUE=output 2011-03-28 10:54:00,363-0600 INFO vdl:parameterlog PARAM thread=0-2-8-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000211 2011-03-28 10:54:00,364-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000215 path=$ 2011-03-28 10:54:00,364-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000215 VALUE=.dat 2011-03-28 10:54:00,364-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000217 path=$ 2011-03-28 10:54:00,364-0600 INFO vdl:parameterlog PARAM thread=0-2-9-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000041 2011-03-28 10:54:00,364-0600 INFO vdl:parameterlog PARAM thread=0-2-4-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000036 2011-03-28 10:54:00,361-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,364-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000216 path=$ 2011-03-28 10:54:00,364-0600 INFO vdl:parameterlog PARAM thread=0-2-7-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000212 2011-03-28 10:54:00,362-0600 INFO vdl:parameterlog PARAM thread=0-2-6-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000207 2011-03-28 10:54:00,354-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000190 path=$ 2011-03-28 10:54:00,364-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000217 VALUE=0:100 2011-03-28 10:54:00,364-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000071 path=$ 2011-03-28 10:54:00,365-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000219 path=$ 2011-03-28 10:54:00,365-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000071 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,365-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000219 VALUE=0:100 2011-03-28 10:54:00,365-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000045 path=$ 2011-03-28 10:54:00,365-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,365-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000190 VALUE=1 2011-03-28 10:54:00,365-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,365-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000045 VALUE=input/1wxp-1.pdb 2011-03-28 10:54:00,366-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000211 path=$ 2011-03-28 10:54:00,366-0600 INFO vdl:parameterlog PARAM thread=0-2-9-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000202 2011-03-28 10:54:00,366-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000211 VALUE=0:100 2011-03-28 10:54:00,366-0600 INFO vdl:parameterlog PARAM thread=0-2-4-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000205 2011-03-28 10:54:00,366-0600 INFO vdl:parameterlog PARAM thread=0-2-8-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000040 2011-03-28 10:54:00,359-0600 INFO vdl:parameterlog PARAM thread=0-2-0-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000032 2011-03-28 10:54:00,361-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000116 path=$ 2011-03-28 10:54:00,366-0600 WARN trace SwiftScript trace: 1j55-1 2011-03-28 10:54:00,366-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,364-0600 INFO vdl:parameterlog PARAM thread=0-2-5-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000214 2011-03-28 10:54:00,366-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000116 VALUE=1wxp-1_ 2011-03-28 10:54:00,367-0600 INFO vdl:parameterlog PARAM thread=0-2-7-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000039 2011-03-28 10:54:00,366-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000220 2011-03-28 10:54:00,367-0600 INFO vdl:parameterlog PARAM thread=0-2-9-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000084 2011-03-28 10:54:00,364-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000185 path=$ 2011-03-28 10:54:00,365-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,367-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000185 VALUE=1 2011-03-28 10:54:00,367-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,367-0600 INFO vdl:parameterlog PARAM thread=0-2-8-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000211 2011-03-28 10:54:00,367-0600 INFO vdl:parameterlog PARAM thread=0-2-4-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000069 2011-03-28 10:54:00,368-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000228 path=$ 2011-03-28 10:54:00,368-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000202 path=$ 2011-03-28 10:54:00,367-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000225 path=$ 2011-03-28 10:54:00,368-0600 INFO vdl:parameterlog PARAM thread=0-2-7-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000212 2011-03-28 10:54:00,368-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000229 path=$ 2011-03-28 10:54:00,368-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000228 VALUE=0:100 2011-03-28 10:54:00,368-0600 INFO vdl:parameterlog PARAM thread=0-2-8-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000062 2011-03-28 10:54:00,369-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,366-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000223 path=$ 2011-03-28 10:54:00,369-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,369-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000223 VALUE=0:100 2011-03-28 10:54:00,369-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000214 path=$ 2011-03-28 10:54:00,367-0600 INFO vdl:parameterlog PARAM thread=0-2-6-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000038 2011-03-28 10:54:00,369-0600 INFO vdl:parameterlog PARAM thread=0-2-4-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000074 2011-03-28 10:54:00,369-0600 INFO vdl:parameterlog PARAM thread=0-2-9-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000090 2011-03-28 10:54:00,368-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000202 VALUE=0:100 2011-03-28 10:54:00,369-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000214 VALUE=0:100 2011-03-28 10:54:00,370-0600 INFO vdl:parameterlog PARAM thread=0-2-8-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000064 2011-03-28 10:54:00,368-0600 INFO vdl:parameterlog PARAM thread=0-2-1 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000226 2011-03-28 10:54:00,369-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,368-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000225 VALUE=1 2011-03-28 10:54:00,365-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000216 VALUE=0:100 2011-03-28 10:54:00,370-0600 INFO vdl:parameterlog PARAM thread=0-2-4-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000209 2011-03-28 10:54:00,370-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,370-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,370-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,371-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000184 path=$ 2011-03-28 10:54:00,371-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000212 path=$ 2011-03-28 10:54:00,371-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000184 VALUE=output 2011-03-28 10:54:00,370-0600 INFO vdl:parameterlog PARAM thread=0-2-9-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000210 2011-03-28 10:54:00,371-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,371-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000212 VALUE=0:100 2011-03-28 10:54:00,371-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000198 path=$ 2011-03-28 10:54:00,364-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=dat_files provenanceid=dataset:20110328-1054-02i6xslf:720000000213 2011-03-28 10:54:00,370-0600 INFO vdl:parameterlog PARAM thread=0-2-6-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000207 2011-03-28 10:54:00,372-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000230 path=$ 2011-03-28 10:54:00,372-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000230 VALUE=1jmt-1_ 2011-03-28 10:54:00,372-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,372-0600 INFO SetFieldValue Set: swift#mapper#17020=1jmt-1_ 2011-03-28 10:54:00,366-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000224 path=$ 2011-03-28 