[Swift-commit] r7521 - SwiftApps/swift-galaxy

[ketan at ci.uchicago.edu]

Author: ketan
Date: 2014-01-27 13:30:57 -0600 (Mon, 27 Jan 2014)
New Revision: 7521

Modified:
   SwiftApps/swift-galaxy/README.txt
   SwiftApps/swift-galaxy/tool_conf.xml
Log:
update readme

Modified: SwiftApps/swift-galaxy/README.txt
===================================================================
--- SwiftApps/swift-galaxy/README.txt	2014-01-27 18:31:50 UTC (rev 7520)
+++ SwiftApps/swift-galaxy/README.txt	2014-01-27 19:30:57 UTC (rev 7521)
@@ -1,12 +1,16 @@
-=How to install this into Galaxy=
+=How to install Swift tools into Galaxy=
 
-=Notes=
+1. Symlink the swift directory in the current directory from galaxy's top level directory. For example, if Galaxy top level directory is galaxy-dist and swift directory is /home/ketan/SwiftApps/swift-galaxy/swift,
 
-1. Untar Illinois.tgz before running powergrid application
-2. The csvs in the lungsearch application are not complete, they contain just the first 50 lines
+cd galaxy-dist
+ln -s /home/ketan/SwiftApps/swift-galaxy/swift swift
 
-==An example==
+2. Add the tool definitions of the tools contained in this Swift to Galaxy's tool_conf.xml. This can be done by copying the text in <section>...</section> from the tool_conf.xml in swift-galaxy directory and paste it to the tool_conf.xml of the Galaxy directory.
 
+3. (Re)start Galaxy. You should see the tools in a toolset titled Swift.
+
+==An example (obsolete) ==
+
 A simple Hello World Swift tool to run with Galaxy.
 
 To set up with your Galaxy environment follow the steps below:

Modified: SwiftApps/swift-galaxy/tool_conf.xml
===================================================================
--- SwiftApps/swift-galaxy/tool_conf.xml	2014-01-27 18:31:50 UTC (rev 7520)
+++ SwiftApps/swift-galaxy/tool_conf.xml	2014-01-27 19:30:57 UTC (rev 7521)
@@ -6,7 +6,9 @@
 
 <toolbox>
   <section name="swift" id="swift">
-    <tool file="swift/swift.xml" />
+    <tool file="swift/genericswift.xml" />
+    <tool file="swift/swiftforeachrange.xml" />
+    <tool file="swift/swiftforeachlist.xml" />
     <tool file="swift/catsn.xml" />
     <tool file="swift/mysim.xml" />
     <tool file="swift/dssat.xml" />
@@ -14,4 +16,5 @@
     <tool file="swift/2stage.xml" />
     <tool file="swift/lungsearch/lungsearch.xml" />
   </section>
+
 </toolbox>