<HTML dir=ltr><HEAD><TITLE>RE: [Swift-devel] RE: [Swift-user] Execution error</TITLE>
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<DIV dir=ltr><FONT face=Arial color=#000000 size=2>Hi Mihael,</FONT></DIV>
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<DIV dir=ltr><FONT face=Arial size=2>The error message is different after I change from gt2:PBS to gt2:gt2:PBS on TACC LoneStar. I attached the trace as following. I don't know if there is still setup problem. Thank you very much!</FONT></DIV>
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<DIV dir=ltr><FONT face=Arial size=2>[yuechen@communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file sites.xml -tc.file tc.data<BR>Swift 0.9rc2 swift-r2860 cog-r2388</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>RunID: 20090430-1742-tfabq6q4<BR>Progress:<BR>Progress: Stage in:1<BR>Progress: Stage in:1<BR>Progress: Stage in:1<BR>Progress: Submitting:1<BR>Progress: Submitted:1<BR>Progress: Active:1<BR>Failed to transfer wrapper log from PTMap2-unmod-20090430-1742-tfabq6q4/info/r on TACC_LoneStar<BR>Progress: Active:1<BR>Failed to transfer wrapper log from PTMap2-unmod-20090430-1742-tfabq6q4/info/t on TACC_LoneStar<BR>Progress: Stage in:1<BR>Progress: Active:1<BR>Failed to transfer wrapper log from PTMap2-unmod-20090430-1742-tfabq6q4/info/v on TACC_LoneStar<BR>Progress: Failed:1<BR>Execution failed:<BR> Exception in PTMap2:<BR>Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt, parameters.txt]<BR>Host: TACC_LoneStar<BR>Directory: PTMap2-unmod-20090430-1742-tfabq6q4/jobs/v/PTMap2-v7baq5aj<BR>stderr.txt:</FONT></DIV>
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<DIV dir=ltr><FONT face=Arial size=2>----</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>Caused by:<BR> Cannot submit job<BR>org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job<BR> at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:145)<BR> at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:99)<BR> at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)<BR> at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)<BR> at org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)<BR> at org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)<BR>Caused by: org.globus.gram.GramException: The gatekeeper failed to find the requested service<BR> at org.globus.gram.Gram.checkHttpReply(Gram.java:137)<BR> at org.globus.gram.Gram.request(Gram.java:342)<BR> at org.globus.gram.GramJob.request(GramJob.java:262)<BR> at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:133)<BR> ... 5 more</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>Cleaning up...<BR>Shutting down service at <A href="https://129.114.50.32:35257">https://129.114.50.32:35257</A><BR>Got channel MetaChannel: 13391897 -> GSSSChannel-null(1)<BR>- Done<BR>////////////////////////</FONT></DIV>
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<DIV dir=ltr><FONT face=Arial size=2>Chen, Yue</FONT></DIV></DIV>
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<FONT face=Tahoma size=2><B>From:</B> Mihael Hategan [mailto:hategan@mcs.anl.gov]<BR><B>Sent:</B> Thu 4/30/2009 5:37 PM<BR><B>To:</B> Yue, Chen - BMD<BR><B>Cc:</B> Michael Wilde; swift-devel<BR><B>Subject:</B> RE: [Swift-devel] RE: [Swift-user] Execution error<BR></FONT><BR></DIV>
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<P><FONT size=2>On Thu, 2009-04-30 at 17:32 -0500, Yue, Chen - BMD wrote:<BR>> Hi Michael,<BR>> <BR>> I already have +osg-client-1.0.0-r1 in my .soft file. But I change it<BR>> to +osg-client and tried again. "ranger" gave me the same error<BR>> message. In the meantime, I tested one job on both Abe and Lonestar<BR>> and they both gave me qsub error.<BR><BR>Can you try "gt2:gt2:PBS" instead of "gt2:PBS" on all sites?<BR><BR>> I attached as following:<BR>> <BR>> ////////////////////////////////////<BR>> [yuechen@communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file<BR>> sites.xml -tc.file tc.data<BR>> Swift 0.9rc2 swift-r2860 cog-r2388<BR>> RunID: 20090430-1722-oncfdolb<BR>> Progress:<BR>> Progress: Stage in:1<BR>> Progress: Stage in:1<BR>> Progress: Stage in:1<BR>> Progress: Submitting:1<BR>> Progress: Submitted:1<BR>> Failed to transfer wrapper log from<BR>> PTMap2-unmod-20090430-1722-oncfdolb/info/3 on TACC_LoneStar<BR>> Progress: Active:1<BR>> Failed to transfer wrapper log from<BR>> PTMap2-unmod-20090430-1722-oncfdolb/info/5 on TACC_LoneStar<BR>> Progress: Stage in:1<BR>> Progress: Active:1<BR>> Failed to transfer wrapper log from<BR>> PTMap2-unmod-20090430-1722-oncfdolb/info/7 on TACC_LoneStar<BR>> Progress: Failed:1<BR>> Execution failed:<BR>> Exception in PTMap2:<BR>> Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt,<BR>> parameters.txt]<BR>> Host: TACC_LoneStar<BR>> Directory: PTMap2-unmod-20090430-1722-oncfdolb/jobs/7/PTMap2-7uagp5aj<BR>> stderr.txt:<BR>> stdout.txt:<BR>> ----<BR>> Caused by:<BR>> Cannot submit job: Could not submit job (qsub reported an exit<BR>> code of -1). no error output<BR>> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:<BR>> Cannot submit job: Could not submit job (qsub reported an exit code of<BR>> -1). no error output<BR>> at<BR>> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)<BR>> at<BR>> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)<BR>> at<BR>> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)<BR>> at<BR>> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)<BR>> at<BR>> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)<BR>> Caused by:<BR>> org.globus.cog.abstraction.impl.scheduler.common.ProcessException:<BR>> Could not submit job (qsub reported an exit code of -1). no error<BR>> output<BR>> at<BR>> org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:94)<BR>> at<BR>> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)<BR>> ... 4 more<BR>> Cleaning up...<BR>> Shutting down service at <A href="https://129.114.50.32:34704/">https://129.114.50.32:34704</A><BR>> Got channel MetaChannel: 2013263 -> GSSSChannel-null(1)<BR>> - Done<BR>> /////////////////////////////////////////<BR>> <BR>> My sites.xml is at : /home/yuechen/PTMap2/sites.xml. I'm wondering if<BR>> this still relates to my setup. Thanks!<BR>> <BR>> Chen, Yue<BR>> <BR>> <BR>><BR>><BR></FONT></P></DIV><DIV> </DIV><br><br>This email is intended only for the use of the individual or entity to which it is addressed and may contain information that is privileged and confidential. If the reader of this email message is not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this communication is prohibited. If you have received this email in error, please notify the sender and destroy/delete all copies of the transmittal. Thank you.<br></BODY></HTML>