10:54:00,370-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,371-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000198 VALUE=.dat 2011-03-28 10:54:00,371-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,370-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,373-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000205 path=$ 2011-03-28 10:54:00,368-0600 INFO vdl:parameterlog PARAM thread=0-2-5-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000037 2011-03-28 10:54:00,372-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,368-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000229 VALUE=0 2011-03-28 10:54:00,372-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000187 path=$ 2011-03-28 10:54:00,373-0600 INFO operators OPERATOR thread=0-2-0-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000185 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000229 2011-03-28 10:54:00,373-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000187 VALUE=1jmt-1_ 2011-03-28 10:54:00,372-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000171 path=$ 2011-03-28 10:54:00,370-0600 INFO vdl:parameterlog PARAM thread=0-2-7-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000068 2011-03-28 10:54:00,372-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000224 VALUE=0:100 2011-03-28 10:54:00,374-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000171 VALUE=3 2011-03-28 10:54:00,373-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000233 path=$ 2011-03-28 10:54:00,374-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000233 VALUE=1 2011-03-28 10:54:00,374-0600 INFO vdl:parameterlog PARAM thread=0-2-6-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000059 2011-03-28 10:54:00,374-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,373-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000205 VALUE=0:100 2011-03-28 10:54:00,374-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000234 path=$ 2011-03-28 10:54:00,374-0600 INFO vdl:parameterlog PARAM thread=0-2-1-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000033 2011-03-28 10:54:00,374-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000234 VALUE=1 2011-03-28 10:54:00,374-0600 INFO vdl:parameterlog PARAM thread=0-2-5-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000214 2011-03-28 10:54:00,375-0600 WARN trace SwiftScript trace: 1jmt-1 2011-03-28 10:54:00,374-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,375-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,375-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000226 path=$ 2011-03-28 10:54:00,375-0600 INFO vdl:parameterlog PARAM thread=0-2-6-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000065 2011-03-28 10:54:00,371-0600 INFO vdl:parameterlog PARAM thread=0-2-8-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000218 2011-03-28 10:54:00,375-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000226 VALUE=1 2011-03-28 10:54:00,375-0600 INFO vdl:parameterlog PARAM thread=0-2-5-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000056 2011-03-28 10:54:00,375-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000236 path=$ 2011-03-28 10:54:00,375-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000236 VALUE=1y4m-1 2011-03-28 10:54:00,375-0600 INFO vdl:parameterlog PARAM thread=0-2-6-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000222 2011-03-28 10:54:00,376-0600 INFO vdl:parameterlog PARAM thread=0-2-5-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000073 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000237 path=$ 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000238 path=$ 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000237 VALUE=0:100 2011-03-28 10:54:00,375-0600 INFO vdl:parameterlog PARAM thread=0-2-7-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000072 2011-03-28 10:54:00,376-0600 INFO vdl:mains ARRAYRANGE thread=0-2-0-8 array=dataset:20110328-1054-02i6xslf:720000000239 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000229 step=none 2011-03-28 10:54:00,372-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000232 path=$ 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000238 VALUE=2e5p-1 2011-03-28 10:54:00,373-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000149 path=$ 2011-03-28 10:54:00,376-0600 INFO vdl:parameterlog PARAM thread=0-2-5-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000227 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000242 path=$ 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000149 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000243 path=$ 2011-03-28 10:54:00,374-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,375-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000235 path=$ 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000241 path=$ 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000066 path=$ 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000232 VALUE=input/1jmt-1.pdb 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000240 path=$ 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000240 VALUE=0 2011-03-28 10:54:00,378-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000239 path=$ 2011-03-28 10:54:00,378-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000245 path=$ 2011-03-28 10:54:00,378-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000245 VALUE=1y4m-2 2011-03-28 10:54:00,378-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000246 path=$ 2011-03-28 10:54:00,378-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000246 VALUE=0:100 2011-03-28 10:54:00,379-0600 INFO vdl:parameterlog PARAM thread=0-2-0-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000244 2011-03-28 10:54:00,379-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000247 path=$ 2011-03-28 10:54:00,379-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000247 VALUE=input/1y4m-2.pdb 2011-03-28 10:54:00,379-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000248 path=$ 2011-03-28 10:54:00,379-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000248 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,379-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000249 path=$ 2011-03-28 10:54:00,380-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000249 VALUE=10 2011-03-28 10:54:00,380-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,380-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000251 path=$ 2011-03-28 10:54:00,380-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000251 VALUE=0:100 2011-03-28 10:54:00,380-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,380-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,380-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000244 path=$ 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000235 VALUE=2eaq-1 2011-03-28 10:54:00,376-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000182 path=$ 2011-03-28 10:54:00,376-0600 INFO vdl:parameterlog PARAM thread=0-2-7-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000221 2011-03-28 10:54:00,397-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000252 path=$ 2011-03-28 10:54:00,397-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000182 VALUE=1 2011-03-28 10:54:00,397-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000252 VALUE=0:100 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000066 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,377-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000241 VALUE=0:100 2011-03-28 10:54:00,377-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,398-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000254 path=$ 2011-03-28 10:54:00,398-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000253 path=$ 2011-03-28 10:54:00,398-0600 INFO vdl:parameterlog PARAM thread=0-2-0-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000032 2011-03-28 10:54:00,398-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000253 VALUE=input/2eaq-1.pdb 2011-03-28 10:54:00,398-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000255 path=$ 2011-03-28 