[Swift-devel] recent trunk changes swift parsing

[ketan]

I updated trunk and seems swift parsing has changed a bit?

I see this:

Swift svn swift-r4502 cog-r3128 (cog modified locally)

RunID: 20110520-2005-kst5ztsf
Progress:  time: Fri, 20 May 2011 20:05:51 +0000
SwiftScript trace: str_roots.[0]:string = 3lyv-4 - Closed
Execution failed:
     For input string: "3.0"


for my this swift:

type file_pdb;
type file_dat;

app (file_dat dat_file)
   do_one_dock(
       string        param_root,
       string        param_modulo,
       file_pdb param_file_static,
       file_pdb param_file_mobile )
{
   modftdock 32
             "-modulo" @param_modulo
             "-root"   @param_root
             "-static" @param_file_static
             "-mobile" @param_file_mobile
             "-calculate_grid" @arg("grid","2.5")
             "-angle_step" "10"
             "-keep" "10"
             "-noelec";
}

string modulus = @arg("m","100");
string str_roots[] = readData( @arg( "list" ) );

foreach str_root in str_roots
{
   trace( str_root );

   string str_file_static = @strcat( "input/", str_root, ".pdb" );
   string str_file_mobile = "input/4TRA.pdb";

   file_pdb file_static < single_file_mapper; file = str_file_static >;
   file_pdb file_mobile < single_file_mapper; file = str_file_mobile >;
   file_dat dat_files[] < simple_mapper;
                               padding = 3,
                               location = "output",
                   prefix  = @strcat( str_root, "_" ),
                   suffix  = ".dat" >;

   // break docking jobs + do 'em in parallel
   int n = @toint(@arg("n","1"));
   foreach mod_index in [0:n-1]
   {
     string str_modulo = @strcat(mod_index, ":", modulus);
     dat_files[ mod_index ] = do_one_dock( str_root,
                       str_modulo,
                       file_static,
                       file_mobile );
   }
}