10:54:00,398-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000255 VALUE=input/2e5p-1.pdb 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000256 path=$ 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000256 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000257 path=$ 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000257 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000258 path=$ 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000258 VALUE=10 2011-03-28 10:54:00,398-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000207 path=$ 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000260 path=$ 2011-03-28 10:54:00,376-0600 INFO vdl:parameterlog PARAM thread=0-2-2 direction=intermediate variable=n provenanceid=dataset:20110328-1054-02i6xslf:720000000231 2011-03-28 10:54:00,397-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000244 VALUE=0:100 2011-03-28 10:54:00,399-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,400-0600 INFO SetFieldValue Set: swift#mapper#17017=3 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000260 VALUE=0 2011-03-28 10:54:00,400-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000125 path=$ 2011-03-28 10:54:00,400-0600 INFO SetFieldValue Set: swift#mapper#17018=output 2011-03-28 10:54:00,400-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000125 VALUE=3 2011-03-28 10:54:00,400-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000132 path=$ 2011-03-28 10:54:00,400-0600 INFO SetFieldValue Set: str_file_mobile=input/4TRA.pdb 2011-03-28 10:54:00,400-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000132 VALUE=output 2011-03-28 10:54:00,400-0600 INFO SetFieldValue Set: swift#mapper#17022=.dat 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000153 path=$ 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000207 VALUE=0:100 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000261 path=$ 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000153 VALUE=.dat 2011-03-28 10:54:00,398-0600 INFO SetFieldValue Set: str_file_static=input/1jmt-1.pdb 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000262 path=$ 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000262 VALUE=input/1wf0-1.pdb 2011-03-28 10:54:00,399-0600 INFO vdl:parameterlog PARAM thread=0-2-0-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000244 2011-03-28 10:54:00,401-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,401-0600 INFO SetFieldValue Set: str_file_static=input/1wf0-1.pdb 2011-03-28 10:54:00,398-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000254 VALUE=2dhy-1 2011-03-28 10:54:00,402-0600 INFO vdl:parameterlog PARAM thread=0-2-2-0 direction=input variable=TODO_name_or_pos provenanceid=dataset:20110328-1054-02i6xslf:720000000034 2011-03-28 10:54:00,400-0600 INFO operators OPERATOR thread=0-2-3-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000182 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000260 2011-03-28 10:54:00,402-0600 WARN trace SwiftScript trace: 1wf0-1 2011-03-28 10:54:00,402-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000113 path=$ 2011-03-28 10:54:00,402-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000113 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,402-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000044 path=$ 2011-03-28 10:54:00,402-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000044 VALUE=input/1wf0-1.pdb 2011-03-28 10:54:00,403-0600 INFO vdl:execute START thread=0-2-5-8-0-1 tr=modftdock 2011-03-28 10:54:00,403-0600 INFO vdl:execute START thread=0-2-9-8-0-1 tr=modftdock 2011-03-28 10:54:00,404-0600 INFO vdl:mains ARRAYRANGE thread=0-2-3-8 array=dataset:20110328-1054-02i6xslf:720000000266 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000260 step=none 2011-03-28 10:54:00,404-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000267 path=$ 2011-03-28 10:54:00,404-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000267 VALUE=0 2011-03-28 10:54:00,404-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000266 path=$ 2011-03-28 10:54:00,406-0600 INFO vdl:parameterlog PARAM thread=0-2-3-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000268 2011-03-28 10:54:00,407-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000270 path=$ 2011-03-28 10:54:00,407-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000270 VALUE=0:100 2011-03-28 10:54:00,407-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,407-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,407-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000268 path=$ 2011-03-28 10:54:00,407-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000268 VALUE=0:100 2011-03-28 10:54:00,408-0600 INFO vdl:parameterlog PARAM thread=0-2-3-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000035 2011-03-28 10:54:00,408-0600 INFO vdl:parameterlog PARAM thread=0-2-3-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000268 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000263 path=$ 2011-03-28 10:54:00,410-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000263 VALUE=1 2011-03-28 10:54:00,410-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,410-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000271 path=$ 2011-03-28 10:54:00,410-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000271 VALUE=1 2011-03-28 10:54:00,410-0600 INFO VDLFunction FUNCTION: toint() 2011-03-28 10:54:00,410-0600 INFO SetFieldValue Set: n=1 2011-03-28 10:54:00,410-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000231 path=$ 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000231 VALUE=1 2011-03-28 10:54:00,402-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000265 path=$ 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000265 VALUE=0:100 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000272 path=$ 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000272 VALUE=0 2011-03-28 10:54:00,411-0600 INFO operators OPERATOR thread=0-2-2-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000231 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000272 2011-03-28 10:54:00,411-0600 INFO vdl:parameterlog PARAM thread=0-2-3-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000071 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000273 path=$ 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000273 VALUE=input/2dhy-1.pdb 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000274 path=$ 2011-03-28 10:54:00,411-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000274 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,412-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000275 path=$ 2011-03-28 10:54:00,412-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000275 VALUE=10 2011-03-28 10:54:00,412-0600 INFO vdl:parameterlog PARAM thread=0-2-3-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000087 2011-03-28 10:54:00,402-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000264 path=$ 2011-03-28 10:54:00,412-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000264 VALUE=2day-1 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000118 path=$ 2011-03-28 10:54:00,412-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000277 path=$ 2011-03-28 10:54:00,412-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000118 type file_pdb with no value at dataset=file_mobile (closed).$ 2011-03-28 10:54:00,412-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000277 VALUE=0:100 2011-03-28 10:54:00,412-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000111 path=$ 2011-03-28 10:54:00,412-0600 INFO vdl:mains ARRAYRANGE thread=0-2-2-8 array=dataset:20110328-1054-02i6xslf:720000000276 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000272 step=none 2011-03-28 10:54:00,402-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000134 path=$ 2011-03-28 10:54:00,412-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000279 path=$ 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000278 path=$ 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000279 VALUE=0 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000278 VALUE=input/2day-1.pdb 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000276 path=$ 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000280 path=$ 2011-03-28 10:54:00,413-0600 INFO vdl:execute START thread=0-2-7-8-0-1 tr=modftdock 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000280 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000282 path=$ 2011-03-28 10:54:00,413-0600 INFO vdl:parameterlog PARAM thread=0-2-2-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000281 2011-03-28 10:54:00,401-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000261 VALUE=1wf0-1_ 2011-03-28 10:54:00,414-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,414-0600 INFO SetFieldValue Set: swift#mapper#17020=1wf0-1_ 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode Found data org.griphyn.vdl.mapping.RootDataNode identifier dataset:20110328-1054-02i6xslf:720000000134 type file_pdb with no value at dataset=file_static (closed).$ 2011-03-28 10:54:00,412-0600 INFO vdl:parameterlog PARAM thread=0-2-3-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000269 2011-03-28 10:54:00,414-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000140 path=$ 2011-03-28 10:54:00,414-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000140 VALUE=1wf0-1_ 2011-03-28 10:54:00,414-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000043 path=$ 2011-03-28 10:54:00,414-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000043 VALUE=input/1jmt-1.pdb 2011-03-28 10:54:00,414-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000283 path=$ 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000282 VALUE=10 2011-03-28 10:54:00,413-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000111 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000242 VALUE=input/1y4m-1.pdb 2011-03-28 10:54:00,414-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,414-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000283 VALUE=0:100 2011-03-28 10:54:00,415-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000286 path=$ 2011-03-28 10:54:00,415-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,414-0600 INFO vdl:parameterlog PARAM thread=0-2-2-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000034 2011-03-28 10:54:00,415-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,415-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000281 path=$ 2011-03-28 10:54:00,415-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000281 VALUE=0:100 2011-03-28 10:54:00,415-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000286 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,415-0600 INFO vdl:execute START thread=0-2-6-8-0-1 tr=modftdock 2011-03-28 10:54:00,415-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000287 path=$ 2011-03-28 10:54:00,415-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000287 VALUE=10 2011-03-28 10:54:00,415-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,377-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000243 VALUE=0 2011-03-28 10:54:00,416-0600 INFO operators OPERATOR thread=0-2-1-8 operator=subtraction lhs=dataset:20110328-1054-02i6xslf:720000000226 rhs=dataset:20110328-1054-02i6xslf:720000000026 result=dataset:20110328-1054-02i6xslf:720000000243 2011-03-28 10:54:00,416-0600 INFO vdl:execute START thread=0-2-4-8-0-1 tr=modftdock 2011-03-28 10:54:00,416-0600 INFO vdl:mains ARRAYRANGE thread=0-2-1-8 array=dataset:20110328-1054-02i6xslf:720000000288 from=dataset:20110328-1054-02i6xslf:720000000024 to=dataset:20110328-1054-02i6xslf:720000000243 step=none 2011-03-28 10:54:00,416-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000289 path=$ 2011-03-28 10:54:00,416-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000289 VALUE=0 2011-03-28 10:54:00,417-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000288 path=$ 2011-03-28 10:54:00,417-0600 INFO vdl:parameterlog PARAM thread=0-2-1-8-0 direction=intermediate variable=str_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000290 2011-03-28 10:54:00,417-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000291 path=$ 2011-03-28 10:54:00,417-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000291 VALUE=0:100 2011-03-28 10:54:00,417-0600 INFO VDLFunction FUNCTION: strcat() 2011-03-28 10:54:00,417-0600 INFO SetFieldValue Set: str_modulo=0:100 2011-03-28 10:54:00,415-0600 INFO vdl:parameterlog PARAM thread=0-2-2-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000281 2011-03-28 10:54:00,417-0600 INFO vdl:parameterlog PARAM thread=0-2-1-8-0-1 direction=input variable=param_modulo provenanceid=dataset:20110328-1054-02i6xslf:720000000033 2011-03-28 10:54:00,418-0600 INFO vdl:parameterlog PARAM thread=0-2-2-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000113 2011-03-28 10:54:00,418-0600 INFO vdl:parameterlog PARAM thread=0-2-1-8-0-1 direction=input variable=param_root provenanceid=dataset:20110328-1054-02i6xslf:720000000290 2011-03-28 10:54:00,418-0600 INFO vdl:parameterlog PARAM thread=0-2-2-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000118 2011-03-28 10:54:00,418-0600 INFO vdl:parameterlog PARAM thread=0-2-1-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000134 2011-03-28 10:54:00,418-0600 INFO vdl:parameterlog PARAM thread=0-2-2-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000284 2011-03-28 10:54:00,418-0600 INFO vdl:parameterlog PARAM thread=0-2-1-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000149 2011-03-28 10:54:00,418-0600 INFO vdl:parameterlog PARAM thread=0-2-1-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000292 2011-03-28 10:54:00,418-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000293 path=$ 2011-03-28 10:54:00,418-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000293 VALUE=1wf0-1 2011-03-28 10:54:00,399-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000259 path=$ 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000294 path=$ 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000259 VALUE=10 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000294 VALUE=0:100 2011-03-28 10:54:00,419-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000295 path=$ 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000290 path=$ 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000295 VALUE=input/1wf0-1.pdb 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000290 VALUE=0:100 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000296 path=$ 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000296 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,419-0600 INFO vdl:execute START thread=0-2-8-8-0-1 tr=modftdock 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000298 path=$ 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000298 VALUE=1jmt-1 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000299 path=$ 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000299 VALUE=0:100 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000300 path=$ 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000300 VALUE=input/1jmt-1.pdb 2011-03-28 10:54:00,414-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000285 path=$ 2011-03-28 10:54:00,419-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000297 path=$ 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000285 VALUE=1wxp-1 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000297 VALUE=10 2011-03-28 10:54:00,420-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000301 path=$ 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000301 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,421-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000303 path=$ 2011-03-28 10:54:00,421-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000303 VALUE=10 2011-03-28 10:54:00,421-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,421-0600 INFO vdl:execute START thread=0-2-2-8-0-1 tr=modftdock 2011-03-28 10:54:00,421-0600 INFO vdl:execute START thread=0-2-1-8-0-1 tr=modftdock 2011-03-28 10:54:00,402-0600 INFO vdl:parameterlog PARAM thread=0-2-0-8-0-1 direction=input variable=param_file_static provenanceid=dataset:20110328-1054-02i6xslf:720000000061 2011-03-28 10:54:00,422-0600 INFO vdl:parameterlog PARAM thread=0-2-0-8-0-1 direction=input variable=param_file_mobile provenanceid=dataset:20110328-1054-02i6xslf:720000000067 2011-03-28 10:54:00,420-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000302 path=$ 2011-03-28 10:54:00,422-0600 INFO vdl:parameterlog PARAM thread=0-2-0-8-0-1 direction=output variable=dat_file provenanceid=dataset:20110328-1054-02i6xslf:720000000250 2011-03-28 10:54:00,422-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000302 VALUE=0:100 2011-03-28 10:54:00,422-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000304 path=$ 2011-03-28 10:54:00,422-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000304 VALUE=input/1wxp-1.pdb 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000305 path=$ 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000306 path=$ 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000305 VALUE=1j55-1 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000306 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000307 path=$ 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000308 path=$ 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000307 VALUE=0:100 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000308 VALUE=10 2011-03-28 10:54:00,423-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000309 path=$ 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000309 VALUE=input/1j55-1.pdb 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000310 path=$ 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000310 VALUE=input/4TRA.pdb 2011-03-28 10:54:00,423-0600 INFO AbstractDataNode ROOTPATH dataset=dataset:20110328-1054-02i6xslf:720000000311 path=$ 2011-03-28 10:54:00,424-0600 INFO AbstractDataNode VALUE dataset=dataset:20110328-1054-02i6xslf:720000000311 VALUE=10 2011-03-28 10:54:00,424-0600 INFO vdl:execute START thread=0-2-3-8-0-1 tr=modftdock 2011-03-28 10:54:00,424-0600 INFO VDLFunction FUNCTION: arg() 2011-03-28 10:54:00,424-0600 INFO vdl:execute START thread=0-2-0-8-0-1 tr=modftdock 2011-03-28 10:54:00,424-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,425-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,426-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,426-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,426-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,426-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,426-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,426-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,427-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,427-0600 INFO WeightedHostScoreScheduler CONTACT_SELECTED host=pbs, score=99.854 2011-03-28 10:54:00,429-0600 INFO GlobalSubmitQueue No global submit throttle set. Using default (1024) 2011-03-28 10:54:00,431-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,431-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,432-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,432-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,434-0600 INFO vdl:initshareddir START host=pbs - Initializing shared directory 2011-03-28 10:54:00,436-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,493-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,522-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,524-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,526-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,526-0600 INFO vdl:initshareddir END host=pbs - Done initializing shared directory 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-jo0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-ko0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-io0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-fo0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-eo0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-do0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-go0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,534-0600 INFO vdl:createdirset START jobid=modftdock-ho0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,535-0600 INFO vdl:createdirset START jobid=modftdock-lo0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,535-0600 INFO vdl:createdirset START jobid=modftdock-mo0txv7k host=pbs - Initializing directory structure 2011-03-28 10:54:00,535-0600 INFO vdl:createdirs START path=input dir=ftdock-20110328-1053-5q1fu8re/shared - Creating directory structure 2011-03-28 10:54:00,536-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,537-0600 INFO vdl:createdirs START path=output dir=ftdock-20110328-1053-5q1fu8re/shared - Creating directory structure 2011-03-28 10:54:00,538-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-do0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-go0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-jo0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-io0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-eo0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-fo0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-mo0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-ko0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-ho0txv7k - Done initializing directory structure 2011-03-28 10:54:00,539-0600 INFO vdl:createdirset END jobid=modftdock-lo0txv7k - Done initializing directory structure 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-do0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-go0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-jo0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-io0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-eo0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-fo0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-mo0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-ko0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-ho0txv7k - Staging in files 2011-03-28 10:54:00,540-0600 INFO vdl:dostagein START jobid=modftdock-lo0txv7k - Staging in files 2011-03-28 10:54:00,544-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,544-0600 INFO LateBindingScheduler JobQueue: 1 2011-03-28 10:54:00,545-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,545-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,546-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,546-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,546-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,546-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,547-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,547-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,581-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,586-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,586-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,587-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,587-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,588-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,588-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,589-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,589-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,589-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,589-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,632-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,638-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,638-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,638-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,638-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,639-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,639-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,640-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,640-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,640-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,641-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,675-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,683-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,683-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,684-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,684-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,684-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,684-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,685-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,685-0600 INFO LateBindingScheduler JobQueue: 12 2011-03-28 10:54:00,686-0600 INFO LateBindingScheduler JobQueue: 4 2011-03-28 10:54:00,687-0600 INFO LateBindingScheduler JobQueue: 3 2011-03-28 10:54:00,687-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,687-0600 INFO vdl:dostagein END jobid=modftdock-eo0txv7k - Staging in finished 2011-03-28 10:54:00,687-0600 INFO vdl:dostagein END jobid=modftdock-fo0txv7k - Staging in finished 2011-03-28 10:54:00,687-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,688-0600 INFO LateBindingScheduler JobQueue: 2 2011-03-28 10:54:00,688-0600 INFO vdl:dostagein END jobid=modftdock-jo0txv7k - Staging in finished 2011-03-28 10:54:00,688-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,689-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,689-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,690-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,690-0600 INFO vdl:dostagein END jobid=modftdock-go0txv7k - Staging in finished 2011-03-28 10:54:00,690-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,691-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,691-0600 INFO vdl:dostagein END jobid=modftdock-io0txv7k - Staging in finished 2011-03-28 10:54:00,691-0600 INFO LateBindingScheduler JobQueue: 0 2011-03-28 10:54:00,692-0600 INFO vdl:dostagein END jobid=modftdock-ko0txv7k - Staging in finished 2011-03-28 10:54:00,693-0600 INFO vdl:dostagein END jobid=modftdock-ho0txv7k - Staging in finished 2011-03-28 10:54:00,693-0600 INFO vdl:dostagein END jobid=modftdock-do0txv7k - Staging in finished 2011-03-28 10:54:00,693-0600 INFO vdl:dostagein END jobid=modftdock-lo0txv7k - Staging in finished 2011-03-28 10:54:00,693-0600 INFO vdl:dostagein END jobid=modftdock-mo0txv7k - Staging in finished 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-9-8-0-1-1-1301331239815) is /bin/bash shared/_swiftwrap modftdock-jo0txv7k -jobdir j -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/2eaq-1.pdb|input/4TRA.pdb -of output/2eaq-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 2eaq-1 -root 0:100 -static input/2eaq-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-5-8-0-1-1-1301331239814) is /bin/bash shared/_swiftwrap modftdock-fo0txv7k -jobdir f -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/1y4m-2.pdb|input/4TRA.pdb -of output/1y4m-2_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 1y4m-2 -root 0:100 -static input/1y4m-2.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-2-8-0-1-1-1301331239819) is /bin/bash shared/_swiftwrap modftdock-io0txv7k -jobdir i -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/1wf0-1.pdb|input/4TRA.pdb -of output/1wf0-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 1wf0-1 -root 0:100 -static input/1wf0-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-8-8-0-1-1-1301331239822) is /bin/bash shared/_swiftwrap modftdock-mo0txv7k -jobdir m -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/2e5p-1.pdb|input/4TRA.pdb -of output/2e5p-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 2e5p-1 -root 0:100 -static input/2e5p-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-3-8-0-1-1-1301331239821) is /bin/bash shared/_swiftwrap modftdock-do0txv7k -jobdir d -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/1wxp-1.pdb|input/4TRA.pdb -of output/1wxp-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 1wxp-1 -root 0:100 -static input/1wxp-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-7-8-0-1-1-1301331239818) is /bin/bash shared/_swiftwrap modftdock-ko0txv7k -jobdir k -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/2dhy-1.pdb|input/4TRA.pdb -of output/2dhy-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 2dhy-1 -root 0:100 -static input/2dhy-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-4-8-0-1-1-1301331239823) is /bin/bash shared/_swiftwrap modftdock-lo0txv7k -jobdir l -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/1y4m-1.pdb|input/4TRA.pdb -of output/1y4m-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 1y4m-1 -root 0:100 -static input/1y4m-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,714-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-6-8-0-1-1-1301331239817) is /bin/bash shared/_swiftwrap modftdock-go0txv7k -jobdir g -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/2day-1.pdb|input/4TRA.pdb -of output/2day-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 2day-1 -root 0:100 -static input/2day-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,715-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-0-8-0-1-1-1301331239813) is /bin/bash shared/_swiftwrap modftdock-eo0txv7k -jobdir e -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/1j55-1.pdb|input/4TRA.pdb -of output/1j55-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 1j55-1 -root 0:100 -static input/1j55-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,715-0600 INFO GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION, identity=urn:0-2-1-8-0-1-1-1301331239820) is /bin/bash shared/_swiftwrap modftdock-ho0txv7k -jobdir h -scratch -e /lustre/beagle/ketan/labs/modftdock/app/modftdock.sh -out stdout.txt -err stderr.txt -i -d input|output -if input/1jmt-1.pdb|input/4TRA.pdb -of output/1jmt-1_000.dat -k -cdmfile cdm -status provider -a 32 -modulo 1jmt-1 -root 0:100 -static input/1jmt-1.pdb -mobile input/4TRA.pdb -calculate_grid 10 -angle_step 10 -keep 10 -noelec 2011-03-28 10:54:00,851-0600 INFO LocalService Started local service: 192.5.86.101:33808 2011-03-28 10:54:00,998-0600 INFO BootstrapService Socket bound. URL is http://login1.beagle.ci.uchicago.edu:59244 2011-03-28 10:54:01,097-0600 INFO Settings Local contacts: [http://192.5.86.101:48527, http://10.128.2.245:48527, http://127.0.0.2:48527] 2011-03-28 10:54:01,099-0600 INFO CoasterService Started local service: http://192.5.86.101:48527 2011-03-28 10:54:01,099-0600 INFO CoasterService Reserving channel for registration 2011-03-28 10:54:01,141-0600 INFO AbstractKarajanChannel MetaChannel: 490937667[509877860: {}] -> null: Disabling heartbeats (disabled in config) 2011-03-28 10:54:01,141-0600 INFO MetaChannel MetaChannel: 490937667[509877860: {}] -> null.bind -> null[509877860: {}] 2011-03-28 10:54:01,142-0600 INFO AbstractKarajanChannel MetaChannel: 26935707[1110983224: {}] -> null: Disabling heartbeats (disabled in config) 2011-03-28 10:54:01,142-0600 INFO MetaChannel MetaChannel: 26935707[1110983224: {}] -> null.bind -> null[1110983224: {}] 2011-03-28 10:54:01,142-0600 INFO CoasterService Sending registration 2011-03-28 10:54:01,145-0600 INFO MetaChannel Trying to re-bind current channel 2011-03-28 10:54:01,146-0600 INFO CoasterService Registration complete 2011-03-28 10:54:01,146-0600 INFO CoasterService Started coaster service: http://192.5.86.101:33924 2011-03-28 10:54:01,686-0600 INFO BlockQueueProcessor allocsize = 0.0, queuedsize = 10.85333042216863, running = 0.0, qsz = 10 2011-03-28 10:54:01,689-0600 INFO BlockQueueProcessor Requeued 10 non-fitting jobs 2011-03-28 10:54:01,693-0600 INFO BlockQueueProcessor Settings { slots = 30 workersPerNode = 24 nodeGranularity = 10 allocationStepSize = 0.1 maxNodes = 10 lowOverallocation = 100.0 highOverallocation = 100.0 overallocationDecayFactor = 0.0010 spread = 0.9 reserve = 60.000s maxtime = 100000 project = null queue = null remoteMonitorEnabled = false kernelprofile = null alcfbgpnat = false internalHostname = 10.128.2.245 hookClass = null workerManager = block workerLoggingLevel = NONE ppn = 24:cray:pack ldLibraryPath = null workerCopies = null directory = null useHashBang = null } 2011-03-28 10:54:01,694-0600 INFO BlockQueueProcessor Required size: 11.364832126482092 for 10 jobs 2011-03-28 10:54:01,694-0600 INFO BlockQueueProcessor h: 99940, jj: 3600, x-last: , r: 9, sumsz: 9 2011-03-28 10:54:01,694-0600 INFO BlockQueueProcessor h: 99940, w: 240, size: 1.0, msz: 1, w*h: 23985600 2011-03-28 10:54:01,700-0600 INFO BlockQueueProcessor Added: 0 - 9 2011-03-28 10:54:01,700-0600 INFO Block Starting block: workers=240, walltime=99940.000s 2011-03-28 10:54:01,702-0600 INFO RemoteLogHandler BLOCK_REQUESTED id=0328-541001-000000, w=240, h=99940 2011-03-28 10:54:01,703-0600 INFO BlockTaskSubmitter Queuing block Block 0328-541001-000000 (240x99940.000s) for submission 2011-03-28 10:54:01,704-0600 INFO BlockQueueProcessor Added 10 jobs to new blocks 2011-03-28 10:54:01,704-0600 INFO BlockQueueProcessor Plan time: 18 2011-03-28 10:54:01,704-0600 INFO BlockTaskSubmitter Submitting block Block 0328-541001-000000 (240x99940.000s) 2011-03-28 10:54:01,704-0600 INFO ExecutionTaskHandler provider=pbs 2011-03-28 10:54:01,730-0600 INFO Block Block task status changed: Submitting 2011-03-28 10:54:02,319-0600 INFO BlockTaskSubmitter Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:02,320-0600 INFO Block Worker task failed: Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:03,904-0600 INFO BlockQueueProcessor Cleaning done block Block 0328-541001-000000 (240x99940.000s) 2011-03-28 10:54:03,904-0600 INFO Block Shutting down block Block 0328-541001-000000 (240x99940.000s) 2011-03-28 10:54:03,904-0600 INFO RemoteLogHandler BLOCK_SHUTDOWN id=0328-541001-000000 2011-03-28 10:54:03,904-0600 INFO Block Block Block 0328-541001-000000 (240x99940.000s) not running. Cancelling job. 2011-03-28 10:54:03,904-0600 WARN Block Failed to shut down block: Block 0328-541001-000000 (240x99940.000s) org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Can only cancel an active task at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:191) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:102) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:91) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:45) at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:308) at org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:288) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.cleanDoneBlocks(BlockQueueProcessor.java:186) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.updatePlan(BlockQueueProcessor.java:509) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.run(BlockQueueProcessor.java:109) 2011-03-28 10:54:03,905-0600 INFO BlockQueueProcessor Removing block Block 0328-541001-000000 (240x99940.000s) 2011-03-28 10:54:03,905-0600 INFO BlockQueueProcessor Cleaned 1 done blocks 2011-03-28 10:54:03,905-0600 INFO BlockQueueProcessor allocsize = 0.0, queuedsize = 10.85333042216863, running = 0.0, qsz = 10 2011-03-28 10:54:03,905-0600 INFO BlockQueueProcessor Requeued 10 non-fitting jobs 2011-03-28 10:54:03,906-0600 INFO BlockQueueProcessor Required size: 11.364832126482092 for 10 jobs 2011-03-28 10:54:03,906-0600 INFO BlockQueueProcessor h: 99940, jj: 3600, x-last: , r: 9, sumsz: 9 2011-03-28 10:54:03,906-0600 INFO BlockQueueProcessor h: 99940, w: 240, size: 1.0, msz: 1, w*h: 23985600 2011-03-28 10:54:03,906-0600 INFO BlockQueueProcessor Added: 0 - 9 2011-03-28 10:54:03,906-0600 INFO Block Starting block: workers=240, walltime=99940.000s 2011-03-28 10:54:03,908-0600 INFO RemoteLogHandler BLOCK_REQUESTED id=0328-541001-000001, w=240, h=99940 2011-03-28 10:54:03,908-0600 INFO BlockTaskSubmitter Queuing block Block 0328-541001-000001 (240x99940.000s) for submission 2011-03-28 10:54:03,908-0600 INFO BlockQueueProcessor Added 10 jobs to new blocks 2011-03-28 10:54:03,908-0600 INFO BlockQueueProcessor Plan time: 4 2011-03-28 10:54:03,908-0600 INFO BlockTaskSubmitter Submitting block Block 0328-541001-000001 (240x99940.000s) 2011-03-28 10:54:03,908-0600 INFO ExecutionTaskHandler provider=pbs 2011-03-28 10:54:03,908-0600 INFO Block Block task status changed: Submitting 2011-03-28 10:54:03,925-0600 INFO BlockTaskSubmitter Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:03,925-0600 INFO Block Worker task failed: Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:06,108-0600 INFO BlockQueueProcessor Cleaning done block Block 0328-541001-000001 (240x99940.000s) 2011-03-28 10:54:06,108-0600 INFO Block Shutting down block Block 0328-541001-000001 (240x99940.000s) 2011-03-28 10:54:06,108-0600 INFO Block Block Block 0328-541001-000001 (240x99940.000s) not running. Cancelling job. 2011-03-28 10:54:06,108-0600 INFO RemoteLogHandler BLOCK_SHUTDOWN id=0328-541001-000001 2011-03-28 10:54:06,108-0600 WARN Block Failed to shut down block: Block 0328-541001-000001 (240x99940.000s) org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Can only cancel an active task at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:191) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:102) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:91) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:45) at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:308) at org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:288) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.cleanDoneBlocks(BlockQueueProcessor.java:186) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.updatePlan(BlockQueueProcessor.java:509) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.run(BlockQueueProcessor.java:109) 2011-03-28 10:54:06,109-0600 INFO BlockQueueProcessor Removing block Block 0328-541001-000001 (240x99940.000s) 2011-03-28 10:54:06,109-0600 INFO BlockQueueProcessor Cleaned 1 done blocks 2011-03-28 10:54:06,109-0600 INFO BlockQueueProcessor allocsize = 0.0, queuedsize = 10.85333042216863, running = 0.0, qsz = 10 2011-03-28 10:54:06,109-0600 INFO BlockQueueProcessor Requeued 10 non-fitting jobs 2011-03-28 10:54:06,109-0600 INFO BlockQueueProcessor Required size: 11.364832126482092 for 10 jobs 2011-03-28 10:54:06,109-0600 INFO BlockQueueProcessor h: 99940, jj: 3600, x-last: , r: 9, sumsz: 9 2011-03-28 10:54:06,110-0600 INFO BlockQueueProcessor h: 99940, w: 240, size: 1.0, msz: 1, w*h: 23985600 2011-03-28 10:54:06,110-0600 INFO BlockQueueProcessor Added: 0 - 9 2011-03-28 10:54:06,110-0600 INFO Block Starting block: workers=240, walltime=99940.000s 2011-03-28 10:54:06,110-0600 INFO RemoteLogHandler BLOCK_REQUESTED id=0328-541001-000002, w=240, h=99940 2011-03-28 10:54:06,110-0600 INFO BlockTaskSubmitter Queuing block Block 0328-541001-000002 (240x99940.000s) for submission 2011-03-28 10:54:06,110-0600 INFO BlockQueueProcessor Added 10 jobs to new blocks 2011-03-28 10:54:06,110-0600 INFO BlockQueueProcessor Plan time: 2 2011-03-28 10:54:06,110-0600 INFO BlockTaskSubmitter Submitting block Block 0328-541001-000002 (240x99940.000s) 2011-03-28 10:54:06,110-0600 INFO ExecutionTaskHandler provider=pbs 2011-03-28 10:54:06,110-0600 INFO Block Block task status changed: Submitting 2011-03-28 10:54:06,127-0600 INFO BlockTaskSubmitter Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:06,128-0600 INFO Block Worker task failed: Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:08,310-0600 INFO BlockQueueProcessor Cleaning done block Block 0328-541001-000002 (240x99940.000s) 2011-03-28 10:54:08,310-0600 INFO Block Shutting down block Block 0328-541001-000002 (240x99940.000s) 2011-03-28 10:54:08,310-0600 INFO Block Block Block 0328-541001-000002 (240x99940.000s) not running. Cancelling job. 2011-03-28 10:54:08,310-0600 WARN Block Failed to shut down block: Block 0328-541001-000002 (240x99940.000s) org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Can only cancel an active task at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:191) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:102) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:91) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:45) at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:308) at org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:288) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.cleanDoneBlocks(BlockQueueProcessor.java:186) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.updatePlan(BlockQueueProcessor.java:509) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.run(BlockQueueProcessor.java:109) 2011-03-28 10:54:08,310-0600 INFO RemoteLogHandler BLOCK_SHUTDOWN id=0328-541001-000002 2011-03-28 10:54:08,311-0600 INFO BlockQueueProcessor Removing block Block 0328-541001-000002 (240x99940.000s) 2011-03-28 10:54:08,311-0600 INFO BlockQueueProcessor Cleaned 1 done blocks 2011-03-28 10:54:08,311-0600 INFO BlockQueueProcessor allocsize = 0.0, queuedsize = 10.85333042216863, running = 0.0, qsz = 10 2011-03-28 10:54:08,311-0600 INFO BlockQueueProcessor Requeued 10 non-fitting jobs 2011-03-28 10:54:08,312-0600 INFO BlockQueueProcessor Required size: 11.364832126482092 for 10 jobs 2011-03-28 10:54:08,312-0600 INFO BlockQueueProcessor h: 99940, jj: 3600, x-last: , r: 9, sumsz: 9 2011-03-28 10:54:08,312-0600 INFO BlockQueueProcessor h: 99940, w: 240, size: 1.0, msz: 1, w*h: 23985600 2011-03-28 10:54:08,312-0600 INFO BlockQueueProcessor Added: 0 - 9 2011-03-28 10:54:08,312-0600 INFO Block Starting block: workers=240, walltime=99940.000s 2011-03-28 10:54:08,312-0600 INFO RemoteLogHandler BLOCK_REQUESTED id=0328-541001-000003, w=240, h=99940 2011-03-28 10:54:08,312-0600 INFO BlockTaskSubmitter Queuing block Block 0328-541001-000003 (240x99940.000s) for submission 2011-03-28 10:54:08,312-0600 INFO BlockQueueProcessor Added 10 jobs to new blocks 2011-03-28 10:54:08,312-0600 INFO BlockQueueProcessor Plan time: 2 2011-03-28 10:54:08,312-0600 INFO BlockTaskSubmitter Submitting block Block 0328-541001-000003 (240x99940.000s) 2011-03-28 10:54:08,312-0600 INFO ExecutionTaskHandler provider=pbs 2011-03-28 10:54:08,312-0600 INFO Block Block task status changed: Submitting 2011-03-28 10:54:08,329-0600 INFO BlockTaskSubmitter Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:08,330-0600 INFO Block Worker task failed: Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:10,512-0600 INFO BlockQueueProcessor Cleaning done block Block 0328-541001-000003 (240x99940.000s) 2011-03-28 10:54:10,512-0600 INFO Block Shutting down block Block 0328-541001-000003 (240x99940.000s) 2011-03-28 10:54:10,513-0600 INFO Block Block Block 0328-541001-000003 (240x99940.000s) not running. Cancelling job. 2011-03-28 10:54:10,513-0600 INFO RemoteLogHandler BLOCK_SHUTDOWN id=0328-541001-000003 2011-03-28 10:54:10,513-0600 WARN Block Failed to shut down block: Block 0328-541001-000003 (240x99940.000s) org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Can only cancel an active task at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:191) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:102) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:91) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:45) at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:308) at org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:288) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.cleanDoneBlocks(BlockQueueProcessor.java:186) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.updatePlan(BlockQueueProcessor.java:509) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.run(BlockQueueProcessor.java:109) 2011-03-28 10:54:10,513-0600 INFO BlockQueueProcessor Removing block Block 0328-541001-000003 (240x99940.000s) 2011-03-28 10:54:10,513-0600 INFO BlockQueueProcessor Cleaned 1 done blocks 2011-03-28 10:54:10,513-0600 INFO BlockQueueProcessor allocsize = 0.0, queuedsize = 10.85333042216863, running = 0.0, qsz = 10 2011-03-28 10:54:10,514-0600 INFO BlockQueueProcessor Requeued 10 non-fitting jobs 2011-03-28 10:54:10,514-0600 INFO BlockQueueProcessor Required size: 11.364832126482092 for 10 jobs 2011-03-28 10:54:10,514-0600 INFO BlockQueueProcessor h: 99940, jj: 3600, x-last: , r: 9, sumsz: 9 2011-03-28 10:54:10,514-0600 INFO BlockQueueProcessor h: 99940, w: 240, size: 1.0, msz: 1, w*h: 23985600 2011-03-28 10:54:10,514-0600 INFO BlockQueueProcessor Added: 0 - 9 2011-03-28 10:54:10,514-0600 INFO Block Starting block: workers=240, walltime=99940.000s 2011-03-28 10:54:10,514-0600 INFO RemoteLogHandler BLOCK_REQUESTED id=0328-541001-000004, w=240, h=99940 2011-03-28 10:54:10,514-0600 INFO BlockTaskSubmitter Queuing block Block 0328-541001-000004 (240x99940.000s) for submission 2011-03-28 10:54:10,514-0600 INFO BlockQueueProcessor Added 10 jobs to new blocks 2011-03-28 10:54:10,514-0600 INFO BlockQueueProcessor Plan time: 2 2011-03-28 10:54:10,514-0600 INFO BlockTaskSubmitter Submitting block Block 0328-541001-000004 (240x99940.000s) 2011-03-28 10:54:10,514-0600 INFO ExecutionTaskHandler provider=pbs 2011-03-28 10:54:10,514-0600 INFO Block Block task status changed: Submitting 2011-03-28 10:54:10,531-0600 INFO BlockTaskSubmitter Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:10,532-0600 INFO Block Worker task failed: Error submitting block task org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:68) Caused by: java.lang.IllegalArgumentException: Illegal value for ppn. Must be an integer. at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.parseAndValidateInt(PBSExecutor.java:59) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeCountAndPPN(PBSExecutor.java:94) at org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:161) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:164) at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:86) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53) ... 3 more 2011-03-28 10:54:11,158-0600 INFO TaskNotifier Congestion queue size: 0 2011-03-28 10:54:12,100-0600 INFO ServiceManager Cleaning up... 2011-03-28 10:54:12,101-0600 INFO ServiceManager Shutting down service at https://192.5.86.101:33924 2011-03-28 10:54:12,208-0600 INFO Command Timer cancelled due to JVM shutting down. Going without timeouts. 2011-03-28 10:54:12,214-0600 INFO BlockQueueProcessor Shutting down blocks 2011-03-28 10:54:12,214-0600 INFO Block Shutting down block Block 0328-541001-000004 (240x99940.000s) 2011-03-28 10:54:12,215-0600 INFO Block Block Block 0328-541001-000004 (240x99940.000s) not running. Cancelling job. 2011-03-28 10:54:12,215-0600 INFO RemoteLogHandler BLOCK_SHUTDOWN id=0328-541001-000004 2011-03-28 10:54:12,215-0600 WARN Block Failed to shut down block: Block 0328-541001-000004 (240x99940.000s) org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Can only cancel an active task at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:191) at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85) at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:102) at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:91) at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:45) at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:308) at org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:288) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdownBlocks(BlockQueueProcessor.java:578) at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdown(BlockQueueProcessor.java:570) at org.globus.cog.abstraction.coaster.service.job.manager.JobQueue.shutdown(JobQueue.java:106) at org.globus.cog.abstraction.coaster.service.CoasterService.shutdown(CoasterService.java:264) at org.globus.cog.abstraction.coaster.service.ServiceShutdownHandler.requestComplete(ServiceShutdownHandler.java:28) at org.globus.cog.karajan.workflow.service.handlers.RequestHandler.receiveCompleted(RequestHandler.java:84) at org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleRequest(AbstractKarajanChannel.java:387) at org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel.actualSend(AbstractPipedChannel.java:86) at org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel$Sender.run(AbstractPipedChannel.java:115) 2011-03-28 10:54:12,215-0600 INFO Command Timer cancelled due to JVM shutting down. Going without timeouts. 2011-03-28 10:54:12,215-0600 INFO BlockQueueProcessor Removing block Block 0328-541001-000004 (240x99940.000s) 2011-03-28 10:54:12,215-0600 INFO CoasterService Shutdown sequence completed